Citrus Sinensis ID: 008039
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 580 | ||||||
| 224068490 | 569 | predicted protein [Populus trichocarpa] | 0.965 | 0.984 | 0.781 | 0.0 | |
| 225437529 | 558 | PREDICTED: uncharacterized protein LOC10 | 0.958 | 0.996 | 0.769 | 0.0 | |
| 255548489 | 587 | heat shock protein binding protein, puta | 0.982 | 0.971 | 0.765 | 0.0 | |
| 449531619 | 580 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.960 | 0.960 | 0.734 | 0.0 | |
| 224128364 | 534 | predicted protein [Populus trichocarpa] | 0.903 | 0.981 | 0.759 | 0.0 | |
| 356505620 | 570 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.982 | 0.721 | 0.0 | |
| 356572777 | 570 | PREDICTED: uncharacterized protein LOC10 | 0.975 | 0.992 | 0.733 | 0.0 | |
| 147827540 | 542 | hypothetical protein VITISV_036192 [Viti | 0.929 | 0.994 | 0.735 | 0.0 | |
| 357511329 | 574 | hypothetical protein MTR_7g109360 [Medic | 0.972 | 0.982 | 0.713 | 0.0 | |
| 449436435 | 508 | PREDICTED: uncharacterized protein LOC10 | 0.805 | 0.919 | 0.798 | 0.0 |
| >gi|224068490|ref|XP_002302757.1| predicted protein [Populus trichocarpa] gi|222844483|gb|EEE82030.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/585 (78%), Positives = 508/585 (86%), Gaps = 25/585 (4%)
Query: 2 ATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL 61
+TSP L+ EKKHWWLSNRKIVDKYI+DAR LIA++E SEIASAL LLDAALALSPRLE+
Sbjct: 4 STSPCLSMNEKKHWWLSNRKIVDKYIKDARNLIASEEQSEIASALKLLDAALALSPRLEV 63
Query: 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS-QQLSRERVKLLHSG 120
ALELKARSLLYLRRFK+VADMLQDYIPSLKMANDDSGS+SS SS QQLSRERVKLL
Sbjct: 64 ALELKARSLLYLRRFKEVADMLQDYIPSLKMANDDSGSISSSDSSSQQLSRERVKLL--- 120
Query: 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180
SD+S DPSFKCFSVSDLKKKVMAGLC+NC+KEGQWRYLVLGQACCHLGLMEDAMV
Sbjct: 121 --PSDNS---DPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLVLGQACCHLGLMEDAMV 175
Query: 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN--HQTPPATPPRTMTESESVSQLLS 238
LLQTGKRL TAAFRR+SIS S+DSF S FP+S++ T P TPPR +TESESV+QLL+
Sbjct: 176 LLQTGKRLTTAAFRRQSISWSEDSFSLSNFPISSDISTSTAPPTPPRNLTESESVTQLLA 235
Query: 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI 298
HIKLLLRRRTAA+AALDAGLYSEAIRHF+KI++GRRGAPQGFLAECYMHRA+AY++SGRI
Sbjct: 236 HIKLLLRRRTAALAALDAGLYSEAIRHFTKILEGRRGAPQGFLAECYMHRAYAYKASGRI 295
Query: 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGP 358
AESIADCNKTLALEP+CIQALDTRA LLETIRCLPDCLHDLEHLKLLYN+ILRDRKLPGP
Sbjct: 296 AESIADCNKTLALEPACIQALDTRASLLETIRCLPDCLHDLEHLKLLYNSILRDRKLPGP 355
Query: 359 AWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHL 418
AWKRH VRYREIPGKLCALTTKIQELK+RVASGET NVDYYALIGLRRGCSRSELERAHL
Sbjct: 356 AWKRHKVRYREIPGKLCALTTKIQELKKRVASGETRNVDYYALIGLRRGCSRSELERAHL 415
Query: 419 LLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEA 478
LLSLRHKPDK+I+F ERC+FA++ DL+SV+DRAKMSALLLYRLLQ+GYS+VMS IMDEEA
Sbjct: 416 LLSLRHKPDKSINFVERCDFANDMDLESVKDRAKMSALLLYRLLQKGYSNVMSTIMDEEA 475
Query: 479 AEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDLNKG 538
AE K AA Q QQ QN+ +E + S++E +G INSN+
Sbjct: 476 AE---KQRKKAARRAAAIQTQQTTQNAKME--------SNPSAVEISGPNRINSNENKVA 524
Query: 539 PSSSNAN---VYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
+SS +N V+QG+FCRD+AAVGNLLSQAGFNRPL VK+EALSC
Sbjct: 525 SASSGSNTASVFQGVFCRDLAAVGNLLSQAGFNRPLAVKFEALSC 569
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437529|ref|XP_002275599.1| PREDICTED: uncharacterized protein LOC100264117 [Vitis vinifera] gi|297743964|emb|CBI36934.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/582 (76%), Positives = 494/582 (84%), Gaps = 26/582 (4%)
Query: 1 MATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE 60
MATSP++ EKKHWWL N+KIVDKY++DAR LIATQE SEIA+AL+LLDAAL LSPR E
Sbjct: 1 MATSPSVAGGEKKHWWLRNKKIVDKYVKDARCLIATQEQSEIATALNLLDAALGLSPRFE 60
Query: 61 LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120
+ALELKARSLLYLRRFKDVADMLQDYIPSLKM S SSD+SSQQLSRERVKLL S
Sbjct: 61 VALELKARSLLYLRRFKDVADMLQDYIPSLKMV---SDDSSSDNSSQQLSRERVKLLSSS 117
Query: 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180
+SS DS RDPSFKCFSVSDLKKKVMAGLC+NCEKEGQWRYLVLGQACCHLGLMEDAMV
Sbjct: 118 NNSSSDSPIRDPSFKCFSVSDLKKKVMAGLCKNCEKEGQWRYLVLGQACCHLGLMEDAMV 177
Query: 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLLS 238
LLQTGKRLA AA RRESI SDDSF S FP++N+ T PATPPRT E ES++QLLS
Sbjct: 178 LLQTGKRLAMAALRRESICWSDDSFSLSNFPITNDITTNNAPATPPRT--EFESITQLLS 235
Query: 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI 298
HIKLLLRR+TAA+AALDAGLYSEAIRHFSKI+DGRRGAPQGFL+EC+MHRA AYRS+GRI
Sbjct: 236 HIKLLLRRKTAALAALDAGLYSEAIRHFSKILDGRRGAPQGFLSECFMHRATAYRSAGRI 295
Query: 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGP 358
AESIADCN+TLAL+P+CIQAL TRA LLE+IRCLPDCLHDLEHLKLLYN+ILRDRKLPGP
Sbjct: 296 AESIADCNRTLALDPTCIQALSTRASLLESIRCLPDCLHDLEHLKLLYNSILRDRKLPGP 355
Query: 359 AWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHL 418
AWKRHNV+YREIPGKLCAL+TKIQELKQRV SGETGNVDYYALIGLRRGCSRSELERAHL
Sbjct: 356 AWKRHNVQYREIPGKLCALSTKIQELKQRVVSGETGNVDYYALIGLRRGCSRSELERAHL 415
Query: 419 LLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEA 478
LL LRHKPDKA +F ERCEF+D+RDLDSV+DRAKMSALLLYRLLQ+GYSSVM+ IMDEEA
Sbjct: 416 LLCLRHKPDKATNFVERCEFSDDRDLDSVKDRAKMSALLLYRLLQKGYSSVMATIMDEEA 475
Query: 479 AEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDLNKG 538
AEK+RK A A A Q Q Q ++E +LE A A+ + T
Sbjct: 476 AEKQRKKAAAALQATAIQAQQTQEQP---KKESELENQATAAPQQQT------------- 519
Query: 539 PSSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S A+V+QG+FCRD+A VGNLLSQAGFNR + VKYEALSC
Sbjct: 520 ---STASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 558
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548489|ref|XP_002515301.1| heat shock protein binding protein, putative [Ricinus communis] gi|223545781|gb|EEF47285.1| heat shock protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/597 (76%), Positives = 506/597 (84%), Gaps = 27/597 (4%)
Query: 1 MATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE 60
MATSP TEKKHWWL+NRK+V KYI+DAR LIATQEH +IASAL+LLDAALALSPRLE
Sbjct: 1 MATSPCSNATEKKHWWLTNRKVVYKYIKDARNLIATQEHGDIASALNLLDAALALSPRLE 60
Query: 61 LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS--------QQLSRE 112
+ALELKARSLLYLRRFKDVADMLQDYIPSLKM N+++ S SS QQLSRE
Sbjct: 61 VALELKARSLLYLRRFKDVADMLQDYIPSLKMGNNNNSDDSGSVSSDSSSSSSSQQLSRE 120
Query: 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172
RVKLL S SS DS +DP+FKCFSVSDLKKKVMAGLC+NC+KEGQWRYL+LGQACCHL
Sbjct: 121 RVKLLTSDSSSSADSEDKDPTFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLILGQACCHL 180
Query: 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTES 230
GLMEDAMVLLQTGKRL TAAFRRESIS SDDSF S FP+S++ T P TPPRT++ES
Sbjct: 181 GLMEDAMVLLQTGKRLTTAAFRRESISWSDDSFSISNFPLSSDISTSSAPPTPPRTLSES 240
Query: 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAF 290
ES+SQLLSHIKLLLRRR AAIAALDAGLY+EAIRHFSKIV+GRRGAPQGFLAECYMHRAF
Sbjct: 241 ESISQLLSHIKLLLRRRAAAIAALDAGLYAEAIRHFSKIVEGRRGAPQGFLAECYMHRAF 300
Query: 291 AYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350
AY++SGRIAESIADCNKTLAL+P+CIQAL+TRA LLETIRCLPDCLHDLEHLKLLYN+IL
Sbjct: 301 AYKASGRIAESIADCNKTLALDPTCIQALETRASLLETIRCLPDCLHDLEHLKLLYNSIL 360
Query: 351 RDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR 410
RDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR
Sbjct: 361 RDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR 420
Query: 411 SELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470
SELERAHLLL LRHKPDKA +F ERCEFAD+RDLDSV+DRAKMSALLLYRLLQ+GYSS+M
Sbjct: 421 SELERAHLLLVLRHKPDKATNFMERCEFADDRDLDSVKDRAKMSALLLYRLLQKGYSSLM 480
Query: 471 SNIMDEEAAEKRRK--TATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAK 528
+ IMDEEAAEK+RK A A A Q+ QN +S +E + ++
Sbjct: 481 ATIMDEEAAEKQRKKAAAALQAAQAAIQVQQRTTQNP----------RPESSKVEKSSSQ 530
Query: 529 IINSNDLN----KGPS-SSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
INSN+ K PS ++N +V+QG+FCRD+A VGNLLSQAGFNRP+ VKYEAL C
Sbjct: 531 RINSNENKPAAVKTPSGTTNQSVFQGVFCRDLATVGNLLSQAGFNRPVPVKYEALRC 587
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531619|ref|XP_004172783.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101230551 [Cucumis sativus] | Back alignment and taxonomy information |
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Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/584 (73%), Positives = 490/584 (83%), Gaps = 27/584 (4%)
Query: 11 EKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSL 70
+KK+WWL+NR+IVDKY++DARTLIATQEH E+++AL+L+DAALALSPRLE ALELKAR+L
Sbjct: 10 DKKNWWLTNREIVDKYVKDARTLIATQEHREVSAALNLIDAALALSPRLEQALELKARAL 69
Query: 71 LYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGR 130
L LRRFKDVADMLQDYIPS K+A +DS SD SSQQLS++RVKLL S +S G
Sbjct: 70 LCLRRFKDVADMLQDYIPSFKIAGEDS--TGSDGSSQQLSKDRVKLL-----GSSESPGC 122
Query: 131 DPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190
D +FKCFSVSDLKKKV+AGLC+NC KEGQWRYL+LGQACCHLGLMEDAMVLLQTGKRLAT
Sbjct: 123 DSTFKCFSVSDLKKKVLAGLCKNCNKEGQWRYLILGQACCHLGLMEDAMVLLQTGKRLAT 182
Query: 191 AAFRRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLLSHIKLLLRRRT 248
AAFRRESI S+DSF S FP S++ T PP TPPR +++SE+++ LLSHIKLL+RRRT
Sbjct: 183 AAFRRESICRSEDSFSLSDFPFSSDISTTNPPNTPPRALSDSETITNLLSHIKLLIRRRT 242
Query: 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKT 308
AA+AALDAGLY+EAIRHFSKIVDGRRGAPQGFLAECYM+RA AYRS+GRIAESIADCN+T
Sbjct: 243 AALAALDAGLYAEAIRHFSKIVDGRRGAPQGFLAECYMYRASAYRSAGRIAESIADCNRT 302
Query: 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYR 368
LAL PSCIQAL+TRALL E+IRCLPDCLHDLEHLKLLYN ILRDRKLPGPAWKR N+RYR
Sbjct: 303 LALNPSCIQALETRALLFESIRCLPDCLHDLEHLKLLYNTILRDRKLPGPAWKRQNMRYR 362
Query: 369 EIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
EIPGKLCALT KIQELKQRVASGETGNVDYY+LIGLRRGCSRSEL+RAHLLL LRHKPDK
Sbjct: 363 EIPGKLCALTVKIQELKQRVASGETGNVDYYSLIGLRRGCSRSELDRAHLLLCLRHKPDK 422
Query: 429 AISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAEKRRK---- 484
A +F ERCE AD+RD+DSVRD+AKMSALLLYR+LQ+GYSS+ + I DEEAAEK+RK
Sbjct: 423 ATNFIERCELADDRDIDSVRDKAKMSALLLYRMLQKGYSSITATIADEEAAEKQRKKAAA 482
Query: 485 -------TATAVTALQAATQVQQQAQNSLLEQE-VKLETTAAASSLETTGAKIINSNDLN 536
A V Q Q QQQAQ LLE E +K T + L+T + I ++D
Sbjct: 483 ALQAAQAAAIQVQQQQQQQQQQQQAQECLLEMELIKAATKTQSKPLKT---EQITASDTK 539
Query: 537 KGPSSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
SS++ + YQG+FCRD+AAVGNLLSQ G NRPL VKYEALSC
Sbjct: 540 ---SSNDKSTYQGVFCRDLAAVGNLLSQVGLNRPLPVKYEALSC 580
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128364|ref|XP_002320311.1| predicted protein [Populus trichocarpa] gi|222861084|gb|EEE98626.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/586 (75%), Positives = 486/586 (82%), Gaps = 62/586 (10%)
Query: 2 ATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL 61
+TSP L+ EKKHWWLSNRKIVDKYI+DAR LIA+QE SEIASAL+LLDAALALSPR E+
Sbjct: 4 STSPCLSGNEKKHWWLSNRKIVDKYIKDARNLIASQEMSEIASALNLLDAALALSPRFEV 63
Query: 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS-QQLSRERVKLLHSG 120
ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS+S+ SS QQLSRERV LL S
Sbjct: 64 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSISASDSSSQQLSRERVNLLPSE 123
Query: 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180
DPSFKCFSVSDLKKKVMAGLC+NC+KEGQWRYLVLGQACCHLGLMEDAMV
Sbjct: 124 KT--------DPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLVLGQACCHLGLMEDAMV 175
Query: 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN--HQTPPATPPRTMTESESVSQLLS 238
LLQTGKRL TAAFRRESIS S+DSF FS FPVS++ T P TPPR +TESES+ QLL+
Sbjct: 176 LLQTGKRLTTAAFRRESISWSEDSFSFSNFPVSSDISTSTAPPTPPRNLTESESIPQLLA 235
Query: 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI 298
HIKLLLRRRTAA+AAL+AGLYSEAIRHF+KIV+GRRGAPQGFLAECYMHRAFAY++SGRI
Sbjct: 236 HIKLLLRRRTAALAALNAGLYSEAIRHFTKIVEGRRGAPQGFLAECYMHRAFAYKASGRI 295
Query: 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGP 358
AESIADCNKTLAL+P+CIQALDTRA LLETIRCLPDCLHDLEHLKLLYN+ILRDRKLPGP
Sbjct: 296 AESIADCNKTLALDPTCIQALDTRAFLLETIRCLPDCLHDLEHLKLLYNSILRDRKLPGP 355
Query: 359 AWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHL 418
AWKRHNV YREIPGKLCAL+TKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHL
Sbjct: 356 AWKRHNVGYREIPGKLCALSTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHL 415
Query: 419 LLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEA 478
LLSLRHKPDK+I+F ERCEFAD+RDLDSV+DRAKMSALLLYRLLQ+GYS+VMS IMDE
Sbjct: 416 LLSLRHKPDKSINFIERCEFADDRDLDSVKDRAKMSALLLYRLLQKGYSNVMSTIMDE-- 473
Query: 479 AEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDLNK- 537
E +G+ IN ND NK
Sbjct: 474 --------------------------------------------EISGSDRINWND-NKV 488
Query: 538 ---GPSSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S+ A V+QG+FCRD+AAVGNLLSQ GF+RP+ +KYEALSC
Sbjct: 489 SSASAGSTAAPVFQGVFCRDLAAVGNLLSQGGFSRPIPMKYEALSC 534
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505620|ref|XP_003521588.1| PREDICTED: uncharacterized protein LOC100800231 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/585 (72%), Positives = 487/585 (83%), Gaps = 25/585 (4%)
Query: 3 TSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELA 62
T+ L+ TEKKHWWL+NRKIV+KYI+DAR+LIATQ+ SEIASAL+L+DAALA+SPR + A
Sbjct: 4 TTRTLSATEKKHWWLTNRKIVEKYIKDARSLIATQDQSEIASALNLVDAALAISPRFDQA 63
Query: 63 LELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS-----QQLSRERVKLL 117
LEL+AR+LLYLRRFK+VADMLQDYIPSL+M NDDS S SS SSS QQLSRE VKLL
Sbjct: 64 LELRARALLYLRRFKEVADMLQDYIPSLRMGNDDSSSSSSSSSSSDTSSQQLSREGVKLL 123
Query: 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177
SS +S RD SFKCFSVSDLKKKVMAGLC+ C+KEGQWRYLVLG+ACCHLGLMED
Sbjct: 124 ----SSSSESPVRDHSFKCFSVSDLKKKVMAGLCKTCDKEGQWRYLVLGEACCHLGLMED 179
Query: 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH-QTPPATPPRTM-TESESVSQ 235
AMVLLQTGKR+A+AAFRRES+ S+DSF + P S + PP+TPPRT+ +SESV+Q
Sbjct: 180 AMVLLQTGKRIASAAFRRESVCWSEDSFYVTNIPFSGDSTNAPPSTPPRTLLADSESVAQ 239
Query: 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS 295
LL HIK LLRRR AA+AALDAGLYSEAIRHFSKIVDGRR APQ FLAECYMHRA A+RS+
Sbjct: 240 LLGHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRSAPQSFLAECYMHRASAHRSA 299
Query: 296 GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKL 355
GRIAESIADCN+TLAL+P+CIQAL+TRA L ETIRCLPD LHDLEHLKLLYN+ILRDRKL
Sbjct: 300 GRIAESIADCNRTLALDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKL 359
Query: 356 PGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELER 415
PGPAWKRHNVRYREIPGKLC+LT KIQELKQR+ASGETGNVDYYALIG+RRGCSRSELER
Sbjct: 360 PGPAWKRHNVRYREIPGKLCSLTIKIQELKQRLASGETGNVDYYALIGVRRGCSRSELER 419
Query: 416 AHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475
AHLLLSLRHKPDKA F ERCE ADERD++SV++R KMS+LLLYRL+Q+GY++VM NIMD
Sbjct: 420 AHLLLSLRHKPDKATGFIERCELADERDVESVKERVKMSSLLLYRLVQKGYTNVMGNIMD 479
Query: 476 EEAAEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDL 535
EEAAEK+RK A A+ AL+A Q++ N E A + + + + ++ N
Sbjct: 480 EEAAEKQRKKA-ALQALEA----QKEKAN---------EAAAELNKVVESNSTQMSQNRS 525
Query: 536 NKGPSSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S+ N V+QG+FCRD+ VGNLLSQAGFNR + VKYEALSC
Sbjct: 526 MVSSSTVNPAVFQGVFCRDLTVVGNLLSQAGFNRSMPVKYEALSC 570
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572777|ref|XP_003554542.1| PREDICTED: uncharacterized protein LOC100808420 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/581 (73%), Positives = 487/581 (83%), Gaps = 15/581 (2%)
Query: 2 ATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL 61
T+ L+ TEKKHWWL+NRKIV+KYI+DAR+LIATQ+ SEIASAL+LLDAALA+SPR +
Sbjct: 3 VTTHTLSATEKKHWWLTNRKIVEKYIKDARSLIATQDQSEIASALNLLDAALAISPRFDQ 62
Query: 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121
ALEL+AR+LLYLRRFK+VADMLQDYIPSL+M NDDS S SS SSQQLSRE VKLL
Sbjct: 63 ALELRARALLYLRRFKEVADMLQDYIPSLRMGNDDS-SSSSSDSSQQLSREGVKLL---- 117
Query: 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181
SS +S RD SFKCFSVSDLKKKVMAGLC+ C+KEGQWRYLVLG+ACCHLGLMEDAMVL
Sbjct: 118 SSSSESPVRDHSFKCFSVSDLKKKVMAGLCKTCDKEGQWRYLVLGEACCHLGLMEDAMVL 177
Query: 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH-QTPPATPPRTM-TESESVSQLLSH 239
LQTGKR+A+AAFRRES+ S+DSF + P S + PP+TPPRT+ +SESV+QLL H
Sbjct: 178 LQTGKRIASAAFRRESVCWSEDSFCVTNIPFSGDSTNAPPSTPPRTLLADSESVAQLLGH 237
Query: 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIA 299
IK LLRRR AA+AALDAGLYSEA+RHFSKIVDGRR APQ FLAECYMHRA A+RS+GRIA
Sbjct: 238 IKFLLRRRAAALAALDAGLYSEAVRHFSKIVDGRRSAPQSFLAECYMHRASAHRSAGRIA 297
Query: 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPA 359
ESIADCN+TLAL+P+CIQAL+TRA L ETIRCLPD LHDLEHLKLLYN+ILRDRKLPGPA
Sbjct: 298 ESIADCNRTLALDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNSILRDRKLPGPA 357
Query: 360 WKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLL 419
WKRHNVRYREIPGKLCALT KIQELKQR+ASGETGNVDYYALIG+RRGCSRSELERAHLL
Sbjct: 358 WKRHNVRYREIPGKLCALTIKIQELKQRLASGETGNVDYYALIGVRRGCSRSELERAHLL 417
Query: 420 LSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAA 479
LSLRHKPDKA F ERCE ADERD++SV++R KMS+LLLYRL+Q+GY++VM NIMDEEAA
Sbjct: 418 LSLRHKPDKATGFIERCELADERDVESVKERVKMSSLLLYRLVQKGYTNVMGNIMDEEAA 477
Query: 480 EKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDLNKGP 539
EK+RK A ALQ A Q Q++ N E +E+ SS+E T + +
Sbjct: 478 EKQRKKA----ALQ-AIQAQKEKANEAAELNKVVESN--RSSVENTNTNNTQNRSMVSS- 529
Query: 540 SSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S+ N V+QG+FCRD+ VGNLLSQAGFNR + VKYEALSC
Sbjct: 530 STVNPAVFQGVFCRDLTVVGNLLSQAGFNRSMPVKYEALSC 570
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147827540|emb|CAN62070.1| hypothetical protein VITISV_036192 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/583 (73%), Positives = 474/583 (81%), Gaps = 44/583 (7%)
Query: 1 MATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSL-LDAALALSPRL 59
MATSP++ EKKHWWL N+K AR+ LS+ +AAL LSPR
Sbjct: 1 MATSPSVAGGEKKHWWLRNKK------NRARS-----------QQLSISWNAALGLSPRF 43
Query: 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119
E+ALELKARSLLYLRRFKDVADMLQDYIPSLKM S SSD+SSQQLSRERVKLL S
Sbjct: 44 EVALELKARSLLYLRRFKDVADMLQDYIPSLKMV---SDDSSSDNSSQQLSRERVKLLSS 100
Query: 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179
+SS DS RDPSFKCFSVSDLKKKVMAGLC+NCEKEGQWRYLVLGQACCHLGLMEDAM
Sbjct: 101 SNNSSSDSPIRDPSFKCFSVSDLKKKVMAGLCKNCEKEGQWRYLVLGQACCHLGLMEDAM 160
Query: 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLL 237
VLLQTGKRLA AA RRESI SDDSF S FP++N+ T PATPPRT E ES++QLL
Sbjct: 161 VLLQTGKRLAMAALRRESICWSDDSFSLSNFPITNDITTNNAPATPPRT--EFESITQLL 218
Query: 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297
SHIKLLLRR+TAA+AALDAGLYSEAIRHFSKI+DGRRGAPQGFL+EC+MHRA AYRS+GR
Sbjct: 219 SHIKLLLRRKTAALAALDAGLYSEAIRHFSKILDGRRGAPQGFLSECFMHRATAYRSAGR 278
Query: 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357
IAESIADCN+TLAL+P+CIQAL TRA LLE+IRCLPDCLHDLEHLKLLYN+ILRDRKLPG
Sbjct: 279 IAESIADCNRTLALDPTCIQALSTRASLLESIRCLPDCLHDLEHLKLLYNSILRDRKLPG 338
Query: 358 PAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAH 417
PAWKRHNV+YREIPGKLCAL+TKIQELKQRV SGETGNVDYYALIGLRRGCSRSELERAH
Sbjct: 339 PAWKRHNVQYREIPGKLCALSTKIQELKQRVVSGETGNVDYYALIGLRRGCSRSELERAH 398
Query: 418 LLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEE 477
LLL LRHKPDKA +F ERCEF+D+RDLDSV+DRAKMSALLLYRLLQ+GYSSVM+ IMDEE
Sbjct: 399 LLLCLRHKPDKATNFVERCEFSDDRDLDSVKDRAKMSALLLYRLLQKGYSSVMATIMDEE 458
Query: 478 AAEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSNDLNK 537
AAEK+RK A A A Q Q Q ++E +LE A A+ + T
Sbjct: 459 AAEKQRKKAAAALQATAIQAQQTQEQP---KKESELENQATAAPQQQT------------ 503
Query: 538 GPSSSNANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S A+V+QG+FCRD+A VGNLLSQAGFNR + VKYEALSC
Sbjct: 504 ----STASVFQGVFCRDLAVVGNLLSQAGFNRQIPVKYEALSC 542
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511329|ref|XP_003625953.1| hypothetical protein MTR_7g109360 [Medicago truncatula] gi|355500968|gb|AES82171.1| hypothetical protein MTR_7g109360 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/587 (71%), Positives = 483/587 (82%), Gaps = 23/587 (3%)
Query: 2 ATSPALTCTEKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL 61
T+ +LT TEKKHWWL+NRKIV+KYI+DAR+LIATQE SEI SAL+LLDAALA+SPRL+
Sbjct: 3 VTTHSLTATEKKHWWLTNRKIVEKYIKDARSLIATQEQSEILSALNLLDAALAISPRLDQ 62
Query: 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD---SGSVSSDSSSQQLSRERVKLLH 118
ALEL+ARSLLYLRRFKDVADMLQDYIPSL+M N+D S SS SS SRE VKLL
Sbjct: 63 ALELRARSLLYLRRFKDVADMLQDYIPSLRMTNEDPSSGSSSSSSSSDSSSSREGVKLL- 121
Query: 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178
S DS RD SFKCFSVSDLKKKVMAGLC++CEKEGQWRYLVLG+ACCHLGLMEDA
Sbjct: 122 -----SSDSPVRDQSFKCFSVSDLKKKVMAGLCKSCEKEGQWRYLVLGEACCHLGLMEDA 176
Query: 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP---PATPPRT-MTESESVS 234
MVLLQTGKR+A+AAFRRES+ SDDSFP P++ + TP P TPPR + E+ESV+
Sbjct: 177 MVLLQTGKRIASAAFRRESVCWSDDSFPLLTIPLAGD--TPNQQPTTPPRAPLNETESVT 234
Query: 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294
LLSHIK LLRRR AA+AALDAGLYSEAIRHFSKIVDGRR APQGFLAECYMHRA A+RS
Sbjct: 235 HLLSHIKFLLRRRAAALAALDAGLYSEAIRHFSKIVDGRRAAPQGFLAECYMHRASAHRS 294
Query: 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRK 354
+GRIAESIADCN+TL+L+P+CIQAL+TRA L E IRCLPD LHDLEHLKLLYN+ILRDRK
Sbjct: 295 AGRIAESIADCNRTLSLDPTCIQALETRASLFEAIRCLPDSLHDLEHLKLLYNSILRDRK 354
Query: 355 LPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELE 414
LPGPAWKRHNVRYREIPGKLCALTTKIQELKQR++SGET +VDYYALIG+RRGCSRSELE
Sbjct: 355 LPGPAWKRHNVRYREIPGKLCALTTKIQELKQRLSSGETTSVDYYALIGVRRGCSRSELE 414
Query: 415 RAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474
RAHLLL LRHKPDKA +F ERCEFADERD+D+V+++AKM +LLLYRL+Q+GY+SVMSN++
Sbjct: 415 RAHLLLCLRHKPDKATNFIERCEFADERDIDTVKEKAKMCSLLLYRLVQKGYTSVMSNVL 474
Query: 475 DEEAAEKRRKTATAVTALQAATQVQQQAQNSLLEQEVKLETTAAASSLETTGAKIINSND 534
DEEAAEK+RK A A A +Q Q + + E +L+ A E + + ND
Sbjct: 475 DEEAAEKQRKKNVAAAAQAQAAAIQVQVKKT---NEAELKNNKA----ENKSSNVFVEND 527
Query: 535 LNKGPSSS-NANVYQGIFCRDIAAVGNLLSQAGFNRPLTVKYEALSC 580
S + N V+QG+FCRD+A VG+LL+QA FNR + VKYEALSC
Sbjct: 528 QPLISSCTVNPAVFQGVFCRDLAVVGSLLTQARFNRTMPVKYEALSC 574
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436435|ref|XP_004135998.1| PREDICTED: uncharacterized protein LOC101222380 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/476 (79%), Positives = 429/476 (90%), Gaps = 9/476 (1%)
Query: 11 EKKHWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSL 70
+KK+WWL+NRKIVDKY++DARTLIATQEH E+++AL+L+DAALALSPRLE ALELKAR+L
Sbjct: 10 DKKNWWLTNRKIVDKYVKDARTLIATQEHREVSAALNLIDAALALSPRLEQALELKARAL 69
Query: 71 LYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGR 130
L LRRFKDVADMLQDYIPS K+A +DS SD SSQQLS++RVKLL S +S G
Sbjct: 70 LCLRRFKDVADMLQDYIPSFKIAGEDS--TGSDGSSQQLSKDRVKLL-----GSSESPGC 122
Query: 131 DPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190
D +FKCFSVSDLKKKV+AGLC+NC KEGQWRYL+LGQACCHLGLMEDAMVLLQTGKRLAT
Sbjct: 123 DSTFKCFSVSDLKKKVLAGLCKNCNKEGQWRYLILGQACCHLGLMEDAMVLLQTGKRLAT 182
Query: 191 AAFRRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLLSHIKLLLRRRT 248
AAFRRESI S+DSF S FP S++ T PP TPPR +++SE+++ LLSHIKLL+RRRT
Sbjct: 183 AAFRRESICRSEDSFSLSDFPFSSDISTTNPPNTPPRALSDSETITNLLSHIKLLIRRRT 242
Query: 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKT 308
AA+AALDAGLY+EAIRHFSKIVDGRRGAPQGFLAECYM+RA AYRS+GRIAESIADCN+T
Sbjct: 243 AALAALDAGLYAEAIRHFSKIVDGRRGAPQGFLAECYMYRASAYRSAGRIAESIADCNRT 302
Query: 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYR 368
LAL PSCIQAL+TRALL E+IRCLPDCLHDLEHLKLLYN ILRDRKLPGPAWKR N+RYR
Sbjct: 303 LALNPSCIQALETRALLFESIRCLPDCLHDLEHLKLLYNTILRDRKLPGPAWKRQNMRYR 362
Query: 369 EIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428
EIPGKLCALT KIQELKQRVASGETGNVDYY+LIGLRRGCSRSEL+RAHLLL LRHKPDK
Sbjct: 363 EIPGKLCALTVKIQELKQRVASGETGNVDYYSLIGLRRGCSRSELDRAHLLLCLRHKPDK 422
Query: 429 AISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAEKRRK 484
A +F ERCE AD+RD+DSVRD+AKMSALLLYR+LQ+GYSS+ + I DEEAAEK+RK
Sbjct: 423 ATNFIERCELADDRDIDSVRDKAKMSALLLYRMLQKGYSSITATIADEEAAEKQRK 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 580 | ||||||
| TAIR|locus:2132183 | 546 | AT4G02100 [Arabidopsis thalian | 0.803 | 0.853 | 0.639 | 3.7e-172 | |
| TAIR|locus:2096114 | 552 | AT3G62570 [Arabidopsis thalian | 0.805 | 0.846 | 0.599 | 2.2e-165 | |
| TAIR|locus:2062052 | 526 | AT2G47440 [Arabidopsis thalian | 0.579 | 0.638 | 0.724 | 3.6e-148 | |
| TAIR|locus:2196050 | 513 | AT1G02650 [Arabidopsis thalian | 0.582 | 0.658 | 0.612 | 3.7e-118 | |
| TAIR|locus:505006611 | 1165 | TPR16 "AT5G12430" [Arabidopsis | 0.35 | 0.174 | 0.255 | 6.4e-13 | |
| TAIR|locus:2062724 | 1108 | TPR15 "tetratricopeptide repea | 0.420 | 0.220 | 0.256 | 1.6e-10 |
| TAIR|locus:2132183 AT4G02100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1548 (550.0 bits), Expect = 3.7e-172, Sum P(2) = 3.7e-172
Identities = 307/480 (63%), Positives = 365/480 (76%)
Query: 11 EKKHWWLSNRKIVDKYIRDARTLIATQEHSEIXXXXXXXXXXXXXXPRLELALELKARSL 70
EKKHWWL N+KIVDKY+++A++LIA+Q+ +++ PR ELALELKARSL
Sbjct: 6 EKKHWWLRNKKIVDKYMKEAKSLIASQDPNDVKSALNLLESALSVSPRYELALELKARSL 65
Query: 71 LYLRRFKDVADMLQDYIPSLKMANXXXXXXXXXXXXQ--QLSRERVKXXXXXXXXXXXXX 128
LYLRR+KDVADMLQDYIPSLK+A SRE VK
Sbjct: 66 LYLRRYKDVADMLQDYIPSLKLAGGGEDSGIGSSELSFTHSSRESVKLLNDLPSHHHH-- 123
Query: 129 XRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188
D SFKCFSVSDLKKKVMAGL +NC+++GQWRYLVLGQACCHLGLMEDAMVLLQTGKRL
Sbjct: 124 -HDSSFKCFSVSDLKKKVMAGLTKNCDEQGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 182
Query: 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE---SESVSQLLSHIKXXXX 245
ATAAFRR+SI SDDSF F + +PP++ T SES++ +LSHIK
Sbjct: 183 ATAAFRRQSICWSDDSFIL--FSSEDGGSSPPSSVVVTSASQPRSESIAHVLSHIKLLLR 240
Query: 246 XXXXXXXXXXXXXYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADC 305
Y+E+IRHFSKI+D RRGAPQGFLA+C+MHRA AYRS+GRIAESIADC
Sbjct: 241 RRAAALAALDAGLYTESIRHFSKILDSRRGAPQGFLAQCFMHRASAYRSAGRIAESIADC 300
Query: 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNV 365
NKTLAL+PSC+QAL+TRA LLE++RC PD LHDLEHLKLLYN+ILRDRKLPGP WKRHNV
Sbjct: 301 NKTLALDPSCLQALETRAALLESVRCFPDSLHDLEHLKLLYNSILRDRKLPGPVWKRHNV 360
Query: 366 RYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHK 425
RYREIPGKLC LTTKIQ+LKQ++A+GE GNVDYYAL+G+RR CSRSEL+RA+LLL+L+HK
Sbjct: 361 RYREIPGKLCVLTTKIQQLKQKIANGEIGNVDYYALMGIRRDCSRSELDRAYLLLNLKHK 420
Query: 426 PDKAISFTERCEFAD-ERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAEKRRK 484
P++++SF +R E D E +LDSV+DRA+MS LLLYRL+Q+GYS V SNI A EK+RK
Sbjct: 421 PERSMSFIDRFELTDDEEELDSVKDRARMSTLLLYRLIQKGYSVVTSNIA---AVEKQRK 477
|
|
| TAIR|locus:2096114 AT3G62570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 2.2e-165, Sum P(2) = 2.2e-165
Identities = 284/474 (59%), Positives = 356/474 (75%)
Query: 11 EKKHWWLSNRKIVDKYIRDARTLIATQEHSEIXXXXXXXXXXXXXXPRLELALELKARSL 70
+KKHWW +++KIVDKYI+DAR+L+ ++E +++ PR E ALELKARSL
Sbjct: 10 DKKHWWFTHKKIVDKYIKDARSLMESEEQNDVASAIHLLDAALSISPRSETALELKARSL 69
Query: 71 LYLRRFKDVADMLQDYIPSLKMA-NXXXXXXXXXXXXQQLSRERVKXXXXXXXXXXXXXX 129
L+LRRFKDV DMLQDYIPSLK+A N S ++
Sbjct: 70 LFLRRFKDVVDMLQDYIPSLKLAVNEEDGSYSYEGSSYSSSSSQLSRKLLSDSSPR---- 125
Query: 130 RDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189
RD SFKCFSVS LKKK+MAG+C+N +++ QWRY+VLGQACCHLGLMEDA+VLLQTGKRLA
Sbjct: 126 RDSSFKCFSVSYLKKKIMAGICKNRDQDKQWRYVVLGQACCHLGLMEDALVLLQTGKRLA 185
Query: 190 TAAFRRESISLSDDSFPFSKFPVSNNHQTPP-ATPPRTMTESESVSQLLSHIKXXXXXXX 248
T FRR S+SLSDDS S++ + A PPR ++E E+V+ LL+H K
Sbjct: 186 TVEFRRLSVSLSDDSVSLLLSESSSSSSSSSYAFPPRKVSECETVTNLLAHTKNLLRRRS 245
Query: 249 XXXXXXXXXXYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNK 307
++++IRHFSKI+DGRR APQGFLA+CYMHRA AY+S+G+IAE+IADCNK
Sbjct: 246 AGFAAFDAGLFADSIRHFSKILDGRRRPAPQGFLADCYMHRAAAYKSAGKIAEAIADCNK 305
Query: 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRY 367
TLALEPSCI AL+TRA LLET+RCLPD LHDLEHLK+LYN ILRDRKLPGP WKRHNV+Y
Sbjct: 306 TLALEPSCIHALETRATLLETVRCLPDSLHDLEHLKILYNTILRDRKLPGPPWKRHNVKY 365
Query: 368 REIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPD 427
REIPGKLC LTTK ++LK ++A+GE GNVDYY L+G+RRGC+RSEL+RA+LLL LRHKPD
Sbjct: 366 REIPGKLCELTTKSKKLKAKMANGEIGNVDYYGLVGVRRGCTRSELDRANLLLCLRHKPD 425
Query: 428 KAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAEK 481
KA++F ERC+F D+ ++ SV+DRAKMS+LLLYRL+QRGY+++ + I +EE +K
Sbjct: 426 KALAFMERCDFFDQSEISSVKDRAKMSSLLLYRLIQRGYTALAAAIAEEEQRKK 479
|
|
| TAIR|locus:2062052 AT2G47440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1303 (463.7 bits), Expect = 3.6e-148, Sum P(2) = 3.6e-148
Identities = 250/345 (72%), Positives = 287/345 (83%)
Query: 133 SFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAA 192
SFKCFSVSDLKKKVMAG+C+ C+KEGQWRY+VLGQACCHLGLMEDAMVLLQTGKRLA+A
Sbjct: 119 SFKCFSVSDLKKKVMAGICKKCDKEGQWRYVVLGQACCHLGLMEDAMVLLQTGKRLASAE 178
Query: 193 FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKXXXXXXXXXXX 252
FRR SI SDDSF S++ +PP P ESE+ + LL+HIK
Sbjct: 179 FRRRSICWSDDSFLL--LSESSSASSPP---P----ESENFTHLLAHIKLLLRRRAAAIA 229
Query: 253 XXXXXXYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE 312
+SE+IRHFSKIVDGRR APQGFLAECYMHRA AYRS+GRIAE+IADCNKTLALE
Sbjct: 230 ALDAGLFSESIRHFSKIVDGRRPAPQGFLAECYMHRAAAYRSAGRIAEAIADCNKTLALE 289
Query: 313 PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPG 372
PSCIQAL+TRA LLET+RC PD LHDLEHLKLLYN ILRDRKLPGP WKRHNV+YREIPG
Sbjct: 290 PSCIQALETRAALLETVRCFPDSLHDLEHLKLLYNTILRDRKLPGPVWKRHNVKYREIPG 349
Query: 373 KLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISF 432
KLC LTTK Q+LKQ++A+GETGNVDYY LIG+RRGC+RSEL+RAHLLL LR+KPD+A SF
Sbjct: 350 KLCVLTTKTQKLKQKIANGETGNVDYYGLIGVRRGCTRSELDRAHLLLCLRYKPDRASSF 409
Query: 433 TERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEE 477
ERCEF D+ D+DSVRDRAKMS+LLLYRL+Q+GY++V + I +E+
Sbjct: 410 IERCEFTDQNDVDSVRDRAKMSSLLLYRLIQKGYTAVTAIIAEEQ 454
|
|
| TAIR|locus:2196050 AT1G02650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 3.7e-118, Sum P(2) = 3.7e-118
Identities = 213/348 (61%), Positives = 265/348 (76%)
Query: 131 DPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190
D SFKCFS S LKKKVMAGL N + +GQWRYLVLGQAC HLGLM+DA++LLQTGKRLAT
Sbjct: 113 DSSFKCFSYSYLKKKVMAGLSNNSQVQGQWRYLVLGQACYHLGLMDDAIILLQTGKRLAT 172
Query: 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKXXXXXXXXX 250
A RRESI S+DSF S ++ Q P+ +TESE VSQ+LS K
Sbjct: 173 AELRRESICWSEDSFNLS----TSESQ------PQPITESEIVSQMLSQTKLFLRRRTAA 222
Query: 251 XXXXXXXXYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310
YSE+IRHFSKI+D RRGAPQ FL C + RAFAY+S+GRIA+SIADCN LA
Sbjct: 223 LAALDAGLYSESIRHFSKIIDSRRGAPQSFLVYCLIRRAFAYKSAGRIADSIADCNLILA 282
Query: 311 LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREI 370
LEPSCI+AL+TRA L +IRC PD LHDLEHLKLL+N+ILRDR L GP WKRHNVRYREI
Sbjct: 283 LEPSCIEALETRAELFRSIRCFPDSLHDLEHLKLLFNSILRDRSLTGPVWKRHNVRYREI 342
Query: 371 PGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAI 430
PGKLC LTT I+++K+++ + E GN DYY+L+G+ RGCSRSEL RA+LLL+LR+K ++++
Sbjct: 343 PGKLCVLTTNIKQMKEKITNRENGNEDYYSLMGIERGCSRSELNRAYLLLNLRYKSERSM 402
Query: 431 SFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEA 478
+ +R + DE++L SV++RA+MS LLLYRL+Q+GY +V+S+I EA
Sbjct: 403 TSIDRFDIIDEQELVSVKNRARMSTLLLYRLIQKGYYAVLSDIETVEA 450
|
|
| TAIR|locus:505006611 TPR16 "AT5G12430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 55/215 (25%), Positives = 111/215 (51%)
Query: 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318
++EA+ H++ + + F A C+ +RA AY++ G+ +++IADC+ +AL+ + +A
Sbjct: 895 HTEAVEHYTAAL-ACNVESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQNYSKA 953
Query: 319 LDTRALLLETIRCLPDCLHDLE-HLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCAL 377
+ RA L E IR D+E ++ +L + + K G R + +
Sbjct: 954 ISRRATLFEMIRDYGQAASDMERYVNILTKQM--EEKTSGTL-----DRSTSMSNDIRQA 1006
Query: 378 TTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCE 437
++ EL+++ S + ++D Y ++G+ CS S++ +A+ +L+H PDKA R E
Sbjct: 1007 RIRLSELEEK--SRKENSLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQSLTRNE 1064
Query: 438 FADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472
DER + + + L++++ Y+ V+S+
Sbjct: 1065 TKDERLWKEIGEEVRKDTDKLFKMIGEAYA-VLSD 1098
|
|
| TAIR|locus:2062724 TPR15 "tetratricopeptide repeat 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 66/257 (25%), Positives = 121/257 (47%)
Query: 231 ESVSQLLSHIKXXXXXXXXXXXXXXXXXYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAF 290
ES + L++ I Y EA+ ++ + R + F A C+ +RA
Sbjct: 820 ESPASLVATISELLRYKNAGNEAVRDRKYMEAVEQYTAALS-RNVDSRPFAAICFCNRAA 878
Query: 291 AYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350
A ++ +IA++IADC+ +AL+ + +A+ RA L E IR DL+ L +
Sbjct: 879 ANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISILVKQS 938
Query: 351 RDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR 410
K P + R + R +E+ K + E K + E ++D++ ++G++ S
Sbjct: 939 DKTKTPETSVDRASSR-KEL--KQARQRLSVMEEKSK----EGIHLDFFLIMGVKTSDSA 991
Query: 411 SELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470
+++++A+ +LRH PDKA R E ++ L + + A L++++ YS V+
Sbjct: 992 ADIKKAYRKAALRHHPDKAAQILVRSE-SEGPWLKEILEEVHKGADRLFKMIGEAYS-VL 1049
Query: 471 SNIM---DEEAAEKRRK 484
S+ D E E+ RK
Sbjct: 1050 SDPTKRSDYELEEEIRK 1066
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 580 | |||
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 5e-06 | |
| cd06257 | 55 | cd06257, DnaJ, DnaJ domain or J-domain | 8e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-05 | |
| smart00271 | 60 | smart00271, DnaJ, DnaJ molecular chaperone homolog | 1e-05 |
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-06
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCE 437
DYY ++G+ R S E+++A+ L+L++ PDK E
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEE 41
|
DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 |
| >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 8e-06
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKA 429
DYY ++G+ S E+++A+ L+L++ PDK
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKN 33
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311
G Y EA+ ++ K ++ A+ Y + A AY G+ E++ D K L L
Sbjct: 9 LYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAAYYKLGKYEEALEDYEKALEL 63
Query: 312 EPSCIQALDTRALLLETIRCLPDCLHDLE-HLKLLYN 347
+P +A L + + L E L+L N
Sbjct: 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-05
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCE 437
DYY ++G+ R S E+++A+ L+L++ PDK E E
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE 42
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 100.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.69 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.68 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.64 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.64 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.64 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.64 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.61 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.61 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.6 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.57 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.57 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.52 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.48 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.44 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.44 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.43 | |
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.41 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.4 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.35 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.32 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| KOG0713 | 336 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.29 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.29 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.25 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.24 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.23 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.23 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.2 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 99.19 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.17 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 99.14 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.1 | |
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.09 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.07 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG0717 | 508 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.04 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.04 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.03 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.98 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 98.97 | |
| smart00271 | 60 | DnaJ DnaJ molecular chaperone homology domain. | 98.96 | |
| KOG0712 | 337 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.96 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 98.95 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| KOG0718 | 546 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.93 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 98.93 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 98.93 | |
| KOG0691 | 296 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.93 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.91 | |
| PF00226 | 64 | DnaJ: DnaJ domain; InterPro: IPR001623 The prokary | 98.91 | |
| cd06257 | 55 | DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho | 98.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.9 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 98.9 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 98.89 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 98.88 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 98.88 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 98.88 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.88 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 98.87 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 98.87 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 98.86 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.86 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 98.86 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 98.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.85 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 98.84 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 98.83 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 98.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.81 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 98.8 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 98.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.8 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 98.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.8 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.79 | |
| KOG0716 | 279 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.76 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 98.75 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 98.74 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.74 | |
| KOG0719 | 264 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.74 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 98.73 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 98.72 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 98.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.71 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.71 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 98.7 | |
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 98.68 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 98.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.66 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.64 | |
| KOG0715 | 288 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.63 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.62 | |
| KOG0721 | 230 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.6 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.59 | |
| PTZ00100 | 116 | DnaJ chaperone protein; Provisional | 98.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.58 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.55 | |
| PRK05014 | 171 | hscB co-chaperone HscB; Provisional | 98.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.54 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.53 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PRK09430 | 267 | djlA Dna-J like membrane chaperone protein; Provis | 98.51 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.5 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.48 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.48 | |
| PHA03102 | 153 | Small T antigen; Reviewed | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.46 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.46 | |
| PRK01356 | 166 | hscB co-chaperone HscB; Provisional | 98.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.45 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.45 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.43 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.43 | |
| KOG0722 | 329 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.43 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 98.42 | |
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 98.41 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.4 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.4 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.39 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.36 | |
| PRK03578 | 176 | hscB co-chaperone HscB; Provisional | 98.36 | |
| KOG0720 | 490 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.35 | |
| PRK00294 | 173 | hscB co-chaperone HscB; Provisional | 98.35 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.33 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.27 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.19 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.19 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.18 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.18 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.09 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 98.07 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.05 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.01 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.0 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.98 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.98 | |
| KOG0714 | 306 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.96 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.82 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.71 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.68 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.67 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.62 | |
| KOG1150 | 250 | consensus Predicted molecular chaperone (DnaJ supe | 97.62 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.62 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.6 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.59 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 97.57 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.54 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.43 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.41 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.36 | |
| TIGR00714 | 157 | hscB Fe-S protein assembly co-chaperone HscB. This | 97.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.31 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.27 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 97.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.25 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.13 | |
| COG5269 | 379 | ZUO1 Ribosome-associated chaperone zuotin [Transla | 97.06 | |
| KOG0568 | 342 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.98 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.92 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.9 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.86 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 96.85 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.81 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 96.69 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.48 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.4 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.39 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.28 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.23 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 96.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.13 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.07 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 96.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.0 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.98 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.9 | |
| KOG0723 | 112 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.86 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.79 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.73 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.73 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.58 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.36 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.33 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.22 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.07 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.83 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 94.81 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 94.66 | |
| KOG0431 | 453 | consensus Auxilin-like protein and related protein | 94.38 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.36 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.2 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.11 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.07 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.93 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.87 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 93.8 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 93.5 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.34 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 93.31 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.06 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.86 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 92.85 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 92.81 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.79 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 92.77 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 92.75 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.61 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 92.48 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 92.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.01 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.99 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 91.84 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 91.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.53 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.12 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.07 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 90.85 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.83 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 90.63 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.52 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.45 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.33 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 90.32 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 90.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 90.17 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 90.17 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 90.12 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.98 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 89.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.63 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.59 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.22 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.09 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 88.91 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.85 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 88.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 88.58 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 88.46 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.21 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 88.16 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 88.15 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.39 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.25 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 87.16 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.14 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.48 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.46 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.41 | |
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 85.2 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 83.88 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.02 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.91 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.78 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 82.37 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 82.0 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 81.67 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 80.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 80.55 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.53 |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=317.66 Aligned_cols=359 Identities=21% Similarity=0.260 Sum_probs=275.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..++.-..+-..+ .+.+|..||..|+.||++.|+++.+|.+||.+|++++||++|.-+.++.+ ++.+..+-...
T Consensus 48 ~Ae~~k~~gn~~y---k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~---r~kd~~~k~~~ 121 (486)
T KOG0550|consen 48 QAEEAKEEGNAFY---KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV---RLKDGFSKGQL 121 (486)
T ss_pred HHHHHHhhcchHH---HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe---ecCCCcccccc
Confidence 4555666666666 57889999999999999999999999999999999999999999998844 44443332221
Q ss_pred CCc----hhhHhHHHHHhhhcCCC-----CCCC----CCCCCCCCcccccchHHHHHHHHhhh------------ccccc
Q 008039 102 SDS----SSQQLSRERVKLLHSGG-----DSSD----DSLGRDPSFKCFSVSDLKKKVMAGLC------------RNCEK 156 (580)
Q Consensus 102 ~~~----~~~~~~~~~~~ll~~~~-----~~~~----~~~~~~~~~~~~~~~~~~k~~~~~l~------------~~~~~ 156 (580)
-.. +.+.+ .+....+..-. ..+. ......+.-.||...+|+-.++.-+. ...+.
T Consensus 122 r~~~c~~a~~~~-i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 122 REGQCHLALSDL-IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred chhhhhhhhHHH-HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 111 00111 11111111000 0000 00001111234444455444443221 12233
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
....+.++.|.+++..++.+.|+.+|++++++ +|++......
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--------------------------------------dpdh~~sk~~ 242 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRL--------------------------------------DPDHQKSKSA 242 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhcc--------------------------------------ChhhhhHHhH
Confidence 44567778888999999999999999888765 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
...++.+...++.||.+|+.|+|..|.++|+.+|.+ +|.+...++.+|.|||.++.++|+..+||.+|+.|+.|||.++
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 999999999999999999999999999999999997 6877888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCcc
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNV 396 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~ 396 (580)
+||.++|.|+..+++|++|++||++++++. + .-++.+.++++. ..|++ +.++
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~-------~------------s~e~r~~l~~A~---~aLkk------SkRk 373 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE-------K------------DCEIRRTLREAQ---LALKK------SKRK 373 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------c------------ccchHHHHHHHH---HHHHH------hhhh
Confidence 999999999999999999999999998872 1 022333334433 34454 5689
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||++||+.+.+++.+|+++||+++|.||||++.+. ++.++.+|+.|.+||. +++|++
T Consensus 374 d~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-------------------q~eaE~kFkevgeAy~-il~d~~ 431 (486)
T KOG0550|consen 374 DWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-------------------QKEAEAKFKEVGEAYT-ILSDPM 431 (486)
T ss_pred hHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-------------------hHHHHHHHHHHHHHHH-HhcCHH
Confidence 999999999999999999999999999999998773 4899999999999999 788887
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.18 Aligned_cols=302 Identities=17% Similarity=0.231 Sum_probs=256.1
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
++.+.....++.....||+..|++.++..|++.|+++..+..||.||...|....||.+++.+- ++
T Consensus 153 ~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as---kL----------- 218 (504)
T KOG0624|consen 153 QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS---KL----------- 218 (504)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH---hc-----------
Confidence 3333444444444467999999999999999999999999999999999999999999888743 11
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
+.+ ....+|.+++.++..|+.+.++...+
T Consensus 219 --------------s~D-------------------------------------nTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 219 --------------SQD-------------------------------------NTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred --------------ccc-------------------------------------chHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 111 11256778999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.|+++ |||+..|..+++.++++.+..+.+......++|.+++
T Consensus 248 ECLKl--------------------------------------dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 248 ECLKL--------------------------------------DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHcc--------------------------------------CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99976 5999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+.+.+.++. +|...+.....+-.+|.|+..-|++.+||..|+++|.++|+++.++..||.+|+.-.+||+||.+|++|.
T Consensus 290 e~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 290 EAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999995 5655566677778889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhh
Q 008039 344 LLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLR 423 (580)
Q Consensus 344 ~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~ 423 (580)
++.+ . | .+.++...+++.++. ..++.|||+||||.++++..||-+|||++|++
T Consensus 369 e~n~---------s------n-------~~~reGle~Akrlkk-----qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqk 421 (504)
T KOG0624|consen 369 ELNE---------S------N-------TRAREGLERAKRLKK-----QSGKRDYYKILGVKRNASKQEITKAYRKLAQK 421 (504)
T ss_pred hcCc---------c------c-------HHHHHHHHHHHHHHH-----HhccchHHHHhhhcccccHHHHHHHHHHHHHh
Confidence 7721 1 1 223455666655543 26789999999999999999999999999999
Q ss_pred cCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 424 HKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 424 ~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
||||...+ +++++.|+.+|-+|..|.+| ++|+-
T Consensus 422 WHPDNFqd-----------------EeEKKkAEKKFIDIAAAKEV-Lsd~E 454 (504)
T KOG0624|consen 422 WHPDNFQD-----------------EEEKKKAEKKFIDIAAAKEV-LSDPE 454 (504)
T ss_pred cCCccccC-----------------HHHHHHHHHhhhhHHHHHHh-hcCHH
Confidence 99998765 34579999999999999995 55553
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=194.10 Aligned_cols=347 Identities=16% Similarity=0.130 Sum_probs=203.5
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
+.+++-.+-|-..|..+- +.|++..|+.+|..+|+++|.+..+|.++|.+|...|+.+.|..+|..+| +++|+.
T Consensus 110 r~~~q~ae~ysn~aN~~k---erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l 183 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILK---ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDL 183 (966)
T ss_pred hccchHHHHHHHHHHHHH---HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcch
Confidence 355655555555555553 56778888888888888888888888888888888888888888877744 455533
Q ss_pred CCCCCCCchhhH----h-----HHHHHhhhcCCCCCCCCCCCCCCCcccccc--hHHHHHHH-------------Hhhhc
Q 008039 97 SGSVSSDSSSQQ----L-----SRERVKLLHSGGDSSDDSLGRDPSFKCFSV--SDLKKKVM-------------AGLCR 152 (580)
Q Consensus 97 ~~~~~~~~~~~~----~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~-------------~~l~~ 152 (580)
.-..+...-..+ + ....+-...| ||.| ++|..-+. ..+
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp----------------~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQP----------------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCC----------------ceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 332222121100 0 0111111111 1111 11111111 111
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCC-------CCCCCCCCCCCCC
Q 008039 153 NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPV-------SNNHQTPPATPPR 225 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~-------~~~~~~~~~~~~~ 225 (580)
.-++....+|++||.+|..++.++.|+..|.+++.+.|. .....-+++. -+-++......+.
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-----------~A~a~gNla~iYyeqG~ldlAI~~Ykral~ 314 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-----------HAVAHGNLACIYYEQGLLDLAIDTYKRALE 314 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-----------chhhccceEEEEeccccHHHHHHHHHHHHh
Confidence 112233457999999999999999999999999987432 0001111110 0000111111223
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 226 TMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 226 ~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
..|....+...+ ||++-..|+..+|+.+|.++|.+ .|..+...+|+|.+|..+|.+++|+..|
T Consensus 315 ~~P~F~~Ay~Nl------------anALkd~G~V~ea~~cYnkaL~l-----~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 315 LQPNFPDAYNNL------------ANALKDKGSVTEAVDCYNKALRL-----CPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred cCCCchHHHhHH------------HHHHHhccchHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 344444443333 88888888888888888888887 3557888888888888888888888888
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHH
Q 008039 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELK 385 (580)
Q Consensus 306 ~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk 385 (580)
.++++..|.+..++.++|.+|.+.|++++|+..|+.++.+.+...+.- .|+ ....+++......++-..
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~---------~Nm--Gnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL---------SNM--GNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH---------Hhc--chHHHHhhhHHHHHHHHH
Confidence 888888888888888888888888888888888888887732211111 111 112233333333333332
Q ss_pred HHhhcCCCCccchhhhhcc-cCCCC-HHHHHHHHHHHHhhcCCCC
Q 008039 386 QRVASGETGNVDYYALIGL-RRGCS-RSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 386 ~~~~~~~~~~~d~y~iLgv-~~~a~-~~ei~~ayr~lal~~hPDk 428 (580)
..+... ..-.+-+..|+. .+++. -.+.-.+|+. ||+++||.
T Consensus 447 rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~-aLklkPDf 489 (966)
T KOG4626|consen 447 RAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRT-ALKLKPDF 489 (966)
T ss_pred HHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHH-HHccCCCC
Confidence 222211 122334555553 33332 3444456655 99999996
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-20 Score=193.34 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
..++||.+|..+|++++|+.+|.++++.. |+...+...+
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~--------------------------------------p~~aaa~nNL--- 394 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVF--------------------------------------PEFAAAHNNL--- 394 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhC--------------------------------------hhhhhhhhhH---
Confidence 56789999999999999999999998763 4455544444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.++-++|++++||.+|+++|.+ .|..+.+|.|+|..|..+|+...|+.+|++||.++|.+.+|+.
T Consensus 395 ---------a~i~kqqgnl~~Ai~~YkealrI-----~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhs 460 (966)
T KOG4626|consen 395 ---------ASIYKQQGNLDDAIMCYKEALRI-----KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHS 460 (966)
T ss_pred ---------HHHHHhcccHHHHHHHHHHHHhc-----CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHh
Confidence 88999999999999999999998 6779999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++|.+|...|+..+||..|+.+++|
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999988
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=186.88 Aligned_cols=259 Identities=15% Similarity=0.081 Sum_probs=179.9
Q ss_pred cccccchhhh----HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 13 KHWWLSNRKI----VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 13 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
+++|.-+++. ...+...|..++ ..|+|..|+..|+++|.+.|+ +.++.++|.||+.+|+|++|+++|.++|
T Consensus 113 ~~~~~~~~~~~~~~a~~~k~~G~~~~---~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al- 187 (615)
T TIGR00990 113 SSVANLSEEERKKYAAKLKEKGNKAY---RNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAAL- 187 (615)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHH-
Confidence 3444544443 334567777777 689999999999999999997 6889999999999999999999999966
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQA 168 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a 168 (580)
++.|++ ...|+.+|.+
T Consensus 188 --~l~p~~--------------------------------------------------------------~~a~~~~a~a 203 (615)
T TIGR00990 188 --ELDPDY--------------------------------------------------------------SKALNRRANA 203 (615)
T ss_pred --HcCCCC--------------------------------------------------------------HHHHHHHHHH
Confidence 333221 2468889999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHH--------hhh----------hhhcccCCCCCCC-----CCC--CCCCCCCCCCCCC
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATA--------AFR----------RESISLSDDSFPF-----SKF--PVSNNHQTPPATP 223 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~--------~~r----------~~~~~~~~d~~~~-----~~l--~~~~~~~~~~~~~ 223 (580)
|..+|++++|+..|..+..+.+- ..+ ...+......... ..+ .............
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 99999999999988766433210 000 0000000000000 000 0000000000001
Q ss_pred CCCCCC--------------------hHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 224 PRTMTE--------------------SESVSQLLSHIK--------LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 224 ~~~dPd--------------------~~~~~~ll~~~k--------~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+..+|+ ...+...+...- ....+...|..++..|++++|+..|.++|.+
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--- 360 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--- 360 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 111121 111112221111 1223455688999999999999999999997
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.....|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++..+|++++|+.+|++++++
T Consensus 361 --~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 361 --DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34578899999999999999999999999999999999999999999999999999999999999887
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=180.60 Aligned_cols=225 Identities=20% Similarity=0.226 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
+.-..+...+ ...++..|+..|+.+++++ .+..++.++|.+++.+|.|.+++..|.+++..-..
T Consensus 226 ~ek~lgnaay---kkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre------------ 289 (539)
T KOG0548|consen 226 KEKELGNAAY---KKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE------------ 289 (539)
T ss_pred HHHHHHHHHH---HhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH------------
Confidence 3444445555 5678999999999999999 99999999999999999999999999996632111
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+...++ ++. .+..+|.+|..+|+++.|+.+|++
T Consensus 290 -----~rad~kl------------------------------Iak-----------~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 290 -----LRADYKL------------------------------IAK-----------ALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred -----HHHHHHH------------------------------HHH-----------HHHHhhhhhhhHHhHHHHHHHHHH
Confidence 0111111 111 133478999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ-----LLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~-----ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
++.-. |.+ +.+.. ..+-+.... .+.........+.+||.+|+.|+|
T Consensus 324 aLte~----Rt~------~~ls~-------------------lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 324 ALTEH----RTP------DLLSK-------------------LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred Hhhhh----cCH------HHHHH-------------------HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 87431 110 00000 000000000 001112245567889999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..||.+|+++|.. .|.++.+|+|||.||.++|.+..|+.||+.+|++||+++++|++.|.++..+.+|+.|+..|
T Consensus 375 ~~Av~~YteAIkr-----~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR-----DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 45689999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
+.++++
T Consensus 450 ~eale~ 455 (539)
T KOG0548|consen 450 QEALEL 455 (539)
T ss_pred HHHHhc
Confidence 999877
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=182.76 Aligned_cols=189 Identities=15% Similarity=0.135 Sum_probs=166.2
Q ss_pred hChhhHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 37 QEHSEIASALSLLDAALAL---SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al~l---~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
...++|.+|+..|++++.+ .|....++.++|.+++.+|++++|+.+|++++ ...|.+
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~----------------- 364 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRV----------------- 364 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCc-----------------
Confidence 3457899999999999987 48888999999999999999999999999966 222211
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
.+.|+.+|.+++.+|++++|+..|++++++.
T Consensus 365 ---------------------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---- 395 (615)
T TIGR00990 365 ---------------------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN---- 395 (615)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 1357889999999999999999999998762
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|++..+...+ |..++..|+|++|+..|++++.+
T Consensus 396 ----------------------------------p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~kal~l- 428 (615)
T TIGR00990 396 ----------------------------------SEDPDIYYHR------------AQLHFIKGEFAQAGKDYQKSIDL- 428 (615)
T ss_pred ----------------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc-
Confidence 5554444333 99999999999999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+..+++++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 429 ----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 429 ----DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred ----CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999999999999999999999999999999999999888
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-16 Score=176.17 Aligned_cols=91 Identities=18% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH----HHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE----SIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e----Al~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++ |+..|++++.++|+++.++..+|.+
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 293 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 77888999999999999999997 34578999999999999999986 8999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+...|++++|+..|++++++
T Consensus 294 l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999887
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-15 Score=169.77 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=51.5
Q ss_pred HHHHHHcCCHHH----HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSE----AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~e----Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..++..|++++ |+..|.+++.+ .|....++.++|.++..+|++++|+..+++++.++|+++.++..+|.+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 555555555553 55555555554 223455555555555555555555555555555555555555555555
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+..+|++++|+..|++++..
T Consensus 328 l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 55555555555555555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-16 Score=161.03 Aligned_cols=205 Identities=17% Similarity=0.216 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+.-||+.+..++ +.++-.+-...|++|..++|.++..|++||.+++-+++|++|+.+|++++ .++|
T Consensus 360 ~~lyI~~a~~y~---d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai---~L~p-------- 425 (606)
T KOG0547|consen 360 NSLYIKRAAAYA---DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI---SLDP-------- 425 (606)
T ss_pred chHHHHHHHHHh---hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh---hcCh--------
Confidence 333888887777 67778888889999999999999999999999999999999999999966 2222
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
+..++|..++-+.++++.+++++..|
T Consensus 426 ------------------------------------------------------e~~~~~iQl~~a~Yr~~k~~~~m~~F 451 (606)
T KOG0547|consen 426 ------------------------------------------------------ENAYAYIQLCCALYRQHKIAESMKTF 451 (606)
T ss_pred ------------------------------------------------------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22357888999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
+.+.+-- |....+..++ |.++..+++|+.|
T Consensus 452 ee~kkkF--------------------------------------P~~~Evy~~f------------AeiLtDqqqFd~A 481 (606)
T KOG0547|consen 452 EEAKKKF--------------------------------------PNCPEVYNLF------------AEILTDQQQFDKA 481 (606)
T ss_pred HHHHHhC--------------------------------------CCCchHHHHH------------HHHHhhHHhHHHH
Confidence 9887541 6778888888 8899999999999
Q ss_pred HHHHHHHHhccCCCCC--cccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 263 IRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
++.|+.||++. |..+ -.++..+.+.|...++ .+++..|+..|++||++||.+-.|+..+|++..++|+.++||..|
T Consensus 482 ~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 482 VKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHHHHhhc-cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999983 3211 1245566666655443 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 340 EHLKLLY 346 (580)
Q Consensus 340 ~~al~l~ 346 (580)
++++.|.
T Consensus 561 Eksa~lA 567 (606)
T KOG0547|consen 561 EKSAQLA 567 (606)
T ss_pred HHHHHHH
Confidence 9998884
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=158.96 Aligned_cols=251 Identities=15% Similarity=0.137 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....+-..|...+ .+|+|++||.+|+.||+++|+.+..|.+|+.||.++|.+++++++|-+++ +++|+..
T Consensus 114 ~A~~lK~~GN~~f---~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~Y~---- 183 (606)
T KOG0547|consen 114 YAAALKTKGNKFF---RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPDYV---- 183 (606)
T ss_pred HHHHHHhhhhhhh---hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcHHH----
Confidence 4444556666677 78999999999999999999999999999999999999999999999954 5544322
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
-+++..+.++-.+|++++|+..
T Consensus 184 ----------------------------------------------------------KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 184 ----------------------------------------------------------KALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHhhccHHHHHHh
Confidence 1455567777777777777655
Q ss_pred HH------------------HHHHH-----HHHhhh--hhhcccCCCCCCCCCCCCCCCCCCCC--CCCCCCCCChHHHH
Q 008039 182 LQ------------------TGKRL-----ATAAFR--RESISLSDDSFPFSKFPVSNNHQTPP--ATPPRTMTESESVS 234 (580)
Q Consensus 182 l~------------------~al~l-----~~~~~r--~~~~~~~~d~~~~~~l~~~~~~~~~~--~~~~~~dPd~~~~~ 234 (580)
+. +.+.. ....++ |.. ....-.|..+.++.....+... ......|-+.....
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p-~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP-VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC-CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 32 11111 011111 100 0000111111111110000000 00111111111111
Q ss_pred -HHHHH-----------H---------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 235 -QLLSH-----------I---------------------KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 235 -~ll~~-----------~---------------------k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
.+++. + .-+..+.-.|.-+|-.|++-.|-..|+++|.+ ++..
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-----~~~~ 359 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL-----DPAF 359 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-----Cccc
Confidence 11111 0 00222334577778899999999999999998 3335
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|..||.+|...++..+-..+|++|..+||+++..|+.||+++.-+++|++|+.||++++.|.
T Consensus 360 ~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 360 NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 56699999999999999999999999999999999999999999999999999999999999983
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-15 Score=166.50 Aligned_cols=195 Identities=11% Similarity=0.061 Sum_probs=161.7
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC---------hHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 30 ARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR---------FKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 30 ~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r---------~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
++..+.....+++..|+.+|++|++++|.++.+|..+|.+++.+++ +++|+..+++++ +++|++.
T Consensus 265 g~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al---~ldP~~~--- 338 (553)
T PRK12370 265 GKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT---ELDHNNP--- 338 (553)
T ss_pred hHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH---hcCCCCH---
Confidence 4444444456789999999999999999999999999999886544 789999999855 3333222
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
+.|..+|.++...|++++|+.
T Consensus 339 -----------------------------------------------------------~a~~~lg~~~~~~g~~~~A~~ 359 (553)
T PRK12370 339 -----------------------------------------------------------QALGLLGLINTIHSEYIVGSL 359 (553)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHccCHHHHHH
Confidence 367788999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~ 260 (580)
.|+++++++ |++..+...+ |..++..|+++
T Consensus 360 ~~~~Al~l~--------------------------------------P~~~~a~~~l------------g~~l~~~G~~~ 389 (553)
T PRK12370 360 LFKQANLLS--------------------------------------PISADIKYYY------------GWNLFMAGQLE 389 (553)
T ss_pred HHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHCCCHH
Confidence 999999873 5656555444 99999999999
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 261 EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE-PSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-P~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+|+..|.+++++ +| .....++.++.+++.+|++++|+..+.+++..+ |+++.++..+|.+|..+|++++|+..+
T Consensus 390 eAi~~~~~Al~l-~P----~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 390 EALQTINECLKL-DP----TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred HHHHHHHHHHhc-CC----CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998 23 355566677777888999999999999999875 889999999999999999999999999
Q ss_pred HHHHH
Q 008039 340 EHLKL 344 (580)
Q Consensus 340 ~~al~ 344 (580)
+++..
T Consensus 465 ~~~~~ 469 (553)
T PRK12370 465 KEIST 469 (553)
T ss_pred HHhhh
Confidence 88743
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-14 Score=140.68 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=190.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++..|.++++.+..++ ..|.+..||..|..|++.+|++-.+++-||.+|+.+|+-..|+.++.++| ++.|+..
T Consensus 33 ~~~advekhlElGk~ll---a~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl---elKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELL---ARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL---ELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH---hcCccHH
Confidence 57789999999999999 58889999999999999999999999999999999999999999999965 3333222
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
+ +-...|.++.++|.++.
T Consensus 107 ~--------------------------------------------------------------ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 107 A--------------------------------------------------------------ARIQRGVVLLKQGELEQ 124 (504)
T ss_pred H--------------------------------------------------------------HHHHhchhhhhcccHHH
Confidence 1 23557999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|...|+..++-.+. .-....+..-+..+.+...+......++..|
T Consensus 125 A~~DF~~vl~~~~s-----------------------------------~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 125 AEADFDQVLQHEPS-----------------------------------NGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred HHHHHHHHHhcCCC-----------------------------------cchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 99999998754210 0123344445555666677778888999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++..||...+..|++ .|..+.++..|+.||...|+...||.|...+-++..++.+++|..+.+++..|+.+.++.
T Consensus 170 D~~~ai~~i~~llEi-----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI-----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred chhhHHHHHHHHHhc-----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999998 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
..+.++++
T Consensus 245 ~iRECLKl 252 (504)
T KOG0624|consen 245 EIRECLKL 252 (504)
T ss_pred HHHHHHcc
Confidence 99999888
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-14 Score=140.55 Aligned_cols=203 Identities=16% Similarity=0.127 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-++..+..++ ..|++++|+..+++++..+|.+..++..+|.+++.+|++++|++.+++++. ..|.+
T Consensus 30 ~~~~~~~la~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~~~~----- 98 (234)
T TIGR02521 30 AAKIRVQLALGYL---EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT---LNPNN----- 98 (234)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC-----
Confidence 4566777788877 689999999999999999999999999999999999999999999999652 21111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+++..|++++|+..
T Consensus 99 ---------------------------------------------------------~~~~~~~~~~~~~~g~~~~A~~~ 121 (234)
T TIGR02521 99 ---------------------------------------------------------GDVLNNYGTFLCQQGKYEQAMQQ 121 (234)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcccHHHHHHH
Confidence 12467789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.... .+... ..+... |..++..|++++
T Consensus 122 ~~~~~~~~~------------------------------------~~~~~--~~~~~l----------~~~~~~~g~~~~ 153 (234)
T TIGR02521 122 FEQAIEDPL------------------------------------YPQPA--RSLENA----------GLCALKAGDFDK 153 (234)
T ss_pred HHHHHhccc------------------------------------cccch--HHHHHH----------HHHHHHcCCHHH
Confidence 999875410 01111 112222 889999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.. .|....++..+|.++...|++++|+..+++++.+.|.++..+..++.++...|++++|...++.
T Consensus 154 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 154 AEKYLTRALQI-----DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHh-----CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999997 2336778999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 229 ~~~~ 232 (234)
T TIGR02521 229 LQKL 232 (234)
T ss_pred HHhh
Confidence 7543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=153.71 Aligned_cols=204 Identities=16% Similarity=0.105 Sum_probs=161.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
+..+..++ ..|+++.|+..|.++++.+|.+..++..+|.+++..|++++|+..++.++.. |...
T Consensus 39 y~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~--------- 102 (389)
T PRK11788 39 YFKGLNFL---LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR----PDLT--------- 102 (389)
T ss_pred HHHHHHHH---hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC----CCCC---------
Confidence 34454444 5789999999999999999999999999999999999999999999885521 0000
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
.......+..+|.+|+..|++++|+..|++++
T Consensus 103 ------------------------------------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 103 ------------------------------------------------REQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00011246788999999999999999999877
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
+.. |....+...+ +..+.+.|+|++|+..|
T Consensus 135 ~~~--------------------------------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 135 DEG--------------------------------------DFAEGALQQL------------LEIYQQEKDWQKAIDVA 164 (389)
T ss_pred cCC--------------------------------------cchHHHHHHH------------HHHHHHhchHHHHHHHH
Confidence 531 3223332222 88889999999999999
Q ss_pred HHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 267 ~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++... |.+ ......+++++|.++...|++++|+..|.++++++|++..+++.+|.++...|++++|+..|+++++.
T Consensus 165 ~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 165 ERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9998863 321 11234567789999999999999999999999999999999999999999999999999999999766
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.9e-16 Score=154.05 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
..+++.+|.+||.+++.++|.+||..|++||.+ .|.+++.|+||+.+|.++|.|+.|+.||..||.+||.+.++|
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 345778899999999999999999999999998 456899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|.+|..+|+|++|+..|+++++|
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 99999999999999999999999988
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-15 Score=158.40 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=115.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCChHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS-------NNHQTPPATPPRTMTESESVS 234 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~-------~~~~~~~~~~~~~dPd~~~~~ 234 (580)
|..+|.||..+++++.||++|++++++++. ..+....+|.. +.+...+...++.||.+=++
T Consensus 424 Wca~GNcfSLQkdh~~Aik~f~RAiQldp~-----------faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA- 491 (638)
T KOG1126|consen 424 WCALGNCFSLQKDHDTAIKCFKRAIQLDPR-----------FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA- 491 (638)
T ss_pred HHHhcchhhhhhHHHHHHHHHHHhhccCCc-----------cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH-
Confidence 455566666666666666666666655421 11111111111 01122233344455644444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
++.. |.++.++++|+.|.-+|++|+++ .|.+..+.+..|..+.++|+.++|+..+++|+.+||.
T Consensus 492 -wYGl----------G~vy~Kqek~e~Ae~~fqkA~~I-----NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 492 -WYGL----------GTVYLKQEKLEFAEFHFQKAVEI-----NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred -HHhh----------hhheeccchhhHHHHHHHhhhcC-----CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 4444 99999999999999999999998 4568899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++-..|.+|.++..+++|++|+..|+.+.++
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999888
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-14 Score=164.84 Aligned_cols=233 Identities=17% Similarity=0.135 Sum_probs=179.9
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.++..|..++ ..|++..|+..|.+++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|++....
T Consensus 21 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~- 93 (899)
T TIGR02917 21 SPESLIEAAKSYL---QKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKAL---SLGYPKNQVL- 93 (899)
T ss_pred CHHHHHHHHHHHH---HcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCChhhhH-
Confidence 6677889999988 68999999999999999999999999999999999999999999999965 3333222110
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc---cccccchhHHHHHHHHHHhcCCHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR---NCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~---~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...+..+....+ . .+++..+.. .........++.+|.+++..|++++|
T Consensus 94 ---------~~~a~~~~~~g~-------~-------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 144 (899)
T TIGR02917 94 ---------PLLARAYLLQGK-------F-------------QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELA 144 (899)
T ss_pred ---------HHHHHHHHHCCC-------H-------------HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHH
Confidence 000111110000 0 011111111 11122334577899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|++++... |++.... +.. |..++..|+
T Consensus 145 ~~~~~~a~~~~--------------------------------------~~~~~~~--~~l----------a~~~~~~~~ 174 (899)
T TIGR02917 145 QKSYEQALAID--------------------------------------PRSLYAK--LGL----------AQLALAENR 174 (899)
T ss_pred HHHHHHHHhcC--------------------------------------CCChhhH--HHH----------HHHHHHCCC
Confidence 99999987652 4333332 223 889999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|++|+..+.+++.. .|....+++.+|.++...|++++|+..|.+++.++|+++.+++.++.++...|++++|...
T Consensus 175 ~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 175 FDEARALIDEVLTA-----DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred HHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999996 3446789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|+++++.
T Consensus 250 ~~~~~~~ 256 (899)
T TIGR02917 250 ADALLKK 256 (899)
T ss_pred HHHHHHh
Confidence 9999776
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-13 Score=166.55 Aligned_cols=252 Identities=12% Similarity=0.061 Sum_probs=174.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH-------
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS------- 110 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------- 110 (580)
..|++++|+..|+++|.++|.++.++..+|.+++.+|++++|+..|++++ +..|++..... -.+-+.
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~~~~~~~---~~~ll~~~~~~~~ 354 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPHSSNRDK---WESLLKVNRYWLL 354 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCccchhH---HHHHHHhhhHHHH
Confidence 57999999999999999999999999999999999999999999999965 44554331100 000000
Q ss_pred -HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 111 -RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 111 -~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
.....++..+ ...+....+...+..++ ...++++.||.++...|++++|+..|++++++.
T Consensus 355 ~~~g~~~~~~g-----------------~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 355 IQQGDAALKAN-----------------NLAQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHCC-----------------CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0000011111 01111112222222333 334678889999999999999999999999875
Q ss_pred HHhhhh-hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--------------HHHHHHHHHHHHHH
Q 008039 190 TAAFRR-ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--------------KLLLRRRTAAIAAL 254 (580)
Q Consensus 190 ~~~~r~-~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--------------k~~~~~k~~G~~~~ 254 (580)
|..... ..+. ..+ . . ...+.+..++..+ .....+...|..+.
T Consensus 416 p~~~~a~~~L~---~l~--~-~-----------------~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~ 472 (1157)
T PRK11447 416 PGNTNAVRGLA---NLY--R-Q-----------------QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALE 472 (1157)
T ss_pred CCCHHHHHHHH---HHH--H-h-----------------cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 321100 0000 000 0 0 0001111111110 11223455789999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|++++|+..|.+++.+ .|.+..+++++|.+|..+|++++|+..+++++.++|+++.+++.+|..+...+++++
T Consensus 473 ~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999997 445788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 335 CLHDLEHL 342 (580)
Q Consensus 335 Ai~~~~~a 342 (580)
|+..|+++
T Consensus 548 Al~~l~~l 555 (1157)
T PRK11447 548 ALAHLNTL 555 (1157)
T ss_pred HHHHHHhC
Confidence 99988865
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=141.19 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
+.+.++.+++.+||.+|+.|+|.+|...|+.||.++++......+.+|.|||.|+++++.|+.||.+|.+||+|+|.|.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 34567888999999999999999999999999999877666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+.+||.+|..+..|++|+.||.+++++
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-14 Score=147.51 Aligned_cols=197 Identities=14% Similarity=-0.001 Sum_probs=151.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|+..|..+. ..|++..|+..|+++++++|+++.+|..+|.++..+|+|++|++.|++++ +++|++.
T Consensus 63 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---~l~P~~~---- 132 (296)
T PRK11189 63 RAQLHYERGVLYD---SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYN---- 132 (296)
T ss_pred hHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH----
Confidence 3444666776665 57999999999999999999999999999999999999999999999965 3333222
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
..|+.+|.+++..|++++|+..
T Consensus 133 ----------------------------------------------------------~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 133 ----------------------------------------------------------YAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHCCCHHHHHHH
Confidence 3678899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++. |++.. ..++ .......+++++
T Consensus 155 ~~~al~~~--------------------------------------P~~~~-~~~~------------~~l~~~~~~~~~ 183 (296)
T PRK11189 155 LLAFYQDD--------------------------------------PNDPY-RALW------------LYLAESKLDPKQ 183 (296)
T ss_pred HHHHHHhC--------------------------------------CCCHH-HHHH------------HHHHHccCCHHH
Confidence 99999773 33331 1111 112345689999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHH--H----HHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAES--I----ADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eA--l----~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
|+..|.+++...++. .+ ..+.+++.+|++.++ + ..++.+++++|....+|+.+|.++..+|++++|
T Consensus 184 A~~~l~~~~~~~~~~-------~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 184 AKENLKQRYEKLDKE-------QW-GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHhhCCcc-------cc-HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999998877642111 12 246777777876443 3 223344577888999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..|++++++
T Consensus 256 ~~~~~~Al~~ 265 (296)
T PRK11189 256 AALFKLALAN 265 (296)
T ss_pred HHHHHHHHHh
Confidence 9999999887
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-13 Score=157.21 Aligned_cols=267 Identities=14% Similarity=0.073 Sum_probs=161.5
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.+|..+.-+...+..+. ..|++.+|+..|.+++..+|.+...+..++.++...|++++|+..+++++. ..|.+.
T Consensus 528 ~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 601 (899)
T TIGR02917 528 IDPKNLRAILALAGLYL---RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSP 601 (899)
T ss_pred hCcCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH---cCCCCH
Confidence 34445555555555554 466777777777777777777777777777777777777777777777542 222211
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.. .......+.... ...+...-+...+..++ .....++.+|.++...|++++
T Consensus 602 ~~----------~~~l~~~~~~~~----------------~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 602 EA----------WLMLGRAQLAAG----------------DLNKAVSSFKKLLALQP--DSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HH----------HHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHH
Confidence 00 000001110000 00000000001111111 223456667788888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-----HHHHHHHHHH
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL-----LLRRRTAAIA 252 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~-----~~~~k~~G~~ 252 (580)
|+..|++++.+.+.... ........ +... -+...+..++..+.. .......|..
T Consensus 654 A~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~-----------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 654 AITSLKRALELKPDNTE--AQIGLAQL--LLAA-----------------KRTESAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHH--HHHc-----------------CCHHHHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 88888777765321000 00000000 0000 001111111111110 1112334899
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
++..|+|++|+..|.+++... |. . ..+++++.++..+|++++|+..+.+++..+|+++.+++.+|.++..+|++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~-~~----~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA-PS----S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC-CC----c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999962 32 2 67889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|+++++.
T Consensus 787 ~~A~~~~~~~~~~ 799 (899)
T TIGR02917 787 DKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999877
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=162.83 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|...|..+. .++..+|+..|.+++...|.+. .+...|.++...|++++|+..|++++. ..|.+. .
T Consensus 476 ~~~a~~~LG~~l~----~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~-a-- 544 (987)
T PRK09782 476 DAAAWNRLAKCYR----DTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL---HDMSNE-D-- 544 (987)
T ss_pred CHHHHHHHHHHHH----hCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcH-H--
Confidence 6667777887776 3788889999999999999865 466678888899999999999998542 111111 0
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
......-++..++ ......-+...+..+++. .-.+..++..+..+|++++|+..
T Consensus 545 -------~~~la~all~~Gd-----------------~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 545 -------LLAAANTAQAAGN-----------------GAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred -------HHHHHHHHHHCCC-----------------HHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHH
Confidence 0000001111110 000001111111112111 11233455566667888999888
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++ +|+ ... +... |.++.+.|++++
T Consensus 599 ~~~AL~l--------------------------------------~P~-~~a--~~~L----------A~~l~~lG~~de 627 (987)
T PRK09782 599 LTRSLNI--------------------------------------APS-ANA--YVAR----------ATIYRQRHNVPA 627 (987)
T ss_pred HHHHHHh--------------------------------------CCC-HHH--HHHH----------HHHHHHCCCHHH
Confidence 8888866 253 222 2333 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|.++++++|+++.+++++|.++..+|++++|+..|++
T Consensus 628 A~~~l~~AL~l-----~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 628 AVSDLRAALEL-----EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999997 4558899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
++++
T Consensus 703 Al~l 706 (987)
T PRK09782 703 VIDD 706 (987)
T ss_pred HHhc
Confidence 9888
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=154.63 Aligned_cols=186 Identities=10% Similarity=-0.062 Sum_probs=157.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.+++.+|+..+++|++++|+++.+|..+|.++..+|++++|+..|++++ +++|+++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al---~l~P~~~--------------------- 372 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQAN---LLSPISA--------------------- 372 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH---------------------
Confidence 3568999999999999999999999999999999999999999999965 3444322
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
..|+.+|.++..+|++++|+..|+++++++
T Consensus 373 -----------------------------------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--------- 402 (553)
T PRK12370 373 -----------------------------------------DIKYYYGWNLFMAGQLEEALQTINECLKLD--------- 402 (553)
T ss_pred -----------------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 257788999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|++..+...+ +..++..|+|++|+..|.+++... .
T Consensus 403 -----------------------------P~~~~~~~~~------------~~~~~~~g~~eeA~~~~~~~l~~~----~ 437 (553)
T PRK12370 403 -----------------------------PTRAAAGITK------------LWITYYHTGIDDAIRLGDELRSQH----L 437 (553)
T ss_pred -----------------------------CCChhhHHHH------------HHHHHhccCHHHHHHHHHHHHHhc----c
Confidence 4433332222 556778999999999999999853 2
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|..+.++.++|.++..+|++++|+..+.+.+...|....++..++.+|..+| +.|...++++++.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999 4888888887665
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.1e-14 Score=164.63 Aligned_cols=230 Identities=10% Similarity=-0.064 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
.+..+..+. ..|++++|+..|.+++...|.+ ..+...|.+++..|++++|+..|++++ ...|++....
T Consensus 512 ~L~lA~al~---~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL---~l~P~~~~l~----- 579 (987)
T PRK09782 512 HRAVAYQAY---QVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAE---QRGLGDNALY----- 579 (987)
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCccHHHH-----
Confidence 333444443 6789999999999988887775 456778999999999999999999866 3333322000
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
..+ ...+...+ ...+...-+...+..+++ .-.|+.+|.++..+|++++|+..|+++
T Consensus 580 -~~L---a~~l~~~G-----------------r~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 580 -WWL---HAQRYIPG-----------------QPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred -HHH---HHHHHhCC-----------------CHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000 00000001 001111112223333443 346789999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008039 186 KRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRH 265 (580)
Q Consensus 186 l~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~ 265 (580)
+.+ +|++..+...+ |..+...|++++|+.+
T Consensus 636 L~l--------------------------------------~Pd~~~a~~nL------------G~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 636 LEL--------------------------------------EPNNSNYQAAL------------GYALWDSGDIAQSREM 665 (987)
T ss_pred HHh--------------------------------------CCCCHHHHHHH------------HHHHHHCCCHHHHHHH
Confidence 977 36666555544 9999999999999999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 266 FSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 266 y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++++ .|.++.+++++|.++..+|++++|+..|+++++++|++.......|.+.....+|+.|..+|.+...+
T Consensus 666 l~~AL~l-----~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 666 LERAHKG-----LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999997 45588999999999999999999999999999999999999999999999999999999999999776
Q ss_pred H
Q 008039 346 Y 346 (580)
Q Consensus 346 ~ 346 (580)
.
T Consensus 741 ~ 741 (987)
T PRK09782 741 S 741 (987)
T ss_pred C
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-13 Score=140.68 Aligned_cols=254 Identities=15% Similarity=0.160 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
.++-.++..++ ..|||+.|+.+|..||.++|.+...+.+|-.+|..+|+|++|+.+-.+.+ +++|+ |
T Consensus 3 ~e~k~kgnaa~---s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~-w------ 69 (539)
T KOG0548|consen 3 VELKEKGNAAF---SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPD-W------ 69 (539)
T ss_pred hHHHHHHHhhc---ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCc-h------
Confidence 44556666666 78999999999999999999999999999999999999999999777633 34331 1
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
. -.|..+|.+++.+|+|++|+..|.
T Consensus 70 -----------------------------~--------------------------kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 70 -----------------------------A--------------------------KGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred -----------------------------h--------------------------hHHHHhHHHHHhcccHHHHHHHHH
Confidence 0 137778889999999999998888
Q ss_pred HHHHHHHHh----------hhhh--h-------------------------------------------cccCCCCCC--
Q 008039 184 TGKRLATAA----------FRRE--S-------------------------------------------ISLSDDSFP-- 206 (580)
Q Consensus 184 ~al~l~~~~----------~r~~--~-------------------------------------------~~~~~d~~~-- 206 (580)
++|+..+.. .+.. . .+..++.+.
T Consensus 95 ~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 95 EGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred HHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 887653210 0000 0 000000000
Q ss_pred --------CCCCCCCCCCCCCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 207 --------FSKFPVSNNHQTPPATPP-----RTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 207 --------~~~l~~~~~~~~~~~~~~-----~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
...+...+..+...+..| ..-|..+.-..-.+........+..||.+++..+|..|+.+|..++++.
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 000000111111111111 1112222333333355567778889999999999999999999888751
Q ss_pred C-------------------------------------------------------------------------------
Q 008039 274 R------------------------------------------------------------------------------- 274 (580)
Q Consensus 274 ~------------------------------------------------------------------------------- 274 (580)
.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l 334 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL 334 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH
Confidence 0
Q ss_pred ----------------CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 275 ----------------GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 275 ----------------~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
....|..+.-..+.|..+++.|+|..|+..|++||..+|++..+|.+||-||..+|.+..|+.|
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 0001112344455677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
.+.++++
T Consensus 415 a~~~ieL 421 (539)
T KOG0548|consen 415 AKKCIEL 421 (539)
T ss_pred HHHHHhc
Confidence 9999988
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.9e-14 Score=153.09 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=174.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
+=++.+|+..|.+.-+..++..-.+.+.|++|+.++.|++|..+|+.+- +..|
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r---~~~p------------------------ 384 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVR---RIEP------------------------ 384 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcc------------------------
Confidence 4578999999999778888888889999999999999999999999843 1111
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
-+ ++.+ ..| ..+++++.+. -++..|-+-+ +...-.+++++
T Consensus 385 -~r------------v~~m----------------------eiy---ST~LWHLq~~-v~Ls~Laq~L-i~~~~~sPesW 424 (638)
T KOG1126|consen 385 -YR------------VKGM----------------------EIY---STTLWHLQDE-VALSYLAQDL-IDTDPNSPESW 424 (638)
T ss_pred -cc------------ccch----------------------hHH---HHHHHHHHhh-HHHHHHHHHH-HhhCCCCcHHH
Confidence 00 0000 001 2233333221 1122222111 11111223444
Q ss_pred ccCCCCCCCCCCCCCCC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 199 SLSDDSFPFSKFPVSNN-HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~-~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
|..++.|++.. +.+ +.+...-.+-+||...=+..++ |-.+.....|+.|..+|..||..
T Consensus 425 ca~GNcfSLQk---dh~~Aik~f~RAiQldp~faYayTLl------------GhE~~~~ee~d~a~~~fr~Al~~----- 484 (638)
T KOG1126|consen 425 CALGNCFSLQK---DHDTAIKCFKRAIQLDPRFAYAYTLL------------GHESIATEEFDKAMKSFRKALGV----- 484 (638)
T ss_pred HHhcchhhhhh---HHHHHHHHHHHhhccCCccchhhhhc------------CChhhhhHHHHhHHHHHHhhhcC-----
Confidence 44444443320 000 0000011122344444444444 77777788888888888888886
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~ 357 (580)
.|.+..+||.+|.+|+++++++.|.-.|.+|+.++|.+.......|.++.++|+.|+|+..|++|+.+.+ +.|-
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~------kn~l 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP------KNPL 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC------CCch
Confidence 4557899999999999999999999999999999999999999999999999999999999999988732 2222
Q ss_pred ccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhc-ccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 358 PAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIG-LRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 358 ~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLg-v~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
+-..+..+... .....++...++++|+-+ .....-|..|| +.+.........-+.-.|+.++|--
T Consensus 559 ~~~~~~~il~~--~~~~~eal~~LEeLk~~v----P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFS--LGRYVEALQELEELKELV----PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHh--hcchHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 22222111110 112234444455555411 12223333444 3333333334444666778888864
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5e-13 Score=142.55 Aligned_cols=130 Identities=22% Similarity=0.175 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.++...|++++|+..|++++++. |+...+...+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l--- 220 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD--------------------------------------PQCVRASILL--- 220 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC--------------------------------------cCCHHHHHHH---
Confidence 35678999999999999999999988662 3333333232
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..+.+.|++++|+..|.+++... |. ....++..++.+|..+|++++|+..+.+++.++|+...+ .
T Consensus 221 ---------a~~~~~~g~~~~A~~~~~~~~~~~-p~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~ 286 (389)
T PRK11788 221 ---------GDLALAQGDYAAAIEALERVEEQD-PE---YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-L 286 (389)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHC-hh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-H
Confidence 889999999999999999999862 21 235678889999999999999999999999999987554 8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|.++...|++++|+..|+++++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999776
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.6e-13 Score=161.51 Aligned_cols=285 Identities=14% Similarity=0.099 Sum_probs=170.2
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC--
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD-- 103 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~-- 103 (580)
++..+..++ ..|++++|+..|.+++.++|.++.++..+|.+++.+|++++|++.|++++ +..|++.......
T Consensus 354 ~~~~g~~~~---~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL---~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAAL---KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL---RMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHH
Confidence 455566666 68999999999999999999999999999999999999999999999966 3344332211000
Q ss_pred -------c-----------hh-hHhH-----------HHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc
Q 008039 104 -------S-----------SS-QQLS-----------RERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR 152 (580)
Q Consensus 104 -------~-----------~~-~~~~-----------~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~ 152 (580)
. +. .... ...+.++ ..++ ..+..+.+-..+..
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~-----------------~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK-----------------WAQAAELQRQRLAL 490 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHHh
Confidence 0 00 0000 0111111 1110 11111122223333
Q ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008039 153 NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES 232 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~ 232 (580)
+++ ..|.++.+|.+|..+|++++|+..|++++++.|.... ..+.. .+.+...+....+.......+.. .....
T Consensus 491 ~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~~~a~--al~l~~~~~~~~Al~~l~~l~~~-~~~~~ 563 (1157)
T PRK11447 491 DPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--QVYAY--GLYLSGSDRDRAALAHLNTLPRA-QWNSN 563 (1157)
T ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--HHHHH--HHHHHhCCCHHHHHHHHHhCCch-hcChh
Confidence 443 4588899999999999999999999999877532110 00000 00000000000000000000000 00000
Q ss_pred HHHHHHHHH-----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHH
Q 008039 233 VSQLLSHIK-----------------------------LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAE 283 (580)
Q Consensus 233 ~~~ll~~~k-----------------------------~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~ 283 (580)
+..+...+. ........|..+.+.|++++|+..|.+++.. .|.+..
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~ 638 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNAD 638 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH
Confidence 100000000 0001223477777888888888888888886 344677
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++++.++..+|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|++++..
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888888888888888888888888888888888888888888888888888665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=146.24 Aligned_cols=231 Identities=11% Similarity=0.149 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
++.|-.++ ..|++.+|.=+|+.|+.-+|.+..+|..+|.+....+.-.-||..+++++ ++.|++
T Consensus 289 f~eG~~lm---~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl---~LdP~N---------- 352 (579)
T KOG1125|consen 289 FKEGCNLM---KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL---ELDPTN---------- 352 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH---hcCCcc----------
Confidence 46777777 78999999999999999999999999999999999999999999999855 333321
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
+.++..||..|...|.--+|+.+|.+=+
T Consensus 353 ----------------------------------------------------leaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 353 ----------------------------------------------------LEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred ----------------------------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 2356678999999999999999999876
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH----------HHHHHHHHHHc
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR----------RRTAAIAALDA 256 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~----------~k~~G~~~~~~ 256 (580)
+..+. ...+..... +.. .......++...........-++.+ ..-.|..++-.
T Consensus 381 ~~~p~---------------y~~l~~a~~-~~~-~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 381 RNKPK---------------YVHLVSAGE-NED-FENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HhCcc---------------chhccccCc-ccc-ccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 55321 000000000 000 0000011122211111111111111 12348899999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|+|+.||.+|+.||.. .|.+..+|+.+|..+..-.+..+||..|++||+|.|+|+.++|++|..++.+|.|.||+
T Consensus 444 ~efdraiDcf~~AL~v-----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQV-----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHhc-----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 9999999999999997 45589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 337 HDLEHLKLLYN 347 (580)
Q Consensus 337 ~~~~~al~l~~ 347 (580)
..|-.|+.+..
T Consensus 519 ~hlL~AL~mq~ 529 (579)
T KOG1125|consen 519 KHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhhh
Confidence 99999999853
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.7e-13 Score=128.29 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=143.0
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
..+..+..+|.+++..|+|++|++.+++++. ..|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~~----------------------------------------- 64 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALE---HDPDD----------------------------------------- 64 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccc-----------------------------------------
Confidence 3467889999999999999999999999652 22111
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
...+..+|.+++.+|++++|+..|++++++.
T Consensus 65 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------------- 95 (234)
T TIGR02521 65 ---------------------YLAYLALALYYQQLGELEKAEDSFRRALTLN---------------------------- 95 (234)
T ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------
Confidence 1356778999999999999999999998762
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|........+ |..++..|+|++|+..|.+++.. +. .+.....++++|.++...|+
T Consensus 96 ----------~~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 96 ----------PNNGDVLNNY------------GTFLCQQGKYEQAMQQFEQAIED--PL-YPQPARSLENAGLCALKAGD 150 (234)
T ss_pred ----------CCCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhc--cc-cccchHHHHHHHHHHHHcCC
Confidence 3333333222 88999999999999999999985 21 34467789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+..|.+++..+|++..+++.+|.++...|++++|+..|++++.+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999776
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-12 Score=133.85 Aligned_cols=212 Identities=15% Similarity=0.086 Sum_probs=168.0
Q ss_pred hHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC---CCCCCCCCCc---h-hhHhHHH
Q 008039 41 EIASALSLLDAALAL-SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN---DDSGSVSSDS---S-SQQLSRE 112 (580)
Q Consensus 41 d~~~Al~~~~~Al~l-~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~---~~~~~~~~~~---~-~~~~~~~ 112 (580)
..++++.-+...+.+ -|.+.-+....|.+....++|+.|+..|+++.+. +| +|-...+... . -|+++..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn---DPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN---DPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc---CCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 577888899999998 8999999999999999999999999999996633 33 1111111000 0 0112211
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAA 192 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~ 192 (580)
...+.. -++-.-..+..+|.-|.-.++.|.|+.+|+++++|+
T Consensus 319 A~~v~~-----------------------------------idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--- 360 (559)
T KOG1155|consen 319 AQNVSN-----------------------------------IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--- 360 (559)
T ss_pred HHHHHH-----------------------------------hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---
Confidence 111111 111111234457888999999999999999999884
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 193 FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 193 ~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
|....+..+. |-.++..++-..||+.|..||++
T Consensus 361 -----------------------------------p~~~~aWTLm------------GHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 361 -----------------------------------PKYLSAWTLM------------GHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred -----------------------------------cchhHHHHHh------------hHHHHHhcccHHHHHHHHHHHhc
Confidence 5666677666 89999999999999999999998
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 273 RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 273 ~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....+|+.+|++|.-++.+.=|+-+|.+|+.+.|++...|..+|+||.++++.++|+.+|.+++.+
T Consensus 394 -----~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 394 -----NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred -----CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 45578999999999999999999999999999999999999999999999999999999999999876
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=143.30 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC----------CCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA----------PQGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~----------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
.++....+.++.||.+|+.|+|..|+..|.+|+...+-. .......++.|++.||+++++|.+|+..|++
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 477888999999999999999999999999998863210 0123467899999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
+|+++|+|++|+|++|+++..+|+|+.|+.+|++++++. |. +.++..+|..+.+++++...
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~---------P~---------Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE---------PS---------NKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC---------CC---------cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999993 33 25666667777777655543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=133.94 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=153.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..+.+..|+.+++++|.++|.+..+|..|+.+|..++ .++++++.+++++ ..+|.+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i---~~npkn-------------------- 105 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA---EDNPKN-------------------- 105 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH---HHCCcc--------------------
Confidence 4568899999999999999999999999999999999 6899999999966 222211
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM--EDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~--eeAi~~l~~al~l~~~~~r 194 (580)
...|+.+|.++..+|+. ++++.+++++++++
T Consensus 106 ------------------------------------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d----- 138 (320)
T PLN02789 106 ------------------------------------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD----- 138 (320)
T ss_pred ------------------------------------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----
Confidence 23577788888888874 78899999988762
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~ 274 (580)
|.+-.+. ..+ |.++...|+|++|++.|+++|+.
T Consensus 139 ---------------------------------pkNy~AW--~~R----------~w~l~~l~~~~eeL~~~~~~I~~-- 171 (320)
T PLN02789 139 ---------------------------------AKNYHAW--SHR----------QWVLRTLGGWEDELEYCHQLLEE-- 171 (320)
T ss_pred ---------------------------------cccHHHH--HHH----------HHHHHHhhhHHHHHHHHHHHHHH--
Confidence 4334333 333 88999999999999999999997
Q ss_pred CCCCcccHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSS---GRI----AESIADCNKTLALEPSCIQALDTRALLLET----IRCLPDCLHDLEHLK 343 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~l---g~~----~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~al 343 (580)
++.+..+|++|+.++.++ |.+ ++.+.++.++|.++|++..+|+.++.++.. ++...+|+..+..++
T Consensus 172 ---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 172 ---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred ---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 355889999999999887 333 478889999999999999999999999988 566778888888875
Q ss_pred H
Q 008039 344 L 344 (580)
Q Consensus 344 ~ 344 (580)
.
T Consensus 249 ~ 249 (320)
T PLN02789 249 S 249 (320)
T ss_pred c
Confidence 4
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-14 Score=142.61 Aligned_cols=261 Identities=19% Similarity=0.179 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hc-CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAAL-AL-SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al-~l-~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...+..|+.++ ..|++++|++.+.+.+ .. .|.++.+|..+|.+...++++++|+..|++.+..-...+.+.....
T Consensus 9 ~~~l~~A~~~~---~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 9 EEALRLARLLY---QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34556677777 7899999999997655 45 5899999999999999999999999999997632111111110000
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCC--CCCccc-ccchHHHH--HHHHhhhccc-cccchhHHHHHHHHHHhcCCH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGR--DPSFKC-FSVSDLKK--KVMAGLCRNC-EKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~~~~~~-~~~~~~~k--~~~~~l~~~~-~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.. ....--.+...++...-..+ +++. ...+.+ +...+.++ .++..+.... .......|+.+|.++...|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 00 00000011111111110000 0000 000000 00111111 2222222222 123445577889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++++. |++..+...+ +..+..
T Consensus 163 ~~A~~~~~~al~~~--------------------------------------P~~~~~~~~l------------~~~li~ 192 (280)
T PF13429_consen 163 DKALRDYRKALELD--------------------------------------PDDPDARNAL------------AWLLID 192 (280)
T ss_dssp HHHHHHHHHHHHH---------------------------------------TT-HHHHHHH------------HHHHCT
T ss_pred HHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999883 6767666555 778899
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.|+++++...+....... |.++.++..+|.++..+|++++|+..+++++..+|+++..+...|.++...|++++|
T Consensus 193 ~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-----PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred CCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999888777777642 234567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..++++.+.
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 9999998654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-12 Score=124.58 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...++.++..|..++ ..|++..|+..|++++..+|.++ .++..+|.+++.+|++++|+..|++++ +..|++
T Consensus 30 ~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l---~~~p~~ 103 (235)
T TIGR03302 30 EWPAEELYEEAKEAL---DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFI---RLHPNH 103 (235)
T ss_pred cCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HHCcCC
Confidence 457778899999888 68999999999999999999886 578999999999999999999999965 333332
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---- 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---- 172 (580)
+.. .+.++.+|.+++..
T Consensus 104 ~~~-----------------------------------------------------------~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 104 PDA-----------------------------------------------------------DYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred Cch-----------------------------------------------------------HHHHHHHHHHHHHhcccc
Confidence 211 13577789998876
Q ss_pred ----CCHHHHHHHHHHHHHH
Q 008039 173 ----GLMEDAMVLLQTGKRL 188 (580)
Q Consensus 173 ----G~~eeAi~~l~~al~l 188 (580)
|++++|+..|++++..
T Consensus 125 ~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 125 DRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 8899999999998866
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-12 Score=132.28 Aligned_cols=183 Identities=15% Similarity=0.129 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
++.++|+..|.+||.+||....+|.+.|.=++.++.-..|++.|++++ +++|.|.
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~Dy---------------------- 398 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDY---------------------- 398 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhH----------------------
Confidence 788999999999999999999999999999999999999999999966 4444322
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
.+||.||++|--++.+.=|+-+|+++..+.
T Consensus 399 ----------------------------------------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---------- 428 (559)
T KOG1155|consen 399 ----------------------------------------RAWYGLGQAYEIMKMHFYALYYFQKALELK---------- 428 (559)
T ss_pred ----------------------------------------HHHhhhhHHHHHhcchHHHHHHHHHHHhcC----------
Confidence 479999999999999999999999999773
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|.+......+ |+++.+.++.++||.+|.+++... .
T Consensus 429 ----------------------------PnDsRlw~aL------------G~CY~kl~~~~eAiKCykrai~~~-----d 463 (559)
T KOG1155|consen 429 ----------------------------PNDSRLWVAL------------GECYEKLNRLEEAIKCYKRAILLG-----D 463 (559)
T ss_pred ----------------------------CCchHHHHHH------------HHHHHHhccHHHHHHHHHHHHhcc-----c
Confidence 3334444433 999999999999999999999973 3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLA-------LEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~-------ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.+..+|..+|..|.+++++.+|..+|.+.|+ .+|+-.++..-+|.-+.+.++|++|-.+...+
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3678999999999999999999999999998 67888999999999999999999998888777
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-11 Score=139.01 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=75.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLL 326 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~ 326 (580)
..++..|++++|+..|++++... + ..|..+.. .+|.+|+.+|++++|+..|++++..+|.+ ...+..++.++
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~-~-~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~ 320 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEG-Q-IIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL 320 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccC-C-CCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence 34578899999999999998862 1 12333333 35999999999999999999999999876 46678888899
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
...|++++|+..|+++...
T Consensus 321 ~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 321 LESENYPGALTVTAHTINN 339 (765)
T ss_pred HhcccHHHHHHHHHHHhhc
Confidence 9999999999999999765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-12 Score=121.10 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|.-++.+|+|++|...|.+|+.. |. .+..+..|-|+|.|.+++|+++.|..++.++|++||+++.+...++..+...
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~--P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALAD--PA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhC--CC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 55555666666666666666662 43 4556778899999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
|+|-.|...+++..
T Consensus 187 ~~y~~Ar~~~~~~~ 200 (250)
T COG3063 187 GDYAPARLYLERYQ 200 (250)
T ss_pred ccchHHHHHHHHHH
Confidence 99999998888873
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.4e-12 Score=133.36 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=170.8
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
+.+|+.++-|...|++.. +.++=..|+..+.++|+++|.+-.++..+|.+|.-.|-=.+|+.++.+-| +..|..
T Consensus 313 kqdP~haeAW~~LG~~qa---ENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi---~~~p~y 386 (579)
T KOG1125|consen 313 KQDPQHAEAWQKLGITQA---ENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI---RNKPKY 386 (579)
T ss_pred hhChHHHHHHHHhhhHhh---hccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH---HhCccc
Confidence 478999999999998876 55566779999999999999999999999999999999999999999954 343322
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCC-CCCCCCCCCCCCCcccccch---HHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSG-GDSSDDSLGRDPSFKCFSVS---DLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~~~~~~---~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
...+ ... ...+.. +. ..++.+ ++++.++..--.+++......+..||.+|.-.
T Consensus 387 ~~l~-----------------~a~~~~~~~~----~~--s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 387 VHLV-----------------SAGENEDFEN----TK--SFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhcc-----------------ccCccccccC----Cc--CCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 1111 000 000000 00 112222 23333333333344444455678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
|+|+.|+.+|+.+|+.. |.+.....-+ |..
T Consensus 444 ~efdraiDcf~~AL~v~--------------------------------------Pnd~~lWNRL------------GAt 473 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK--------------------------------------PNDYLLWNRL------------GAT 473 (579)
T ss_pred hHHHHHHHHHHHHHhcC--------------------------------------CchHHHHHHh------------hHH
Confidence 99999999999999763 4444444433 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----------HHHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----------IQALDTR 322 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----------~~A~~~r 322 (580)
+-...+..+||..|++||++ .|....+.||+|.+++.+|-|++|+.++-.||.+.+.. -..|-.+
T Consensus 474 LAN~~~s~EAIsAY~rALqL-----qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tL 548 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQL-----QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTL 548 (579)
T ss_pred hcCCcccHHHHHHHHHHHhc-----CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHH
Confidence 99999999999999999998 56688899999999999999999999999999997651 1344444
Q ss_pred HHHHHhcCChhHH
Q 008039 323 ALLLETIRCLPDC 335 (580)
Q Consensus 323 a~~~~~lg~~~eA 335 (580)
-.++..+++.|-+
T Consensus 549 R~als~~~~~D~l 561 (579)
T KOG1125|consen 549 RLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHcCCchHH
Confidence 4555555555533
|
|
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=140.28 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=57.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++|+.+|||+|||+||++||||+++.. +.|+++|+.|+|||+ +|+|+.
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~--------------------~~AeeKFKEI~eAYE-VLsD~e 61 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--------------------KEAEEKFKEINEAYE-VLSDPE 61 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHH-HhCCHH
Confidence 57999999999999999999999999999999999852 589999999999999 678887
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 62 KRa~YD 67 (371)
T COG0484 62 KRAAYD 67 (371)
T ss_pred HHHHhh
Confidence 444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-11 Score=138.50 Aligned_cols=207 Identities=10% Similarity=-0.038 Sum_probs=159.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..|++++|+..|++++...|..+ .+....|.+++.+|++++|+..|++++ +..|.+...
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l---~~~p~~~~~----------------- 308 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELF---YHPETIADL----------------- 308 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh---hcCCCCCCC-----------------
Confidence 56899999999999999975432 234446999999999999999999965 222211100
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
....+..|+.++...|++++|+..++++....|..
T Consensus 309 -----------------------------------------~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~---- 343 (765)
T PRK10049 309 -----------------------------------------SDEELADLFYSLLESENYPGALTVTAHTINNSPPF---- 343 (765)
T ss_pred -----------------------------------------ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce----
Confidence 00124456778899999999999999987653210
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
.. .. ..+...|++......+.. |..+...|++++|+..|.+++..
T Consensus 344 -------~~-~~-------------~~~~~~p~~~~~~a~~~~----------a~~l~~~g~~~eA~~~l~~al~~---- 388 (765)
T PRK10049 344 -------LR-LY-------------GSPTSIPNDDWLQGQSLL----------SQVAKYSNDLPQAEMRARELAYN---- 388 (765)
T ss_pred -------Ee-ec-------------CCCCCCCCchHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHh----
Confidence 00 00 001123554433222333 88999999999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+..+++++|.++...|++++|+..+++++.++|++..+++.+|.++..+|+|++|...++++++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45578999999999999999999999999999999999999999999999999999999999999887
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-13 Score=132.56 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+.....++++||.||++|.|++||.||+++|.+ .|+++..+.||+.+|+++++|..|..||+.||.||-.+++||
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~-----~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAY 168 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV-----YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAY 168 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc-----CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 455666899999999999999999999999997 677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.+||.+...+|+..||..||+.+++|.
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 999999999999999999999999983
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-11 Score=127.59 Aligned_cols=190 Identities=18% Similarity=0.094 Sum_probs=132.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|+...-|...|..+. ..|++++|+..|+++|+++|++..++.++|.++...|++++|+++|++++ +..|+++
T Consensus 94 ~P~~~~a~~~lg~~~~---~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al---~~~P~~~- 166 (296)
T PRK11189 94 RPDMADAYNYLGIYLT---QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFY---QDDPNDP- 166 (296)
T ss_pred CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH-
Confidence 4455555666666665 67999999999999999999999999999999999999999999999966 3333222
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
....|. ..+...+++++|
T Consensus 167 -----------------------------------------------------------~~~~~~---~l~~~~~~~~~A 184 (296)
T PRK11189 167 -----------------------------------------------------------YRALWL---YLAESKLDPKQA 184 (296)
T ss_pred -----------------------------------------------------------HHHHHH---HHHHccCCHHHH
Confidence 000111 234457899999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|.+..... +|+.- . . +...+..|+
T Consensus 185 ~~~l~~~~~~~-------------------------------------~~~~~---~-~------------~~~~~~lg~ 211 (296)
T PRK11189 185 KENLKQRYEKL-------------------------------------DKEQW---G-W------------NIVEFYLGK 211 (296)
T ss_pred HHHHHHHHhhC-------------------------------------Ccccc---H-H------------HHHHHHccC
Confidence 99997755321 11110 0 1 445555666
Q ss_pred HHHH--HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCC
Q 008039 259 YSEA--IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRC 331 (580)
Q Consensus 259 y~eA--i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~ 331 (580)
+.++ +..+.++++. .+...+....+|+++|.++..+|++++|+.+|++|++++| ++++..+.+.++....+.
T Consensus 212 ~~~~~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 212 ISEETLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred CCHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 6443 3333333221 1111234678999999999999999999999999999996 888888777766655443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-11 Score=113.93 Aligned_cols=203 Identities=15% Similarity=0.106 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..+..|..|...+ .+||+..|...+++||+++|++..+|..+|.+|..+|..+-|-+.|++++ .++|++.
T Consensus 34 aa~arlqLal~YL---~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~G---- 103 (250)
T COG3063 34 AAKARLQLALGYL---QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNG---- 103 (250)
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCcc----
Confidence 4455788888888 79999999999999999999999999999999999999999999999966 3343322
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
..+.+.|..+|..|++++|+..
T Consensus 104 ----------------------------------------------------------dVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 104 ----------------------------------------------------------DVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred ----------------------------------------------------------chhhhhhHHHHhCCChHHHHHH
Confidence 1355679999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++... . -|..... +.+. |.+.++.|+++.
T Consensus 126 F~~Al~~P-------~-----------------------------Y~~~s~t--~eN~----------G~Cal~~gq~~~ 157 (250)
T COG3063 126 FERALADP-------A-----------------------------YGEPSDT--LENL----------GLCALKAGQFDQ 157 (250)
T ss_pred HHHHHhCC-------C-----------------------------CCCcchh--hhhh----------HHHHhhcCCchh
Confidence 99988531 0 0111222 1222 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|...|+++|++ +| .+......++..+++-|+|..|..++++-..--+-....+..-..+-..+|+-+.+-.+=.+
T Consensus 158 A~~~l~raL~~-dp----~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 158 AEEYLKRALEL-DP----QFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHHHHh-Cc----CCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999997 34 36667788999999999999999999999888888888888888888899999888777666
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 233 L~r~ 236 (250)
T COG3063 233 LQRL 236 (250)
T ss_pred HHHh
Confidence 6655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.5e-12 Score=124.64 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.|+-..+.+. .......|+..|.+.|+..|.+..++.-.|+++-.++++++|++.|+.++ +..|.+.
T Consensus 255 ~~dTfllLskvY~---ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl---k~~~~nv---- 324 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQ---RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVL---KLHPINV---- 324 (478)
T ss_pred chhHHHHHHHHHH---HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH---hcCCccc----
Confidence 4444544444443 45778999999999999999999999999999999999999999999965 3322222
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
.++- .+|.-||.-|+.|-|+.+
T Consensus 325 ------------------------------EaiA----------------------------cia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 325 ------------------------------EAIA----------------------------CIAVGYFYDNNPEMALRY 346 (478)
T ss_pred ------------------------------eeee----------------------------eeeeccccCCChHHHHHH
Confidence 1121 246678999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++.+++.- .+... +.+. |.+++-.++|+-
T Consensus 347 YRRiLqmG~--------------------------------------~speL--f~Ni----------gLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 347 YRRILQMGA--------------------------------------QSPEL--FCNI----------GLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhcC--------------------------------------CChHH--HhhH----------HHHHHhhcchhh
Confidence 999998831 01111 1122 899999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++..|.+|+... .+....+++|||+|.+....|++.-|-..|.-+|..||++.+++.++|.+-...|+.++|...|+.
T Consensus 377 ~L~sf~RAlsta--t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 377 VLPSFQRALSTA--TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hHHHHHHHHhhc--cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999999973 334557899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
+..+
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 9766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-11 Score=119.70 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=138.3
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPS 133 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 133 (580)
+.++..+..++.+|..++..|+|++|+..|++++ ...|.++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~---~~~p~~~------------------------------------ 67 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALE---SRYPFSP------------------------------------ 67 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCch------------------------------------
Confidence 5677889999999999999999999999999965 2222111
Q ss_pred cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC
Q 008039 134 FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS 213 (580)
Q Consensus 134 ~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~ 213 (580)
....+++.+|.+++.+|++++|+..|+++++..
T Consensus 68 -----------------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------ 100 (235)
T TIGR03302 68 -----------------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------------------------ 100 (235)
T ss_pred -----------------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC------------------------
Confidence 001257889999999999999999999999773
Q ss_pred CCCCCCCCCCCCCCCChHHH-HHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhccCCCCCcccHHH
Q 008039 214 NNHQTPPATPPRTMTESESV-SQLLSHIKLLLRRRTAAIAALDA--------GLYSEAIRHFSKIVDGRRGAPQGFLAEC 284 (580)
Q Consensus 214 ~~~~~~~~~~~~~dPd~~~~-~~ll~~~k~~~~~k~~G~~~~~~--------g~y~eAi~~y~~AL~~~~~~~~~~~a~~ 284 (580)
|++... ..++.. |..++.. |++++|+..|.+++.. .|.+ +....+
T Consensus 101 --------------p~~~~~~~a~~~~----------g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~a 154 (235)
T TIGR03302 101 --------------PNHPDADYAYYLR----------GLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS-EYAPDA 154 (235)
T ss_pred --------------cCCCchHHHHHHH----------HHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC-hhHHHH
Confidence 222221 123333 7777765 8999999999999996 3432 111111
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 285 --------------YMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 285 --------------~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
..++|.+|+..|++.+|+..+.+++...|+ ..++++.+|.++..+|++++|+..++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 247899999999999999999999999665 56899999999999999999999888774
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=126.48 Aligned_cols=226 Identities=14% Similarity=0.101 Sum_probs=174.2
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
.|.....+...+..+. .+|+|+.|+..+..||.+ .|.-...+...|.+|+.+++|.+|+.+|++++.-.
T Consensus 195 ~P~~~~~~~~La~~y~---~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYA---VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred CchHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3444444555555554 689999999999999999 88888888889999999999999999999987321
Q ss_pred hhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHH
Q 008039 91 KMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACC 170 (580)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~ 170 (580)
+. .+..+ .....-.+.+||.+|.
T Consensus 272 e~-----------------------~~G~~----------------------------------h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 272 EE-----------------------VFGED----------------------------------HPAVAATLNNLAVLYY 294 (508)
T ss_pred HH-----------------------hcCCC----------------------------------CHHHHHHHHHHHHHHh
Confidence 11 11111 0011125788999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
..|++++|..+++++++|... . + -..+..+...+ .+.+
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~------~------~---------------------~~~~~~v~~~l---------~~~~ 332 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEK------L------L---------------------GASHPEVAAQL---------SELA 332 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHH------h------h---------------------ccChHHHHHHH---------HHHH
Confidence 999999999999999998432 0 0 01223332222 2238
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccC--C-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCcHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRR--G-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSCIQAL 319 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~--~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~~~A~ 319 (580)
..+...++|++|+.+|.+++++.. + ..++..+..+.|+|.+|+++|+|.+|.+.+.+||.+ ++.....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 899999999999999999988732 2 223356889999999999999999999999999977 34557889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|..+.+++.+.+|...|.+++.+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999999999999998885
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-10 Score=124.93 Aligned_cols=230 Identities=17% Similarity=0.112 Sum_probs=172.0
Q ss_pred ccccchhhhHHHHHH-HHHHHHHhhChhhHHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHccChHHHHHHHH
Q 008039 14 HWWLSNRKIVDKYIR-DARTLIATQEHSEIASALSLLDAALA--------LSPRLELALELKARSLLYLRRFKDVADMLQ 84 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~Al~~~~~Al~--------l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~ 84 (580)
+|.+.++ .|...++ .|..+. ..+++.+|+.+|.+||. .+|..+..+.++|.+|...|+|++|..+|+
T Consensus 232 ~~G~~hl-~va~~l~~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e 307 (508)
T KOG1840|consen 232 TSGLKHL-VVASMLNILALVYR---SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCE 307 (508)
T ss_pred ccCccCH-HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 4444444 3444444 555555 68999999999999997 467888899999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHH
Q 008039 85 DYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLV 164 (580)
Q Consensus 85 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~ 164 (580)
+++.-.+. ++... ..+|.+ .+..
T Consensus 308 ~Al~I~~~-----------------------~~~~~----------------------~~~v~~------------~l~~ 330 (508)
T KOG1840|consen 308 RALEIYEK-----------------------LLGAS----------------------HPEVAA------------QLSE 330 (508)
T ss_pred HHHHHHHH-----------------------hhccC----------------------hHHHHH------------HHHH
Confidence 97732111 00000 112222 3567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
++.++..++++++|+.+|++++++... .+ -+++..+.....
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~------------~~---------------------g~~~~~~a~~~~------ 371 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLD------------AP---------------------GEDNVNLAKIYA------ 371 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHh------------hc---------------------cccchHHHHHHH------
Confidence 899999999999999999999988421 00 123322222221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCC
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-------EPS 314 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-------dP~ 314 (580)
+.|..+++.|+|.+|.+.|.+||.... ..........+.++|..|..++++.+|...|.+++.+ .|+
T Consensus 372 ---nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 372 ---NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred ---HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 129999999999999999999999731 2224445678899999999999999999999998876 456
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
-.-.|.++|.+|..+|+|++|+...++++...
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999997664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=113.25 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=88.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+..|.+++.++|+++.+++++|.++..+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999888
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-11 Score=126.72 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
-|+..|--++ ..|++.+|-..|.+|-.++|....+|...|.++...++.+.|+.+|..+-+.
T Consensus 314 sW~aVg~YYl---~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--------------- 375 (611)
T KOG1173|consen 314 SWFAVGCYYL---MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--------------- 375 (611)
T ss_pred chhhHHHHHH---HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh---------------
Confidence 3445554444 4578888888888888888888888888888888888888888888774421
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+.. ....+.+|.-|..+++++-|-.+|..
T Consensus 376 ------------~~G~--------------------------------------hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 376 ------------MPGC--------------------------------------HLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred ------------ccCC--------------------------------------cchHHHHHHHHHHhccHHHHHHHHHH
Confidence 1100 11355578888889999999999988
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++.++| .+.-+ +.+.|.++|..+.|.+|+.
T Consensus 406 A~ai~P--------------------------------------~Dplv------------~~Elgvvay~~~~y~~A~~ 435 (611)
T KOG1173|consen 406 ALAIAP--------------------------------------SDPLV------------LHELGVVAYTYEEYPEALK 435 (611)
T ss_pred HHhcCC--------------------------------------Ccchh------------hhhhhheeehHhhhHHHHH
Confidence 887642 11111 2233999999999999999
Q ss_pred HHHHHHhccCC--CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRG--APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~--~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+|..++..... +..+.-..++.|+|.++.+++++.+||..++++|.+.|.++.+|...|-+|..+|+++.|+..|.++
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999853211 1123456779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+-+
T Consensus 516 L~l 518 (611)
T KOG1173|consen 516 LAL 518 (611)
T ss_pred Hhc
Confidence 877
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-11 Score=132.98 Aligned_cols=221 Identities=14% Similarity=0.127 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
++.|...|..++.-+|.+..++..+|.+.+..++|..|+.+|++++ ..+|... ++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al---~inp~~~---------------------aD- 200 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKAL---RINPACK---------------------AD- 200 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHH---hcCcccC---------------------CC-
Confidence 6888999999999999999999999999999999999999999855 3433211 11
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh-hccc
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE-SISL 200 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~-~~~~ 200 (580)
.-+.+|.|++.+|+.+.|+..|+++++|+|...+.- .+..
T Consensus 201 ---------------------------------------~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 201 ---------------------------------------VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred ---------------------------------------ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 012346777888888888888888888765322210 0000
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 201 SDDSFPFSKFPVSNNHQT----PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~----~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
..-.|. ..++.. .....-..+|.+..+..++ ++-+|-.|+|..+...+..++.. ..
T Consensus 242 ~~l~~~------d~~s~~~~~~ll~~ay~~n~~nP~~l~~L------------An~fyfK~dy~~v~~la~~ai~~--t~ 301 (1018)
T KOG2002|consen 242 VDLNFN------DSDSYKKGVQLLQRAYKENNENPVALNHL------------ANHFYFKKDYERVWHLAEHAIKN--TE 301 (1018)
T ss_pred HHHHcc------chHHHHHHHHHHHHHHhhcCCCcHHHHHH------------HHHHhhcccHHHHHHHHHHHHHh--hh
Confidence 000000 000000 0000001123444444444 77888889999999888888885 23
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.+..+..+|++|.+|..+|+|+.|..+|.+++..+|++ .-+++.+|+++...|++++|+.+|+++++.+
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 355667778899999999999999999999999988887 8888899999999999999999999887764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=111.74 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.+|.+++..|++++|+..|++++.+ +|++..+...+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------------~P~~~~a~~~l---- 64 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------------------------------------QPWSWRAHIAL---- 64 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------CCCcHHHHHHH----
Confidence 556899999999999999999999876 35555544443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.++...|+|++|+..|.+++.+ .|.++.+++++|.|+..+|++++|+..|.++|.++|+++..+..
T Consensus 65 --------g~~~~~~g~~~~A~~~y~~Al~l-----~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 65 --------AGTWMMLKEYTTAINFYGHALML-----DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred --------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999999997 45588999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 008039 322 RALLLETIR 330 (580)
Q Consensus 322 ra~~~~~lg 330 (580)
+|.+...++
T Consensus 132 ~~~~~~~l~ 140 (144)
T PRK15359 132 RQNAQIMVD 140 (144)
T ss_pred HHHHHHHHH
Confidence 999886543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-11 Score=134.48 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..+++||.+....|.+++|..+++++++++ |++..+...+
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--------------------------------------Pd~~~a~~~~-- 126 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF--------------------------------------PDSSEAFILM-- 126 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--------------------------------------CCcHHHHHHH--
Confidence 468899999999999999999999999873 7778777666
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+.++++.+++++|+..+.+++.. .|.++..++++|.++..+|++++|+..|++++..+|++..++
T Consensus 127 ----------a~~L~~~~~~eeA~~~~~~~l~~-----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~ 191 (694)
T PRK15179 127 ----------LRGVKRQQGIEAGRAEIELYFSG-----GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY 191 (694)
T ss_pred ----------HHHHHHhccHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence 89999999999999999999997 466999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|.++..+|+.++|...|++++++
T Consensus 192 ~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 192 VGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-12 Score=131.91 Aligned_cols=227 Identities=11% Similarity=-0.004 Sum_probs=167.5
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
+|..+| .+|.|++|+++|.+++.++|.++.++.+||.+|+.+++|.-|..+|..+|..
T Consensus 103 ~GN~yF---KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL------------------- 160 (536)
T KOG4648|consen 103 RGNTYF---KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL------------------- 160 (536)
T ss_pred hhhhhh---hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-------------------
Confidence 334455 5899999999999999999999999999999999999999999999997721
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.+.. .-+|...|.+.+.+|+.++|.+.++.+++|
T Consensus 161 ----------------------------------d~~Y------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 161 ----------------------------------DKLY------------VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred ----------------------------------hHHH------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 0111 125778899999999999999999999988
Q ss_pred HHHh--hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 189 ATAA--FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 189 ~~~~--~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
.|.. .+.... ...+. ... ...+++.|....+.+ ........+..|+.+++.|.|+-+|.+|
T Consensus 195 EP~~~ELkK~~a--~i~Sl------~E~------~I~~KsT~G~~~A~Q---~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~ 257 (536)
T KOG4648|consen 195 EPKNIELKKSLA--RINSL------RER------KIATKSTPGFTPARQ---GMIQILPIKKPGYKFSKKAMRSVPVVDV 257 (536)
T ss_pred CcccHHHHHHHH--Hhcch------Hhh------hHHhhcCCCCCcccc---chhhhccccCcchhhhhhhccccceeEe
Confidence 5431 111100 00000 000 000111111111111 0112334566699999999999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 267 ~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
...+...+ .+..+-.+ +..|.+..++..++.+|.+++-++|.+.++..+++.+-.-+|...|+..+++.++.+.
T Consensus 258 ~~~~A~~~-----~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~ 331 (536)
T KOG4648|consen 258 VSPRATID-----DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVA 331 (536)
T ss_pred eccccccC-----ccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeec
Confidence 98887532 13333344 8889999999999999999999999999999999999999999999999999998873
|
|
| >KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.7e-12 Score=128.00 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=59.3
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...|||++|||++++++.+||+|||+|||++||||+++. +.|.+.|+.|+.||+ |++|+
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--------------------p~A~e~F~~in~AYE-VLsDp 72 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--------------------PNANEKFKEINAAYE-VLSDP 72 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------------------HHHHHHHHHHHHHHH-HhcCH
Confidence 467999999999999999999999999999999999885 478999999999999 67888
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
-.|..+.+-
T Consensus 73 ekRk~YD~~ 81 (336)
T KOG0713|consen 73 EKRKHYDTY 81 (336)
T ss_pred HHHHHHHhh
Confidence 755555433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-10 Score=124.53 Aligned_cols=212 Identities=16% Similarity=0.143 Sum_probs=171.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
-+|+-|..++-.+...+...+...+..++.++.++..++|.+|.++..+|.-++..|.|.-|......++....-
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~----- 302 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN----- 302 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh-----
Confidence 467778888888877777777788999999999999999999999999999999999999999988887732100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
+.++ ...+|.+|.+|..+|++++
T Consensus 303 ----------------------------------------------~~~~-----------aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 303 ----------------------------------------------KSIK-----------AESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred ----------------------------------------------hHHH-----------HHHHHHHHHHHHhhccHHH
Confidence 0011 1247889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|..+|..+++.+ .+.|.+ .++.. |..++..|
T Consensus 326 A~~yY~~s~k~~------------~d~~~l---------------------------~~~Gl----------gQm~i~~~ 356 (1018)
T KOG2002|consen 326 AFKYYMESLKAD------------NDNFVL---------------------------PLVGL----------GQMYIKRG 356 (1018)
T ss_pred HHHHHHHHHccC------------CCCccc---------------------------cccch----------hHHHHHhc
Confidence 999999988653 222222 22223 89999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG----RIAESIADCNKTLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg----~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
+++.|+.+|.+++.. .|.+.....-+|..|...+ ..+.|.....++++..|.+..+|..+|.++....-+-
T Consensus 357 dle~s~~~fEkv~k~-----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQ-----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred hHHHHHHHHHHHHHh-----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 999999999999997 3457788888898888876 6788999999999999999999999999997776666
Q ss_pred HHHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLLY 346 (580)
Q Consensus 334 eAi~~~~~al~l~ 346 (580)
. +..|.+|+.+.
T Consensus 432 s-L~~~~~A~d~L 443 (1018)
T KOG2002|consen 432 S-LDAYGNALDIL 443 (1018)
T ss_pred H-HHHHHHHHHHH
Confidence 6 99999999775
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.1e-11 Score=119.76 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...+.+-.+|-.++ ..++|.+|+..|++||+++|.++.+|.+||.+|.+||.|+.|+++|+.+| .++|..
T Consensus 79 ~~AE~LK~eGN~~m---~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~y---- 148 (304)
T KOG0553|consen 79 ALAESLKNEGNKLM---KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHY---- 148 (304)
T ss_pred HHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHH----
Confidence 34445556666666 67999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
.-+|..||.+|+.+|++++|++
T Consensus 149 ----------------------------------------------------------skay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 149 ----------------------------------------------------------SKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHccCcHHHHHH
Confidence 1258889999999999999999
Q ss_pred HHHHHHHH
Q 008039 181 LLQTGKRL 188 (580)
Q Consensus 181 ~l~~al~l 188 (580)
.|++++.|
T Consensus 171 aykKaLel 178 (304)
T KOG0553|consen 171 AYKKALEL 178 (304)
T ss_pred HHHhhhcc
Confidence 99999976
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-10 Score=115.33 Aligned_cols=188 Identities=10% Similarity=-0.023 Sum_probs=147.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh--HHHHHHHHhhhhhhhhcC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHS-EIASALSLLDAALALSPRLELALELKARSLLYLRRF--KDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~-d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~--~eAi~~~~~~l~~l~~~~ 94 (580)
.||+...-|...+..+. ..| ++.+++..+++++..+|.+..+|..|+.++..++++ +++++++.++| ..+|
T Consensus 66 lnP~~ytaW~~R~~iL~---~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal---~~dp 139 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLE---ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL---SLDA 139 (320)
T ss_pred HCchhHHHHHHHHHHHH---HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH---HhCc
Confidence 46666666666666665 345 689999999999999999999999999999999984 67888888855 2222
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
. ...+|..+|.++..+|+
T Consensus 140 k--------------------------------------------------------------Ny~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 140 K--------------------------------------------------------------NYHAWSHRQWVLRTLGG 157 (320)
T ss_pred c--------------------------------------------------------------cHHHHHHHHHHHHHhhh
Confidence 1 12467789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+++++++++++ |.+..+.... |.++.
T Consensus 158 ~~eeL~~~~~~I~~d--------------------------------------~~N~sAW~~R------------~~vl~ 187 (320)
T PLN02789 158 WEDELEYCHQLLEED--------------------------------------VRNNSAWNQR------------YFVIT 187 (320)
T ss_pred HHHHHHHHHHHHHHC--------------------------------------CCchhHHHHH------------HHHHH
Confidence 999999999998763 4444444333 55554
Q ss_pred Hc---CCH----HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 255 DA---GLY----SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 255 ~~---g~y----~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
+. |.+ ++++.+..++|.+ .|.+..+|++++.++.. +++..+|+..|.+++..+|+++.|+-.++
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLL 262 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHH
Confidence 44 333 5788888899997 45578899999999988 56778899999999999999999999999
Q ss_pred HHHHh
Q 008039 324 LLLET 328 (580)
Q Consensus 324 ~~~~~ 328 (580)
.+|..
T Consensus 263 d~~~~ 267 (320)
T PLN02789 263 DLLCE 267 (320)
T ss_pred HHHHh
Confidence 99986
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-09 Score=117.76 Aligned_cols=225 Identities=12% Similarity=0.115 Sum_probs=156.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH-Hhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER-VKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~l 116 (580)
..|+++.|+..++++++.+|+++.++...+.+|+..|++++|++.+....+.....+.. ...++... ..+
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~---------~~~l~~~a~~~l 235 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH---------RAMLEQQAWIGL 235 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH---------HHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998887755322111100 00010000 001
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+..... +. +...+ ..+...+.... ......+..++..+...|+.++|...++++++.
T Consensus 236 ~~~~~~--------~~-----~~~~l-~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-------- 292 (398)
T PRK10747 236 MDQAMA--------DQ-----GSEGL-KRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-------- 292 (398)
T ss_pred HHHHHH--------hc-----CHHHH-HHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 100000 00 00111 11111111100 112234567899999999999999999988753
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
.|++ ....++ .....+++++++....+.++.
T Consensus 293 ------------------------------~~~~-~l~~l~--------------~~l~~~~~~~al~~~e~~lk~---- 323 (398)
T PRK10747 293 ------------------------------QYDE-RLVLLI--------------PRLKTNNPEQLEKVLRQQIKQ---- 323 (398)
T ss_pred ------------------------------CCCH-HHHHHH--------------hhccCCChHHHHHHHHHHHhh----
Confidence 1222 222222 223559999999999999996
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++.+++.+|..++..|+|++|..+++++++++|++.. +..++.++..+|+.++|...|++++.+
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668899999999999999999999999999999998655 668999999999999999999999877
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=123.16 Aligned_cols=95 Identities=24% Similarity=0.238 Sum_probs=90.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
++..|+.+|..|+|.+|+.+|+++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++|.++|++..+|+++|.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 455699999999999999999999997 445789999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
|..+|+|++|+..|++++++
T Consensus 80 ~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999988
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=121.08 Aligned_cols=292 Identities=15% Similarity=0.067 Sum_probs=173.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
-||+-.+.|...+.... ++|.+..|.-+|++||..+|.+-.+++.|+..|..+|.+..|++.|.++++.+. |.|+
T Consensus 202 L~p~d~e~W~~ladls~---~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~ 276 (895)
T KOG2076|consen 202 LNPKDYELWKRLADLSE---QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDI 276 (895)
T ss_pred cCCCChHHHHHHHHHHH---hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhH
Confidence 46666677777775554 688899999999999999999999999999999999999999999998664422 1111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.. -..+-+..++...... +-+-+-+.+..-++...+.....-+..++..+.....++.
T Consensus 277 er------~~d~i~~~~~~~~~~~----------------~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 277 ER------IEDLIRRVAHYFITHN----------------ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred HH------HHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 00 0000000000000000 0000011111222222222223335567778888888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC----------CCCC-ChHHHHHHHHH------H
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPP----------RTMT-ESESVSQLLSH------I 240 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~----------~~dP-d~~~~~~ll~~------~ 240 (580)
|+..........+. ....+|..+.+-.......-+.+...+..+ +++- +...+...+-. .
T Consensus 335 ~~~~i~~~~~r~~e---~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 335 ALMKIVDDRNRESE---KDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred hhHHHHHHhccccC---CChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 87766554431100 000011000000000000000011111111 0000 00111110000 0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
....-+.+-+.++...|+|.+|+..|..++.. ++. .+..+|+++|.||..+|.++.|+..|.++|.++|++.++.+
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~---~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGY---QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccc---cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 11222456688999999999999999999985 332 25889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.++.++..+|++++|++.++...
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999888763
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=117.68 Aligned_cols=228 Identities=12% Similarity=0.078 Sum_probs=155.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH-HHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS-RERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l 116 (580)
..|+++.|+..++..++.+|+++.++...+.+++..|++++|++.+...++. ...++ .....+. .....+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~~~~~------~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---GLFDD------EEFADLEQKAEIGL 235 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---CCCCH------HHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999888875522 11000 0000000 000001
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEK--EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~--~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
+.... .+. ++. .+.......+.. .....++.+|..+...|++++|+..++++++..
T Consensus 236 l~~~~--------~~~-----~~~----~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 236 LDEAM--------ADE-----GID----GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred HHHHH--------Hhc-----CHH----HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 10000 000 000 111111112211 233456778999999999999999999998762
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS-QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~-~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|++.... ..+. ....+..++...++..++++++.
T Consensus 294 ---------------------------------pd~~~~~~~~l~-----------~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 294 ---------------------------------GDDRAISLPLCL-----------PIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred ---------------------------------CCcccchhHHHH-----------HhhhcCCCChHHHHHHHHHHHHh-
Confidence 3332211 1111 22334568889999999999996
Q ss_pred CCCCCcccH--HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 274 RGAPQGFLA--ECYMHRAFAYRSSGRIAESIADCN--KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 274 ~~~~~~~~a--~~~~nra~a~~~lg~~~eAl~~~~--~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++ .++..+|.+++++|+|++|..+++ .+++.+|+... +..+|.++..+|+.++|...|++++.+.
T Consensus 329 ----~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 ----VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred ----CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44466 888899999999999999999999 68889998877 5599999999999999999999998774
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-10 Score=110.21 Aligned_cols=101 Identities=19% Similarity=0.104 Sum_probs=91.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH-HHcCC--hHHHHHH
Q 008039 228 TESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY-RSSGR--IAESIAD 304 (580)
Q Consensus 228 Pd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~-~~lg~--~~eAl~~ 304 (580)
|++......+ |..+...|+|++|+..|.+++.+ .|.+..+++++|.++ ...|+ +++|+..
T Consensus 70 P~~~~~w~~L------------g~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 70 PQNSEQWALL------------GEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred CCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 5566555554 99999999999999999999998 455899999999985 77788 5999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++++++|+++.+++.+|.++..+|+|++|+..|++++++
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=105.21 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=88.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|++++|...|.-.+.+ +|.++..|+|+|.|+..+|+|.+||..|.+|+.++|+++.++++.|.|++.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 99999999999999999999998 5668999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|+.+.|...|+.++.+.
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999884
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-11 Score=118.81 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+++.||.+|+.++|..|+.+|+++|... -.+...++.+|.|||.|.+.+|+|..||.||.+++.++|++.+|+++-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKK-CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4667888999999999999999999999963 334567999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|.|+..+.+|.+|+...+..++++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999988876664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-09 Score=122.19 Aligned_cols=200 Identities=14% Similarity=0.159 Sum_probs=157.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.+|..++.....+...+ .+||+..|+..|.++++.+|.++.++.-.+.++..+|++++|+..|++++ .|++.
T Consensus 29 ~~p~~~~~~y~~aii~~---r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~ 100 (822)
T PRK14574 29 VNPAMADTQYDSLIIRA---RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNI 100 (822)
T ss_pred cCccchhHHHHHHHHHH---hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCC
Confidence 35666676667776666 79999999999999999999997555578888889999999999999965 11111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.......+|.++..+|++++
T Consensus 101 ------------------------------------------------------------~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 101 ------------------------------------------------------------SSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred ------------------------------------------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 01123345789999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+++|+++++. +|++..+...+ +..+...+
T Consensus 121 Aiely~kaL~~--------------------------------------dP~n~~~l~gL------------a~~y~~~~ 150 (822)
T PRK14574 121 ALALWQSSLKK--------------------------------------DPTNPDLISGM------------IMTQADAG 150 (822)
T ss_pred HHHHHHHHHhh--------------------------------------CCCCHHHHHHH------------HHHHhhcC
Confidence 99999999876 35555544332 77888999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++++|+..+.+++.. +| .+. .+..++.++..++++.+|+..++++++++|++.++++.+..++...|-.+-|++
T Consensus 151 q~~eAl~~l~~l~~~-dp----~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 151 RGGVVLKQATELAER-DP----TVQ-NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred CHHHHHHHHHHhccc-Cc----chH-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999999999996 23 222 234456666667888789999999999999999999999999999999999887
Q ss_pred HHHH
Q 008039 338 DLEH 341 (580)
Q Consensus 338 ~~~~ 341 (580)
...+
T Consensus 225 l~~~ 228 (822)
T PRK14574 225 LAKE 228 (822)
T ss_pred HHHh
Confidence 6664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.1e-09 Score=111.40 Aligned_cols=273 Identities=14% Similarity=0.111 Sum_probs=187.1
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+..++ ..+++.+.+.+++..++++|-+...+-.+-.||..+|+..+=..+-.+.+
T Consensus 249 ~~ad~~y---~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-------------------- 305 (611)
T KOG1173|consen 249 EKADRLY---YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV-------------------- 305 (611)
T ss_pred HHHHHHH---HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--------------------
Confidence 4444444 45677777777777777777776666665557777776665443322211
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
++. |.++ -.|+..|.-|...|++.+|..+|.++-.
T Consensus 306 -------~~y------------------------------------P~~a--~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 306 -------DLY------------------------------------PSKA--LSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred -------HhC------------------------------------CCCC--cchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 111 1111 1477889999999999999999999887
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
+ ||..+...-.+ |..+--.|..++|+.+|.
T Consensus 341 l--------------------------------------D~~fgpaWl~f------------ghsfa~e~EhdQAmaaY~ 370 (611)
T KOG1173|consen 341 L--------------------------------------DPTFGPAWLAF------------GHSFAGEGEHDQAMAAYF 370 (611)
T ss_pred c--------------------------------------CccccHHHHHH------------hHHhhhcchHHHHHHHHH
Confidence 6 35556655555 889999999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.|-++- +....-+..+|.-|..+++++-|-..|..|+.+.|+++-.+..+|.+....+.|.+|+..|+.++...+
T Consensus 371 tAarl~-----~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 371 TAARLM-----PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHhc-----cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 999973 223333556799999999999999999999999999999999999999999999999999999986643
Q ss_pred HhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCC-CCHHHHHHHHHHHHhhcCC
Q 008039 348 AILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRG-CSRSELERAHLLLSLRHKP 426 (580)
Q Consensus 348 ~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~-a~~~ei~~ayr~lal~~hP 426 (580)
..+.. .+.|.+-..--+-+.++++.....+...++.+.. .....++|..+|.-.. ..--+-..-|.+.||-..|
T Consensus 446 ~~~~e----~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 446 SVLNE----KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hcccc----ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 32211 1246652221234445566666666555543333 2455566666664211 1111222337888999999
Q ss_pred CC
Q 008039 427 DK 428 (580)
Q Consensus 427 Dk 428 (580)
|.
T Consensus 521 ~n 522 (611)
T KOG1173|consen 521 DN 522 (611)
T ss_pred cc
Confidence 86
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=111.48 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+++.||.+|...+|..||.+|.++|.+ .|..+..|.|++.||+++++|+.+..+|.+|++++|+.+++++.+
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~-----nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~fl 84 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICI-----NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFL 84 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhc-----CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHH
Confidence 356678899999999999999999999998 466789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|.+++....|++||..++++..+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999998884
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-09 Score=119.65 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQE-HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~-~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
.+.+.+++..+.... -....+++..+.....--|.++.++.++|.++..+|+++||...++.++ +.+|++.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~----- 120 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSS----- 120 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcH-----
Confidence 345555655553211 1233444444444555679999999999999999999999999999944 4555433
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
-+.+.++.++..++++++|+..+
T Consensus 121 ---------------------------------------------------------~a~~~~a~~L~~~~~~eeA~~~~ 143 (694)
T PRK15179 121 ---------------------------------------------------------EAFILMLRGVKRQQGIEAGRAEI 143 (694)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhccHHHHHHHH
Confidence 14667899999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
++++.. +|++......+ |.++.+.|+|++|
T Consensus 144 ~~~l~~--------------------------------------~p~~~~~~~~~------------a~~l~~~g~~~~A 173 (694)
T PRK15179 144 ELYFSG--------------------------------------GSSSAREILLE------------AKSWDEIGQSEQA 173 (694)
T ss_pred HHHhhc--------------------------------------CCCCHHHHHHH------------HHHHHHhcchHHH
Confidence 998865 36666555554 8999999999999
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 263 IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
+.+|.+++.. .|....++.++|.++..+|+.++|...|.+||....+-.+.|.++.
T Consensus 174 ~~~y~~~~~~-----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 174 DACFERLSRQ-----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999983 4558899999999999999999999999999999887778766553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-09 Score=113.40 Aligned_cols=248 Identities=17% Similarity=0.095 Sum_probs=163.9
Q ss_pred hChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC----C----Cc---
Q 008039 37 QEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS----S----DS--- 104 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~----~----~~--- 104 (580)
..+++..+|++...++|+++| +++.+|.++|.++-..+||.+|+...+.++. ..|+|.+--- - ..
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~---E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE---EFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---HhhhhhhhchhhhhhhhhcccHHH
Confidence 357899999999999999955 7789999999999999999999999888663 2221110000 0 00
Q ss_pred h----hhHh--HH---------HHHhhh--cCCCCCCCCCCCCCCCcccccchHHHHHHHH-----h-------hhcccc
Q 008039 105 S----SQQL--SR---------ERVKLL--HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMA-----G-------LCRNCE 155 (580)
Q Consensus 105 ~----~~~~--~~---------~~~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~-----~-------l~~~~~ 155 (580)
+ ...+ ++ .+.+++ ..+.+.... .+.+..-.+ ..+-+.+-. + ..-.+.
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~-q~~~a~s~s---r~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALS-QPTDAISTS---RYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcc-cccccchhh---HHHHHHHHhhhhhcccccccCcccccCC
Confidence 0 0000 00 000000 000000000 000000000 000000000 0 000111
Q ss_pred ccchh-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008039 156 KEGQW-----RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES 230 (580)
Q Consensus 156 ~~~~~-----~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~ 230 (580)
+...| .|...+..+...+..++|..++.++..+. |
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------------------------------------~-- 681 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------------------------------------P-- 681 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------------------------------------h--
Confidence 22222 35667888888899999998888877652 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHH--HHHHH
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIA--DCNKT 308 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~--~~~~A 308 (580)
.....++.. |..+...|++.+|.+.|..|+.+ +|....+...+|.++...|+..-|.. ....+
T Consensus 682 l~~~~~~~~----------G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 682 LSASVYYLR----------GLLLEVKGQLEEAKEAFLVALAL-----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred hhHHHHHHh----------hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 223333333 99999999999999999999998 34467788899999999999888888 99999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++||.+.++|+.+|.++..+|+.++|..+|+.+++|.
T Consensus 747 lr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 747 LRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999994
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=108.51 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-------CCC------CcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-------GAP------QGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-------~~~------~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
+++.+..+..+||.+|+.|+|.+|+..|..||...+ |.. ......++.|.|+|++..|+|.++++.|
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 455666778889999999999999999999977421 110 1235678999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 306 ~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..|..+|++.+|||+||.++...-+..+|..||.+++++.
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999884
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-09 Score=108.98 Aligned_cols=91 Identities=16% Similarity=-0.025 Sum_probs=80.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH----HHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI----QALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~----~A~~~ra~~ 325 (580)
|..+...|++++|+..|.+++++ .|.+..++..+|.++...|++++|+..+.+++.+.|..+ ..++.+|.+
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 88999999999999999999997 344678899999999999999999999999999987432 456789999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+...|++++|+..|++++..
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999998543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-09 Score=102.56 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.++.++++..|.++|..+|.+..+|..+|.+++.+|+|++|+..|++++ ++.|++.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~--------------------- 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENA--------------------- 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCH---------------------
Confidence 5678889999999999999999999999999999999999999999855 3333222
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhhhh
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC-CHLGL--MEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~-~~lG~--~eeAi~~l~~al~l~~~~~r~ 195 (580)
..++.+|.++ +..|+ .++|+..|++++++
T Consensus 108 -----------------------------------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------- 139 (198)
T PRK10370 108 -----------------------------------------ELYAALATVLYYQAGQHMTPQTREMIDKALAL------- 139 (198)
T ss_pred -----------------------------------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------
Confidence 2466778875 66677 48999999988876
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+|++..+..++ |..+++.|+|++|+.+|++++++.+|
T Consensus 140 -------------------------------dP~~~~al~~L------------A~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 140 -------------------------------DANEVTALMLL------------ASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred -------------------------------CCCChhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35555555554 88889999999999999999887543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-09 Score=98.85 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|++++.. .|.+..+++++|.++..+|++++|+..+++++.++|+++..++.+|.++..+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 99999999999999999999997 3457899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999888
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.7e-09 Score=103.39 Aligned_cols=205 Identities=15% Similarity=0.091 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
.|.+-..-|+ .+..++|+++|-..+..+|..-.++..+|..+...|..+.||.+-+..+ ..|+.+
T Consensus 38 ~Yv~GlNfLL----s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~----~spdlT------- 102 (389)
T COG2956 38 DYVKGLNFLL----SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL----ESPDLT------- 102 (389)
T ss_pred HHHhHHHHHh----hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh----cCCCCc-------
Confidence 4544444444 4567899999999999999999999999999999999999999877633 111111
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
..++ ..+.+.||+=|...|-+|.|...|..
T Consensus 103 -------------------------------------~~qr-------------~lAl~qL~~Dym~aGl~DRAE~~f~~ 132 (389)
T COG2956 103 -------------------------------------FEQR-------------LLALQQLGRDYMAAGLLDRAEDIFNQ 132 (389)
T ss_pred -------------------------------------hHHH-------------HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 0122 23567899999999999999999987
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.... |+. ..+...+ -++|-...+|++||
T Consensus 133 L~de---------------------------------------~efa~~AlqqL------------l~IYQ~treW~KAI 161 (389)
T COG2956 133 LVDE---------------------------------------GEFAEGALQQL------------LNIYQATREWEKAI 161 (389)
T ss_pred Hhcc---------------------------------------hhhhHHHHHHH------------HHHHHHhhHHHHHH
Confidence 5532 111 2233333 67888899999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+.-.+...+.+....-.-+..|+.++..+....+++.|+..+.+|++.||+++.|-..+|.++...|+|+.|+..|+.++
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 99999988743333344578899999999999999999999999999999999999999999999999999999999996
Q ss_pred HH
Q 008039 344 LL 345 (580)
Q Consensus 344 ~l 345 (580)
+-
T Consensus 242 eQ 243 (389)
T COG2956 242 EQ 243 (389)
T ss_pred Hh
Confidence 65
|
|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-10 Score=122.76 Aligned_cols=65 Identities=17% Similarity=0.398 Sum_probs=55.9
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++|+.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--------------------~~a~~~f~~i~~AYe-vLsd~~k 61 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--------------------KEAEEKFKLINEAYG-VLSDEKK 61 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------cHHHHHHHHHHHHHH-HhccHHH
Confidence 5899999999999999999999999999999997541 357889999999999 5777776
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 R~~YD~ 67 (369)
T PRK14288 62 RALYDR 67 (369)
T ss_pred HHHHHH
Confidence 655554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5e-08 Score=100.96 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
-+..++.++-.-...-|.+...+...|.|++..|++.+|+..|+++. -.+|.+-.+ . .+=+-||...
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~---~~dpy~i~~-------M---D~Ya~LL~~e 279 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL---CANPDNVEA-------M---DLYAVLLGQE 279 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh---hCChhhhhh-------H---HHHHHHHHhc
Confidence 35667778888888889999999999999999999999999888854 122211100 0 0011122211
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhccc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISL 200 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~ 200 (580)
. +.+++++.+-..+.. +..+...|++-|..+|...+++.|+.+-.++++++
T Consensus 280 g----------------~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~----------- 330 (564)
T KOG1174|consen 280 G----------------GCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE----------- 330 (564)
T ss_pred c----------------CHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------
Confidence 1 112222222211211 12233457777888899999999999888888662
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc
Q 008039 201 SDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF 280 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~ 280 (580)
|. ....++-+ |+.+...|+.++|+-+|..|+.+ .|.
T Consensus 331 ---------------------------~r--~~~alilK----------G~lL~~~~R~~~A~IaFR~Aq~L-----ap~ 366 (564)
T KOG1174|consen 331 ---------------------------PR--NHEALILK----------GRLLIALERHTQAVIAFRTAQML-----APY 366 (564)
T ss_pred ---------------------------cc--cchHHHhc----------cHHHHhccchHHHHHHHHHHHhc-----chh
Confidence 22 22222223 89999999999999999999987 455
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH------------------------------------HHHHHHhcCCCcHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIA------------------------------------DCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~------------------------------------~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.-.+|-.+-.||+..|++.+|+. .++++|.++|.+.+|...+|+
T Consensus 367 rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 367 RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAE 446 (564)
T ss_pred hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHH
Confidence 77788888888888877776554 466667788999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..-|.+++++..+++.+..
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh
Confidence 999999999999999999776
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-08 Score=112.12 Aligned_cols=253 Identities=13% Similarity=0.085 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.+...+.+|..+++ .|++++|+.++.++|.++|.++.+|..+|.+|-.+|+.++++...-.+- -++|.|++-
T Consensus 138 ~l~~ll~eAN~lfa---rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA---HL~p~d~e~-- 209 (895)
T KOG2076|consen 138 ELRQLLGEANNLFA---RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA---HLNPKDYEL-- 209 (895)
T ss_pred HHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH---hcCCCChHH--
Confidence 48889999999984 6999999999999999999999999999999999999999998655533 233433311
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhH-HHHHHHHHHhcCCHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR-YLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~LG~a~~~lG~~eeAi~ 180 (580)
|-.-+.+...- +.......|++ + .+..++++ |. ++.....|..+|+...|+.
T Consensus 210 --------W~~ladls~~~-------~~i~qA~~cy~------r---AI~~~p~n---~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 210 --------WKRLADLSEQL-------GNINQARYCYS------R---AIQANPSN---WELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred --------HHHHHHHHHhc-------ccHHHHHHHHH------H---HHhcCCcc---hHHHHHHHHHHHHhChHHHHHH
Confidence 11111111100 00001111111 1 12223332 33 2456788888999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-HHHHHHHH-----------
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-KLLLRRRT----------- 248 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-k~~~~~k~----------- 248 (580)
-|.+.+++.| +-|...+..+...+ +......+
T Consensus 263 ~f~~l~~~~p------------------------------------~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 263 TFLQLLQLDP------------------------------------PVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhhCC------------------------------------chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988887631 02444455544442 22222211
Q ss_pred ---------------HHHHHHHcCCHHHHHHHHHHHHh----------------------cc------------------
Q 008039 249 ---------------AAIAALDAGLYSEAIRHFSKIVD----------------------GR------------------ 273 (580)
Q Consensus 249 ---------------~G~~~~~~g~y~eAi~~y~~AL~----------------------~~------------------ 273 (580)
.+..+++...|+.|+.....-.. +.
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 12333445556666555443332 00
Q ss_pred -------------------CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCChh
Q 008039 274 -------------------RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 274 -------------------~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~~~ 333 (580)
..........+|+.++.++...|+|.+|+..+...+...+ ++.-.|+++|.||..+|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 0000223578999999999999999999999999988765 34678999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLL 345 (580)
Q Consensus 334 eAi~~~~~al~l 345 (580)
+|+..|++++.+
T Consensus 467 ~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 467 EAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHHhc
Confidence 999999999888
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.2e-09 Score=108.37 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=134.4
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
.+|+++.+|..+|.++...++++++...+.++.. ..+.+..
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------------------ 41 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQ---ALAARAT------------------------------------ 41 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHH---HhccCCC------------------------------------
Confidence 3799999999999999999999999887777442 2111110
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
.....+..|.+++..|++++|+..++++++..
T Consensus 42 -----------------------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------------------- 73 (355)
T cd05804 42 -----------------------ERERAHVEALSAWIAGDLPKALALLEQLLDDY------------------------- 73 (355)
T ss_pred -----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------------------
Confidence 01134567889999999999999999998763
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
|++...... +..++..|++..+...+.+++... ....+....++.++|.++..
T Consensus 74 -------------P~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 74 -------------PRDLLALKL-------------HLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred -------------CCcHHHHHH-------------hHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHH
Confidence 433322110 334445555555555555555432 22256677888899999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++++.+
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999999776
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.7e-10 Score=117.74 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=61.9
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
....||.+|||.+++++.+|+++||++||+|||||++..+ ..|...|++|+.||+ |||||
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~i-------------------eeat~~F~~i~aAYe-VLSdp 65 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRI-------------------EEATQQFQLIQAAYE-VLSDP 65 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccH-------------------HHHHHHHHHHHHHHH-HhcCh
Confidence 3567999999999999999999999999999999988765 578899999999999 68889
Q ss_pred hhHHHHHHHHH
Q 008039 474 MDEEAAEKRRK 484 (580)
Q Consensus 474 ~~~~~~~~~~~ 484 (580)
..+.=+..-|.
T Consensus 66 ~eR~wyd~hre 76 (508)
T KOG0717|consen 66 QERAWYDSHRE 76 (508)
T ss_pred HhhhhHHHHHH
Confidence 87666665553
|
|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3e-10 Score=120.73 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=54.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++. ..|++.|+.|++||+ +|+|+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---------------------~~a~~~F~~i~~Aye-vLsD~~ 60 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---------------------PDAHDKMVEINEAAD-VLLDKD 60 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------chHHHHHHHHHHHHH-HhcCHH
Confidence 3699999999999999999999999999999999753 357889999999999 577776
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 61 KR~~YD 66 (372)
T PRK14296 61 KRKQYD 66 (372)
T ss_pred Hhhhhh
Confidence 444444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8e-08 Score=104.01 Aligned_cols=214 Identities=11% Similarity=0.002 Sum_probs=159.6
Q ss_pred ccccchhh-hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWLSNRK-IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+...+. +....+..|...+ ..||+..|...+.++....|....++...|.++..+|+++.|...+.++.. .
T Consensus 74 ~~~~~r~~~k~~~~~~~glla~---~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~ 147 (409)
T TIGR00540 74 GWFSGRKRRKAQKQTEEALLKL---AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---L 147 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---h
Confidence 56443222 5556677776665 689999999999999999999999999999999999999999999999652 2
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|++. .-.....+.++...
T Consensus 148 ~p~~~-------------------------------------------------------------l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 148 AGNDN-------------------------------------------------------------ILVEIARTRILLAQ 166 (409)
T ss_pred CCcCc-------------------------------------------------------------hHHHHHHHHHHHHC
Confidence 12110 00123348889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
|+++.|+..++..++. .|++..+..++ |..
T Consensus 167 ~~~~~Al~~l~~l~~~--------------------------------------~P~~~~~l~ll------------~~~ 196 (409)
T TIGR00540 167 NELHAARHGVDKLLEM--------------------------------------APRHKEVLKLA------------EEA 196 (409)
T ss_pred CCHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHH------------HHH
Confidence 9999999999988765 26667776666 889
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP----SCIQALDTRALLLET 328 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP----~~~~A~~~ra~~~~~ 328 (580)
+...|+|++|+..+.+.++.. ..+.+....+.......++..+..++++..+..+....| +++..++..|..+..
T Consensus 197 ~~~~~d~~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 197 YIRSGAWQALDDIIDNMAKAG-LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999998852 111111112222223333455555666778888888888 589999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.|++++|+..++++++.
T Consensus 276 ~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKK 292 (409)
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999999999776
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.7e-08 Score=103.33 Aligned_cols=272 Identities=9% Similarity=-0.004 Sum_probs=160.5
Q ss_pred ccccchhh-hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWLSNRK-IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+...+. +..+++..|...+ ..|||..|...+.++-...+....++.+-|.+....|+++.|...|.++. +.
T Consensus 74 ~~~~~rr~~~~~~~~~~gl~a~---~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~---~~ 147 (398)
T PRK10747 74 GWFVGRKRRRARKQTEQALLKL---AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA---EL 147 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hc
Confidence 56554333 5566677776655 47899999877777666655545555555677688999999999888855 33
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|++.... .-..+.+.-..++ ..... ..+..+ ....+...+.+..++.+|...
T Consensus 148 ~~~~~~~~---------~l~~a~l~l~~g~----------------~~~Al-~~l~~~-~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 148 ADNDQLPV---------EITRVRIQLARNE----------------NHAAR-HGVDKL-LEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred CCcchHHH---------HHHHHHHHHHCCC----------------HHHHH-HHHHHH-HhcCCCCHHHHHHHHHHHHHH
Confidence 33322110 0000111110000 00000 111111 111233346778889999999
Q ss_pred CCHHHHHHHHHHHHHHHH---Hhhh---hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-H----
Q 008039 173 GLMEDAMVLLQTGKRLAT---AAFR---RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-K---- 241 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~---~~~r---~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-k---- 241 (580)
|++++|+..+.+..+... .... ...+.. ....... ..+.......++.+ +
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~----l~~~~~~---------------~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG----LMDQAMA---------------DQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----HHHHHHH---------------hcCHHHHHHHHHhCCHHHhC
Confidence 999999988887764321 0000 000000 0000000 00001111110000 0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
...-...-+..+...|++++|.....++++. .+ +..+..-.+. +..+++++++..+++.++.+|+++..++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-----~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-----DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-----CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 0111122388899999999999999999994 22 2232222232 34599999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++...++|++|...|++++++
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999877
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=109.66 Aligned_cols=171 Identities=18% Similarity=0.140 Sum_probs=136.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++.+|+..--..+.+++.+..++..+|.|+.+....+.|+..|++ .|++.|+...+.+
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~q---al~ldpdh~~sk~---------------- 241 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQ---ALRLDPDHQKSKS---------------- 241 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhh---hhccChhhhhHHh----------------
Confidence 468999999999999999999999999999999999999999999988 4466665543311
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.++ .+.. ...|-.-|.-.|+.|++.+|.+.|..++.++
T Consensus 242 --------------~~~------------------~~k~--le~~k~~gN~~fk~G~y~~A~E~Yteal~id-------- 279 (486)
T KOG0550|consen 242 --------------ASM------------------MPKK--LEVKKERGNDAFKNGNYRKAYECYTEALNID-------- 279 (486)
T ss_pred --------------Hhh------------------hHHH--HHHHHhhhhhHhhccchhHHHHHHHHhhcCC--------
Confidence 000 0011 1134456999999999999999999998763
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES--VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~--~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
|++.. +.-+.++ +.+..+.|+..+||..++.++.+
T Consensus 280 ------------------------------P~n~~~naklY~nr----------a~v~~rLgrl~eaisdc~~Al~i--- 316 (486)
T KOG0550|consen 280 ------------------------------PSNKKTNAKLYGNR----------ALVNIRLGRLREAISDCNEALKI--- 316 (486)
T ss_pred ------------------------------ccccchhHHHHHHh----------HhhhcccCCchhhhhhhhhhhhc---
Confidence 44333 2333344 88999999999999999999998
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
++....+|..+|.||+.+++|++|++|+++|+++..+
T Consensus 317 --D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 317 --DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4557899999999999999999999999999998766
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-10 Score=118.32 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=56.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vLsD~~ 66 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--------------------PAAEERFKAVSEAHD-VLSDPA 66 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHH-Hhcchh
Confidence 36999999999999999999999999999999997542 367889999999999 677777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 67 KR~~YD~ 73 (392)
T PRK14279 67 KRKEYDE 73 (392)
T ss_pred hhhHHHH
Confidence 6655554
|
|
| >smart00271 DnaJ DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=84.14 Aligned_cols=57 Identities=28% Similarity=0.454 Sum_probs=50.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.+||.+|||.++++..+|+++|+++++++|||++.+. ...+...|..|++||++|.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-------------------~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-------------------KEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------------------hHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999999999999999999998653 15778899999999997655
|
|
| >KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-10 Score=113.92 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=57.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
...||.+|||.++|+..||++|||++|++|||||++. +.++|+.|++||+ +++|+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----------------------~~ekfkei~~Aye-vLsd~e 58 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----------------------AGEKFKEISQAYE-VLSDPE 58 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----------------------HHHHHHHHHHHHH-HhcCHH
Confidence 3569999999999999999999999999999999865 4577999999999 688898
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
.++.+.+-..
T Consensus 59 kr~~yD~~g~ 68 (337)
T KOG0712|consen 59 KREIYDQYGE 68 (337)
T ss_pred HHHHHHhhhh
Confidence 7777776553
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=116.24 Aligned_cols=66 Identities=17% Similarity=0.362 Sum_probs=56.1
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +|+|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 61 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--------------------KESEEKFKEATEAYE-ILRDPK 61 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHH-HhccHH
Confidence 35899999999999999999999999999999997541 367889999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (372)
T PRK14286 62 KRQAYDQ 68 (372)
T ss_pred HHHHHHH
Confidence 5555553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.8e-09 Score=85.01 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIR-CLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg-~~~eAi~~~~~al~l 345 (580)
++.+|+++|.+++.+|+|++|+.+|+++|.++|+++.+|+++|.++..+| ++++|+.+|++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 57788999999999999999999999999999999999999999999998 799999999999887
|
... |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-08 Score=97.82 Aligned_cols=203 Identities=18% Similarity=0.217 Sum_probs=144.7
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
...+|..|++++..-.+.+|++...+.++|-||....+|.+|.++|++ .+.+.|
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQ---L~ql~P----------------------- 75 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQ---LGQLHP----------------------- 75 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhCh-----------------------
Confidence 456789999999999999999999999999999999999999999998 222222
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH----------HHHH
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ----------TGKR 187 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~----------~al~ 187 (580)
...++++| -++.++..+.+.+|+.... ++++
T Consensus 76 --------------------------------------~~~qYrlY-~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 76 --------------------------------------ELEQYRLY-QAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred --------------------------------------HHHHHHHH-HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 11122322 3677777778887776643 3444
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH---HHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI---KLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~---k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+..+ ..+..+| + ..+..+.... ..+......|-.+|+.|+|++|++
T Consensus 117 LqaA-----IkYse~D-l-------------------------~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 117 LQAA-----IKYSEGD-L-------------------------PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHHH-----Hhccccc-C-------------------------cchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 4322 1111111 1 1111111111 011122233889999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCc-------------------------
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EPSC------------------------- 315 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP~~------------------------- 315 (580)
.|+.|++. ..+++.+-+|++.|++..|+++.|++...+.|+- .|..
T Consensus 166 kFqaAlqv-----sGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 166 KFQAALQV-----SGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHhh-----cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999997 5668888999999999999999999998887753 3432
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++|+...+.++.+.++++.|.+.+..
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 67888889999999999998766543
|
|
| >KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-09 Score=113.65 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=61.5
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|+|++++++++|++|||++++-+||||+.+.. .|..|+++|..|++||| +++||
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-----------------~K~~AE~~F~~i~~AyE-VLsDp 68 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-----------------QKKAAEEKFQRIQRAYE-VLSDP 68 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-----------------HHHHHHHHHHHHHHHHH-HhcCh
Confidence 3558999999999999999999999999999999987644 56899999999999999 68889
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..++.+.
T Consensus 69 ~kRaIYD 75 (546)
T KOG0718|consen 69 QKRAIYD 75 (546)
T ss_pred HHHHHHH
Confidence 8777773
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=107.14 Aligned_cols=114 Identities=17% Similarity=0.101 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+...|..++..|++++|+.+|++++++. |++..+.. .+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--------------------------------------P~~~~a~~--~~-- 42 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--------------------------------------PNNAELYA--DR-- 42 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHH--HH--
Confidence 4556999999999999999999999773 44444433 33
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.+++..|+|++|+..|.++|.+ .|.+..+|+++|.+++.+|+|++|+..|++++.++|++..++..
T Consensus 43 --------a~~~~~~g~~~eAl~~~~~Al~l-----~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 43 --------AQANIKLGNFTEAVADANKAIEL-----DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998 45578999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 008039 322 RALLLETIR 330 (580)
Q Consensus 322 ra~~~~~lg 330 (580)
++.|...+.
T Consensus 110 l~~~~~kl~ 118 (356)
T PLN03088 110 IKECDEKIA 118 (356)
T ss_pred HHHHHHHHH
Confidence 988877663
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-08 Score=102.41 Aligned_cols=248 Identities=13% Similarity=0.097 Sum_probs=155.4
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
-++..|. ..||+..-+.+|.+||++.-.+- .+|..+|++|++++.|++|++.-..=|-.-+.-++.-|-.-|+
T Consensus 22 lEGERLc---k~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKss 98 (639)
T KOG1130|consen 22 LEGERLC---KMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSS 98 (639)
T ss_pred HHHHHHH---hccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccc
Confidence 3445565 68999999999999999887654 5677899999999999999986554331111111111100000
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCC-CCcccc---cc-hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRD-PSFKCF---SV-SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~---~~-~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
. .|. +.+.-.+..+ ...+|| ++ .+|..+|..+ .++|+||.+|...|+
T Consensus 99 ----------g-NLG---NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~----------RAlYNlgnvYhakGk~~g~ 154 (639)
T KOG1130|consen 99 ----------G-NLG---NTLKVKGAFDEALTCCFRHLDFARELGDRVLES----------RALYNLGNVYHAKGKCTGL 154 (639)
T ss_pred ----------c-ccc---chhhhhcccchHHHHHHHHhHHHHHHhHHHhhh----------HHHhhhhhhhhhcccccCC
Confidence 0 000 0000001122 223443 33 2344455544 579999999998876
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 175 ----------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 175 ----------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
++.|+++|..-+++....-.+. -...+.
T Consensus 155 ~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~--------------------------------aqGRa~---- 198 (639)
T KOG1130|consen 155 EAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRL--------------------------------AQGRAY---- 198 (639)
T ss_pred CChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------------------------------hhcchh----
Confidence 2345555555444432110000 000010
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EP 313 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP 313 (580)
-..||.+|-.|+|+.||.+-+.-|.+.. -.+..-.-.++.|+|.||.-+|+|+.|+++|.+++.+ ..
T Consensus 199 --------GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 199 --------GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred --------cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 1128889999999999999888777621 0111123468999999999999999999999987655 22
Q ss_pred C--cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 S--CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ~--~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
. -....|.+|..|.-+.+|..||.++++-+.+.
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24567899999999999999999999987773
|
|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-09 Score=115.39 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=55.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. +..|++.|++|++||+ +|+|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-------------------~~~a~~~f~~i~~Ay~-vL~d~~ 62 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN-------------------RKEAEQKFKEIQEAYE-VLSDPQ 62 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc-------------------hhHHHHHHHHHHHHHH-HhcChh
Confidence 36999999999999999999999999999999997541 1357899999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 63 kR~~YD~ 69 (369)
T PRK14282 63 KRAMYDR 69 (369)
T ss_pred hHHHHhh
Confidence 5555543
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-09 Score=115.00 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=55.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||++.. ..+++.|+.|++||+ +++|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~~~~~f~~i~~Ay~-~L~d~~ 60 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---------------------PDAEDKFKEVKEAYD-TLSDPQ 60 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHH-HhCcHh
Confidence 3589999999999999999999999999999999753 357789999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 61 kR~~YD~ 67 (371)
T PRK14287 61 KKAHYDQ 67 (371)
T ss_pred HHHHHHh
Confidence 6666554
|
|
| >KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=108.99 Aligned_cols=69 Identities=29% Similarity=0.442 Sum_probs=60.5
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||.+||+..+++..+|+++||..||++||||+++.+ .|.+.|..+.+||+ +++|+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP--------------------~A~ekFq~L~eAy~-VL~D~~ 62 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP--------------------QAAEKFQELSEAYE-VLSDEE 62 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh--------------------HHHHHHHHHHHHHH-HhcCHH
Confidence 568999999999999999999999999999999999865 58999999999999 577787
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
-+.++.+-++
T Consensus 63 ~R~~YDk~~k 72 (296)
T KOG0691|consen 63 SRAAYDKLRK 72 (296)
T ss_pred HHHHHHHHhh
Confidence 6777765544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=89.20 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
...+.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------p~~~~~~~~l-- 57 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD--------------------------------------PYNSRYWLGL-- 57 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH--
Confidence 457789999999999999999999988652 4444444333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.. .|.+...++++|.++..+|++++|+..++++++++|++....
T Consensus 58 ----------a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 58 ----------AACCQMLKEYEEAIDAYALAAAL-----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999997 355789999999999999999999999999999999887744
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-09 Score=83.38 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=50.5
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||.+|||.++++..+|+++|++++.++|||+..... ..++..|..|++||++|.+ +.
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-------------------~~~~~~~~~i~~Ay~~L~~-~~ 58 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-------------------AEAEEKFARINEAYEILSD-PE 58 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-------------------HHHHHHHHHHHHHHHHHHS-HH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-------------------hhhhHHHHHHHHHHHHhCC-HH
Confidence 6899999999999999999999999999999976632 3678999999999996544 44
|
Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A .... |
| >cd06257 DnaJ DnaJ domain or J-domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=81.06 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=48.3
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
+||++|||..+++.++|+++|+++++++|||+..+. ..+...|..|++||++|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--------------------~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--------------------PEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHHhc
Confidence 699999999999999999999999999999997652 356788999999999764
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.2e-08 Score=111.41 Aligned_cols=178 Identities=14% Similarity=0.026 Sum_probs=142.3
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCC
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDS 127 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 127 (580)
++=-.+-+.|.++...+..|.+.+..|+|.+|++.|++++ +..|.+...
T Consensus 22 ~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL---~~~P~~~~a---------------------------- 70 (822)
T PRK14574 22 LFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEES---KAGPLQSGQ---------------------------- 70 (822)
T ss_pred HHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCccchhh----------------------------
Confidence 4444566889999999999999999999999999999955 333332200
Q ss_pred CCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCC
Q 008039 128 LGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPF 207 (580)
Q Consensus 128 ~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~ 207 (580)
.+-+..++...|+.++|+.++++++
T Consensus 71 ----------------------------------v~dll~l~~~~G~~~~A~~~~eka~--------------------- 95 (822)
T PRK14574 71 ----------------------------------VDDWLQIAGWAGRDQEVIDVYERYQ--------------------- 95 (822)
T ss_pred ----------------------------------HHHHHHHHHHcCCcHHHHHHHHHhc---------------------
Confidence 1134566777899999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHH
Q 008039 208 SKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMH 287 (580)
Q Consensus 208 ~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~n 287 (580)
+|++.....++.. |..+...|+|++|++.|+++++. .|.++.++..
T Consensus 96 -------------------~p~n~~~~~llal----------A~ly~~~gdyd~Aiely~kaL~~-----dP~n~~~l~g 141 (822)
T PRK14574 96 -------------------SSMNISSRGLASA----------ARAYRNEKRWDQALALWQSSLKK-----DPTNPDLISG 141 (822)
T ss_pred -------------------cCCCCCHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHH
Confidence 1334444444433 77889999999999999999997 3447788889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 288 RAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 288 ra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++.++...+++++|+..+.+++..+|.+... ..++.++..++++.+|+..|++++++.
T Consensus 142 La~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 142 MIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999996665 667778877888888999999998883
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=4e-08 Score=92.81 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE- 327 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~- 327 (580)
.|..++..|+|++|+..|.+++.+. +. ....+.+|+++|.++..+|++++|+..|.+++.++|.+..++..+|.++.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~-~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLE-ID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc-cc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3999999999999999999999873 22 22356799999999999999999999999999999999999999999999
Q ss_pred ------hcCChhHHHHHHHHHHHHHHHhhhcC
Q 008039 328 ------TIRCLPDCLHDLEHLKLLYNAILRDR 353 (580)
Q Consensus 328 ------~lg~~~eAi~~~~~al~l~~~~l~~~ 353 (580)
.+|++++|+.+|.+++.++...+..+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999988876665444
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-09 Score=115.59 Aligned_cols=63 Identities=25% Similarity=0.505 Sum_probs=53.4
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||++|||.++++..+|++|||++|++|||||++. .+.|+.|++||+ +++|+
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------------------------~e~F~~i~~AYe-vLsD~ 80 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------------------------PEKFKEISRAYE-VLSDP 80 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------------------------HHHHHHHHHHHH-HhccH
Confidence 35699999999999999999999999999999999632 257999999999 57777
Q ss_pred hhHHHHHH
Q 008039 474 MDEEAAEK 481 (580)
Q Consensus 474 ~~~~~~~~ 481 (580)
..+..+.+
T Consensus 81 ~kR~~YD~ 88 (421)
T PTZ00037 81 EKRKIYDE 88 (421)
T ss_pred HHHHHHhh
Confidence 75555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=5e-07 Score=99.74 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+++.+|+.|-.+|++++|+.+.++||...|+.++.|+.+|.+|...|++.+|...++.+..|.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 35678899999999999999999999999999999999999999999999999999999998773
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-09 Score=114.28 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=56.1
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||++|++||||+++. ..|++.|+.|++||+ +++|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~-~Lsd~~ 61 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---------------------EGAEEKFKEISEAYA-VLSDDE 61 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHH-HhchhH
Confidence 4699999999999999999999999999999999753 357889999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (378)
T PRK14283 62 KRQRYDQ 68 (378)
T ss_pred HHHHHhh
Confidence 6655554
|
|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-09 Score=109.46 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=53.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||++ ++++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~ 60 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---------------------PGAEEKFKEINEAYTV-LSDPE 60 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHH-hcCHH
Confidence 3689999999999999999999999999999999753 3567899999999995 66666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 61 kr~~yD 66 (291)
T PRK14299 61 KRRIYD 66 (291)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=113.21 Aligned_cols=65 Identities=23% Similarity=0.464 Sum_probs=54.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||+++.. ..|++.|++|++||+ +++|+..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~k 61 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--------------------KEAESIFKEATEAYE-VLIDDNK 61 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------HHHHHHHHHHHHHHH-HHcCcch
Confidence 5899999999999999999999999999999997542 357889999999999 5666664
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 r~~yd~ 67 (365)
T PRK14285 62 RAQYDR 67 (365)
T ss_pred hHHHHh
Confidence 544443
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.9e-09 Score=113.88 Aligned_cols=66 Identities=20% Similarity=0.366 Sum_probs=55.8
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||+++++||||++... ..|++.|+.|++||+ +++|+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 66 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--------------------AKAEERFKEISEAYD-VLSDEK 66 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hhHHHHHHHHHHHHH-HHCchh
Confidence 35999999999999999999999999999999997542 357889999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 67 ~r~~yD~ 73 (389)
T PRK14295 67 KRKEYDE 73 (389)
T ss_pred hHHHHHH
Confidence 5555544
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-09 Score=114.17 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=55.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++. ..|++.|++|++||+ +++|+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~ 60 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE---------------------PGAEEKYKEVQEAYE-TLSDPQ 60 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHH-HhcCHh
Confidence 3599999999999999999999999999999999764 246788999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 61 kR~~YD~ 67 (380)
T PRK14276 61 KRAAYDQ 67 (380)
T ss_pred hhhhHhh
Confidence 5555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=92.56 Aligned_cols=177 Identities=15% Similarity=0.067 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
...++..+-+....+|.+..+ .+.+..+...|+-++.+....+.. +..+.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~----------------------------~~~~~- 98 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA----------------------------IAYPK- 98 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh----------------------------ccCcc-
Confidence 344888889999999999999 999999999999998887666522 00000
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
+ ......+|...+..|++..|+..++++.++.
T Consensus 99 ---------d---------------------------~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------------ 130 (257)
T COG5010 99 ---------D---------------------------RELLAAQGKNQIRNGNFGEAVSVLRKAARLA------------ 130 (257)
T ss_pred ---------c---------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHhccC------------
Confidence 0 0112237999999999999999999998763
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
|.+..+...+ |.+|-+.|++++|-..|.+++++ .+..
T Consensus 131 --------------------------p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L-----~~~~ 167 (257)
T COG5010 131 --------------------------PTDWEAWNLL------------GAALDQLGRFDEARRAYRQALEL-----APNE 167 (257)
T ss_pred --------------------------CCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHh-----ccCC
Confidence 5555555555 99999999999999999999998 4557
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+.++.|+|..++-.|+++.|...+..+...-+.+.....+++.+....|++++|...-
T Consensus 168 p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 168 PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8899999999999999999999999999988889999999999999999999996543
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-09 Score=113.41 Aligned_cols=65 Identities=23% Similarity=0.454 Sum_probs=55.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++. ..+++.|++|++||+ +|+|+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~-vL~d~~ 61 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---------------------PDAEEKFKEISEAYA-VLSDAE 61 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---------------------hhHHHHHHHHHHHHH-HhcchH
Confidence 3599999999999999999999999999999999753 356789999999999 577777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kR~~YD~ 68 (377)
T PRK14298 62 KRAQYDR 68 (377)
T ss_pred hhhhhhh
Confidence 5555543
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.4e-09 Score=114.13 Aligned_cols=63 Identities=27% Similarity=0.418 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||++|++||||+++. ..|++.|+.|++||+ +++|+..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~~ 60 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---------------------EEAQEKFKEISVAYE-VLSDPEK 60 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---------------------HHHHHHHHHHHHHHH-Hhchhhh
Confidence 589999999999999999999999999999999753 357889999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 r~~YD 65 (378)
T PRK14278 61 RRIVD 65 (378)
T ss_pred hhhhh
Confidence 44444
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-09 Score=113.33 Aligned_cols=65 Identities=22% Similarity=0.403 Sum_probs=55.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++. ..+++.|+.|++||+ +++|+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~-vLsd~~ 59 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---------------------PEAEEKFKEINEAYQ-VLSDPE 59 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHH-HhcCHH
Confidence 3699999999999999999999999999999999764 256788999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 60 kR~~YD~ 66 (382)
T PRK14291 60 KRKLYDQ 66 (382)
T ss_pred HHHHHhh
Confidence 5555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.7e-09 Score=86.46 Aligned_cols=84 Identities=24% Similarity=0.279 Sum_probs=73.6
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|+.|+..|.+++... |. .+ +...++++|.||+.+|+|++|+..+++ +..+|.+...++.+|.++..+|+|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~-~~-~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELD-PT-NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHH-CG-TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CCccHHHHHHHHHHHHHHC-CC-Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 3689999999999999973 32 12 677888899999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 335 CLHDLEHL 342 (580)
Q Consensus 335 Ai~~~~~a 342 (580)
|+..|+++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-09 Score=112.85 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=55.6
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +++|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 62 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--------------------KEAEQKFKEINEAYE-ILSDPQ 62 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHH-HhCCHH
Confidence 35999999999999999999999999999999997642 357889999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 63 kr~~yD~ 69 (386)
T PRK14277 63 KRAQYDQ 69 (386)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-09 Score=111.67 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=55.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..+|++|||+++++||||+++.. ..+++.|+.|++||+ +++|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------------------~~~~~~f~~~~~Ay~-vL~d~~ 61 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--------------------KEAEELFKEAAEAYE-VLSDPK 61 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------hHHHHHHHHHHHHHH-HhccHH
Confidence 46999999999999999999999999999999997542 356789999999999 567777
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 ~r~~yD~ 68 (366)
T PRK14294 62 KRGIYDQ 68 (366)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=81.67 Aligned_cols=62 Identities=32% Similarity=0.440 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-RIAESIADCNKTLALEP 313 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~~Al~ldP 313 (580)
...|..++..|+|++|+..|+++|++ .|.++.+|+++|.|+..+| ++.+|+.+++++|+++|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34499999999999999999999998 4558999999999999999 79999999999999998
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-07 Score=98.68 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=139.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|+|++|+...++.|.+.|++..++..+--|++++++|++|+.+.++... +.
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~-------------------- 76 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LL-------------------- 76 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hh--------------------
Confidence 679999999999999999999999999999999999999999976555210 00
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
..+ + -.|..+-|.|++++.++|+..++.+
T Consensus 77 ~~~------------~---------------------------~~fEKAYc~Yrlnk~Dealk~~~~~------------ 105 (652)
T KOG2376|consen 77 VIN------------S---------------------------FFFEKAYCEYRLNKLDEALKTLKGL------------ 105 (652)
T ss_pred hcc------------h---------------------------hhHHHHHHHHHcccHHHHHHHHhcc------------
Confidence 000 0 0134556788899999998877721
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR---- 273 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~---- 273 (580)
++++.....+. |..+|+.|+|++|+..|...++-.
T Consensus 106 -----------------------------~~~~~~ll~L~------------AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 106 -----------------------------DRLDDKLLELR------------AQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred -----------------------------cccchHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 13333333333 778889999999999988775521
Q ss_pred ----------------------CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCc--------H
Q 008039 274 ----------------------RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-------EPSC--------I 316 (580)
Q Consensus 274 ----------------------~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-------dP~~--------~ 316 (580)
-|.........+||.+.++...|+|.+|++.+.+|+.+ +..+ .
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 02212236788999999999999999999999988433 1111 2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-....++-++..+|+-.+|...|...+..
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 35678899999999999999999988765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-08 Score=102.28 Aligned_cols=154 Identities=19% Similarity=0.116 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 38 EHSEIASALSLLDAALALS--PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~--P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
..+++..+...++++.... |.++.+|..+|.++...|++++|+.+|++++ +..|++.
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~------------------ 180 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL---ELDPDDP------------------ 180 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH---HH-TT-H------------------
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH------------------
Confidence 4588999999999987766 7888999999999999999999999999965 4444322
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.....++.++..+|+.+++...+....+..+
T Consensus 181 --------------------------------------------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~----- 211 (280)
T PF13429_consen 181 --------------------------------------------DARNALAWLLIDMGDYDEAREALKRLLKAAP----- 211 (280)
T ss_dssp --------------------------------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-----
T ss_pred --------------------------------------------HHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-----
Confidence 1344567888999999998888887665521
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
++......+ |..++..|++++|+..|.+++..
T Consensus 212 ---------------------------------~~~~~~~~l------------a~~~~~lg~~~~Al~~~~~~~~~--- 243 (280)
T PF13429_consen 212 ---------------------------------DDPDLWDAL------------AAAYLQLGRYEEALEYLEKALKL--- 243 (280)
T ss_dssp ---------------------------------TSCCHCHHH------------HHHHHHHT-HHHHHHHHHHHHHH---
T ss_pred ---------------------------------CHHHHHHHH------------HHHhccccccccccccccccccc---
Confidence 111222222 88999999999999999999996
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.|.++.++.+.|.++...|++++|+....+++..
T Consensus 244 --~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 --NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --STT-HHHHHHHHHHHT------------------
T ss_pred --cccccccccccccccccccccccccccccccccc
Confidence 4558899999999999999999999999888753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=97.71 Aligned_cols=187 Identities=16% Similarity=0.090 Sum_probs=137.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
...++..|+.+-.++|.++|++..++.++|++|+.++|.++|+-.|+.++ .++|
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap----------------------- 365 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAP----------------------- 365 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH---hcch-----------------------
Confidence 56899999999999999999999999999999999999999999999865 2221
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.+ ...|-.|-.+|...|.+.+|+..-..+.+.-++
T Consensus 366 --~r-------------------------------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~------ 400 (564)
T KOG1174|consen 366 --YR-------------------------------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQN------ 400 (564)
T ss_pred --hh-------------------------------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc------
Confidence 10 113556678899999999999887777665321
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA-IAA-LDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G-~~~-~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+.....++ | .++ +.-.--++|-..|+++|.+
T Consensus 401 --------------------------------sA~~LtL~------------g~~V~~~dp~~rEKAKkf~ek~L~~--- 433 (564)
T KOG1174|consen 401 --------------------------------SARSLTLF------------GTLVLFPDPRMREKAKKFAEKSLKI--- 433 (564)
T ss_pred --------------------------------chhhhhhh------------cceeeccCchhHHHHHHHHHhhhcc---
Confidence 11111111 1 111 1112236677778888886
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....+-..++..+..-|++.++|..+++.|...|++ ..+..+|.++...+.+.+|+..|..|+.+
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34456667777888888888888888888888776654 45677888888888888888888888666
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-09 Score=111.94 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=55.6
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||+++.. ..|++.|+.|++||+ +|+++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~ 61 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--------------------PEAEQKFKEAAEAYE-VLRDAE 61 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--------------------hHHHHHHHHHHHHHH-Hhcchh
Confidence 36999999999999999999999999999999997542 357889999999999 567776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 62 kr~~yD~ 68 (373)
T PRK14301 62 KRARYDR 68 (373)
T ss_pred hhhhhhh
Confidence 5555543
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.9e-09 Score=111.78 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=54.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++. ..|++.|+.|++||+ +++++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~---------------------~~a~~~f~~i~~Ay~-vL~d~~k 61 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE---------------------EGADEKFKEISEAYE-VLSDDQK 61 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHH-HhccHhH
Confidence 589999999999999999999999999999999754 256789999999999 5667765
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 62 r~~yD~ 67 (376)
T PRK14280 62 RAQYDQ 67 (376)
T ss_pred HHHHHh
Confidence 555543
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-09 Score=112.02 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=53.4
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDE 476 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~ 476 (580)
|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||++ ++|+..+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~v-L~d~~kR 60 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--------------------AEAEKRFKEVSEAYEV-LSDAQKR 60 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------hHHHHHHHHHHHHHHH-hcCHHHH
Confidence 799999999999999999999999999999997642 3578899999999995 5666644
Q ss_pred HHHH
Q 008039 477 EAAE 480 (580)
Q Consensus 477 ~~~~ 480 (580)
..+.
T Consensus 61 ~~YD 64 (391)
T PRK14284 61 ESYD 64 (391)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=97.24 Aligned_cols=221 Identities=16% Similarity=0.087 Sum_probs=138.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..++..|...-+.|+.++-.++.++.++|.+-+..|.++.|++.|+.++.. |.+-. +. |+.
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~------ea-------lfn 529 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCT------EA-------LFN 529 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHH------HH-------HHH
Confidence 457888888888888888888888888888888888888888888886621 11000 00 000
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+-- ....+..+..+-||- ++.+.|.. ....++.++.+|-.+.+...||++|-++..+
T Consensus 530 iglt-~e~~~~ldeald~f~------klh~il~n-----n~evl~qianiye~led~aqaie~~~q~~sl---------- 587 (840)
T KOG2003|consen 530 IGLT-AEALGNLDEALDCFL------KLHAILLN-----NAEVLVQIANIYELLEDPAQAIELLMQANSL---------- 587 (840)
T ss_pred hccc-HHHhcCHHHHHHHHH------HHHHHHHh-----hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----------
Confidence 0000 000000001111110 01111100 0112333444444444444444444443322
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
.|....+..-+ |..|-+.|+-.+|.++|-....+ .
T Consensus 588 ----------------------------ip~dp~ilskl------------~dlydqegdksqafq~~ydsyry-----f 622 (840)
T KOG2003|consen 588 ----------------------------IPNDPAILSKL------------ADLYDQEGDKSQAFQCHYDSYRY-----F 622 (840)
T ss_pred ----------------------------CCCCHHHHHHH------------HHHhhcccchhhhhhhhhhcccc-----c
Confidence 13222222222 77777888888888888777776 5
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|-+....-.+|.-|+...-++.||.++++|--+.|+..+-....+.|+...|+|..|...|+....-
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6677777888999999999999999999999999999999999999999999999999999887544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.4e-08 Score=84.91 Aligned_cols=96 Identities=29% Similarity=0.250 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALD 320 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~ 320 (580)
.+.-+|..+-..|+.+.|++.|.++|.+ -|.++.+|+||++++.-.|+.++|++|+++|+++.-+- -.+|.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 3444599999999999999999999998 45689999999999999999999999999999996544 35799
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.||.+|..+|+-+.|..||+.+.+|
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHh
Confidence 9999999999999999999999887
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=106.16 Aligned_cols=236 Identities=14% Similarity=0.085 Sum_probs=155.9
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
+...+.+...+..+. ..|++++|+..++.+++.+|....+|+..|.++++.+++.++... .++ ..-+.+.
T Consensus 28 p~n~~a~~~Li~~~~---~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---~~~~~~~-- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYK---SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---DSFSQNL-- 97 (906)
T ss_pred cchHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---hhccccc--
Confidence 334444444444443 689999999999999999999999999999999999999988865 433 1111111
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
+ .--++++-+.++.- .....+++.||.||-.+|+.++|.
T Consensus 98 -------------------------------~----~~~ve~~~~~i~~~------~~~k~Al~~LA~~Ydk~g~~~ka~ 136 (906)
T PRK14720 98 -------------------------------K----WAIVEHICDKILLY------GENKLALRTLAEAYAKLNENKKLK 136 (906)
T ss_pred -------------------------------c----hhHHHHHHHHHHhh------hhhhHHHHHHHHHHHHcCChHHHH
Confidence 0 00122222222221 122347899999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH------HHHHHH-HHHHHH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI------KLLLRR-RTAAIA 252 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~------k~~~~~-k~~G~~ 252 (580)
..|+++++++ |++..+...+... .++..+ +.....
T Consensus 137 ~~yer~L~~D--------------------------------------~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 137 GVWERLVKAD--------------------------------------RDNPEIVKKLATSYEEEDKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhcC--------------------------------------cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999873 4444444433211 111111 112234
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcc----------------cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGF----------------LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~----------------~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
++..++|.++.+.+.+.+.. ++..... ...++.-+=.+|..+++|++++..+..+|+++|++.
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~-~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHY-NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred HHhhhcchHHHHHHHHHHhc-CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 55567777777777777775 2321111 122333333889999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--------------------CChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETI--------------------RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~l--------------------g~~~eAi~~~~~al~l 345 (580)
+|++.++.+|... ..+..|+.+|++.+.+
T Consensus 258 ~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f 306 (906)
T PRK14720 258 KAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVF 306 (906)
T ss_pred hhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeee
Confidence 9999999998731 2345666666666555
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.2e-09 Score=110.07 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=54.2
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|+.|++||+ +++++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-~L~d~~ 61 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--------------------KEAEEKFKEIKEAYE-VLSDPQ 61 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------------------HHHHHHHHHHHHHHH-Hhcchh
Confidence 46999999999999999999999999999999997542 357889999999999 566666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 62 ~r~~yd 67 (371)
T PRK10767 62 KRAAYD 67 (371)
T ss_pred hhhHhh
Confidence 444443
|
|
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-09 Score=111.42 Aligned_cols=64 Identities=27% Similarity=0.436 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++.. ..|++.|+.|++||+ +++++..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~~ 61 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--------------------KEAEEHFKEVNEAYE-VLSNDDK 61 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--------------------hHHHHHHHHHHHHHH-Hhhhhhh
Confidence 5899999999999999999999999999999997542 357789999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 62 r~~yD 66 (397)
T PRK14281 62 RRRYD 66 (397)
T ss_pred hhhhh
Confidence 44444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-08 Score=89.21 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
.+.++.++..|-.++ ..|++++|..+|.-+..++|.+..+|+++|.|+-.+|+|++||++|..++ .++|+|+
T Consensus 32 ~~~l~~lY~~A~~ly---~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp-- 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLM---EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAP-- 103 (157)
T ss_pred HHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCc--
Confidence 456777777887777 78999999999999999999999999999999999999999999999965 3334333
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
+.++++|.|++.+|+.+.|.
T Consensus 104 ------------------------------------------------------------~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 104 ------------------------------------------------------------QAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred ------------------------------------------------------------hHHHHHHHHHHHcCCHHHHH
Confidence 36889999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 180 VLLQTGKRLA 189 (580)
Q Consensus 180 ~~l~~al~l~ 189 (580)
..|+.++.+.
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 9999999773
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-09 Score=111.14 Aligned_cols=64 Identities=27% Similarity=0.490 Sum_probs=54.4
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||+++.. ..|++.|+.|++||+ +++|+..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------------------~~a~~~f~~i~~Ay~-vL~d~~~ 62 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--------------------KEAEEKFKEINEAYQ-VLSDPQK 62 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHH-HhcCHhh
Confidence 5899999999999999999999999999999997542 357889999999999 5666764
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 63 r~~yD 67 (380)
T PRK14297 63 KAQYD 67 (380)
T ss_pred hCchh
Confidence 44444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=89.67 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=80.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+...|+|++|+.+|.+++.+. +. .+....+++++|.++..+|++++|+..+.+++.++|++..++..+|.++..+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 119 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLE-ED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR 119 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh-hc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999863 22 2234679999999999999999999999999999999999999999999987
Q ss_pred CC-------hhHHHHHHHHHHHHHH
Q 008039 330 RC-------LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 330 g~-------~~eAi~~~~~al~l~~ 347 (580)
|+ ++.|+..|+++++.+.
T Consensus 120 g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 120 GEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred CChHhHhhCHHHHHHHHHHHHHHHH
Confidence 76 4455555555555443
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-09 Score=110.85 Aligned_cols=97 Identities=24% Similarity=0.301 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
...+.+++.+++.+.|+.|+..|++||++ +|.++.++.||+.++++.++|..|+.|+.+||+++|.+.++|+++|
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~l-----dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIEL-----DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhc-----CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeecc
Confidence 44567799999999999999999999998 4458889999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++..++.|.+|+.+|+....+
T Consensus 80 ~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 80 TAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred HHHHhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999877
|
|
| >KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.8e-09 Score=100.95 Aligned_cols=66 Identities=21% Similarity=0.423 Sum_probs=56.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..++|.+||+++++++++|+|+||++++++|||+++..+ .+..+|+.|++||+ |++|+.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P--------------------~~~dkf~eIN~Ay~-ILsD~~ 88 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNP--------------------EATDKFKEINTAYA-ILSDPT 88 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCc--------------------hhHHHHHHHHHHHH-HhcChh
Confidence 568999999999999999999999999999999998753 56789999999999 677776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.|..+.+
T Consensus 89 kR~~YD~ 95 (279)
T KOG0716|consen 89 KRNVYDE 95 (279)
T ss_pred hhhhHHH
Confidence 5555543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=83.45 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..+++.|+|++|+..|.+++... |. .+....+++.+|.++...|++++|+..|..++..+|++ ..+++.+|.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY-PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34999999999999999999999862 32 34457889999999999999999999999999999885 678999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 999999999999999999887
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.8e-08 Score=78.49 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
..|..++..|+|.+|+..|.+++... |....+++++|.++...|++++|+..|.+++.+.|.+..+++.+|.++.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 34889999999999999999999972 3355889999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 328 ~lg~~~eAi~~~~~al~l 345 (580)
..|++++|...+++++++
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999998665
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=97.62 Aligned_cols=89 Identities=11% Similarity=-0.038 Sum_probs=59.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+++|--..+..+||+.|.++..+ .|..+.++..+|..|-+-|+-..|..++-...+.-|.+.+..-.+|.-|...
T Consensus 565 aniye~led~aqaie~~~q~~sl-----ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-----IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh
Confidence 66666666666666666666665 3345666666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
.-++.|+.+|+++.
T Consensus 640 qf~ekai~y~ekaa 653 (840)
T KOG2003|consen 640 QFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHHHHHHH
Confidence 66677777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-06 Score=87.14 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHH---HHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELAL---ELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~---~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....++..|..++ ..|+|.+|+..|++++...|.++.+. ..+|.+++.+++|++|+..+++++ +..|+++.
T Consensus 31 ~~~~~Y~~A~~~~---~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi---~~~P~~~~ 104 (243)
T PRK10866 31 PPSEIYATAQQKL---QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI---RLNPTHPN 104 (243)
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCcCCCc
Confidence 5566778888887 68999999999999999999998665 789999999999999999999976 34443331
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
. -++++.+|.+++.++.
T Consensus 105 ~-----------------------------------------------------------~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 105 I-----------------------------------------------------------DYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred h-----------------------------------------------------------HHHHHHHHHhhhhcchhhhh
Confidence 1 2467888887655541
Q ss_pred --------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH---HHH
Q 008039 175 --------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS---QLL 237 (580)
Q Consensus 175 --------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~---~ll 237 (580)
..+|+..|++.++.- |++.-.. ..+
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~y--------------------------------------P~S~ya~~A~~rl 167 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRGY--------------------------------------PNSQYTTDATKRL 167 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHHC--------------------------------------cCChhHHHHHHHH
Confidence 245667777766542 3333322 222
Q ss_pred HHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 238 SHIKLLL--RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 238 ~~~k~~~--~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
..++..+ +...-|.-+++.|.|..|+.-++.+|+- =|. .+....+++.+..+|..+|..++|....
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPD-TQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 2222222 2223466667777777777777777763 122 3445666666777777777766665543
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=108.08 Aligned_cols=65 Identities=22% Similarity=0.399 Sum_probs=54.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||+++++||||+++... ..|++.|+.|++||+ +++|+..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------------------~~a~~~f~~i~~Ay~-~L~d~~~ 62 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNK-------------------AEAEEKFKEISEAYE-VLSDPQK 62 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch-------------------hHHHHHHHHHHHHHH-HhcChhh
Confidence 58999999999999999999999999999999975421 367899999999999 5666664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 63 r~~yd 67 (365)
T PRK14290 63 RRQYD 67 (365)
T ss_pred hhhhc
Confidence 44444
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=105.58 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=53.5
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..++..|+.|++||++ ++++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~~~~k 61 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE---------------------PDAEARFKEVAEAWEV-LSDEQR 61 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-hhhHHH
Confidence 589999999999999999999999999999999643 2578899999999995 566664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 62 r~~yD 66 (306)
T PRK10266 62 RAEYD 66 (306)
T ss_pred HHHHH
Confidence 44444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-07 Score=86.72 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=85.0
Q ss_pred hccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 008039 151 CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES 230 (580)
Q Consensus 151 ~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~ 230 (580)
..+......+.++.+|..+...|++++|+.+|++++.+.+. +.
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------------------------------~~- 69 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED------------------------------------PN- 69 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc------------------------------------cc-
Confidence 33444556778899999999999999999999999876310 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-------------
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR------------- 297 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~------------- 297 (580)
.....++.. |..+++.|+|++|+..|.+++.+ .|.....+.++|.++..+|+
T Consensus 70 ~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 70 DRSYILYNM----------GIIYASNGEHDKALEYYHQALEL-----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred hHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 112223333 99999999999999999999997 34578889999999999998
Q ss_pred -hHHHHHHHHHHHhcCCCc
Q 008039 298 -IAESIADCNKTLALEPSC 315 (580)
Q Consensus 298 -~~eAl~~~~~Al~ldP~~ 315 (580)
+.+|+..+.+++.++|++
T Consensus 135 ~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 135 LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHhhCchh
Confidence 455566666666666654
|
|
| >KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-08 Score=96.63 Aligned_cols=70 Identities=26% Similarity=0.469 Sum_probs=57.5
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+.|.+|||.+++++.+|++||++++|+||||++. ++....+...|+.++++|. |++|-
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~------------------eed~~ea~~kFq~l~k~y~-iLsDe 72 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH------------------EEDKVEATEKFQQLQKAYQ-ILSDE 72 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch------------------hhhHHHHHHHHHHHHHHHH-HhhHH
Confidence 4558999999999999999999999999999999964 2356788999999999999 56665
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
..+..+.++
T Consensus 73 ekR~~YDet 81 (264)
T KOG0719|consen 73 EKRAVYDET 81 (264)
T ss_pred HHHHHHhcc
Confidence 544444433
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=107.35 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=52.4
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhH
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDE 476 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~ 476 (580)
|||++|||.++++.++|++|||+++++||||+++. ..+++.|+.|++||++ ++++..+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~v-L~d~~~R 58 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---------------------KEAEEKFKEINEAYEV-LSDPEKR 58 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------ccHHHHHHHHHHHHHH-hhChHHH
Confidence 69999999999999999999999999999999752 3567899999999995 6666644
Q ss_pred HHHH
Q 008039 477 EAAE 480 (580)
Q Consensus 477 ~~~~ 480 (580)
..+.
T Consensus 59 ~~yd 62 (354)
T TIGR02349 59 AQYD 62 (354)
T ss_pred Hhhh
Confidence 4443
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-08 Score=107.79 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=52.6
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||++ ++++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~~ 60 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA---------------------KDAEKKFKEINAAYDV-LKDEQK 60 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------cCHHHHHHHHHHHHHH-hhhHhH
Confidence 589999999999999999999999999999999753 2467789999999995 555654
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 r~~yD 65 (372)
T PRK14300 61 RAAYD 65 (372)
T ss_pred hhHHH
Confidence 44443
|
|
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=107.20 Aligned_cols=64 Identities=27% Similarity=0.480 Sum_probs=54.9
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++.++|++|||+++++||||++.. ..+++.|+.|++||+ +++++..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---------------------~~a~~~~~~i~~Ay~-vL~d~~~ 59 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---------------------KGAAEKFAQINEAYA-VLSDAEK 59 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hhHHHHHHHHHHHHH-Hhcchhh
Confidence 489999999999999999999999999999999753 357889999999999 5667765
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 60 r~~yd~ 65 (371)
T PRK14292 60 RAHYDR 65 (371)
T ss_pred hhhHhh
Confidence 555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-06 Score=89.32 Aligned_cols=219 Identities=11% Similarity=0.040 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
|..++-..+|.+|+...|..+.+|.+-|.-.+..|+...|..++..++ +.+|+ +..++...++|...
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af---~~~pn----------seeiwlaavKle~e 630 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF---EANPN----------SEEIWLAAVKLEFE 630 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH---HhCCC----------cHHHHHHHHHHhhc
Confidence 677778889999999999999999999999999999999999888865 33332 23444555555443
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
+.. . +--+++++.-......+.+| +.-+.....+|+.++|+.+++.+++.-
T Consensus 631 n~e----------------~-eraR~llakar~~sgTeRv~--mKs~~~er~ld~~eeA~rllEe~lk~f---------- 681 (913)
T KOG0495|consen 631 NDE----------------L-ERARDLLAKARSISGTERVW--MKSANLERYLDNVEEALRLLEEALKSF---------- 681 (913)
T ss_pred ccc----------------H-HHHHHHHHHHhccCCcchhh--HHHhHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 310 0 11123333222223334444 444677888999999999999998752
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|+.......+ |.++-..++.+.|-..|...+..+ |
T Consensus 682 ----------------------------p~f~Kl~lml------------GQi~e~~~~ie~aR~aY~~G~k~c-----P 716 (913)
T KOG0495|consen 682 ----------------------------PDFHKLWLML------------GQIEEQMENIEMAREAYLQGTKKC-----P 716 (913)
T ss_pred ----------------------------CchHHHHHHH------------hHHHHHHHHHHHHHHHHHhccccC-----C
Confidence 5556555554 899999999999999999999974 4
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....+|..++..--+.|+.-.|...++++.--||.+...|+..-.+-+..|..+.|.....+|++-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577889999999999999999999999999999999999999999999999999999999999655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=95.61 Aligned_cols=144 Identities=19% Similarity=0.103 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.-..|..||+.|+|..|+..|++++..-.. ...+ +++...... --
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~----------~~~~---------------------~~ee~~~~~----~~ 255 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEY----------RRSF---------------------DEEEQKKAE----AL 255 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhc----------cccC---------------------CHHHHHHHH----HH
Confidence 445699999999999999999999876311 1111 111111111 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
.+..+.+.+.++.+.++|.+|+.+++++|.+ ++.|..++|.+|.|++.+|+|+.|+.+|.++++++|+|-.+...
T Consensus 256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-----~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 256 KLACHLNLAACYLKLKEYKEAIESCNKVLEL-----DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 2334455689999999999999999999997 45589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 322 RALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
+..+..+..++.+. ...|.++...
T Consensus 331 l~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 331 LIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998888887766 5667666543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.4e-07 Score=94.58 Aligned_cols=130 Identities=18% Similarity=0.043 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
.-.+|..+..++..|.+++|...++..+.. -|++.....+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------------------------------------~P~N~~~~~~~- 346 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------------------------------------QPDNPYYLELA- 346 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------------------------------------CCCCHHHHHHH-
Confidence 345677888999999999999999986643 15555544444
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.++++.++..+|++.+.+++.+ .|....+..|+|.++++.|++.+|+..+++.+.-+|+++..
T Consensus 347 -----------~~i~~~~nk~~~A~e~~~kal~l-----~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 347 -----------GDILLEANKAKEAIERLKKALAL-----DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred -----------HHHHHHcCChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 89999999999999999999997 45578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|..+|++|..+|+-.+|...+-...
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999888888777766654443
|
|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=106.49 Aligned_cols=65 Identities=18% Similarity=0.300 Sum_probs=54.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||++|++||||+++.. ..|++.|++|++||++ ++++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------------------~~a~~~f~~i~~Ay~~-L~d~~ 62 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--------------------KEAEEKFKEAAEAYDV-LSDPD 62 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------------hHHHHHHHHHHHHHHH-hcCHH
Confidence 36999999999999999999999999999999997642 3578899999999995 55665
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 63 ~R~~yD 68 (386)
T PRK14289 63 KRSRYD 68 (386)
T ss_pred HHHHHH
Confidence 444333
|
|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-08 Score=112.48 Aligned_cols=66 Identities=14% Similarity=0.298 Sum_probs=55.9
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++|+..+|++|||++|++||||+++. ..|...|+.|++||+ +|+|+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~---------------------~~A~ekFq~I~EAYe-VLSDp 628 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSG---------------------NEGFHKFKKINEAYQ-ILGDI 628 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------------------chHHHHHHHHHHHHH-HhCCH
Confidence 45689999999999999999999999999999999865 135678999999999 57778
Q ss_pred hhHHHHHH
Q 008039 474 MDEEAAEK 481 (580)
Q Consensus 474 ~~~~~~~~ 481 (580)
..+..+.+
T Consensus 629 ~kRk~YD~ 636 (1136)
T PTZ00341 629 DKKKMYNK 636 (1136)
T ss_pred HHHHHHhh
Confidence 75555543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-08 Score=99.26 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=151.2
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
|..|--....+|..- ..+++++|+++|..++.++|.+.+++...|.-|+.-++.+-|+..|++++. + |.
T Consensus 287 P~~VT~l~g~ARi~e---am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq---m-----G~ 355 (478)
T KOG1129|consen 287 PFDVTYLLGQARIHE---AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ---M-----GA 355 (478)
T ss_pred CchhhhhhhhHHHHH---HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH---h-----cC
Confidence 333444445555443 468899999999999999999999999999999999999999999999662 2 00
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
. .+ ..+.++|.||+..+++|-++
T Consensus 356 ~------------------------------sp---------------------------eLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 356 Q------------------------------SP---------------------------ELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred C------------------------------Ch---------------------------HHHhhHHHHHHhhcchhhhH
Confidence 0 00 14778999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++...+. +.....-+++. |.++...|++
T Consensus 379 ~sf~RAlstat~-------------------------------------~~~aaDvWYNl----------g~vaV~iGD~ 411 (478)
T KOG1129|consen 379 PSFQRALSTATQ-------------------------------------PGQAADVWYNL----------GFVAVTIGDF 411 (478)
T ss_pred HHHHHHHhhccC-------------------------------------cchhhhhhhcc----------ceeEEeccch
Confidence 999999876421 22334445555 8899999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
.-|-++|.-+|.- ++.+..+|+|+|..-.+.|+.++|...++.|-.+.|+-.+..++++.+
T Consensus 412 nlA~rcfrlaL~~-----d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 412 NLAKRCFRLALTS-----DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHHHHHHhcc-----CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999984 445899999999999999999999999999999999998888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-07 Score=90.88 Aligned_cols=206 Identities=15% Similarity=0.104 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHHHHhh---------ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 22 IVDKYIRDARTLIATQ---------EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~---------~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
..++++++|...+... ...|+++|.++|++| |.++...++|++|.++|.++... ..
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~-~~ 66 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADC-YE 66 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHH-HH
Confidence 3466777777766432 123788888777776 78888999999999999996522 11
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
..++. ......|...+.+|...
T Consensus 67 ~~~~~----------------------------------------------------------~~Aa~~~~~Aa~~~k~~ 88 (282)
T PF14938_consen 67 KLGDK----------------------------------------------------------FEAAKAYEEAANCYKKG 88 (282)
T ss_dssp HTT-H----------------------------------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HcCCH----------------------------------------------------------HHHHHHHHHHHHHHHhh
Confidence 00000 00112355556666555
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+..|++++.+-... -....+... +...|..
T Consensus 89 -~~~~Ai~~~~~A~~~y~~~-----------------------------------G~~~~aA~~---------~~~lA~~ 123 (282)
T PF14938_consen 89 -DPDEAIECYEKAIEIYREA-----------------------------------GRFSQAAKC---------LKELAEI 123 (282)
T ss_dssp -THHHHHHHHHHHHHHHHHC-----------------------------------T-HHHHHHH---------HHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhc-----------------------------------CcHHHHHHH---------HHHHHHH
Confidence 9999999999999874220 011222221 2233888
Q ss_pred HHHc-CCHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------cH-HHHHHHH
Q 008039 253 ALDA-GLYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------CI-QALDTRA 323 (580)
Q Consensus 253 ~~~~-g~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------~~-~A~~~ra 323 (580)
+... |++++|+++|.+|+++-.... ......++.+.|.++..+|+|++|+..|++++...-+ .+ +.++..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 8888 999999999999999732221 2334678889999999999999999999999874211 23 3457788
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|++..||+..|...|++....
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 8999999999999999988544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-07 Score=100.44 Aligned_cols=91 Identities=18% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|.++.+.++++.|+..|..++.+ .|.+...|+|++.+|+++|+-.+|...+.+|++-+-++.+.|-+.-.+....
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL-----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL-----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc-----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 66777777777777777777775 3446677777777777777777777777777777766677777777777777
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|.+++|+..|.+.+.+
T Consensus 601 ge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDL 616 (777)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 7777777777776665
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.9e-08 Score=105.90 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=53.3
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||++|||.++++..+|++|||++++++|||+++. ..++..|+.|++||++ ++++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---------------------~~a~~~f~~i~~Ay~v-L~~~~~ 60 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE---------------------PGAEDRFKEINRAYEV-LSDPET 60 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------cCHHHHHHHHHHHHHH-HhchHH
Confidence 589999999999999999999999999999999754 2467889999999995 566664
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 61 R~~yd 65 (374)
T PRK14293 61 RARYD 65 (374)
T ss_pred HHHHh
Confidence 54444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.3e-07 Score=91.22 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=144.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-----C-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALS-----P-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~-----P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+-+...+++..|-..+. ..|++.+|.+.|.+|..+. + ....++..-+.++... ++++|+++|++++.....
T Consensus 30 ~~e~Aa~~y~~Aa~~fk--~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFK--LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHH--HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 33455555566655553 5688999999999987654 2 2234566666666555 999999999998743222
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.+. + ... .-.+..+|.+|...
T Consensus 107 ~G~-~-----------------------------------------------~~a-----------A~~~~~lA~~ye~~ 127 (282)
T PF14938_consen 107 AGR-F-----------------------------------------------SQA-----------AKCLKELAEIYEEQ 127 (282)
T ss_dssp CT--H-----------------------------------------------HHH-----------HHHHHHHHHHHCCT
T ss_pred cCc-H-----------------------------------------------HHH-----------HHHHHHHHHHHHHH
Confidence 110 0 000 11456789999998
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+.+|++++.+-... ......... +...|.
T Consensus 128 ~~d~e~Ai~~Y~~A~~~y~~e-----------------------------------~~~~~a~~~---------~~~~A~ 163 (282)
T PF14938_consen 128 LGDYEKAIEYYQKAAELYEQE-----------------------------------GSPHSAAEC---------LLKAAD 163 (282)
T ss_dssp T--HHHHHHHHHHHHHHHHHT-----------------------------------T-HHHHHHH---------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHC-----------------------------------CChhhHHHH---------HHHHHH
Confidence 99999999999999884320 011111111 223388
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCC-CcccH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-----HHHHHHHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAP-QGFLA-ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-----QALDTRAL 324 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~-~~~~a-~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-----~A~~~ra~ 324 (580)
.+.+.|+|++|+..|.+++......+ ....+ ..+++.+.|++.+|++-.|...+++....+|.+. +....+-.
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999988521111 11223 4677889999999999999999999999999773 34444455
Q ss_pred HHHh--cCChhHHHHHHHHHHHH
Q 008039 325 LLET--IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~--lg~~~eAi~~~~~al~l 345 (580)
++.. ...|++|+.+|.+..+|
T Consensus 244 A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHhCCHHHHHHHHHHHcccCcc
Confidence 5543 56789999999888655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.7e-06 Score=93.22 Aligned_cols=92 Identities=22% Similarity=0.149 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.+..+.+.+.-++|..+..++-.+ .+..+..|+.+|.++...|++.+|...|..|+.+||+++.....+|.++..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 466777788888888899999887 567899999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHH--HHHHHHHH
Q 008039 329 IRCLPDCLH--DLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~--~~~~al~l 345 (580)
.|+-.-|.. .+..++++
T Consensus 731 ~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred hCCcchHHHHHHHHHHHhh
Confidence 999888877 88888777
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=74.72 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=46.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|..++..|+|++|+..|++++.. .|.+..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ-----DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC-----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 77777788888888888888775 345777778888888888888888888888888777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-07 Score=88.31 Aligned_cols=91 Identities=19% Similarity=0.090 Sum_probs=86.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|.+|+..+.++..+ .|.++.+|+-+|.+|.++|++++|-..|.+++++.|+.+..+.++|..+.-.
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 89999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|+++.|...+.++...
T Consensus 182 gd~~~A~~lll~a~l~ 197 (257)
T COG5010 182 GDLEDAETLLLPAYLS 197 (257)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-07 Score=77.92 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSH 239 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~ 239 (580)
.++.+|..+...|++++|+..|++++... |++.. ....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l 45 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--------------------------------------PKSTYAPNAHYWL 45 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------CCccccHHHHHHH
Confidence 47889999999999999999999988652 22111 1122223
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|.++++.|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..+++++...|++..+.
T Consensus 46 ----------~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 46 ----------GEAYYAQGKYADAAKAFLAVVKK-YPK-SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ----------HHHHHhhccHHHHHHHHHHHHHH-CCC-CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999996 343 344578899999999999999999999999999999987754
Q ss_pred H
Q 008039 320 D 320 (580)
Q Consensus 320 ~ 320 (580)
.
T Consensus 114 ~ 114 (119)
T TIGR02795 114 L 114 (119)
T ss_pred H
Confidence 3
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.5e-08 Score=99.64 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=58.4
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++..||++||++||.++|||-+.. ..|...|+.|.+||| ++++..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~---------------------~~a~~kF~eI~~AYE-iLsd~e 99 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD---------------------KEASKKFKEISEAYE-ILSDEE 99 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC---------------------cchhhHHHHHHHHHH-HhcCHH
Confidence 3389999999999999999999999999999998765 478899999999999 566677
Q ss_pred hHHHHHHHHH
Q 008039 475 DEEAAEKRRK 484 (580)
Q Consensus 475 ~~~~~~~~~~ 484 (580)
++.++.....
T Consensus 100 KR~~YD~~~~ 109 (288)
T KOG0715|consen 100 KRQEYDVYGL 109 (288)
T ss_pred HHHHHHHhhh
Confidence 6777766554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-06 Score=98.69 Aligned_cols=232 Identities=13% Similarity=0.065 Sum_probs=151.2
Q ss_pred ChhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALS-PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~-P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
..|+++.|..++..+++.. +.+...+..+...|.+.|++++|...|++... | |..+++ .+ ..-
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~-d~~t~n------~l----I~~ 400 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----K-NLISWN------AL----IAG 400 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----C-CeeeHH------HH----HHH
Confidence 4588888999888888876 45567777888888889999999988887431 1 111111 00 000
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+.... ..+. --.++..+....-.+....|..+-.+|.+.|++++|..+|+...+-.
T Consensus 401 y~~~G-------~~~~----------A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~------- 456 (697)
T PLN03081 401 YGNHG-------RGTK----------AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH------- 456 (697)
T ss_pred HHHcC-------CHHH----------HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-------
Confidence 00000 0000 00111111111122223345566677788888888888777654310
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
...|+...... ....+.+.|++++|.+.+.+.--
T Consensus 457 ----------------------------g~~p~~~~y~~-------------li~~l~r~G~~~eA~~~~~~~~~----- 490 (697)
T PLN03081 457 ----------------------------RIKPRAMHYAC-------------MIELLGREGLLDEAYAMIRRAPF----- 490 (697)
T ss_pred ----------------------------CCCCCccchHh-------------HHHHHHhcCCHHHHHHHHHHCCC-----
Confidence 00122211111 16778899999999999876421
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLP 356 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p 356 (580)
.| +...|..+..++...|+++.|...+++.+.++|++...|..+..+|...|++++|...++...+. .-.+.|
T Consensus 491 -~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-----g~~k~~ 563 (697)
T PLN03081 491 -KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-----GLSMHP 563 (697)
T ss_pred -CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCccCC
Confidence 12 46678999999999999999999999999999999999999999999999999999999988544 123456
Q ss_pred Cccccc
Q 008039 357 GPAWKR 362 (580)
Q Consensus 357 ~~~w~~ 362 (580)
|-+|..
T Consensus 564 g~s~i~ 569 (697)
T PLN03081 564 ACTWIE 569 (697)
T ss_pred CeeEEE
Confidence 777743
|
|
| >KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-08 Score=91.87 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=55.3
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
..-|.|.+||+++++++.|||++||+|++++||||++... .-+..|..|.+||+.|++ .
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~--------------------~~e~~~~~I~KAY~aLTD-~ 155 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEE--------------------GDEEFFEAIAKAYQALTD-K 155 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcc--------------------hhHHHHHHHHHHHHHhcc-h
Confidence 4678999999999999999999999999999999986642 336789999999996554 5
Q ss_pred hhHHHHHHH
Q 008039 474 MDEEAAEKR 482 (580)
Q Consensus 474 ~~~~~~~~~ 482 (580)
..+|..++=
T Consensus 156 ~sreN~ekY 164 (230)
T KOG0721|consen 156 KSRENWEKY 164 (230)
T ss_pred hhHHHHHHh
Confidence 445555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.6e-06 Score=82.25 Aligned_cols=176 Identities=14% Similarity=0.147 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....++..|..++ ..|+|.+|+..|++.+...|.+ +.++..+|.+++..|+|.+|+..+++++. .-|..+
T Consensus 4 ~~~~lY~~a~~~~---~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~---~yP~~~- 76 (203)
T PF13525_consen 4 TAEALYQKALEAL---QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK---LYPNSP- 76 (203)
T ss_dssp -HHHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH---H-TT-T-
T ss_pred CHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCc-
Confidence 3456778888888 7999999999999999987755 47788999999999999999999999773 223211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC-----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG----- 173 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG----- 173 (580)
..-++++.+|.+++.+.
T Consensus 77 ----------------------------------------------------------~~~~A~Y~~g~~~~~~~~~~~~ 98 (203)
T PF13525_consen 77 ----------------------------------------------------------KADYALYMLGLSYYKQIPGILR 98 (203)
T ss_dssp ----------------------------------------------------------THHHHHHHHHHHHHHHHHHHH-
T ss_pred ----------------------------------------------------------chhhHHHHHHHHHHHhCccchh
Confidence 01246777788776653
Q ss_pred ------CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH--
Q 008039 174 ------LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR-- 245 (580)
Q Consensus 174 ------~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~-- 245 (580)
...+|+..|+..++.-|. .+--..+...+..++..+.
T Consensus 99 ~~~D~~~~~~A~~~~~~li~~yP~-----------------------------------S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 99 SDRDQTSTRKAIEEFEELIKRYPN-----------------------------------SEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp TT---HHHHHHHHHHHHHHHH-TT-----------------------------------STTHHHHHHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHCcC-----------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 345788888877755211 0122333333434433332
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIA 299 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~ 299 (580)
...-|.-+++.|.|..|+.-|..+|+- =|+ .+....++..++.+|.++|...
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~-t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN-YPD-TPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH-STT-SHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHhCChH
Confidence 234477777888888888888887774 232 3445567777777777777766
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-05 Score=82.21 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
..-.++..++.++ .+||+..|.+-++++++..|+++..+.+..++|+.+|+|.+....+.+ +..+.--.
T Consensus 152 ~l~v~ltrarlll---~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~----L~ka~~l~---- 220 (400)
T COG3071 152 TLAVELTRARLLL---NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK----LRKAGLLS---- 220 (400)
T ss_pred hHHHHHHHHHHHH---hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH----HHHccCCC----
Confidence 3444566777777 689999999999999999999999999999999999999999986665 32221100
Q ss_pred CCchhhHhHHH-HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhcccc-c--cchhHHHHHHHHHHhcCCHHH
Q 008039 102 SDSSSQQLSRE-RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCE-K--EGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 102 ~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~-~--~~~~~~~~LG~a~~~lG~~ee 177 (580)
++....++.+ -..++..-++..+ +.+ + + .-.++-+ + ........++.=+..+|+.++
T Consensus 221 -~~e~~~le~~a~~glL~q~~~~~~--~~g---L--------~-----~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~ 281 (400)
T COG3071 221 -DEEAARLEQQAWEGLLQQARDDNG--SEG---L--------K-----TWWKNQPRKLRNDPELVVAYAERLIRLGDHDE 281 (400)
T ss_pred -hHHHHHHHHHHHHHHHHHHhcccc--chH---H--------H-----HHHHhccHHhhcChhHHHHHHHHHHHcCChHH
Confidence 0000111111 1111221111000 000 0 0 0000000 0 000012234666789999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|.+....+++-. -|| . ...++ ...+-+
T Consensus 282 A~~~i~~~Lk~~------------------------------------~D~--~-L~~~~--------------~~l~~~ 308 (400)
T COG3071 282 AQEIIEDALKRQ------------------------------------WDP--R-LCRLI--------------PRLRPG 308 (400)
T ss_pred HHHHHHHHHHhc------------------------------------cCh--h-HHHHH--------------hhcCCC
Confidence 999999887541 012 1 22222 234678
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++..=++..++.+.. .|..+.+++.+|..+++.+.|.+|-.+++.||...|+ ...+..+|.+|.++|+..+|-.
T Consensus 309 d~~~l~k~~e~~l~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 309 DPEPLIKAAEKWLKQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred CchHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 888888888888886 4557799999999999999999999999999999875 6678889999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.++.++.+
T Consensus 383 ~r~e~L~~ 390 (400)
T COG3071 383 VRREALLL 390 (400)
T ss_pred HHHHHHHH
Confidence 99999866
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.5e-08 Score=100.30 Aligned_cols=111 Identities=19% Similarity=0.256 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+..+......+......+.++..++..|.+++||++|+.+|.+ .|..+.+|.+|+.++++++++..||.||..||
T Consensus 101 ds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l-----np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 101 DSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL-----NPPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc-----CCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 3445555566677778889999999999999999999999998 45589999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+..+.|-.+|.++..+|+|++|..+|..+.++
T Consensus 176 ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 176 EINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887
|
|
| >PTZ00100 DnaJ chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-08 Score=83.74 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=46.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
...++|++|||.++++.++|+++||++++++|||+.++ ..+|+.|++||++|+
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs------------------------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS------------------------TYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------------------------HHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999998422 246889999999874
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-06 Score=80.16 Aligned_cols=169 Identities=17% Similarity=0.065 Sum_probs=122.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.-|+..-|...+++...-.|.|.....++|..|-..|+|++|++.|+..+ ..+|.|..
T Consensus 64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL---~ddpt~~v------------------- 121 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLL---EDDPTDTV------------------- 121 (289)
T ss_pred HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHh---ccCcchhH-------------------
Confidence 44777788888888887779998888889999999999999999888844 23232220
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.+-..-.+.-.+|+--+||+.+..-+..-
T Consensus 122 -------------------------------------------~~KRKlAilka~GK~l~aIk~ln~YL~~F-------- 150 (289)
T KOG3060|consen 122 -------------------------------------------IRKRKLAILKAQGKNLEAIKELNEYLDKF-------- 150 (289)
T ss_pred -------------------------------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------
Confidence 11112234566778778888887776542
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
.-|.+.+..+ +..|+..|+|..|+-+|.+.+-+
T Consensus 151 -----------------------------~~D~EAW~eL-------------aeiY~~~~~f~kA~fClEE~ll~----- 183 (289)
T KOG3060|consen 151 -----------------------------MNDQEAWHEL-------------AEIYLSEGDFEKAAFCLEELLLI----- 183 (289)
T ss_pred -----------------------------cCcHHHHHHH-------------HHHHHhHhHHHHHHHHHHHHHHc-----
Confidence 1233433333 78888999999999999998886
Q ss_pred CcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
.|+++.++..+|.+++-+| ++.-|..+|.++|+++|.+..+++.+--+-
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 6778888888888888776 466788899999999998888887665444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-07 Score=72.34 Aligned_cols=99 Identities=24% Similarity=0.385 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..+++++++. |....+ ++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~--~~~~- 40 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------------------------------------PDNADA--YYNL- 40 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------------------------------------CccHHH--HHHH-
Confidence 36788999999999999999999988652 322222 2222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
|..++..|++++|+..|.+++... +....+++.+|.++..+|++++|+..+.+++.++|+
T Consensus 41 ---------~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 41 ---------AAAYYKLGKYEEALEDYEKALELD-----PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhCC-----CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 899999999999999999999972 334578999999999999999999999999998874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-07 Score=84.16 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.+....++.. |-.+|..|+|++|...|+-...+ ++.+...++.+|.|+..+|+|+.|+..|..|.
T Consensus 34 ~~~le~iY~~----------Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 34 QDMMDGLYAH----------AYEFYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555 99999999999999999998886 45578899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.++++++...+..|.|++.+|+.+.|+..|+.+++
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999965
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-07 Score=78.70 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPR--LELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~--~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
+|+|+.|+..|+++++.+|. +..++..+|.||+.+|+|++|+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999995 567788899999999999999999887
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-07 Score=72.35 Aligned_cols=60 Identities=22% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 286 MHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 286 ~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999888
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.5e-06 Score=100.36 Aligned_cols=157 Identities=10% Similarity=-0.042 Sum_probs=125.5
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
+...+|.+..++..+...+...+++++|++.|+..+ +..|+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l---~~~P~~----------------------------------- 64 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHL---KEHKKS----------------------------------- 64 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCcc-----------------------------------
Confidence 456789999999999999999999999999999744 222211
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
...|+.+|.+++..+++.++... .++
T Consensus 65 ---------------------------i~~yy~~G~l~~q~~~~~~~~lv--~~l------------------------- 90 (906)
T PRK14720 65 ---------------------------ISALYISGILSLSRRPLNDSNLL--NLI------------------------- 90 (906)
T ss_pred ---------------------------eehHHHHHHHHHhhcchhhhhhh--hhh-------------------------
Confidence 11467789999999998888654 322
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q 008039 212 VSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA 291 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a 291 (580)
.......+| .++++|...|.- .+.+-.+++.+|.|
T Consensus 91 ---------------------------------------~~~~~~~~~-~~ve~~~~~i~~-----~~~~k~Al~~LA~~ 125 (906)
T PRK14720 91 ---------------------------------------DSFSQNLKW-AIVEHICDKILL-----YGENKLALRTLAEA 125 (906)
T ss_pred ---------------------------------------hhcccccch-hHHHHHHHHHHh-----hhhhhHHHHHHHHH
Confidence 222334566 677777766663 34466799999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|-++|++++|+..++++|++||+++.++.++|..|... ++++|+..+.+|+..+
T Consensus 126 Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 126 YAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999998774
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-06 Score=77.52 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=79.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|..++.. .++ ......+.++++.+++..|+|++|+..+.. +.-.+-.+.++..+|.++...
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~-~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALAN-APD-PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-CCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC
Confidence 99999999999999999999995 222 355678899999999999999999999966 444555677899999999999
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
|++++|+..|++++
T Consensus 132 g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 132 GDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999999873
|
|
| >PRK05014 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=88.35 Aligned_cols=67 Identities=21% Similarity=0.324 Sum_probs=53.5
Q ss_pred chhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||++|||++. .+..+|+++|++++.++|||+..+.... .+..+...|..|++||++| +++.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~---------------~~~~a~~~s~~iN~AY~~L-~dp~ 65 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASER---------------ERLLAVQQAATINDAYQTL-KHPL 65 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHH---------------HHHHHHHHHHHHHHHHHHH-CChh
Confidence 79999999986 6789999999999999999997654322 4466888999999999965 5565
Q ss_pred hHHHH
Q 008039 475 DEEAA 479 (580)
Q Consensus 475 ~~~~~ 479 (580)
.+..+
T Consensus 66 ~Ra~Y 70 (171)
T PRK05014 66 KRAEY 70 (171)
T ss_pred HHHHH
Confidence 44444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-05 Score=78.68 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=137.7
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.|=++.|...|....+..-.-..++..+..+|-..+.+++||+.-++.. ++.++
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~---k~~~q----------------------- 173 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLV---KLGGQ----------------------- 173 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HcCCc-----------------------
Confidence 3556677777777776666666777777777777777777777655532 11110
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
+. ..-++. -|.-|++.+....+++.|+..+.++++-+
T Consensus 174 ------------~~-----------~~eIAq-----------fyCELAq~~~~~~~~d~A~~~l~kAlqa~--------- 210 (389)
T COG2956 174 ------------TY-----------RVEIAQ-----------FYCELAQQALASSDVDRARELLKKALQAD--------- 210 (389)
T ss_pred ------------cc-----------hhHHHH-----------HHHHHHHHHhhhhhHHHHHHHHHHHHhhC---------
Confidence 00 001111 25667888888889999999999998753
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|.+.-+...+ |.++...|+|+.|++.+..+++-+ .
T Consensus 211 -----------------------------~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn----~ 245 (389)
T COG2956 211 -----------------------------KKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQN----P 245 (389)
T ss_pred -----------------------------ccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhC----h
Confidence 3333333333 999999999999999999999962 3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.+.+.+.-.+-.||..+|+.++.+..+.++.+..++ +.+...++..-....-.++|...+.+-+.
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 457788888999999999999999999999998764 55667777888888888888877766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.9e-06 Score=80.12 Aligned_cols=120 Identities=14% Similarity=0.160 Sum_probs=84.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQ 235 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ 235 (580)
.....|+.+|.++..+|++++|+..|++++.+. |++. ....
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--------------------------------------~~~~~~~~~ 74 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--------------------------------------IDPYDRSYI 74 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------------------------------------ccchhhHHH
Confidence 345567889999999999999999999998762 1111 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHH-------HcCChHHH-------
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYR-------SSGRIAES------- 301 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~-------~lg~~~eA------- 301 (580)
+... |..+...|++++|+..|.+++.+ .|.....+.++|.++. .+|++++|
T Consensus 75 ~~~l----------g~~~~~~g~~~eA~~~~~~Al~~-----~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 75 LYNI----------GLIHTSNGEHTKALEYYFQALER-----NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHH----------HHHHHHcCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 3333 99999999999999999999997 2335566777777777 88887754
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 302 IADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 302 l~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
+..+.+++.++|++.. ..+..+..+|+|
T Consensus 140 ~~~~~~a~~~~p~~~~---~~~~~~~~~~~~ 167 (168)
T CHL00033 140 AEYWKQAIALAPGNYI---EAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHHHhCcccHH---HHHHHHHHhcCC
Confidence 5555566777886653 233444445544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-05 Score=85.53 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPS 89 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~ 89 (580)
..|+..+..+. ..+-++-|...|-.+|...|.....|.--+..=-.-|..++-...+++++..
T Consensus 517 ~tw~~da~~~~---k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 517 STWLDDAQSCE---KRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred hHHhhhHHHHH---hcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34445555544 3455666777777778888877666655444444566666666667775533
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.8e-07 Score=97.60 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|...+..++|.++..+++..+++ .|.....|+++|.|..+++++..|..+|.+++.++|++..+|.+++.+|..+
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 66778899999999999999998 5668899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
++-.+|...++++++.
T Consensus 567 ~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhHHHHHHHHHHhhc
Confidence 9999999999998765
|
|
| >PRK09430 djlA Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.7e-07 Score=95.11 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=52.7
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
...++|++|||.++++.++|+++||+++.+||||+..+.... ++....+.+.|+.|++||++|.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~-------------~~~~~~a~ek~~~I~~AYe~L~ 261 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLP-------------PEMMEMAKEKAQEIQAAYELIK 261 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCC-------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999996432111 1234678999999999999764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-06 Score=96.56 Aligned_cols=197 Identities=10% Similarity=0.083 Sum_probs=146.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++++|+..|+.. +.+...|..+...|...|+.++|++.|++.+.. ..
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~-g~------------------------- 585 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GV------------------------- 585 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------------------------
Confidence 357888888888876 556788888888999999999999988874411 01
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.|+ . ..|..+-.+|.+.|++++|..+|+...+..
T Consensus 586 ~Pd-----------------------------------~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~-------- 619 (857)
T PLN03077 586 NPD-----------------------------------E---VTFISLLCACSRSGMVTQGLEYFHSMEEKY-------- 619 (857)
T ss_pred CCC-----------------------------------c---ccHHHHHHHHhhcChHHHHHHHHHHHHHHh--------
Confidence 111 1 124445568999999999999999866321
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
...|+...... + ...+.+.|++++|.+.+++. .+ .|
T Consensus 620 ---------------------------gi~P~~~~y~~-l------------v~~l~r~G~~~eA~~~~~~m-~~-~p-- 655 (857)
T PLN03077 620 ---------------------------SITPNLKHYAC-V------------VDLLGRAGKLTEAYNFINKM-PI-TP-- 655 (857)
T ss_pred ---------------------------CCCCchHHHHH-H------------HHHHHhCCCHHHHHHHHHHC-CC-CC--
Confidence 01243322221 1 77889999999999998874 22 12
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCC
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPG 357 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~ 357 (580)
+..+|..+-.++..-|+.+.+....++.++++|++...|..++.+|...|+|++|....+...+. .-.+.||
T Consensus 656 ---d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~-----g~~k~~g 727 (857)
T PLN03077 656 ---DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN-----GLTVDPG 727 (857)
T ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc-----CCCCCCC
Confidence 35667666667777899999999999999999999999999999999999999999999888654 2345678
Q ss_pred ccccc
Q 008039 358 PAWKR 362 (580)
Q Consensus 358 ~~w~~ 362 (580)
-+|..
T Consensus 728 ~s~ie 732 (857)
T PLN03077 728 CSWVE 732 (857)
T ss_pred ccEEE
Confidence 88864
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.6e-05 Score=85.21 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=142.5
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+...+ +.+.|...|.+++..|+-.|.+...+.++|..|..+|+-++|.+.++..+. +|.
T Consensus 12 ~~~lk~y---E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~---------- 72 (700)
T KOG1156|consen 12 RRALKCY---ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDL---------- 72 (700)
T ss_pred HHHHHHH---HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc------cCc----------
Confidence 4444444 688999999999999999999999999999999999999999999888551 111
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
.+-. -|+++|.++....++++||.+|+.|+.
T Consensus 73 ------------------------~S~v-------------------------CwHv~gl~~R~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 73 ------------------------KSHV-------------------------CWHVLGLLQRSDKKYDEAIKCYRNALK 103 (700)
T ss_pred ------------------------ccch-------------------------hHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 1112 378899999999999999999999997
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH----HHHHHH-----------------
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI----KLLLRR----------------- 246 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~----k~~~~~----------------- 246 (580)
+. |++..+..-+..+ ++..-+
T Consensus 104 ~~--------------------------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~ 145 (700)
T KOG1156|consen 104 IE--------------------------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS 145 (700)
T ss_pred cC--------------------------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence 73 4444433322211 111111
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHhccC--CC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 247 -RTAAIAALDAGLYSEAIRHFSKIVDGRR--GA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 247 -k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
.--+..++-.|+|..|+......+.... +. ..-....+...+...+.+.|.+++|++....-=.---+.......+
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~k 225 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhH
Confidence 1225566667777777777766666431 11 0111345556666777777777777665544211111233445667
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++.++++++|+..|...+..
T Consensus 226 a~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHHHHHHhhHHhHHHHHHHHHhh
Confidence 78888888888888888887655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-06 Score=81.71 Aligned_cols=168 Identities=23% Similarity=0.329 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..++..|+|.+|+..|++.+..- |. .+....+.+.+|.++++.|+|.+|+..+++-|...|++ ..+++.+|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRY-PN-SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH--TT-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 34999999999999999999999863 43 56788999999999999999999999999999999987 468999999
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCC
Q 008039 325 LLETIR-----------CLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGET 393 (580)
Q Consensus 325 ~~~~lg-----------~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~ 393 (580)
++..+. ...+|+..|+..+..+ |+..+ ...+..++..++.+++..+-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y---------P~S~y-------------~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY---------PNSEY-------------AEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH----------TTSTT-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHC---------cCchH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 977653 2357888888887774 44322 12334444445544444444
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSV 469 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l 469 (580)
....||-..|-. ..-+ .+.+..++..||- ..+.+-...+.++|..|
T Consensus 146 ~ia~~Y~~~~~y----~aA~--~r~~~v~~~yp~t------------------------~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 146 YIARFYYKRGKY----KAAI--IRFQYVIENYPDT------------------------PAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHHHHHCTT-H----HHHH--HHHHHHHHHSTTS------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccH----HHHH--HHHHHHHHHCCCC------------------------chHHHHHHHHHHHHHHh
Confidence 455666554422 2222 2556688999996 34455566778888744
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-05 Score=85.95 Aligned_cols=263 Identities=18% Similarity=0.120 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC---
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS--- 101 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~--- 101 (580)
-++..+..+. +.|+++.||++++..-..-++-..++..+|.+|+.+|++++|...|+..| +.+|++..-..
T Consensus 6 ~lLY~~~il~---e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li---~rNPdn~~Yy~~L~ 79 (517)
T PF12569_consen 6 LLLYKNSILE---EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI---DRNPDNYDYYRGLE 79 (517)
T ss_pred HHHHHHHHHH---HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCcHHHHHHHH
Confidence 3455666665 67999999999999998889999999999999999999999999999844 55554441100
Q ss_pred ---------CCchhhH---h------------HHHHHhhhcCCCCCCCCC---------CCCCCCc----ccccchHHHH
Q 008039 102 ---------SDSSSQQ---L------------SRERVKLLHSGGDSSDDS---------LGRDPSF----KCFSVSDLKK 144 (580)
Q Consensus 102 ---------~~~~~~~---~------------~~~~~~ll~~~~~~~~~~---------~~~~~~~----~~~~~~~~~k 144 (580)
+..+... + ...|..|--...+.|... ..+-+++ +.+=...-+.
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKA 159 (517)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHH
Confidence 0000000 0 011111100000000000 0011111 1111111112
Q ss_pred HHHHh--------hhc------------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 008039 145 KVMAG--------LCR------------NCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDS 204 (580)
Q Consensus 145 ~~~~~--------l~~------------~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~ 204 (580)
.++.. +.. .+.....|.++.|++.|-++|++++|+.++++++...
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------------- 224 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------------- 224 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------------
Confidence 22221 111 1122347999999999999999999999999998652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHH
Q 008039 205 FPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAEC 284 (580)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~ 284 (580)
|.... .++.+ |.++-+.|++.+|.+.+..|-.++ .. .--+
T Consensus 225 -----------------------Pt~~e--ly~~K----------arilKh~G~~~~Aa~~~~~Ar~LD-~~----DRyi 264 (517)
T PF12569_consen 225 -----------------------PTLVE--LYMTK----------ARILKHAGDLKEAAEAMDEARELD-LA----DRYI 264 (517)
T ss_pred -----------------------CCcHH--HHHHH----------HHHHHHCCCHHHHHHHHHHHHhCC-hh----hHHH
Confidence 32222 22223 999999999999999999999982 32 2233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALE--PS-------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYNA 348 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~-------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~ 348 (580)
-..-+..+++.|++++|...+..-..-+ |. +..-...-|.+|...|++..|+.-|..+.+.+..
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4445777889999999999888766554 21 1344466799999999999999999999888643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-06 Score=94.19 Aligned_cols=189 Identities=16% Similarity=0.086 Sum_probs=144.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...|+.+|=+++.++|..+.++..+|.+|...-+..-|-.+|+++. ++++.+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAF---eLDatda--------------------- 526 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAF---ELDATDA--------------------- 526 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchhh---------------------
Confidence 3568899999999999999999999999999999888888999999954 3322211
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.++-.++..|....+++.|....-..-+.+++
T Consensus 527 -----------------------------------------eaaaa~adtyae~~~we~a~~I~l~~~qka~a------- 558 (1238)
T KOG1127|consen 527 -----------------------------------------EAAAASADTYAEESTWEEAFEICLRAAQKAPA------- 558 (1238)
T ss_pred -----------------------------------------hhHHHHHHHhhccccHHHHHHHHHHHhhhchH-------
Confidence 12223467778888888887764333322211
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
.....++.. .|-.+.+.+++..||..|+.++.. .
T Consensus 559 -------------------------------~~~k~nW~~----------rG~yyLea~n~h~aV~~fQsALR~-----d 592 (1238)
T KOG1127|consen 559 -------------------------------FACKENWVQ----------RGPYYLEAHNLHGAVCEFQSALRT-----D 592 (1238)
T ss_pred -------------------------------HHHHhhhhh----------ccccccCccchhhHHHHHHHHhcC-----C
Confidence 111111221 288888889999999999999987 3
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|....+|..+|.+|...|+|.-|+..|++|..++|.+.-+.|..+.+...+|+|.+|+..+...+.-
T Consensus 593 PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 593 PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4477888899999999999999999999999999999988899999999999999999888887654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=91.04 Aligned_cols=46 Identities=9% Similarity=0.084 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~ 86 (580)
..|++++|..+|+.. .+.+...|..+...|...|++++|++.|++.
T Consensus 271 k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 271 KCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 347777777777754 3445677777778888888888888777764
|
|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-07 Score=86.11 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=45.4
Q ss_pred cchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+|++|||.+++ +..+|++|||++++++||||+++ ++.|+.|++||++|.+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------------------------~e~~k~in~Ay~~L~d 58 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------------------------EEKMKELNTLYKKFRE 58 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------------------------hHHHHHHHHHHHHHhh
Confidence 3589999999999 99999999999999999999532 3579999999996544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-05 Score=85.12 Aligned_cols=47 Identities=28% Similarity=0.338 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.|+++.|+..++..+...|+|+.++..++.+++..+++.+|++.+++
T Consensus 319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~k 365 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKK 365 (484)
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=86.93 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=84.4
Q ss_pred HHHH-HHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHH
Q 008039 250 AIAA-LDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALL 325 (580)
Q Consensus 250 G~~~-~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~ 325 (580)
+..+ ++.|+|++|+..|...|... |+ .++.+.+++.+|.+|+..|++++|+..|.+++...|+ .+++++.+|.+
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~y-P~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~ 226 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKY-PD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVI 226 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHC-cC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHH
Confidence 6655 67899999999999999963 43 4455789999999999999999999999999998887 58899999999
Q ss_pred HHhcCChhHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~ 346 (580)
+..+|++++|+..|+++++.+
T Consensus 227 ~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 227 MQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999998874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-05 Score=91.08 Aligned_cols=224 Identities=12% Similarity=0.072 Sum_probs=145.9
Q ss_pred ChhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 38 EHSEIASALSLLDAALA----LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~----l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
..|++++|+++|+.... +.|+. ..|..+-.+|...|++++|.+.|+..... ...| +...++ . -
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p-~~~tyn------s----L 620 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEY-NIKG-TPEVYT------I----A 620 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC-ChHHHH------H----H
Confidence 57899999999999875 56764 66777788899999999999999885421 1111 000000 0 0
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
...+... +--+.-.+++..+....-.+....|..+..+|.+.|++++|..+|+...+..
T Consensus 621 I~ay~k~-----------------G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G---- 679 (1060)
T PLN03218 621 VNSCSQK-----------------GDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG---- 679 (1060)
T ss_pred HHHHHhc-----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----
Confidence 0000000 0000111222222222222334456677788888888888888888765431
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
..|+.... ..+ ...+.+.|++++|+..|.+.....
T Consensus 680 --------------------------------~~pd~~ty-nsL------------I~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 680 --------------------------------IKLGTVSY-SSL------------MGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred --------------------------------CCCCHHHH-HHH------------HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11332222 222 678889999999999999887641
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
. .| +...|..+..+|.+.|++++|+..+++.... .| +...|..+-.++...|++++|...|..+++.
T Consensus 715 -~--~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 715 -L--RP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -C--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1 22 5677999999999999999999999987654 34 4567777888999999999999999998654
|
|
| >PRK01356 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-07 Score=85.77 Aligned_cols=66 Identities=23% Similarity=0.442 Sum_probs=53.1
Q ss_pred cchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 396 VDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 396 ~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.+||.+|||++. ++..+|+++|+++++++|||+..... .+..+...+..|++||++ +++|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~-----------------~k~~~~~~s~~in~AY~~-L~dp 63 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQ-----------------EKEQNLIIASELNNAYST-LKDA 63 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHH-----------------HHHHHHHHHHHHHHHHHH-hCCH
Confidence 489999999986 67999999999999999999975422 235667789999999995 5667
Q ss_pred hhHHHH
Q 008039 474 MDEEAA 479 (580)
Q Consensus 474 ~~~~~~ 479 (580)
..+..+
T Consensus 64 ~~Ra~Y 69 (166)
T PRK01356 64 LKRAEY 69 (166)
T ss_pred HHHHHH
Confidence 655555
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-07 Score=95.03 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=63.6
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA---LDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A---~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|..+..++|+|.+|+.+|+|++|+..|++||+++|++..+ |+++|.+|..+|++++|+.+|+++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999865 9999999999999999999999999873
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-06 Score=92.35 Aligned_cols=145 Identities=13% Similarity=0.022 Sum_probs=108.4
Q ss_pred cccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008039 155 EKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE 231 (580)
Q Consensus 155 ~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~ 231 (580)
.+...|.+++.|..|+..+. ++.|+.+|++++++ ||++.
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------------------------------------dP~~a 376 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------------------------------------EPDFT 376 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------------------------------------CCCcH
Confidence 34567888999998887766 88999999999987 47776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 232 SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 232 ~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.+...+..+..... +..-...++...+.....+++.+ +. .+..+.+|.-+|..+...|++++|...+++|+.+
T Consensus 377 ~a~A~la~~~~~~~----~~~~~~~~~l~~a~~~~~~a~al--~~-~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L 449 (517)
T PRK10153 377 YAQAEKALADIVRH----SQQPLDEKQLAALSTELDNIVAL--PE-LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL 449 (517)
T ss_pred HHHHHHHHHHHHHH----hcCCccHHHHHHHHHHHHHhhhc--cc-CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 66555422111100 00001123455666667776664 11 2335678888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+| +..+|..+|.++...|++++|+..|++|+.+
T Consensus 450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99 4789999999999999999999999999888
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.8e-06 Score=80.66 Aligned_cols=115 Identities=22% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-.-|.-+|..|++++|..-|+.++.+.| +-+......
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp-------------------------------------~~~~e~rsI----- 135 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCP-------------------------------------STSTEERSI----- 135 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCc-------------------------------------cccHHHHHH-----
Confidence 44468899999999999999999998732 111221111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
-+-.+|.++++.+.|+.||..++++|++ .|....++..||.+|-++.+|++|+.||.+.+++||..-.+.-.
T Consensus 136 ---ly~Nraaa~iKl~k~e~aI~dcsKaiel-----~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 136 ---LYSNRAAALIKLRKWESAIEDCSKAIEL-----NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred ---HHhhhHHHHHHhhhHHHHHHHHHhhHhc-----CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1223489999999999999999999998 45577889999999999999999999999999999998876554
Q ss_pred HHHHH
Q 008039 322 RALLL 326 (580)
Q Consensus 322 ra~~~ 326 (580)
.+.+-
T Consensus 208 i~rl~ 212 (271)
T KOG4234|consen 208 IARLP 212 (271)
T ss_pred HHhcC
Confidence 44443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.9e-05 Score=90.92 Aligned_cols=225 Identities=16% Similarity=0.127 Sum_probs=153.9
Q ss_pred ChhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh-hhhcCCCCCCCCCCchhhHhHHHHH
Q 008039 38 EHSEIASALSLLDAALA--LSPRLELALELKARSLLYLRRFKDVADMLQDYIPS-LKMANDDSGSVSSDSSSQQLSRERV 114 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~--l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (580)
..|++++|+.+|+...+ +.|+ ...|..+..++...|++++|.+.+.+.... ....|+.. +. ..+ +
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-Ty------naL----I 586 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TV------GAL----M 586 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HH------HHH----H
Confidence 67999999999999966 5676 577888899999999999999999985421 11112100 00 000 0
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 115 KLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 115 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
..+... =.+ +.-.+++..+....-.+....|..+...|++.|++++|+.+|....+..
T Consensus 587 ~ay~k~----------------G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G----- 644 (1060)
T PLN03218 587 KACANA----------------GQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG----- 644 (1060)
T ss_pred HHHHHC----------------CCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Confidence 000000 000 1112233333222222333456677888888999999998888765320
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~ 274 (580)
..|+......+ ...+.+.|++++|++.|.+.++..
T Consensus 645 -------------------------------v~PD~~TynsL-------------I~a~~k~G~~eeA~~l~~eM~k~G- 679 (1060)
T PLN03218 645 -------------------------------VKPDEVFFSAL-------------VDVAGHAGDLDKAFEILQDARKQG- 679 (1060)
T ss_pred -------------------------------CCCCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHcC-
Confidence 12443222222 567889999999999999998852
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA--LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~--ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+...|..+..+|.+.|++++|+..|+.... +.| +...|..+...|.+.|++++|+..|++....
T Consensus 680 ---~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 680 ---IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 233678899999999999999999999998865 345 5778999999999999999999999988543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-05 Score=92.91 Aligned_cols=142 Identities=18% Similarity=0.101 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.++...|++++|...+++++.+... ..+.......+...
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~----------------------------------~g~~~~~~~~~~~l- 537 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQ----------------------------------HDVYHYALWSLLQQ- 537 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----------------------------------hcchHHHHHHHHHH-
Confidence 4567899999999999999999999876421 00111112222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC---CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA---PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---- 313 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~---~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---- 313 (580)
|..++..|++++|...+.+++.+.... ..+....++..+|.++...|++++|...+.+++.+..
T Consensus 538 ---------a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 608 (903)
T PRK04841 538 ---------SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP 608 (903)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc
Confidence 889999999999999999999863221 1122345677889999999999999999999988632
Q ss_pred -CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 -SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 -~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
....++..+|.++...|++++|...++++..+.
T Consensus 609 ~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 609 QQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 246677789999999999999999999998773
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.2e-06 Score=86.28 Aligned_cols=130 Identities=18% Similarity=0.121 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
...+.-++|..+|+++-|...++...+++ ++..+.++. .
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---------------------------------------eD~~l~qLa-~- 171 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID---------------------------------------EDSILTQLA-E- 171 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS---------------------------------------CCHHHHHHH-H-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------------------------CcHHHHHHH-H-
Confidence 44556788999999999999888765431 122222221 1
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 241 KLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
+.+.+..| .+.+|.-.|++..+. .+..+.+++.++.|++.+|+|++|...+.+++..+|+++.+
T Consensus 172 ---------awv~l~~g~e~~~~A~y~f~El~~~-----~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 172 ---------AWVNLATGGEKYQDAFYIFEELSDK-----FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp ---------HHHHHHHTTTCCCHHHHHHHHHHCC-----S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred ---------HHHHHHhCchhHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 44444444 699999999997663 33467889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCL-HDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi-~~~~~al~l 345 (580)
+.+++.+...+|+..++. +.+..+...
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999995544 455555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=89.35 Aligned_cols=141 Identities=13% Similarity=0.051 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
+|-+||..|+.+|+|+.||.+-+.=+.++..-- |...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG-----------------------------------DrAa-------- 233 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG-----------------------------------DRAA-------- 233 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhh-----------------------------------hHHH--------
Confidence 466799999999999999999887777753200 0000
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------P 313 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P 313 (580)
+--..-..||++.-.|+|+.|+++|..++.+.. -.+....+..-|.+|.+|.-+.++..||.+..+=|.+- -
T Consensus 234 -eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri 312 (639)
T KOG1130|consen 234 -ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI 312 (639)
T ss_pred -HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000111229999999999999999999766511 11234456777889999999999999999999888763 2
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 314 SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 314 ~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.-..+++.+|.+|..+|..+.|+...+..+++
T Consensus 313 Ge~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 313 GELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45789999999999999999999999998877
|
|
| >KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-07 Score=91.86 Aligned_cols=57 Identities=25% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
-+..|+|.+|||.++++..+|.+|||++|++||||++.... +..+|+.|..||+.+-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e---------------------~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE---------------------SKKLFVKIATAYEILK 86 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch---------------------hhhhhhhhhccccccc
Confidence 36779999999999999999999999999999999987743 3488999999999543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.2e-07 Score=70.64 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+++.|+|++|+..|++++.. .|.+..+++.+|.||++.|++++|...+.+++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46889999999999999997 455899999999999999999999999999999999998888777654
|
... |
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.4e-07 Score=100.91 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=53.2
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||++|||.++++..+|+++||++++++|||++.. ..+...|+.|++||++ ++++..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---------------------~eAeekFqeINEAYEV-LSDP~K 59 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---------------------PDAASIFAEINEANDV-LSNPKK 59 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHH-hCCHHH
Confidence 589999999999999999999999999999999754 2456789999999995 566764
Q ss_pred HHHHH
Q 008039 476 EEAAE 480 (580)
Q Consensus 476 ~~~~~ 480 (580)
+..+.
T Consensus 60 Ra~YD 64 (871)
T TIGR03835 60 RANYD 64 (871)
T ss_pred HHHHh
Confidence 54444
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.3e-07 Score=88.17 Aligned_cols=67 Identities=22% Similarity=0.380 Sum_probs=56.5
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||.+|||.++++..+|+++||++++++|||+++... ..+...|+.|++||+ +++++.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~-------------------~~a~~~f~~i~~Ay~-vLsd~~ 64 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP-------------------KVAEEKFKEINEAYE-ILSDPE 64 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch-------------------hHHHHHHHHHHHHHH-HhhCHH
Confidence 568999999999999999999999999999999987632 147899999999999 677776
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 65 ~r~~yd~ 71 (237)
T COG2214 65 RRAEYDK 71 (237)
T ss_pred HHHHhhh
Confidence 5555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.6e-07 Score=73.47 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----C---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----E---PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----d---P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
|..+.+|+++|.+|..+|+|++|+.+|++++.+ . |....++.++|.++..+|++++|+..|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 446788999999999999999999999999966 1 2336789999999999999999999999998874
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=69.78 Aligned_cols=70 Identities=24% Similarity=0.287 Sum_probs=61.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
...++..++|++|+..+++++.+ .|..+.+++.+|.++..+|++.+|+.+++++++++|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 45788999999999999999997 45578899999999999999999999999999999999888776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00023 Score=66.24 Aligned_cols=127 Identities=28% Similarity=0.309 Sum_probs=101.6
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHH
Q 008039 166 GQ-ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLL 243 (580)
Q Consensus 166 G~-a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~ 243 (580)
+. ++...|+++.|+..|.+++.+. |. .......+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~---- 173 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELD--------------------------------------PELNELAEALLAL---- 173 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------CCccchHHHHHHh----
Confidence 44 8999999999999999985431 11 1111111111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+...+++..|+..+.+++... +. ....+.+++.++...+++..|+..+..++...|.....+..+
T Consensus 174 ------~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 242 (291)
T COG0457 174 ------GALLEALGRYEEALELLEKALKLN-----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242 (291)
T ss_pred ------hhHHHHhcCHHHHHHHHHHHHhhC-----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence 445788899999999999999972 23 467899999999999999999999999999999988888999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+...+.++++...+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 243 ALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99888888899999999999776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.9e-06 Score=76.13 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=90.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHH
Q 008039 38 EHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERV 114 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 114 (580)
..++...+...++..+.-.|++ ..+.+.+|.+++..|+|++|++.|+.++.. .++.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~------------------ 81 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDP------------------ 81 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCH------------------
Confidence 5788999988999999999999 577888999999999999999999996621 1100
Q ss_pred hhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 115 KLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 115 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
.+ .....+.|+.++...|++++|+..|+....
T Consensus 82 ------------------~l-----------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~------- 113 (145)
T PF09976_consen 82 ------------------EL-----------------------KPLARLRLARILLQQGQYDEALATLQQIPD------- 113 (145)
T ss_pred ------------------HH-----------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccC-------
Confidence 00 012466789999999999999998865210
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL 270 (580)
.+-......+ .|.+++..|++++|+..|++||
T Consensus 114 --------------------------------~~~~~~~~~~------------~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 --------------------------------EAFKALAAEL------------LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --------------------------------cchHHHHHHH------------HHHHHHHCCCHHHHHHHHHHhC
Confidence 0111112222 3999999999999999999985
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.9e-06 Score=90.29 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|..+...|++++|+..|++|+.++ + ++..|..+|.++...|++++|++.|.+|+.++|.++.-
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~-----p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE-----M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 667778899999999999999983 3 47899999999999999999999999999999998863
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=80.37 Aligned_cols=149 Identities=21% Similarity=0.281 Sum_probs=107.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~~~ 326 (580)
|..++..|+|++|+..|.+++.. .|. .+....+.+++|.+|++++++++|+..+++.|.++|++ ..+++.+|.++
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~-yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNR-YPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 99999999999999999999996 354 35566778999999999999999999999999999887 56799999987
Q ss_pred HhcCC------------------hhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 327 ETIRC------------------LPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 327 ~~lg~------------------~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
..+++ ..+|+..|+..++.+ |+... ..++..++..++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---------P~S~y-------------a~~A~~rl~~l~~~l 174 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---------PNSQY-------------TTDATKRLVFLKDRL 174 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---------cCChh-------------HHHHHHHHHHHHHHH
Confidence 66541 246778888887774 44322 123344445555555
Q ss_pred hcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 389 ASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 389 ~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
+..+-....||-..|-. ..-|.+ .+..+...|+-
T Consensus 175 a~~e~~ia~~Y~~~~~y----~AA~~r--~~~v~~~Yp~t 208 (243)
T PRK10866 175 AKYELSVAEYYTKRGAY----VAVVNR--VEQMLRDYPDT 208 (243)
T ss_pred HHHHHHHHHHHHHcCch----HHHHHH--HHHHHHHCCCC
Confidence 55444555666665432 223333 34567788885
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-05 Score=90.44 Aligned_cols=206 Identities=14% Similarity=0.018 Sum_probs=143.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 38 EHSEIASALSLLDAALALSPRLE-----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
..|++..|+..+.+++...|... .++...|.++...|++++|+..+++++...+... .
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g----~------------- 526 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD----V------------- 526 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc----c-------------
Confidence 46899999999999998655432 3566789999999999999999999663211100 0
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAA 192 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~ 192 (580)
.....|.+..+|.+++..|++++|...+++++.+....
T Consensus 527 ------------------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 527 ------------------------------------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred ------------------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 00112456778999999999999999999999874210
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008039 193 FRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD 271 (580)
Q Consensus 193 ~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~ 271 (580)
. .++ ........ ..|..++..|++++|...+.+++.
T Consensus 565 ~---------------------------------~~~~~~~~~~~~----------~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 565 H---------------------------------LEQLPMHEFLLR----------IRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred c---------------------------------cccccHHHHHHH----------HHHHHHHHhcCHHHHHHHHHHhHH
Confidence 0 000 00111111 128888899999999999999988
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---H--------------------------------
Q 008039 272 GRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---I-------------------------------- 316 (580)
Q Consensus 272 ~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~-------------------------------- 316 (580)
+...........++.++|.++...|++++|...+.+++.+.+.. .
T Consensus 602 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 602 VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 63222122345677789999999999999999988886652211 0
Q ss_pred ----------HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 ----------QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ----------~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+..+|.++...|++++|+..|++++.+
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00245677788888888888888888766
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=83.10 Aligned_cols=88 Identities=17% Similarity=0.090 Sum_probs=69.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL-LET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~-~~~ 328 (580)
|.++.-.++++.|+..|++|+.+ .|..+.+|+.+|..+.-.|+.++|+...+++++++|.-..+-...-.+ .+-
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 77777778888888888888887 345788899999999999999999999999999999887776655555 555
Q ss_pred cCChhHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHL 342 (580)
Q Consensus 329 lg~~~eAi~~~~~a 342 (580)
-.-.++|+..|-+-
T Consensus 420 ~~~~~~~~~~~~~~ 433 (458)
T PRK11906 420 PNPLKNNIKLYYKE 433 (458)
T ss_pred CCchhhhHHHHhhc
Confidence 66677887777544
|
|
| >PRK03578 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=83.23 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=54.4
Q ss_pred CccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
...+||.+|||++. .+..+|+++|++++.++|||+....... .+..+...+..|++||++| .
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~---------------e~~~a~~~s~~iN~AY~tL-~ 67 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDA---------------EKRVAMQWATRANEAYQTL-R 67 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHHh-C
Confidence 34799999999985 5789999999999999999997643322 4456777899999999965 5
Q ss_pred chhhHHHH
Q 008039 472 NIMDEEAA 479 (580)
Q Consensus 472 ~~~~~~~~ 479 (580)
++..+..+
T Consensus 68 ~p~~Ra~Y 75 (176)
T PRK03578 68 DPLKRARY 75 (176)
T ss_pred ChhhHHHH
Confidence 56544444
|
|
| >KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.7e-07 Score=93.42 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=58.1
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...|+|.+|||+.++++.+|||.||++|+..||||+.. ..|++-|+.++.||++| ++.
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---------------------~~A~Eafk~Lq~Afevi-g~~ 290 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---------------------PRAEEAFKKLQVAFEVI-GDS 290 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---------------------hhHHHHHHHHHHHHHHh-cch
Confidence 47899999999999999999999999999999999874 68899999999999955 555
Q ss_pred hhHHHHHHHHH
Q 008039 474 MDEEAAEKRRK 484 (580)
Q Consensus 474 ~~~~~~~~~~~ 484 (580)
..+..+....+
T Consensus 291 ~kR~eYd~e~~ 301 (490)
T KOG0720|consen 291 VKRKEYDLELK 301 (490)
T ss_pred hhhhHHHHHHH
Confidence 55555544433
|
|
| >PRK00294 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=82.91 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=56.1
Q ss_pred CccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
+..+||.+||+++. .+..+|+++||+++.++|||+..+.... ++..+...+..|++||++ ++
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~---------------e~~~a~~~s~~IN~AY~~-L~ 65 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPER---------------EQRLALERSASLNEAYQT-LK 65 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHH---------------HHHHHHHHHHHHHHHHHH-hC
Confidence 35689999999987 5689999999999999999997654332 456678889999999995 55
Q ss_pred chhhHHHHH
Q 008039 472 NIMDEEAAE 480 (580)
Q Consensus 472 ~~~~~~~~~ 480 (580)
+|..+..+-
T Consensus 66 ~p~~Ra~Yl 74 (173)
T PRK00294 66 SPPRRARYL 74 (173)
T ss_pred ChhhhHHHH
Confidence 565555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.6e-06 Score=92.75 Aligned_cols=194 Identities=14% Similarity=0.072 Sum_probs=154.1
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
-|...|-..|++|.+++|.+..+....+..+.....+++|.++|-.+- +.+
T Consensus 506 ~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~---qka-------------------------- 556 (1238)
T KOG1127|consen 506 DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA---QKA-------------------------- 556 (1238)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh---hhc--------------------------
Confidence 478899999999999999999999999999999999999999855522 110
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
+.+ ...|.|..+|..|...+++-+|+..|+.+++.+
T Consensus 557 ------------~a~----------------------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---------- 592 (1238)
T KOG1127|consen 557 ------------PAF----------------------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---------- 592 (1238)
T ss_pred ------------hHH----------------------HHHhhhhhccccccCccchhhHHHHHHHHhcCC----------
Confidence 011 012567779999999999999999999998763
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
|.+-++..-+ |.+|...|+|.-|+..|++|..+ .|
T Consensus 593 ----------------------------PkD~n~W~gL------------GeAY~~sGry~~AlKvF~kAs~L-----rP 627 (1238)
T KOG1127|consen 593 ----------------------------PKDYNLWLGL------------GEAYPESGRYSHALKVFTKASLL-----RP 627 (1238)
T ss_pred ----------------------------chhHHHHHHH------------HHHHHhcCceehHHHhhhhhHhc-----Cc
Confidence 4333443333 99999999999999999999998 34
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhh
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS-------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILR 351 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~-------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~ 351 (580)
...-.-+..+.....+|+|.+|+..+...|..-.. ..+.+.+.+..+...|-+..|+..+++.++...-++.
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 46666778899999999999999999999876544 3566677777777788888899999988877544443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.4e-05 Score=80.88 Aligned_cols=91 Identities=22% Similarity=0.121 Sum_probs=84.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
|.+++..|++..|...|.+|+++ .|.++.++..+|.+++... ...++...++++|.+||+++.+++.+|..+
T Consensus 163 g~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 163 GRAYMALGRASDALLAYRNALRL-----AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999998 4558899999998888765 367899999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
++.|+|.+|+..++..+++
T Consensus 238 fe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 238 FEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHcccHHHHHHHHHHHHhc
Confidence 9999999999999999887
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.6e-05 Score=75.73 Aligned_cols=207 Identities=14% Similarity=0.096 Sum_probs=139.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
...||..|+.+++-.+.++-... ..-.-.|-|++.+|.|++|++.|.-+.. .++.
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-----~~~~------------------- 89 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-----KDDA------------------- 89 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-----cCCC-------------------
Confidence 46789999999999998876555 3444489999999999999998887431 1111
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+ ...+.+|+-|+|.+|.+.+|...-.++-+-. .-.| -
T Consensus 90 --------------------------------------~---~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~p-L~~R-L 126 (557)
T KOG3785|consen 90 --------------------------------------P---AELGVNLACCKFYLGQYIEAKSIAEKAPKTP-LCIR-L 126 (557)
T ss_pred --------------------------------------C---cccchhHHHHHHHHHHHHHHHHHHhhCCCCh-HHHH-H
Confidence 0 0135668999999999999988765542110 0000 0
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLL-LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~-~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+..+. .+ ..|.+.+..+...+.+. +.....+...+..-.|++||+.|+++|.-
T Consensus 127 ----------lfhla------------hk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--- 180 (557)
T KOG3785|consen 127 ----------LFHLA------------HK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--- 180 (557)
T ss_pred ----------HHHHH------------HH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 00000 00 01334444444333332 22234467777888999999999999984
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+....+-.+++.||.++.-|+-+-+...--|.--|+.+-|...++..+..+=.-.-|....
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 33456677889999999999999999888889999999999888888777654444444333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=71.12 Aligned_cols=94 Identities=21% Similarity=0.115 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~ 324 (580)
+.|..+-..|+.++||.+|.+++.. ....+....++.++|.++..+|++++|+..+++++.-.|+ +......++.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA--GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3488999999999999999999995 2224456789999999999999999999999999999888 8888888999
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al 343 (580)
++..+|++++|+..+-.++
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999987764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0002 Score=70.65 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=111.4
Q ss_pred ccchhHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 008039 156 KEGQWRYL-VLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVS 234 (580)
Q Consensus 156 ~~~~~~~~-~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~ 234 (580)
.+.+|..+ ....+....|+.+.|..++++...- | |.+..+.
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----------------f----------------------p~S~RV~ 89 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----------------F----------------------PGSKRVG 89 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----------------C----------------------CCChhHH
Confidence 34456543 3456678889999999998875432 1 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
.+. |..+-..|+|++|++.|+..|+- +|.+..++-..-.+...+|+.-+||.....-++.-++
T Consensus 90 ~lk------------am~lEa~~~~~~A~e~y~~lL~d-----dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~ 152 (289)
T KOG3060|consen 90 KLK------------AMLLEATGNYKEAIEYYESLLED-----DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN 152 (289)
T ss_pred HHH------------HHHHHHhhchhhHHHHHHHHhcc-----CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC
Confidence 444 77888899999999999999994 3557888888888899999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+||..++.+|..+|+|+.|.-+|+.++-+
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-05 Score=70.76 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~ 326 (580)
|...++.|+|.+|++.|+....-- |. .+....+.+.++.+|++.|+|++|+..+++-|+++|+++ -+++.+|-++
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ry-P~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRY-PF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 999999999999999999988852 32 566788999999999999999999999999999999885 4799999999
Q ss_pred HhcCC---------------hhHHHHHHHHHHHHH
Q 008039 327 ETIRC---------------LPDCLHDLEHLKLLY 346 (580)
Q Consensus 327 ~~lg~---------------~~eAi~~~~~al~l~ 346 (580)
..+.. ...|..+|+++++-+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99887 889999999998874
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.8e-05 Score=78.14 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
....+|.++..++-++.+++.|+++++++.+ .+|.+. +..-+..+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~---------~~D~~L----------------------Elqvcv~L---- 168 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHN---------NDDAML----------------------ELQVCVSL---- 168 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc---------cCCcee----------------------eeehhhhH----
Confidence 4566899999999999999999999998643 222221 11222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---- 311 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---- 311 (580)
|..+-...||++|+-+..+|.++-.. -+..+...+++.++.++..+|+.-+|.++|+++.++
T Consensus 169 ---------gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 169 ---------GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred ---------HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 77788889999999999999886211 112345678899999999999999999999999876
Q ss_pred --CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 --EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 --dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.+...+.-+|.+|...|+.+.|..-|+.|...
T Consensus 240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3556778888999999999999999999999766
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.9e-05 Score=76.80 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=87.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~~~ 326 (580)
+..+++.|+|.+|...|..-|+.- |+ .++.+.++|.+|.+++.+|+|++|...|..++.-.|++ +++++.+|.++
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~Y-P~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKY-PN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 899999999999999999999952 43 67788999999999999999999999999999998877 57799999999
Q ss_pred HhcCChhHHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l~ 346 (580)
..+|+.++|...|+.+++-|
T Consensus 226 ~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 226 GRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999998774
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.2e-05 Score=77.70 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=88.8
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh---HHHHHH
Q 008039 161 RYLVLGQAC-CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES---ESVSQL 236 (580)
Q Consensus 161 ~~~~LG~a~-~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~---~~~~~l 236 (580)
.+|..+..+ +..|++++|+..|++.++.. |++ ..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--------------------------------------P~s~~a~~A~y~ 185 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--------------------------------------PDSTYQPNANYW 185 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------------------------------------cCCcchHHHHHH
Confidence 345566665 56799999999999988763 333 233333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+ |..++..|+|++|+..|.+++.. .|. .+....+++.+|.++..+|++++|+..|+++++..|+..
T Consensus 186 L------------G~~y~~~g~~~~A~~~f~~vv~~-yP~-s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 L------------GQLNYNKGKKDDAAYYFASVVKN-YPK-SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred H------------HHHHHHcCCHHHHHHHHHHHHHH-CCC-CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 3 99999999999999999999985 343 567899999999999999999999999999999999987
Q ss_pred HHHHH
Q 008039 317 QALDT 321 (580)
Q Consensus 317 ~A~~~ 321 (580)
.+-..
T Consensus 252 ~a~~A 256 (263)
T PRK10803 252 GAKQA 256 (263)
T ss_pred HHHHH
Confidence 65433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-05 Score=75.98 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
.+.+.-+.-+...|..+|.++.-|..+|.+|+.+|++.+|...|++++ ++.|+++
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~---------------------- 190 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNP---------------------- 190 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCH----------------------
Confidence 346677777888888888888888888888888888888888888855 4444332
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhh
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.++..+|.+++...+ ..++...|++++.+
T Consensus 191 ----------------------------------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-------- 222 (287)
T COG4235 191 ----------------------------------------EILLGLAEALYYQAGQQMTAKARALLRQALAL-------- 222 (287)
T ss_pred ----------------------------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------
Confidence 134455776665543 45677778887765
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
||.+-.+..++ |..+|..|+|.+|+..+...++.. |.
T Consensus 223 ------------------------------D~~~iral~lL------------A~~afe~g~~~~A~~~Wq~lL~~l-p~ 259 (287)
T COG4235 223 ------------------------------DPANIRALSLL------------AFAAFEQGDYAEAAAAWQMLLDLL-PA 259 (287)
T ss_pred ------------------------------CCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhcC-CC
Confidence 34445555555 778888888888888888888874 33
Q ss_pred CCcccH
Q 008039 277 PQGFLA 282 (580)
Q Consensus 277 ~~~~~a 282 (580)
+.|...
T Consensus 260 ~~~rr~ 265 (287)
T COG4235 260 DDPRRS 265 (287)
T ss_pred CCchHH
Confidence 344333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.3e-05 Score=85.47 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=52.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH---HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA---ECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a---~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
|.+++..|+|++|+.+|+++|++ +| .+. .+|+|+|.||..+|++++|+.++.+||++.
T Consensus 82 G~AL~~lGryeEAIa~f~rALeL-~P----d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 82 GLSLFSKGRVKDALAQFETALEL-NP----NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-CC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998 33 344 569999999999999999999999999983
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.5e-05 Score=82.39 Aligned_cols=145 Identities=11% Similarity=-0.021 Sum_probs=113.5
Q ss_pred chh--HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 008039 158 GQW--RYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES 232 (580)
Q Consensus 158 ~~~--~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~ 232 (580)
..| -+++.|...+..+. .+.|+.+|.+++... ..||+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----------------------------------~ldp~~a~ 296 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----------------------------------DIQTLKTE 296 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----------------------------------cCCcccHH
Confidence 456 67888988877766 456788888887221 13577777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 233 VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 233 ~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
+...+..+.....+. |..- ....-.+|+++-.+|+++ ++.++.++..+|.++...++++.|+..+++|+.++
T Consensus 297 a~~~lA~~h~~~~~~--g~~~-~~~~~~~a~~~A~rAvel-----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 297 CYCLLAECHMSLALH--GKSE-LELAAQKALELLDYVSDI-----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 776664322211111 1111 345668899999999998 45589999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 313 PSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 313 P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+++.+|+.+|.++...|+.++|+..++++++|
T Consensus 369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999888
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-06 Score=66.87 Aligned_cols=57 Identities=23% Similarity=0.221 Sum_probs=55.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|+..++|++|+..+++++.++|+++.+++.+|.++..+|+|++|+.+|++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999887
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.2e-05 Score=80.70 Aligned_cols=202 Identities=18% Similarity=0.135 Sum_probs=126.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
.|...+.+......+| +.+.|++|+.++..-..+.-.+ ...+.+|-|++.+++.++|+.++.- + +. +
T Consensus 42 ~pdd~~a~~cKvValI---q~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~~-~---~~--~--- 108 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALI---QLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLKG-L---DR--L--- 108 (652)
T ss_pred CCCcHhhHhhhHhhhh---hhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHhc-c---cc--c---
Confidence 3444555555556666 6899999986655533322222 2226899999999999999997662 1 00 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
+ .-...+.|++++++|+|++|
T Consensus 109 --------------------------------~---------------------------~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 109 --------------------------------D---------------------------DKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred --------------------------------c---------------------------hHHHHHHHHHHHHHhhHHHH
Confidence 0 01345679999999999999
Q ss_pred HHHHHHHHHHHHHhh---hhhhcccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 179 MVLLQTGKRLATAAF---RRESISLSDDSFPFSKFPVSNNHQT--PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAA 253 (580)
Q Consensus 179 i~~l~~al~l~~~~~---r~~~~~~~~d~~~~~~l~~~~~~~~--~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~ 253 (580)
+..|+...+-...+. ++-.+.... ...+. ....+. .| ......+|+. +-.+
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~~-----------a~l~~~~~q~v~~--v~-e~syel~yN~----------Ac~~ 185 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAVA-----------AALQVQLLQSVPE--VP-EDSYELLYNT----------ACIL 185 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHH-----------HhhhHHHHHhccC--CC-cchHHHHHHH----------HHHH
Confidence 999998754321110 000000000 00000 000011 11 1122334444 8899
Q ss_pred HHcCCHHHHHHHHHHHHhccC------CC----CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 254 LDAGLYSEAIRHFSKIVDGRR------GA----PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 254 ~~~g~y~eAi~~y~~AL~~~~------~~----~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
...|+|.+|++.+.+++.++. .. .......+...++.++..+|+..+|...|...|..+|.+.
T Consensus 186 i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 186 IENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 999999999999999966521 11 1122457788899999999999999999999999988664
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00011 Score=75.74 Aligned_cols=213 Identities=16% Similarity=0.112 Sum_probs=130.6
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPR-LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~-~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..+..| -.|.|..++..++ ....+|. .......+.++++.+|+++.++..+.. .+ . +...
T Consensus 7 ~vrn~f---y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~~-~-------~~l~ 67 (290)
T PF04733_consen 7 TVRNQF---YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-------SS-S-------PELQ 67 (290)
T ss_dssp HHHHHH---CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------TS-S-------CCCH
T ss_pred HHHHHH---HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------CC-C-------hhHH
Confidence 455556 5899999998888 4445553 345677899999999999998874432 00 0 0011
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhh----hccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGL----CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l----~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
.+ +.-+..+.... + +..++..+ .........+..+..|.+++..|++++|+..+.
T Consensus 68 av-~~la~y~~~~~---------~-----------~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~ 126 (290)
T PF04733_consen 68 AV-RLLAEYLSSPS---------D-----------KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLH 126 (290)
T ss_dssp HH-HHHHHHHCTST---------T-----------HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCT
T ss_pred HH-HHHHHHHhCcc---------c-----------hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 10 00011111100 0 11112111 111111112334567888999999999997654
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
++ ++-++..+. ..++++.++++.|.
T Consensus 127 ~~-------------------------------------------~~lE~~al~------------Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 127 KG-------------------------------------------GSLELLALA------------VQILLKMNRPDLAE 151 (290)
T ss_dssp TT-------------------------------------------TCHHHHHHH------------HHHHHHTT-HHHHH
T ss_pred cc-------------------------------------------CcccHHHHH------------HHHHHHcCCHHHHH
Confidence 32 112233332 56889999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHH--HcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYR--SSG--RIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~--~lg--~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..+...-+.+ .. .+..+++.++. ..| .+.+|.-.|+......+..+..+..+|.+++.+|+|++|...+
T Consensus 152 k~l~~~~~~~-----eD--~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 152 KELKNMQQID-----ED--SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHCCS-----CC--HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHhcC-----Cc--HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999988762 11 34455555444 445 6999999999988877889999999999999999999999999
Q ss_pred HHHH
Q 008039 340 EHLK 343 (580)
Q Consensus 340 ~~al 343 (580)
+.++
T Consensus 225 ~~al 228 (290)
T PF04733_consen 225 EEAL 228 (290)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9884
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7e-05 Score=69.80 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
..+.++.++..|-.++ ..|++++|..+|.-..-++|.++.++..+|.|+-.+++|++|+..|.-+. -+.++|+
T Consensus 33 s~~~le~iY~~Ay~~y---~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~---~l~~~dp- 105 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY---NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF---TLLKNDY- 105 (165)
T ss_pred CHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccCCC-
Confidence 3456777888888888 79999999999999999999999999999999999999999999998854 1222222
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...+..|+||+.+|+.+.|
T Consensus 106 -------------------------------------------------------------~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 106 -------------------------------------------------------------RPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred -------------------------------------------------------------CccchHHHHHHHhCCHHHH
Confidence 1256689999999999999
Q ss_pred HHHHHHHHH
Q 008039 179 MVLLQTGKR 187 (580)
Q Consensus 179 i~~l~~al~ 187 (580)
+..|+.++.
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998774
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.5e-05 Score=79.87 Aligned_cols=88 Identities=18% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
+..++..++..+|+..+.++|.. .|..+.++..-+..++..++++.|+..+.+++.+.|+..++|+.++.+|..+
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~-----~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKE-----NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 66777889999999999999985 4456899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|+|++|+..++.+
T Consensus 282 ~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 282 GDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHhcC
Confidence 9999999888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.4e-05 Score=81.81 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-+.|..+..+|+-++|......+++. |+.+.-|.-.+
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~--------------------------------------d~~S~vCwHv~---- 81 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRN--------------------------------------DLKSHVCWHVL---- 81 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhcc--------------------------------------CcccchhHHHH----
Confidence 345688999999999999988887753 35556666666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+-..++|++||.+|+.|+.+ .+.|..+|.-++....++++++.....-.+.++++|.+-.-|+.
T Consensus 82 --------gl~~R~dK~Y~eaiKcy~nAl~~-----~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 82 --------GLLQRSDKKYDEAIKCYRNALKI-----EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred --------HHHHhhhhhHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 88888999999999999999997 45589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++.-+|++..|+..++...+..
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988886663
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.4e-06 Score=86.56 Aligned_cols=63 Identities=19% Similarity=0.416 Sum_probs=54.7
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.--|.|.+||+..+.++.+|+++||++.+++||||.+...+. .|..-++.++.|.+||+.|++
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~---------------~rse~Ee~y~~ItkAY~~lTd 158 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNE---------------LRSEYEEKYKTITKAYGLLTD 158 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChh---------------HHHHHHHHHHHHHHHHHhhhh
Confidence 356899999999999999999999999999999998764433 567889999999999996555
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=5.4e-06 Score=91.46 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred ccchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..++|++|||.+++ +..+|+++||++++++||||+++ .+.|+.|++||++|.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------------------------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------------------------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------------------------HHHHHHHHHHHHHHhcH
Confidence 34799999999999 99999999999999999999532 45799999999976553
Q ss_pred h
Q 008039 473 I 473 (580)
Q Consensus 473 ~ 473 (580)
+
T Consensus 66 ~ 66 (647)
T PHA02624 66 V 66 (647)
T ss_pred H
Confidence 3
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=83.70 Aligned_cols=47 Identities=2% Similarity=-0.168 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..|++++|..+|++... .+...|..+...|...|++++|++.|++..
T Consensus 335 k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 335 SLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred hcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46889999999998643 345678888999999999999999988743
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=66.01 Aligned_cols=63 Identities=22% Similarity=0.246 Sum_probs=53.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.|..++..|+|++|+.+|.+++++.. +...+..+.+++|+|.++..+|++++|+..+++++++
T Consensus 11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 39999999999999999999998721 2223456899999999999999999999999999986
|
... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-05 Score=66.57 Aligned_cols=96 Identities=23% Similarity=0.281 Sum_probs=78.9
Q ss_pred HHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 34 IATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 34 ~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
+...+.|+.+.|++.|.++|.+.|..+.+|.+||.++...|+.++|++++.+++ +++++..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al---eLag~~t---------------- 111 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL---ELAGDQT---------------- 111 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH---HhcCccc----------------
Confidence 334478999999999999999999999999999999999999999999999966 2322111
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
+ ..--+|...|.+|..+|+.+.|...|..+.+|.+
T Consensus 112 ------------------r------------------------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 112 ------------------R------------------------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred ------------------h------------------------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 0 0012577789999999999999999999998843
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=64.40 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+|.+|.++-.+|+.++|+.+|++++.... ++......++..
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL-------------------------------------~~~~~~~a~i~l- 44 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGL-------------------------------------SGADRRRALIQL- 44 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------------------------CchHHHHHHHHH-
Confidence 467789999999999999999999986410 111222233333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
|..+...|++++|+..+++++.. -|. .+.+..+...++.++..+|++++|+..+-.++.
T Consensus 45 ---------astlr~LG~~deA~~~L~~~~~~-~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 45 ---------ASTLRNLGRYDEALALLEEALEE-FPD-DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHH-CCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999984 232 344777888899999999999999999998886
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.6e-05 Score=84.91 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhc
Q 008039 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS---GRIAESIADCNKTLAL 311 (580)
Q Consensus 235 ~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l---g~~~eAl~~~~~Al~l 311 (580)
..+.....++..+++||..|-.+.+..||.+|.+++.. .|....+|.||+.++++. |+.-.|+.||..|+++
T Consensus 366 ~~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~-----~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl 440 (758)
T KOG1310|consen 366 RFYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY-----VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL 440 (758)
T ss_pred chhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh-----ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC
Confidence 35566677888899999999999999999999999996 566899999999999985 5778899999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
||...+||++++.++..++++.+|+.+...++..
T Consensus 441 n~s~~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 9999999999999999999999999998877544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0028 Score=58.83 Aligned_cols=192 Identities=28% Similarity=0.317 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 39 HSEIASALSLLDAALALSPRL--ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~--~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
.+.+..++..+..++...+.. .......+..+...+.+..++..+...+.. ..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------------------------ 90 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-EL------------------------ 90 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hh------------------------
Confidence 467888999999999999984 788888999999999999999988874421 00
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.+ .....++.+|..+...+.+..++..+..++...
T Consensus 91 -~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 125 (291)
T COG0457 91 -LP-------------------------------------NLAEALLNLGLLLEALGKYEEALELLEKALALD------- 125 (291)
T ss_pred -cc-------------------------------------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC-------
Confidence 00 001246678899999999999999999877542
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI-AALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~-~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
+......... +. .++..|+++.|+..|.+++.. .+
T Consensus 126 -------------------------------~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~~~~~~~-~~ 161 (291)
T COG0457 126 -------------------------------PDPDLAEALL------------ALGALYELGDYEEALELYEKALEL-DP 161 (291)
T ss_pred -------------------------------CCcchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhc-CC
Confidence 1111111111 33 789999999999999999884 22
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS-CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~-~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
. .......+..++..+...+++..++..+.+++...+. ....+..++.++...++++.|+..+..++..
T Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 162 E-LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred C-ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 1 1236677778888899999999999999999999999 7999999999999999999999999999877
|
|
| >KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.2e-06 Score=83.95 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=56.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||++|||.++++..+|++||++++++||||++... . ..++..|+.|.+||+ +++++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~------------------~~~~~~~~~~~ea~~-~ls~~~ 61 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-K------------------EVAEAKFKEIAEAYE-VLSDPK 61 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-h------------------hhHHHHHhhhhcccc-ccCCHH
Confidence 46899999999999999999999999999999996654 2 355568999999999 788887
Q ss_pred hHHHHHHH
Q 008039 475 DEEAAEKR 482 (580)
Q Consensus 475 ~~~~~~~~ 482 (580)
++..+...
T Consensus 62 kr~~~d~~ 69 (306)
T KOG0714|consen 62 KRKIYDQY 69 (306)
T ss_pred Hhhhcccc
Confidence 66665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0031 Score=62.82 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
.+.+++.+|...+ ..|+|.+|+..|+++....|.+ ..+....+-+++..++|++|+...+++|. +-|.++
T Consensus 33 p~~~LY~~g~~~L---~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~---lyP~~~- 105 (254)
T COG4105 33 PASELYNEGLTEL---QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR---LYPTHP- 105 (254)
T ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCCCC-
Confidence 6788999998877 7899999999999999987754 57888999999999999999999999773 222211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC----
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL---- 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~---- 174 (580)
.-.|++|+.|.+++..=+
T Consensus 106 ----------------------------------------------------------n~dY~~YlkgLs~~~~i~~~~r 127 (254)
T COG4105 106 ----------------------------------------------------------NADYAYYLKGLSYFFQIDDVTR 127 (254)
T ss_pred ----------------------------------------------------------ChhHHHHHHHHHHhccCCcccc
Confidence 012577888888765422
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH--HHH
Q 008039 175 ----MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR--RRT 248 (580)
Q Consensus 175 ----~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~--~k~ 248 (580)
...|+..|++.++--| ++ +--..+...+..++..+. -..
T Consensus 128 Dq~~~~~A~~~f~~~i~ryP------------nS-----------------------~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYP------------NS-----------------------RYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCC------------CC-----------------------cchhhHHHHHHHHHHHHHHHHHH
Confidence 3355555665553310 00 011222222223333333 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
-|+-+++.|.|..|+.-++..++- ....+.....+..+..+|..+|-.++|-. ..++|..|+.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~-~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKK-TAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHH-HHHHHHhcCCC
Confidence 478888999999999999999884 32344566778888889999988887755 55667666443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0026 Score=66.47 Aligned_cols=257 Identities=17% Similarity=0.106 Sum_probs=168.5
Q ss_pred cccc-chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 14 HWWL-SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 14 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
+|+. +-+.+...++.+|..-+ ..|||..|..++.++-+..+....++..=|++--++|+++.+=..+.++. +.
T Consensus 74 ~w~~~rKrrra~~~~~egl~~l---~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaa---e~ 147 (400)
T COG3071 74 GWFSRRKRRRARKALNEGLLKL---FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAA---EL 147 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHh---cc
Confidence 7766 23336677777774444 69999999999999999999999999999999999999999988887744 33
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
++++.-+ ....+++++-..+|+.. -...|...+..++.... .....-++|++.
T Consensus 148 ~~~~~l~---------v~ltrarlll~~~d~~a----------------A~~~v~~ll~~~pr~~~--vlrLa~r~y~~~ 200 (400)
T COG3071 148 AGDDTLA---------VELTRARLLLNRRDYPA----------------ARENVDQLLEMTPRHPE--VLRLALRAYIRL 200 (400)
T ss_pred CCCchHH---------HHHHHHHHHHhCCCchh----------------HHHHHHHHHHhCcCChH--HHHHHHHHHHHh
Confidence 3332211 12344444433322111 01123333333333322 233457899999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH--HHHHHHH------
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL--SHIKLLL------ 244 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll--~~~k~~~------ 244 (580)
|++.+....+.+..+-. .-.+++.......- ..+.+..
T Consensus 201 g~~~~ll~~l~~L~ka~----------------------------------~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 201 GAWQALLAILPKLRKAG----------------------------------LLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred ccHHHHHHHHHHHHHcc----------------------------------CCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999998887654320 00112222221111 0000000
Q ss_pred H-----------HH-------HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 245 R-----------RR-------TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 245 ~-----------~k-------~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
. .+ .-+.-+...|++++|.+...++++-. ....+. +=.-....+++..=+...+
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~L~--~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDPRLC--RLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cChhHH--HHHhhcCCCCchHHHHHHH
Confidence 0 00 12455677899999999999999841 122221 2233456788888999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+...|+++..+..+|.++.+.+.|.+|-..|+.++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999776
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=61.52 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=47.2
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..|++.+|+..|.+++..+|.+..++..+|.||+..|++++|...+++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999966
|
... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3e-05 Score=52.64 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00065 Score=62.03 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.-|...+..|++++|++.|+....--| . .|-.. ...+..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP---------------------~--------------g~ya~--qAqL~l- 53 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYP---------------------F--------------GEYAE--QAQLDL- 53 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---------------------C--------------CcccH--HHHHHH-
Confidence 467789999999999999999998653210 0 01112 223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC---------------hHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR---------------IAESIADC 305 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~---------------~~eAl~~~ 305 (580)
|.++|+.|+|++|+..|++-|+++ |. +|.-.-+++.+|.+++.+.. ...|+.+|
T Consensus 54 ---------~yayy~~~~y~~A~a~~~rFirLh-P~-hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f 122 (142)
T PF13512_consen 54 ---------AYAYYKQGDYEEAIAAYDRFIRLH-PT-HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDF 122 (142)
T ss_pred ---------HHHHHHccCHHHHHHHHHHHHHhC-CC-CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHH
Confidence 999999999999999999999985 54 56677899999999999987 88999999
Q ss_pred HHHHhcCCCcHHH
Q 008039 306 NKTLALEPSCIQA 318 (580)
Q Consensus 306 ~~Al~ldP~~~~A 318 (580)
...|..-|+..-+
T Consensus 123 ~~lv~~yP~S~ya 135 (142)
T PF13512_consen 123 EQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHCcCChhH
Confidence 9999999988654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0035 Score=62.49 Aligned_cols=246 Identities=14% Similarity=0.063 Sum_probs=148.2
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
-..|..+ -.|.|..++....+.-... ........++++|+.+|.|...+...... . +.
T Consensus 13 F~iRn~f---Y~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~-------~-----------~~ 70 (299)
T KOG3081|consen 13 FNIRNYF---YLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEG-------K-----------AT 70 (299)
T ss_pred HHHHHHH---HhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccc-------c-----------CC
Confidence 3445545 4799999888777765554 77888899999999999999887532220 0 00
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhh-----hccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGL-----CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l-----~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
. ...++++..- +.....+|..+..+ ..+......|.. .-|.+|++-|++++|+..+
T Consensus 71 ~--lqAvr~~a~~----------------~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l-~aa~i~~~~~~~deAl~~~ 131 (299)
T KOG3081|consen 71 P--LQAVRLLAEY----------------LELESNKKSILASLYELVADSTDGSNLIDLL-LAAIIYMHDGDFDEALKAL 131 (299)
T ss_pred h--HHHHHHHHHH----------------hhCcchhHHHHHHHHHHHHhhccchhHHHHH-HhhHHhhcCCChHHHHHHH
Confidence 0 0011111100 00000011111111 122233334543 3478899999999999998
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHH----H
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL---RRRTAAIAAL----D 255 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~---~~k~~G~~~~----~ 255 (580)
.....|...+..-.. +..+ -..+.+...++.+.... .+...+.++. .
T Consensus 132 ~~~~~lE~~Al~VqI---------~lk~-----------------~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 132 HLGENLEAAALNVQI---------LLKM-----------------HRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hccchHHHHHHHHHH---------HHHH-----------------HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 775544322111000 0000 00011111111111110 1112233333 3
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.+.+.+|.-.|++.-+- .+..+.+++..+.|++.+|+|++|......+|.-++++++.+.++-.+-..+|.-.++
T Consensus 186 gek~qdAfyifeE~s~k-----~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-----TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred chhhhhHHHHHHHHhcc-----cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHH
Confidence 45789999999887763 2336788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
...+-.-+..
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 8877655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=70.61 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
...++.++...++..+|+..+.++++.. |.+......
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~--------------------------------------p~d~~LL~~----- 239 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKEN--------------------------------------PQDSELLNL----- 239 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH-----
Confidence 4568999999999999999999988542 333222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.+..+++.++|+.|+...++++.+ .|.....|+.++.||..+|+|+.|+..++.+-
T Consensus 240 -------Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 240 -------QAEFLLSKKKYELALEIAKKAVEL-----SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -------HHHHHHhcCCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 288999999999999999999997 56688999999999999999999998877543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00043 Score=69.64 Aligned_cols=134 Identities=16% Similarity=0.092 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+.+||-||++..++..|..+|++.-.+. |.......++
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------------------------------------P~~~qYrlY~---- 84 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLH--------------------------------------PELEQYRLYQ---- 84 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC--------------------------------------hHHHHHHHHH----
Confidence 5678999999999999999999987764 3333333333
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------ccC-----------CCCCcccHHHHHHHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVD----------------GRR-----------GAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~----------------~~~-----------~~~~~~~a~~~~nra~a~~~ 294 (580)
+..+++.+.|.+|+.......+ ..+ ..+....+....|.|-..++
T Consensus 85 --------AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 85 --------AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK 156 (459)
T ss_pred --------HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeec
Confidence 5556666666666654433221 100 00112357788899999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-|+|++|+.-|+.|++..--++-.-++.|-++...++|+.|+......++-
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 999999999999999998888888899999999999999999888877654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.7e-05 Score=54.06 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
.+++.+|.+|..+|++++|+..|+++|+.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 4688999999999999999999999999999999999998863
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00061 Score=70.22 Aligned_cols=218 Identities=18% Similarity=0.133 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+..+.+..+..|+ ...+++.||....+.|..-.+.. ..+-..+.++..+|+|++++..---.| ..+.+
T Consensus 5 q~k~q~~~g~~Ly---~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi---~~a~~--- 75 (518)
T KOG1941|consen 5 QTKKQIEKGLQLY---QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQI---DTARE--- 75 (518)
T ss_pred hhHHHHHHHHhHh---cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHH---HHHHH---
Confidence 3445677787887 67889999999988887554333 234446788899999998886422222 11000
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
+. |..| ...+|.+|+..+-.+-++.++
T Consensus 76 ------------------~~------------ds~~-----------------------~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 76 ------------------LE------------DSDF-----------------------LLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred ------------------HH------------HHHH-----------------------HHHHHHHHHHHHHHHHHhhhH
Confidence 00 0011 123678889999888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+.+-...+.+. . +-+..+|. ...+.. |+++...+.
T Consensus 103 ~~y~k~~l~lp----------------------g---------t~~~~~~g----q~~l~~----------~~Ahlgls~ 137 (518)
T KOG1941|consen 103 ISYCKTCLGLP----------------------G---------TRAGQLGG----QVSLSM----------GNAHLGLSV 137 (518)
T ss_pred HHHHHHHhcCC----------------------C---------CCcccccc----hhhhhH----------HHHhhhHHH
Confidence 88777666441 0 00011121 122222 999999999
Q ss_pred HHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----------IQALDTRALLLE 327 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----------~~A~~~ra~~~~ 327 (580)
|+.+++.|+.|+.+...+ +....-.++..+|..|..+.++++|+-+..+|.++--++ .-+++.++.++.
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 999999999999973222 123345788999999999999999999999999874332 356789999999
Q ss_pred hcCChhHHHHHHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 328 ~lg~~~eAi~~~~~al~l~ 346 (580)
.+|...+|.+..+.+.+|.
T Consensus 218 ~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HhcccccHHHHHHHHHHHH
Confidence 9999999999999998884
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.4e-05 Score=52.25 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|++||+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999986
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.002 Score=61.09 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=85.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~ 325 (580)
..|+.+.+.|+|.||..+|.+++.- + ....+.++..++.+.+.++++..|...++...+.+|.. ++.+...|.+
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG--~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSG--I--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhcc--c--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 3399999999999999999999985 2 44478889999999999999999999999999999865 7788999999
Q ss_pred HHhcCChhHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~ 346 (580)
|..+|.+.+|...|+.++..+
T Consensus 170 laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhC
Confidence 999999999999999998883
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=58.74 Aligned_cols=103 Identities=21% Similarity=0.113 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------------cccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------------GFLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------------~~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
..+...|......|+...++..+.+++.+-....- .....++..++..+...|++++|+..|.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34444577788899999999999999997321100 1124566777888889999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++.+||.+..+|..+-.+|..+|++.+|+..|+++....
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997774
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00039 Score=65.64 Aligned_cols=62 Identities=13% Similarity=0.248 Sum_probs=55.2
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
-+.+.|.+|.|.++.+.++|++-||++++..||||+++.. ..|..-|-.|.+||..|.++.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~-------------------~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA-------------------ERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH-------------------HHHHHHHHHHHHHHHHHhCHH
Confidence 4778999999999999999999999999999999998854 567888999999999777665
Q ss_pred h
Q 008039 474 M 474 (580)
Q Consensus 474 ~ 474 (580)
.
T Consensus 112 ~ 112 (250)
T KOG1150|consen 112 I 112 (250)
T ss_pred H
Confidence 4
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00015 Score=70.87 Aligned_cols=94 Identities=15% Similarity=0.174 Sum_probs=77.7
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
.++..++ ....|..|+..|.+||-++|..+.++.++|.|++++.+++.+.++|++++ ++.|+
T Consensus 15 E~gnk~f---~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N------------ 76 (284)
T KOG4642|consen 15 EQGNKCF---IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPN------------ 76 (284)
T ss_pred hcccccc---chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChH------------
Confidence 3444455 45679999999999999999999999999999999999999999999966 22211
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
+ +-..+.||.+......+++||..|+++..
T Consensus 77 --------------------------------------~------------vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 77 --------------------------------------L------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred --------------------------------------H------------HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 0 11467799999999999999999999987
Q ss_pred HH
Q 008039 188 LA 189 (580)
Q Consensus 188 l~ 189 (580)
+.
T Consensus 107 l~ 108 (284)
T KOG4642|consen 107 LL 108 (284)
T ss_pred HH
Confidence 63
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.002 Score=63.37 Aligned_cols=124 Identities=21% Similarity=0.137 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|.-+|.+|++.+|...|+.++-.-....- +--|....+..+-+.+
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~l------------------------------kEkP~e~eW~eLdk~~ 229 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQL------------------------------KEKPGEPEWLELDKMI 229 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHh------------------------------ccCCCChHHHHHHHhh
Confidence 3556799999999999999999998754221100 0113333443333221
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.-+ +.+-..+++..|+|-+++++.+..|.. .|.+..+|+.||.++...-+..+|.+|+..+|+++|.-..+..
T Consensus 230 tpL--llNy~QC~L~~~e~yevleh~seiL~~-----~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 230 TPL--LLNYCQCLLKKEEYYEVLEHCSEILRH-----HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred hHH--HHhHHHHHhhHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 111 123377889999999999999999996 5669999999999999999999999999999999998766644
Q ss_pred H
Q 008039 321 T 321 (580)
Q Consensus 321 ~ 321 (580)
+
T Consensus 303 r 303 (329)
T KOG0545|consen 303 R 303 (329)
T ss_pred H
Confidence 3
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=56.96 Aligned_cols=99 Identities=25% Similarity=0.311 Sum_probs=78.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC--C-----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hcCC
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR--G-----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTL-------ALEP 313 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~--~-----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al-------~ldP 313 (580)
..|...+..|-|++|...|.+|+++.. | +...+.+.+|..++.++..+|+|++++...+++| +++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q 93 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ 93 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence 347777889999999999999998731 1 1234568889999999999999999988888887 4454
Q ss_pred C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 S----CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ~----~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+ ++.+.+.+|.++..+|+.++|+..|+.+.+..
T Consensus 94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4 46778999999999999999999999998873
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00022 Score=67.72 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=55.8
Q ss_pred cchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 396 VDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 396 ~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.|||.++|++.. .....+++.|+.+..++|||+...... +++.-+...-..|++||.+ +.+|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~---------------~eq~~a~~~ss~iN~AY~t-LkdP 65 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSA---------------QEQRLAMQKSAEVNDALQI-LKDP 65 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCH---------------HHHHHHHHHHHHHHHHHHH-HCCh
Confidence 489999999876 788999999999999999999766443 2566788899999999996 5667
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
+.+..+-
T Consensus 66 l~RA~YL 72 (173)
T PRK01773 66 ILRAEAI 72 (173)
T ss_pred HHHHHHH
Confidence 6555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00021 Score=68.91 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
.++|+.+-..|-+.-|.-.|++++.+ .|..+.+++.+|.-+...|+|+.|.+.|+..+++||.+--++.+||..+
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai-----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAI-----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhc-----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34588888888899999999999998 5668999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~ 344 (580)
.--|+|.-|..++.+..+
T Consensus 144 YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred eecCchHhhHHHHHHHHh
Confidence 999999999999988743
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00077 Score=65.16 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=104.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++-.|..|-.+|...-|.-.|.+++.+ .|+...+.+++
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai--------------------------------------~P~m~~vfNyL---- 105 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAI--------------------------------------RPDMPEVFNYL---- 105 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhc--------------------------------------CCCcHHHHHHH----
Confidence 555677777777777777777766654 37778888888
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
|.-+...|+|+.|.+.|+-.+++ +|..--++.|||.++.--|+|.-|.+++.+--.-||++
T Consensus 106 --------G~Yl~~a~~fdaa~eaFds~~EL-----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 106 --------GIYLTQAGNFDAAYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred --------HHHHHhcccchHHHHHhhhHhcc-----CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999998 33456778999999999999999999988877777754
Q ss_pred ----------------------------------------------------------------HHHHHHHHHHHHhcCC
Q 008039 316 ----------------------------------------------------------------IQALDTRALLLETIRC 331 (580)
Q Consensus 316 ----------------------------------------------------------------~~A~~~ra~~~~~lg~ 331 (580)
.++|+.+|.-+..+|+
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 5677888999999999
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
.++|...|+-++.-
T Consensus 253 ~~~A~~LfKLaian 266 (297)
T COG4785 253 LDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988877643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=48.36 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+.+++++|.++..+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0092 Score=61.61 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|||++|+..|.-+..-+--++..+.++|-|.+.+|.|.+|-....++- ..+ + ..+|+
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-------k~p-----------L---~~RLl 127 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-------KTP-----------L---CIRLL 127 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-------CCh-----------H---HHHHH
Confidence 35999999999999999888888999999999999999999998766632 111 0 00010
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh---
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR--- 194 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r--- 194 (580)
=.-.+ -..| +|+++. +..+- .+...--+.|+.+.+..-.+.+||..|.+.+.-++.-..
T Consensus 128 fhlah---------------klnd-Ek~~~~-fh~~L-qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNV 189 (557)
T KOG3785|consen 128 FHLAH---------------KLND-EKRILT-FHSSL-QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNV 189 (557)
T ss_pred HHHHH---------------HhCc-HHHHHH-HHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHH
Confidence 00000 0000 111111 10000 011112334677788888899999999988754322100
Q ss_pred hhhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--HHHHHHH--HHHHHHHHcC--CHHHHHHHHH
Q 008039 195 RESISLS-DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--KLLLRRR--TAAIAALDAG--LYSEAIRHFS 267 (580)
Q Consensus 195 ~~~~~~~-~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k~~~~~k--~~G~~~~~~g--~y~eAi~~y~ 267 (580)
.-.+|.. .|.+ .-++.....-++.-||+..+..+.... +...... .+-..+...+ .|+.+.....
T Consensus 190 y~ALCyyKlDYy--------dvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 190 YMALCYYKLDYY--------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred HHHHHHHhcchh--------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 0000000 0000 000000000011225555554443211 1110000 0011111111 1333333222
Q ss_pred H----------HHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 268 K----------IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 268 ~----------AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
. ||+.. |.--..-+.+..|+..-|++.++..+|+..|.. ++|..+.-|...|.++..+|+--...+
T Consensus 262 HNLVvFrngEgALqVL-P~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVL-PSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred cCeEEEeCCccHHHhc-hHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 1 22221 111122467889999999999999999998864 899999999999999999999877776
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.+.-|.+.
T Consensus 338 HlKiAqqf 345 (557)
T KOG3785|consen 338 HLKIAQQF 345 (557)
T ss_pred HHHHHHHH
Confidence 66666443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=62.46 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR----------IAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~----------~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
|+.|.+.|...... .|.++..++|=|.+++.+.+ +++|+.-+++||.++|+..+|++.+|.+|..
T Consensus 7 FE~ark~aea~y~~-----nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAK-----NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 57888888888886 45578999999999887744 5678999999999999999999999999998
Q ss_pred cCC----hhHHHHHHHHHHHHHHHhh
Q 008039 329 IRC----LPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 329 lg~----~~eAi~~~~~al~l~~~~l 350 (580)
++. ..+|...|++|.+.+..+.
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv 107 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAV 107 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 665 2344444444444443333
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0031 Score=63.30 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.|..+.-++..|+|.+|...|..-++--|. .+-..++..++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-----------------------------------s~~~~nA~yWL---- 184 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-----------------------------------STYTPNAYYWL---- 184 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------------------------CcccchhHHHH----
Confidence 677888999999999999999987754210 01224455555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+|.+|+|.+|...|..++.- -|. .+..++.++.+|.|...+|+.++|-..+.++++--|+...|...
T Consensus 185 --------Ge~~y~qg~y~~Aa~~f~~~~k~-~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 185 --------GESLYAQGDYEDAAYIFARVVKD-YPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred --------HHHHHhcccchHHHHHHHHHHHh-CCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999994 233 56678999999999999999999999999999999999887665
Q ss_pred HHH
Q 008039 322 RAL 324 (580)
Q Consensus 322 ra~ 324 (580)
+..
T Consensus 255 k~~ 257 (262)
T COG1729 255 KVA 257 (262)
T ss_pred HHH
Confidence 543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=49.89 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHH
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVAD 81 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~ 81 (580)
+|.+||+++|+++.+|.++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999973
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00026 Score=75.62 Aligned_cols=96 Identities=21% Similarity=0.253 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
+-.++.+++ ..++|..|+.+|.+||+++|+++.++-+|+.+++..+.|..|+.++.++| +.+|..
T Consensus 7 ~k~ean~~l---~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai---e~dP~~--------- 71 (476)
T KOG0376|consen 7 LKNEANEAL---KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI---ELDPTY--------- 71 (476)
T ss_pred hhhHHhhhc---ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh---hcCchh---------
Confidence 345666666 67899999999999999999999999999999999999999999999966 222210
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
.-.|+..|.++..+|.+.+|...|+..
T Consensus 72 -----------------------------------------------------~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 72 -----------------------------------------------------IKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred -----------------------------------------------------hheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 124777899999999999999999998
Q ss_pred HHHH
Q 008039 186 KRLA 189 (580)
Q Consensus 186 l~l~ 189 (580)
..+.
T Consensus 99 ~~l~ 102 (476)
T KOG0376|consen 99 KKLA 102 (476)
T ss_pred hhcC
Confidence 7663
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0074 Score=60.09 Aligned_cols=135 Identities=15% Similarity=0.082 Sum_probs=106.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
.+.+..++..+|+|.-.+..+.+.++-+ +|.......-+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~-------------------------------------~e~~p~L~s~L---- 218 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYY-------------------------------------PEQEPQLLSGL---- 218 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhC-------------------------------------CcccHHHHHHH----
Confidence 4556778888999999999999877542 12222222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|...++.||.+.|-..|+..-+.... +....+..++.|.+.+|...++|.+|...+++.+..||.++.+..
T Consensus 219 --------gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~N 290 (366)
T KOG2796|consen 219 --------GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANN 290 (366)
T ss_pred --------HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhc
Confidence 88999999999999988854332100 113346678889999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.|-|++-+|+..+|+...+.+++.
T Consensus 291 nKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 291 NKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999776
|
|
| >TIGR00714 hscB Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00048 Score=64.44 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 008039 408 CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAE 480 (580)
Q Consensus 408 a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~~~~~ 480 (580)
....+|+++|++++.++|||+....... .+..+...+..|++||++| ++|..+..+-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~---------------~~~~a~~~s~~iN~AY~~L-~~p~~Ra~yl 59 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQ---------------EQLAAVQQSTTLNQAYQTL-KDPLMRAEYM 59 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChh---------------hhHHHHHHHHHHHHHHHHh-CChhhhHHHH
Confidence 4567899999999999999996543321 3466888999999999965 5565444443
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.02 Score=57.17 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 231 ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 231 ~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
..+..++.. |...++.|+|.+|+..|....... |. .|....+...++.++++.+++++|+...++=|.
T Consensus 32 ~p~~~LY~~----------g~~~L~~gn~~~A~~~fe~l~~~~-p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 32 LPASELYNE----------GLTELQKGNYEEAIKYFEALDSRH-PF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred CCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHHcC-CC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345566666 999999999999999999998753 33 566788999999999999999999999999999
Q ss_pred cCCCcHH---HHHHHHHHHHhc-----CCh---hHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHH
Q 008039 311 LEPSCIQ---ALDTRALLLETI-----RCL---PDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTT 379 (580)
Q Consensus 311 ldP~~~~---A~~~ra~~~~~l-----g~~---~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~ 379 (580)
+.|+++. +++.+|.++... .|. .+|+..|+.++.- .|.. ++.. .+..
T Consensus 100 lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---------yPnS-------~Ya~------dA~~ 157 (254)
T COG4105 100 LYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---------YPNS-------RYAP------DAKA 157 (254)
T ss_pred hCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---------CCCC-------cchh------hHHH
Confidence 9988754 678888876643 222 4555666666544 2332 2221 2334
Q ss_pred HHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCC
Q 008039 380 KIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDK 428 (580)
Q Consensus 380 ~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk 428 (580)
++..++.+++..+.....||.--| +...-+.+ .+..++-+|+-
T Consensus 158 ~i~~~~d~LA~~Em~IaryY~kr~----~~~AA~nR--~~~v~e~y~~t 200 (254)
T COG4105 158 RIVKLNDALAGHEMAIARYYLKRG----AYVAAINR--FEEVLENYPDT 200 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----ChHHHHHH--HHHHHhccccc
Confidence 444444444444445566775443 33333332 34455567775
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0025 Score=60.25 Aligned_cols=47 Identities=28% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh---HHHHHHHHhhhh
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRF---KDVADMLQDYIP 88 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~---~eAi~~~~~~l~ 88 (580)
|+.|.+.+......+|.++..+..-|-+|+.|.++ .|+.+|++++|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAis 56 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAIS 56 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 78899999999999999999999999999998776 568888888774
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=58.84 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc-CCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA-NDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
++-+++..+=+ ....+..+.+++-+|+|.=.+.++.+.|. .+ +.++
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~---~~~e~~p------------------------ 212 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIK---YYPEQEP------------------------ 212 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHH---hCCcccH------------------------
Confidence 66677777755 45677789999999999999999998663 21 1111
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
+ ....||.+-...|+.+.|-..|++.-+-+..
T Consensus 213 -------------------------------------~-L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---------- 244 (366)
T KOG2796|consen 213 -------------------------------------Q-LLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---------- 244 (366)
T ss_pred -------------------------------------H-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----------
Confidence 0 1335799999999999999999865433100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
++.-.. ...-.+..+..+...++|.+|...|++++.. ++.+
T Consensus 245 ------------------------L~~~q~----------~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~-----D~~~ 285 (366)
T KOG2796|consen 245 ------------------------LDGLQG----------KIMVLMNSAFLHLGQNNFAEAHRFFTEILRM-----DPRN 285 (366)
T ss_pred ------------------------hhccch----------hHHHHhhhhhheecccchHHHHHHHhhcccc-----CCCc
Confidence 000001 1222344577888999999999999999996 3447
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLL 326 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~ 326 (580)
+.+-+|.|.|++-+|+..+|+...+.++..+|... ...+++-.+|
T Consensus 286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 88889999999999999999999999999999753 3344444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.014 Score=55.48 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
-.+.||.++..+|++.+|..+|++++.= |--.+...++..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG---------------------------------------~fA~d~a~lLgl- 130 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG---------------------------------------IFAHDAAMLLGL- 130 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc---------------------------------------ccCCCHHHHHHH-
Confidence 3567899999999999999999998731 111222334444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
+++.|..+++.+|...+++..+.. |... .+.-..-.|.++..+|++.+|...|+.++...|+ +.+..
T Consensus 131 ---------A~Aqfa~~~~A~a~~tLe~l~e~~-pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~ 197 (251)
T COG4700 131 ---------AQAQFAIQEFAAAQQTLEDLMEYN-PAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARI 197 (251)
T ss_pred ---------HHHHHhhccHHHHHHHHHHHhhcC-CccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHH
Confidence 899999999999999999999974 4222 2333445588999999999999999999999875 67788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..+..+.++|+.++|..-|..+.+
T Consensus 198 ~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 198 YYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHH
Confidence 889999999999999888776644
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=71.84 Aligned_cols=107 Identities=14% Similarity=0.064 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--C--------C----CCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR--G--------A----PQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~--------~----~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
.+......++.|+..|+.++|..|+..|.+++.... + + -......++.|.+.|-++++.+..|+..
T Consensus 218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~ 297 (372)
T KOG0546|consen 218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR 297 (372)
T ss_pred hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence 344556677889999999999999999999987632 0 1 1233457788999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+++.++...++|++++..+..+.++++|+.+++.+...
T Consensus 298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.069 Score=61.18 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
+.+++..|+...++.+...|+...+..++|-+++.+|+++||..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~ 68 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEA 68 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh
Confidence 678999999999999999999999999999999999999999976654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.036 Score=65.98 Aligned_cols=226 Identities=12% Similarity=0.020 Sum_probs=171.8
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcC
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHS 119 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 119 (580)
++..+-.+.|++.+.-+|+++..|..-=.-++.+++.++|.+..+++++.+...- ..+++-.|-+ +|.-
T Consensus 1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE----------eeEKLNiWiA-~lNl 1506 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE----------EEEKLNIWIA-YLNL 1506 (1710)
T ss_pred ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch----------hHHHHHHHHH-HHhH
Confidence 4344556789999999999999999888888999999999999999987652211 1122211111 1111
Q ss_pred CCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcc
Q 008039 120 GGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESIS 199 (580)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~ 199 (580)
.+ .+...+.=++++...|+.++.-. .|..|..+|-..+.+++|.++|+..++-- +
T Consensus 1507 En--------------~yG~eesl~kVFeRAcqycd~~~--V~~~L~~iy~k~ek~~~A~ell~~m~KKF----~----- 1561 (1710)
T KOG1070|consen 1507 EN--------------AYGTEESLKKVFERACQYCDAYT--VHLKLLGIYEKSEKNDEADELLRLMLKKF----G----- 1561 (1710)
T ss_pred HH--------------hhCcHHHHHHHHHHHHHhcchHH--HHHHHHHHHHHhhcchhHHHHHHHHHHHh----c-----
Confidence 00 01233445688888888887643 35667889999999999999999876531 0
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc
Q 008039 200 LSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG 279 (580)
Q Consensus 200 ~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~ 279 (580)
....++..+ |..++++.+-+.|-..+.+||... |. .
T Consensus 1562 -----------------------------q~~~vW~~y------------~~fLl~~ne~~aa~~lL~rAL~~l-Pk--~ 1597 (1710)
T KOG1070|consen 1562 -----------------------------QTRKVWIMY------------ADFLLRQNEAEAARELLKRALKSL-PK--Q 1597 (1710)
T ss_pred -----------------------------chhhHHHHH------------HHHHhcccHHHHHHHHHHHHHhhc-ch--h
Confidence 012222223 888999999999999999999963 32 3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....+...-|..-++.|+.+.+...|+..+.-+|.-.+.|.-....-.+.|+.+-....|++++.+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 367788888999999999999999999999999999999999999999999999999999999887
|
|
| >COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00071 Score=66.71 Aligned_cols=61 Identities=23% Similarity=0.351 Sum_probs=49.1
Q ss_pred ccchhhhhccc---CCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLR---RGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~---~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..|+|.+||+. ..+....|.+++++..++||||+.....+ ......|++|++||++| +
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~------------------~~~d~fFk~iqkA~evL-~ 102 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGN------------------KGCDEFFKLIQKAREVL-G 102 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCC------------------CCcHHHHHHHHHHHHHh-c
Confidence 47999999974 57788999999999999999999644333 25678899999999965 4
Q ss_pred chh
Q 008039 472 NIM 474 (580)
Q Consensus 472 ~~~ 474 (580)
|..
T Consensus 103 D~~ 105 (379)
T COG5269 103 DRK 105 (379)
T ss_pred cHH
Confidence 443
|
|
| >KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0025 Score=61.51 Aligned_cols=58 Identities=14% Similarity=0.303 Sum_probs=47.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...||.+|||..+|+..+++.+|..++.++|||..+... ....|..|.+||.-+++..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a---------------------daa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA---------------------DAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc---------------------cHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999865522 2356888899998555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0068 Score=65.33 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...-+.+-.+||+++|+++.+|.++|.=- -.-..||.++|++++..-+..-... ....
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s-----------------~~~~ 241 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKS-----------------QFLQ 241 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchh-----------------hhhh
Confidence 45778888999999999999999998887632 2335788888888774322210000 0000
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.. ... ...+...........-..||.|..++|+.++|++.++..++..+.
T Consensus 242 ~~----------g~~-------------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------- 291 (539)
T PF04184_consen 242 HH----------GHF-------------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------- 291 (539)
T ss_pred cc----------cch-------------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc-------
Confidence 00 000 000001111222334566899999999999999999998865210
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
-+...+...+ -..+...+.|.++-..+.+-=++ .-
T Consensus 292 -----------------------------~~~l~IrenL------------ie~LLelq~Yad~q~lL~kYdDi----~l 326 (539)
T PF04184_consen 292 -----------------------------LDNLNIRENL------------IEALLELQAYADVQALLAKYDDI----SL 326 (539)
T ss_pred -----------------------------cchhhHHHHH------------HHHHHhcCCHHHHHHHHHHhccc----cC
Confidence 1233344333 66778888888887766653221 12
Q ss_pred cccHHHHHHHHHHHHH-cCC---------------hHHHHHHHHHHHhcCCCcHHHHHHHH------HHHHhcCChhHHH
Q 008039 279 GFLAECYMHRAFAYRS-SGR---------------IAESIADCNKTLALEPSCIQALDTRA------LLLETIRCLPDCL 336 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~-lg~---------------~~eAl~~~~~Al~ldP~~~~A~~~ra------~~~~~lg~~~eAi 336 (580)
|..+.+.|..+....+ .++ -..|++...+|++.||.-++-+..+= .-+.+.|+ .||+
T Consensus 327 pkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAi 405 (539)
T PF04184_consen 327 PKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAI 405 (539)
T ss_pred CchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHH
Confidence 3456666666554433 111 13477889999999998877554432 23445565 7777
Q ss_pred HHHHHHHH
Q 008039 337 HDLEHLKL 344 (580)
Q Consensus 337 ~~~~~al~ 344 (580)
.+---.+.
T Consensus 406 aYAf~hL~ 413 (539)
T PF04184_consen 406 AYAFFHLQ 413 (539)
T ss_pred HHHHHHHH
Confidence 66554433
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=55.52 Aligned_cols=98 Identities=12% Similarity=0.014 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QALDTR 322 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~~~r 322 (580)
....+.+..++..|++++|+..+..++.. +.+..+.+.+-.++|.+.+.+|++++|+..++..- ++++. ...-.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHh
Confidence 33445688999999999999999999975 43345567788899999999999999999877643 23332 235678
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++...|+-++|...|+++++.
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHc
Confidence 99999999999999999999766
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00071 Score=69.48 Aligned_cols=106 Identities=24% Similarity=0.281 Sum_probs=82.8
Q ss_pred chhhhHHHHHHHHHH----HHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc
Q 008039 18 SNRKIVDKYIRDART----LIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA 93 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~----~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~ 93 (580)
.+.++.++-+..+.. .++....|++..|+++|..||.++|.++..|..||.+++.+++...||.+|..++ .++
T Consensus 102 s~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein 178 (377)
T KOG1308|consen 102 SNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EIN 178 (377)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh---ccC
Confidence 455666666655543 2222256999999999999999999999999999999999999999999999955 444
Q ss_pred CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC
Q 008039 94 NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG 173 (580)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG 173 (580)
|+.+. -|-..|.+...+|
T Consensus 179 ~Dsa~--------------------------------------------------------------~ykfrg~A~rllg 196 (377)
T KOG1308|consen 179 PDSAK--------------------------------------------------------------GYKFRGYAERLLG 196 (377)
T ss_pred ccccc--------------------------------------------------------------ccchhhHHHHHhh
Confidence 33221 1223488899999
Q ss_pred CHHHHHHHHHHHHHH
Q 008039 174 LMEDAMVLLQTGKRL 188 (580)
Q Consensus 174 ~~eeAi~~l~~al~l 188 (580)
++++|...|..++++
T Consensus 197 ~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 197 NWEEAAHDLALACKL 211 (377)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999877
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.35 Score=53.85 Aligned_cols=274 Identities=14% Similarity=0.163 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
=.+-++..|.+=|.++|.+.. .--..|...++.++|.+-|.++++.-+. .+.. ..|.-+++.+-..|++..
T Consensus 153 lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d~f----~sk~--gkSn~qlw~elcdlis~~ 223 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQDEF----VSKK--GKSNHQLWLELCDLISQN 223 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCchhh----hhhc--ccchhhHHHHHHHHHHhC
Confidence 356788889999999988743 3356788899999999999887732111 1110 113456778888888765
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hhhh--h
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATA--AFRR--E 196 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~--~~r~--~ 196 (580)
.+- .++ ....+-+=.|+.+-.|..+ ..|..|+.-|.+.|.+|.|-..|+++++--.. +|.. .
T Consensus 224 p~~------------~~s-lnvdaiiR~gi~rftDq~g-~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 224 PDK------------VQS-LNVDAIIRGGIRRFTDQLG-FLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD 289 (835)
T ss_pred cch------------hcc-cCHHHHHHhhcccCcHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence 321 111 1122334445555444433 23677999999999999999999998754210 0000 0
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHH------------------HHHHHHcC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ESESVSQLLSHIKLLLRRRTA------------------AIAALDAG 257 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~~~~~~ll~~~k~~~~~k~~------------------G~~~~~~g 257 (580)
.+.......+...++... +. . .++ +...+.-.+.....+...+.. -.+-+..|
T Consensus 290 ~Ya~FEE~~~~~~me~a~--~~--~----~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~ 361 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELAD--EE--S----GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEG 361 (835)
T ss_pred HHHHHHHHHHHHHHhhhh--hc--c----cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcC
Confidence 000000000001111000 00 0 001 222222222222222221100 01223468
Q ss_pred CHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~~~lg~~ 332 (580)
+..+-+..|++|+..-+|.. ......+|...|..|-..|+.+.|...+++|+..+=.. ...|..-|..=+...++
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~ 441 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENF 441 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhH
Confidence 89999999999998755532 23356799999999999999999999999999886433 56778888888888999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
+.|+...++|.-+
T Consensus 442 ~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 442 EAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhhhcC
Confidence 9999999888544
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.015 Score=59.68 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|--=|.-||+-.+|..|+.+|.+++.-.+. ||+-..+. +.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~-----------------------------------D~dlnavL-Y~NR-- 125 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCA-----------------------------------DPDLNAVL-YTNR-- 125 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCC-----------------------------------CccHHHHH-HhhH--
Confidence 444599999999999999999999976321 34333322 2233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
+.+.+-.|+|..||.-+++++.+ .|.+..+|+.-|.|++.+.++++|+.+|+..+.++-..-.+
T Consensus 126 --------AAa~~~l~NyRs~l~Dcs~al~~-----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 126 --------AAAQLYLGNYRSALNDCSAALKL-----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhc-----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 77778889999999999999998 56689999999999999999999999999998887554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0019 Score=43.52 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.+|+.+|.+|..+|++++|+.++.++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467788888888888888888888888887753
|
... |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.011 Score=62.18 Aligned_cols=98 Identities=10% Similarity=0.118 Sum_probs=79.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCC------CCCc-------ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRG------APQG-------FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~------~~~~-------~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.|...|++++|..|+-.|..+|+++.. ...+ ..+.+--.+..||+++++.+-|+....+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 477888888888888888888887421 0011 123344578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..-|++.|.|+..+.+|.+|...+--+.-+|
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887776654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.053 Score=53.32 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc-CCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcC------CCcHHHHHHHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGR-RGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALE------PSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~-~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ld------P~~~~A~~~ra 323 (580)
..|+.++..+|++++.++|++- +-.....-+.-+..+|..|-. +.+++.||.+|+.|-+-- ..--++++..|
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 3456667777777777777751 000011123334445555544 367788888888776542 22246677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhc
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIG 403 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLg 403 (580)
..-..+++|..|+..|+++.... + + | . .+| -+.++|+-.-|
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s---~------~------n-----------~------LLK-------ys~KdyflkAg 202 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSS---L------D------N-----------N------LLK-------YSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---c------c------c-----------h------HHH-------hHHHHHHHHHH
Confidence 77788888888888888875441 1 0 0 0 011 12445666556
Q ss_pred ccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHH
Q 008039 404 LRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAA 479 (580)
Q Consensus 404 v~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~~~~~ 479 (580)
+-.-+..+.|. -+.+|+..-+-.|.|... ...+.|..+.+-.-..-...|.+..+-|..++ .+|.|..
T Consensus 203 LChl~~~D~v~---a~~ALeky~~~dP~F~ds---REckflk~L~~aieE~d~e~fte~vkefDsis--rLD~W~t 270 (288)
T KOG1586|consen 203 LCHLCKADEVN---AQRALEKYQELDPAFTDS---RECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS--RLDQWKT 270 (288)
T ss_pred HHhHhcccHHH---HHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc--hHHHHHH
Confidence 55444333333 233555555555554432 12334444444444555677888888887432 3554443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0072 Score=45.72 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
++++.+|.++.++|+|..|..+++.+|+++|+|..|......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4688999999999999999999999999999999986655444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.19 Score=57.15 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=84.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008039 156 KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ 235 (580)
Q Consensus 156 ~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ 235 (580)
.+..|.|+ |+.+-..|+++.|+.+|..+...-+. -...|. .|.. ..+..
T Consensus 911 d~~L~~WW--gqYlES~GemdaAl~~Y~~A~D~fs~---VrI~C~---------qGk~-----------------~kAa~ 959 (1416)
T KOG3617|consen 911 DESLYSWW--GQYLESVGEMDAALSFYSSAKDYFSM---VRIKCI---------QGKT-----------------DKAAR 959 (1416)
T ss_pred chHHHHHH--HHHHhcccchHHHHHHHHHhhhhhhh---eeeEee---------ccCc-----------------hHHHH
Confidence 35678886 88889999999999999987643110 000010 0100 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------ccCCCC---------------CcccHHHH-------HH
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD------GRRGAP---------------QGFLAECY-------MH 287 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~------~~~~~~---------------~~~~a~~~-------~n 287 (580)
+.+.-.....-...|..|-..|++.+|+..|++|-. ++..+. +-..+..| +.
T Consensus 960 iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 960 IAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred HHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh
Confidence 111111111111227778889999999999987643 321100 00001111 11
Q ss_pred H-HHHHHHcCChHHHHHHHHH-----HH-----hcCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 288 R-AFAYRSSGRIAESIADCNK-----TL-----ALEPS-CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 288 r-a~a~~~lg~~~eAl~~~~~-----Al-----~ldP~-~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+ -..|.+.|.+..|++..-+ +| .+||+ +++.+.+-+.-+....+|+.|+..+-.+.++
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1 1334455555555543221 11 23554 5677777788999999999998776555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=1 Score=50.41 Aligned_cols=258 Identities=13% Similarity=0.081 Sum_probs=140.9
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCCc-----HHHHHHHHHHHHHccChHHHHHHHHhhhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALA-LSPRL-----ELALELKARSLLYLRRFKDVADMLQDYIPS 89 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~-l~P~~-----~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~ 89 (580)
+++|+..|.+|++....+ .|+..+-+..|..|+. ++|.- ...|...|..|...|..++|..+++++++.
T Consensus 342 LRQn~~nV~eW~kRV~l~-----e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY-----EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HhcCCccHHHHHhhhhhh-----cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 447888888888776443 6788888888888765 66643 367788999999999999999999996522
Q ss_pred hhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH
Q 008039 90 LKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC 169 (580)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~ 169 (580)
| ++ .++|| .-.|...|..-
T Consensus 417 ----~---------------------------------------y~--~v~dL----------------a~vw~~waemE 435 (835)
T KOG2047|consen 417 ----P---------------------------------------YK--TVEDL----------------AEVWCAWAEME 435 (835)
T ss_pred ----C---------------------------------------cc--chHHH----------------HHHHHHHHHHH
Confidence 0 00 11111 12466668888
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCC-CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH---
Q 008039 170 CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSK-FPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR--- 245 (580)
Q Consensus 170 ~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~-l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~--- 245 (580)
....+++.|+.+++++..+.+. ..+...+++..... +..+-..+.....-..+---.+.+...+.++-++.-
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~----~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTN----PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCc----hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 8888999999999988765211 00000111100000 000000000000000000000111111111111100
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHH-HHH
Q 008039 246 --RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQA-LDT 321 (580)
Q Consensus 246 --~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A-~~~ 321 (580)
...-|+-+-...-|+++.+.|.+.|.+-.+.+.-.....|.-.....+.--+.+.|...|++||..-| .+.+. |+.
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 01225555566678888888888888742221111223334444444445567888888888888765 34444 334
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al 343 (580)
.|..=...|.-..|+..|++|.
T Consensus 592 YA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4555566777777788887773
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0056 Score=41.24 Aligned_cols=30 Identities=10% Similarity=-0.061 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+++|.++..+|++++|+.+|++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 478999999999999999999999999998
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.38 Score=50.25 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=92.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 008039 156 KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQ 235 (580)
Q Consensus 156 ~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ 235 (580)
.+..+.|+.++.++...|.++-|...+.++..+... .......+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----------------------------------~~~~~~~v~- 187 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----------------------------------SESLLPRVF- 187 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----------------------------------ccCCCcchH-
Confidence 345567888999999999999999999887654210 000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccCC----------------------------CCCcccHHHHH
Q 008039 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD-GRRG----------------------------APQGFLAECYM 286 (580)
Q Consensus 236 ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~-~~~~----------------------------~~~~~~a~~~~ 286 (580)
+ +.+..+...|+..+|+..+...+. .... ......+.++.
T Consensus 188 -~----------e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 256 (352)
T PF02259_consen 188 -L----------EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFL 256 (352)
T ss_pred -H----------HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHH
Confidence 1 227788889999999999888877 1100 01123456677
Q ss_pred HHHHHHHHc------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 287 HRAFAYRSS------GRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 287 nra~a~~~l------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.+|.-...+ +.+++++..|..++.++|++.++|+..|..+..+=+
T Consensus 257 ~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 257 LLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 777776677 888999999999999999999999999988776533
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=1.7 Score=46.09 Aligned_cols=192 Identities=19% Similarity=0.108 Sum_probs=131.7
Q ss_pred ChhhHHHHHHHHHHHH-hcCCCc-HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 38 EHSEIASALSLLDAAL-ALSPRL-ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al-~l~P~~-~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
..||-..|-..-.++- .++.+. +.++.+-|.+-+.-|+|++|-.-|+-.+ +|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-------~dP------------------ 150 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML-------DDP------------------ 150 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh-------cCh------------------
Confidence 4688888888887776 344333 4556778888999999999999888744 111
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.. + +.|| + .|-..-.++|..+.|+.+-+++...++.
T Consensus 151 -----------------Et----------R-llGL----------R--gLyleAqr~GareaAr~yAe~Aa~~Ap~---- 186 (531)
T COG3898 151 -----------------ET----------R-LLGL----------R--GLYLEAQRLGAREAARHYAERAAEKAPQ---- 186 (531)
T ss_pred -----------------HH----------H-HHhH----------H--HHHHHHHhcccHHHHHHHHHHHHhhccC----
Confidence 00 0 1111 1 1122346789999999998888766421
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR-- 273 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~-- 273 (580)
-.-+.... -......|+|+.|++..+......
T Consensus 187 ----------------------------------l~WA~~At------------Le~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 187 ----------------------------------LPWAARAT------------LEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred ----------------------------------CchHHHHH------------HHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 11111111 234567899999999998765531
Q ss_pred CCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++. -....+.++.-.+...... +...|..+...++++.|+++.+-..-+.+|+..|+.-.+-..++.+-+.
T Consensus 221 e~~~aeR~rAvLLtAkA~s~lda-dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDA-DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 111 1123456666666665554 4788999999999999999999999999999999999999999888544
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0045 Score=71.02 Aligned_cols=66 Identities=11% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHhhcCC--CCccchhhhhcccCCC----CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHH
Q 008039 383 ELKQRVASGE--TGNVDYYALIGLRRGC----SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSAL 456 (580)
Q Consensus 383 ~lk~~~~~~~--~~~~d~y~iLgv~~~a----~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~ 456 (580)
.++.++.++. ....+-|++|.++.+. ..+.|+++|+++|.++||||++. ..
T Consensus 1266 ~W~~ElekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----------------------GR 1322 (2235)
T KOG1789|consen 1266 TWYNELEKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----------------------GR 1322 (2235)
T ss_pred HHHHHHhcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----------------------HH
Confidence 3444444433 2455789999987543 34789999999999999999854 45
Q ss_pred HHHHHHHHHHHHhcC
Q 008039 457 LLYRLLQRGYSSVMS 471 (580)
Q Consensus 457 ~~f~~i~~Ay~~l~~ 471 (580)
++|..+++|||.|.+
T Consensus 1323 emFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1323 EMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHHHHHH
Confidence 779999999997653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=49.93 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=93.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
.|...-.+..+.++..+|+++..+--. . | -|+ .+...+.+
T Consensus 77 aamLake~~klsEvvdl~eKAs~lY~E----------------~--G---------------spd--tAAmaleK----- 116 (308)
T KOG1585|consen 77 AAMLAKELSKLSEVVDLYEKASELYVE----------------C--G---------------SPD--TAAMALEK----- 116 (308)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH----------------h--C---------------Ccc--hHHHHHHH-----
Confidence 355566777888999999988876311 0 0 022 22223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH----hc--CCCcHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTL----AL--EPSCIQ 317 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al----~l--dP~~~~ 317 (580)
+-...+.-+.++|+..|++++.+-+. .....-..++...+.++.++.+|.+|-..+.+-. .. -|+.-+
T Consensus 117 -----Aak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k 191 (308)
T KOG1585|consen 117 -----AAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCK 191 (308)
T ss_pred -----HHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHH
Confidence 66677889999999999999887321 1123356778888999999999999877665543 22 355566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++...-.+|+...+|..|..+|+...++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 7777777777888999999998887444
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.048 Score=58.61 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
.....+-++ .....+.+.....-++-+.-+++.++.+++......|.|..|+..+-..- +...+ .+..
T Consensus 209 ~~ykVr~ll---q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn--i~~~~--g~~~----- 276 (696)
T KOG2471|consen 209 QLYKVRFLL---QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN--IHKEA--GGTI----- 276 (696)
T ss_pred hHhhHHHHH---HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc--ccccc--Cccc-----
Confidence 344555566 34556677777778888888999999999999999999999998554310 00000 0000
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCC-cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPS-FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
++. ..| -.|.+||-+++.+|.+.-++.+|.+
T Consensus 277 -------------------------T~q~~~c-----------------------if~NNlGcIh~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 277 -------------------------TPQLSSC-----------------------IFNNNLGCIHYQLGCYQASSVLFLK 308 (696)
T ss_pred -------------------------cchhhhh-----------------------eeecCcceEeeehhhHHHHHHHHHH
Confidence 000 001 1367899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+++-.....++. + -....+ .......+..+|+. |..+...|+.-.|.+
T Consensus 309 AL~N~c~qL~~g-~-~~~~~~--------------------tls~nks~eilYNc----------G~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 309 ALRNSCSQLRNG-L-KPAKTF--------------------TLSQNKSMEILYNC----------GLLYLHSGRPLLAFQ 356 (696)
T ss_pred HHHHHHHHHhcc-C-CCCcce--------------------ehhcccchhhHHhh----------hHHHHhcCCcHHHHH
Confidence 996222212211 0 000000 01233445555555 888889999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
+|.+++.. ...++.+|..++.|.+.
T Consensus 357 Cf~~av~v-----fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 357 CFQKAVHV-----FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHH-----HhcCcHHHHHHHHHHHH
Confidence 99988886 34467888888888764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.17 Score=46.07 Aligned_cols=112 Identities=25% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--H
Q 008039 164 VLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--K 241 (580)
Q Consensus 164 ~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k 241 (580)
..|......|+.+.++..+++++.+- .++.+... ++..-+......+ .
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly-----------~G~~l~~~-------------------~~~~W~~~~r~~l~~~ 60 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALY-----------RGDFLPDL-------------------DDEEWVEPERERLREL 60 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT-------------SSTTGGG-------------------TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHh-----------CCCCCCCC-------------------CccHHHHHHHHHHHHH
Confidence 34666778899999999999999773 22222100 1111111111111 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
.+......+..+...|+|++|+..+.+++.. +|.+-.+|..+-.+|..+|++.+|+..|.+...
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALAL-----DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2344555677889999999999999999998 567889999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.4 Score=45.99 Aligned_cols=278 Identities=14% Similarity=0.145 Sum_probs=170.5
Q ss_pred ccccchhhhHHHHHHHHHHHHH--------hhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 14 HWWLSNRKIVDKYIRDARTLIA--------TQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.+-++-++...+.|+.++.-+. ...++++..|-..|++||..+-++..+|..-|.+=+..+....|...+++
T Consensus 53 eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR 132 (677)
T KOG1915|consen 53 EYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR 132 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 4444556666666666655431 11368999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHH
Q 008039 86 YIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVL 165 (580)
Q Consensus 86 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~L 165 (580)
++..|+. .+..|.-|
T Consensus 133 Avt~lPR---------------------------------------------------------------VdqlWyKY-- 147 (677)
T KOG1915|consen 133 AVTILPR---------------------------------------------------------------VDQLWYKY-- 147 (677)
T ss_pred HHHhcch---------------------------------------------------------------HHHHHHHH--
Confidence 7732211 11234433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
--.--.+|++..|-..|++=+.. .|+......+.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--------------------------------------~P~eqaW~sfI-------- 181 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--------------------------------------EPDEQAWLSFI-------- 181 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--------------------------------------CCcHHHHHHHH--------
Confidence 23345689999999999987654 25555444442
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+--.+-+..+.|-..|.+-+-. +| ....|..-+.--.+-|+..-|...|.+|+..-.++..+ ..+
T Consensus 182 -----~fElRykeieraR~IYerfV~~-----HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~----e~l 246 (677)
T KOG1915|consen 182 -----KFELRYKEIERARSIYERFVLV-----HP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA----EIL 246 (677)
T ss_pred -----HHHHHhhHHHHHHHHHHHHhee-----cc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH----HHH
Confidence 2334567789999999999886 33 46677778888888999999999999999864433221 122
Q ss_pred HHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHH---------------HHHHHHHHhhc
Q 008039 326 LETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTT---------------KIQELKQRVAS 390 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~---------------~~k~lk~~~~~ 390 (580)
+..--.|++....|+++--++.=+++. .|.. +-.++.+..-...+ +--+....+..
T Consensus 247 fvaFA~fEe~qkE~ERar~iykyAld~--~pk~-------raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 247 FVAFAEFEERQKEYERARFIYKYALDH--IPKG-------RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcc-------cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 222333444444444444443322221 1211 00111111111111 11122222333
Q ss_pred CCCCccchhhhhcccCCC-CHHHHHHHHHHHHhhcCC
Q 008039 391 GETGNVDYYALIGLRRGC-SRSELERAHLLLSLRHKP 426 (580)
Q Consensus 391 ~~~~~~d~y~iLgv~~~a-~~~ei~~ayr~lal~~hP 426 (580)
....-..+|..|.+..+. ..+.|+..|-+.....-|
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 223334466677766555 677888888876665555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.21 Score=56.86 Aligned_cols=139 Identities=14% Similarity=0.031 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.||+.+.-+-..++.+.|+++|+++-.-+-.-+|-- -.++.....+.++.
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL------------------------------~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML------------------------------KEYPKQIEQYVRRK 909 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH------------------------------HhChHHHHHHHHhc
Confidence 367778888889999999999998532110000000 00112222222221
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
++-.-++==|.-+-..|+.+.|+..|..|-+ |+.+-.++.-+|+.++|-. |.-...+.-|.|
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------------~fs~VrI~C~qGk~~kAa~-----iA~esgd~AAcY 971 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD-------------YFSMVRIKCIQGKTDKAAR-----IAEESGDKAACY 971 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh-------------hhhheeeEeeccCchHHHH-----HHHhcccHHHHH
Confidence 1111111116666678889999999987765 4555566667888888876 444567888999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.+|..|...|++.+|+..|.+|..+-+
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAqafsn 998 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQAFSN 998 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999977643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.011 Score=42.54 Aligned_cols=40 Identities=30% Similarity=0.235 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKAR 68 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~ 68 (580)
++..|+.+. ..|++++|+..|+++|+.+|+++.++..+|.
T Consensus 4 ~~~la~~~~---~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 4 WLALARAYR---RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666 6899999999999999999999999988775
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.012 Score=66.48 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCc
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS--SGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~--lg~~~eAl~~~~~Al~ldP~~ 315 (580)
..+......+.+||.+|..++|.+|.-.|..++.+. |..+...+.++.|.+.|++. +|+|..++.+|+-++...|..
T Consensus 48 v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll-p~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i 126 (748)
T KOG4151|consen 48 VFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL-PKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRI 126 (748)
T ss_pred HHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheec-cccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchH
Confidence 344567788899999999999999999999999974 55567788999999988876 568999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.++++.|+.+|..++.++-|++++.-.
T Consensus 127 ~~~Ll~r~~~y~al~k~d~a~rdl~i~ 153 (748)
T KOG4151|consen 127 SKALLKRARKYEALNKLDLAVRDLRIV 153 (748)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.6 Score=47.69 Aligned_cols=61 Identities=26% Similarity=0.291 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
..+.-+.++..++ ..|++.+|...|..++..+|.+..+...+|+||+..|++++|...+..
T Consensus 133 ~~e~~~~~~~~~~---~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 133 EEEEALAEAKELI---EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHHHHHHhhhhh---hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3444556666666 789999999999999999999999999999999999999999987665
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.2 Score=44.05 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
+--+|+.++.++|+..+++++++-+.. +.... .+..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~--------------------------------------Grf~~------aAk~ 115 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDM--------------------------------------GRFTM------AAKH 115 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhh--------------------------------------hHHHH------HHhh
Confidence 334566679999999999999885321 10000 0111
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HH
Q 008039 246 RRTAAIAALDA-GLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQ 317 (580)
Q Consensus 246 ~k~~G~~~~~~-g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~ 317 (580)
+.+-|..+-.. .+++.||.+|.++-+.--. ........++...+.--..+++|..||..|++.....-++ ++
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 22225555444 7899999999999876211 0111233566666666778999999999999988764443 34
Q ss_pred H-HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 A-LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A-~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
- ++.-|.|++-..+.-.+...+++..++
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 4 455567777778887887777777666
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.97 Score=48.85 Aligned_cols=184 Identities=10% Similarity=-0.014 Sum_probs=136.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCC
Q 008039 48 LLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDS 127 (580)
Q Consensus 48 ~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 127 (580)
-|+.-++-+|.+-.+|..--+..-..|.-+...+.|+++|... +|-
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv---------------------------pp~------- 355 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV---------------------------PPA------- 355 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC---------------------------Cch-------
Confidence 3677899999999999999999999999999999999988211 110
Q ss_pred CCCCCCcccccchHHHHHHHHhhhccccccchhH-----HHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccC
Q 008039 128 LGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR-----YLVLGQ-ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLS 201 (580)
Q Consensus 128 ~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~-----~~~LG~-a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~ 201 (580)
.+| .+|. |.+.+. .-....+.+.+-.+|+.|+.|-|
T Consensus 356 --------------~ek-------------r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP----------- 397 (677)
T KOG1915|consen 356 --------------SEK-------------RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP----------- 397 (677)
T ss_pred --------------hHH-------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-----------
Confidence 001 1222 211111 11456889999999999998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc
Q 008039 202 DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL 281 (580)
Q Consensus 202 ~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~ 281 (580)
...| ....+..++ +.-..++.+...|-..+-.||..+ | .
T Consensus 398 HkkF-----------------------tFaKiWlmy------------A~feIRq~~l~~ARkiLG~AIG~c-P-----K 436 (677)
T KOG1915|consen 398 HKKF-----------------------TFAKIWLMY------------AQFEIRQLNLTGARKILGNAIGKC-P-----K 436 (677)
T ss_pred cccc-----------------------hHHHHHHHH------------HHHHHHHcccHHHHHHHHHHhccC-C-----c
Confidence 1112 123333333 566778899999999999999975 2 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..++-..-..-.++++++.+...|++-|+-.|.+-.+|...|.+-..+|+.|.|...|+-|+.
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 344544455667889999999999999999999999999999999999999999999998853
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.017 Score=38.60 Aligned_cols=31 Identities=10% Similarity=-0.050 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++++.+|.++..+|+|++|+..|++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999883
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.014 Score=49.95 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=43.7
Q ss_pred chhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 397 DYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 397 d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.--.||||.++++.+.|+.+||+.-+.-|||+.+++.- -..|+||+++|..+.
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl------------------------AsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL------------------------ASKINEAKDLLEGTS 109 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH------------------------HHHHHHHHHHHhccc
Confidence 34568999999999999999999999999999877542 356899999766544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.013 Score=37.18 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
.+++++|.++..+|++++|+..+.+++.++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467888888888899999998888888888753
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.15 Score=49.06 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.-+.++..++..|++++|+..++.++.. |.++....+.+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---------------------------------------t~De~lk~l~~l- 130 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---------------------------------------TKDENLKALAAL- 130 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---------------------------------------chhHHHHHHHHH-
Confidence 4556899999999999999999988743 222333222211
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
.-+.+.+..|.+++|+..++..-. ....+...-.+|.+++..|+-++|...|.+++..+++..
T Consensus 131 -------RLArvq~q~~k~D~AL~~L~t~~~------~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 -------RLARVQLQQKKADAALKTLDTIKE------ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -------HHHHHHHHhhhHHHHHHHHhcccc------ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 128889999999999988775544 344566677899999999999999999999999975543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2 Score=45.60 Aligned_cols=229 Identities=13% Similarity=0.044 Sum_probs=139.6
Q ss_pred HHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 33 LIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 33 ~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
+|+.+..|+.+.|..+-..|-++.|.-+-+....=..++..|+++.|+...+......-..++ .-.++
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~------------~aeR~ 228 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD------------VAERS 228 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh------------hHHHH
Confidence 345566789999999999999999999888888888888999999999887764321111110 01244
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHH--HHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLK--KKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
|+-||-... ...++.+.-. ......++..++ ..-.-..-+.++|..|++-++-..++.+.+..
T Consensus 229 rAvLLtAkA------------~s~ldadp~~Ar~~A~~a~KL~pd--lvPaav~AAralf~d~~~rKg~~ilE~aWK~e- 293 (531)
T COG3898 229 RAVLLTAKA------------MSLLDADPASARDDALEANKLAPD--LVPAAVVAARALFRDGNLRKGSKILETAWKAE- 293 (531)
T ss_pred HHHHHHHHH------------HHHhcCChHHHHHHHHHHhhcCCc--cchHHHHHHHHHHhccchhhhhhHHHHHHhcC-
Confidence 444443210 0000000000 011111111111 12233455788999999999988888877542
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL 270 (580)
|- ..+ +..|....--+.++.-.+++-
T Consensus 294 -------------------------------------PH-P~i----------------a~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 294 -------------------------------------PH-PDI----------------ALLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred -------------------------------------CC-hHH----------------HHHHHHhcCCCcHHHHHHHHH
Confidence 21 222 222223333334444455443
Q ss_pred hccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHHH
Q 008039 271 DGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 271 ~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~~al~l 345 (580)
.+. .-.+.+....+.++.+-+.-|+|..|..-.+.++.+.|. ..+|..++.+-... ||-.+....+-+++.-
T Consensus 320 ~L~--slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLE--SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHH--hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 331 114557888888899999999999999999999999886 44566667766655 8888888888888544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.5 Score=46.02 Aligned_cols=136 Identities=18% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+-..+-+-..+|+.-.|+..-++.+++ |+......++.++
T Consensus 512 ~A~~ayV~L~Lgd~i~AL~~a~kLLq~---------------------------------------~~lS~~~kfLGHi- 551 (696)
T KOG2471|consen 512 FANMAYVELELGDPIKALSAATKLLQL---------------------------------------ADLSKIYKFLGHI- 551 (696)
T ss_pred HHHHHHHHHHhcChhhHHHHHHHHHhh---------------------------------------hhhhhHHHHHHHH-
Confidence 334455667899999999988888876 3445555555443
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----------------------CC------CCC-----cccHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR----------------------RG------APQ-----GFLAECYMHR 288 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~----------------------~~------~~~-----~~~a~~~~nr 288 (580)
-.|.++.-..+..+|+.++.--+-.. +| ... .-...+++|+
T Consensus 552 ------YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nL 625 (696)
T KOG2471|consen 552 ------YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANL 625 (696)
T ss_pred ------HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHH
Confidence 33667777788888888776521110 11 000 1135789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEP--SCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP--~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|.++.-.|+++.|......|..+-| .+++|...+--+-.++|+...|+..+++..
T Consensus 626 a~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 626 AAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 9999999999999999999998877 778999888889999999999999888773
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.091 Score=53.58 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 280 FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 280 ~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.-...+.|+=.+|...++++.|+.+++..+.++|+++.-+.-||-+|.++|++..|+.||+..++.
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999999999999999999887
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.17 Score=55.83 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH--HHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL--DTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~--~~ra~~ 325 (580)
.+|..+...|+.++|++.|++++... ..-......+++.++.|++-+++|++|..++.+.++.+ .+.+++ |..|.|
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQ-SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccch-hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44999999999999999999998642 22345577899999999999999999999999998864 556664 566889
Q ss_pred HHhcCCh-------hHHHHHHHHHHHH
Q 008039 326 LETIRCL-------PDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~-------~eAi~~~~~al~l 345 (580)
+..+++. ++|...|.++-.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999 8888888888666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.049 Score=55.54 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=64.5
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++++++..++...+..+. ..++++.|+...+..|.+.|+++.-+.-||.+|.++|.+..|+.+++.+|.. .|+++
T Consensus 175 ~~~~il~Rml~nLK~~~~--~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~---~P~dp 249 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALM--EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ---CPEDP 249 (269)
T ss_pred CHHHHHHHHHHHHHHHHH--HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh---CCCch
Confidence 567788888888776552 6789999999999999999999999999999999999999999999997744 45444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.028 Score=38.67 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++|.+|..+|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999998776
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.8 Score=50.14 Aligned_cols=141 Identities=22% Similarity=0.151 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+.++|.+..-.|++++|..+.+.+.+++.. .+ -.+- ..+.
T Consensus 499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~----------~~------------------------~~~l---~~~~-- 539 (894)
T COG2909 499 ALSVLGEAAHIRGELTQALALMQQAEQMARQ----------HD------------------------VYHL---ALWS-- 539 (894)
T ss_pred hhhhhhHHHHHhchHHHHHHHHHHHHHHHHH----------cc------------------------cHHH---HHHH--
Confidence 4667899999999999999999999888532 00 0111 1121
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CC
Q 008039 241 KLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE----PS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld----P~ 314 (580)
...++.++..+| .|.+....|...-... -...+...-+..-++.++..--+++.+.......+++- |.
T Consensus 540 -----~~~~s~il~~qGq~~~a~~~~~~~~~~~q~-l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~ 613 (894)
T COG2909 540 -----LLQQSEILEAQGQVARAEQEKAFNLIREQH-LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQ 613 (894)
T ss_pred -----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccc
Confidence 222355666666 3444444444332211 01133333334444444444444777777777777652 22
Q ss_pred --cHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 315 --CIQ-ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 315 --~~~-A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
... +++.++.+....|++++|...+.....+.
T Consensus 614 ~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 614 PLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222 23589999999999999999999998773
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.36 Score=53.38 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=71.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
..+...|..+++..+..-|++.-.+...|+++...|+.++|++.|++++.. +. .+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~---~~--------------------- 300 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES-QS---EW--------------------- 300 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc-hh---hH---------------------
Confidence 456888999999999999999999999999999999999999999986511 00 00
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+. -....++-+|.++..++++++|...|....+.
T Consensus 301 -------------------------~Q-----------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 301 -------------------------KQ-----------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred -------------------------Hh-----------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 00 00124677899999999999999999987754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.026 Score=37.29 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
+++++|.|+.++|++++|+..+++.+...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4667777777777777777777777776665
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.038 Score=36.99 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
.|+.+|.+|..+|++++|+..|+++++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 57889999999999999999999999985
|
... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.031 Score=38.45 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 284 CYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 284 ~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
+|.++|.+|..+|+|++|+..|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3677888888888888888888885544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.36 Score=49.24 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHH--
Q 008039 232 SVSQLLSHI--KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNK-- 307 (580)
Q Consensus 232 ~~~~ll~~~--k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~-- 307 (580)
.+..++.++ +.......++..+...|++.+|...|..++.. .+.+..+...++.||...|+.++|...+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~-----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA-----APENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh-----CcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555444 23344566788999999999999999999997 334678888899999999999776554332
Q ss_pred --------------------------------HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 --------------------------------TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 --------------------------------Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+..||++..+.+.+|..+...|++++|+..+-..++.
T Consensus 196 ~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 196 LQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23449999999999999999999999998877766544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.6 Score=42.53 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=62.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH-HHHhcCCCcHHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN-KTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~-~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
+++.+..|+|++|......+|.- ++..+..+.|+-.+-..+|.-.++...+- +....+|+++-.
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~k-----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v---------- 278 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDK-----DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV---------- 278 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH----------
Confidence 88899999999999999999995 33468999999999999999988777655 444557776543
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.++.+.-..|++++..
T Consensus 279 -k~~~ekeaeFDrl~~q 294 (299)
T KOG3081|consen 279 -KHLNEKEAEFDRLVLQ 294 (299)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4566777777777554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.81 E-value=6 Score=48.14 Aligned_cols=226 Identities=14% Similarity=0.057 Sum_probs=138.4
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhh
Q 008039 14 HWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALA-LSPRLELALELKARSLLY----LRRFKDVADMLQDYIP 88 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~ 88 (580)
...+.+|...--||+.--..| +.++.+.|-+..++||. ||++...=..+.=.+|+. -|--+...+.|+++-+
T Consensus 1449 rlvrssPNSSi~WI~YMaf~L---elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1449 RLVRSSPNSSILWIRYMAFHL---ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHhcCCCcchHHHHHHHHHh---hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 457888888888888887777 78889999999999987 788766443333333332 2322333333333221
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhc-cccccchhHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCR-NCEKEGQWRYLVLGQ 167 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~-~~~~~~~~~~~~LG~ 167 (580)
-|. +..+ ..+| .+.+.-. . .-+..-.++..+-+ -.+....| ...|.
T Consensus 1526 ycd-----~~~V-----~~~L----~~iy~k~-------e----------k~~~A~ell~~m~KKF~q~~~vW--~~y~~ 1572 (1710)
T KOG1070|consen 1526 YCD-----AYTV-----HLKL----LGIYEKS-------E----------KNDEADELLRLMLKKFGQTRKVW--IMYAD 1572 (1710)
T ss_pred hcc-----hHHH-----HHHH----HHHHHHh-------h----------cchhHHHHHHHHHHHhcchhhHH--HHHHH
Confidence 110 0000 0000 0000000 0 00011122222111 11233344 55699
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
.++...+-+.|..++++|+.-. |..+...-.-+.
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~l--------------------------------------Pk~eHv~~Iskf-------- 1606 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSL--------------------------------------PKQEHVEFISKF-------- 1606 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhc--------------------------------------chhhhHHHHHHH--------
Confidence 9999999999999999998652 332222222222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE--PSCIQALDTRALL 325 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~~~~A~~~ra~~ 325 (580)
+..-|+.|+-+.+-..|...+.. .|.+.++|+-....-++.|+.+.....|+++|.+. |...+-+|.+=--
T Consensus 1607 --AqLEFk~GDaeRGRtlfEgll~a-----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1607 --AQLEFKYGDAERGRTLFEGLLSA-----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred --HHHHhhcCCchhhHHHHHHHHhh-----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 77889999999999999999985 56688999988888999999999999999999874 5555555554444
Q ss_pred HHh
Q 008039 326 LET 328 (580)
Q Consensus 326 ~~~ 328 (580)
|.+
T Consensus 1680 yEk 1682 (1710)
T KOG1070|consen 1680 YEK 1682 (1710)
T ss_pred HHH
Confidence 443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.17 Score=55.63 Aligned_cols=142 Identities=19% Similarity=0.234 Sum_probs=103.9
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
+.++..-+..|+.+++ .-|.+++++..|++ .|+.-+|+.++..++.+.
T Consensus 195 ~~~~~~~~~~glq~~~---~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~---------------------------- 243 (886)
T KOG4507|consen 195 IDDIGHLIHEGLQKNT---SSWVLHNMASFYWRIKGEPYQAVECAMRALHFS---------------------------- 243 (886)
T ss_pred HHHHHHHHHHhhhcCc---hhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhC----------------------------
Confidence 3445555555654443 35888899999977 599999999999988663
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|++..-..++.. |..+++.|...+|--.+..|++- .+....-++-++.++..+|.
T Consensus 244 ----------~~h~kdi~lLSl----------aTiL~RaG~sadA~iILhAA~~d-----A~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 244 ----------SRHNKDIALLSL----------ATVLHRAGFSADAAVILHAALDD-----ADFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred ----------CcccccchhhhH----------HHHHHHcccccchhheeehhccC-----CccccccceeHHHHHHHHhh
Confidence 222222333444 99999999999999989888873 22333448899999999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|...+-.|..+.+.+|.+..+.-.++.+-.-+.+...++
T Consensus 299 ~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kl 337 (886)
T KOG4507|consen 299 YNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKL 337 (886)
T ss_pred hhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888777665544444444443
|
|
| >KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.056 Score=59.10 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=46.3
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008039 399 YALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSS 468 (580)
Q Consensus 399 y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~ 468 (580)
++-+++.--.+...||++|||.+|..||||.++-... .++++-|+++|-.+++|+..
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas-------------~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGAS-------------LEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccccCCccc-------------HHHHHHHHHHHHHHHHHHHh
Confidence 3445566677889999999999999999998765432 34789999999999999984
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.16 Score=51.84 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
+++.-....+....+.|+.+.|...|..|+.+ .|.++.++...|.....-++.-+|=.+|-+||.++|.+.+|+.
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal-----aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALAL-----APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhc-----CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 33333334466778899999999999999998 4668999999999998889999999999999999999999999
Q ss_pred HHHHHH
Q 008039 321 TRALLL 326 (580)
Q Consensus 321 ~ra~~~ 326 (580)
+|+...
T Consensus 189 nR~RT~ 194 (472)
T KOG3824|consen 189 NRARTT 194 (472)
T ss_pred hhhccc
Confidence 998654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.68 Score=47.97 Aligned_cols=92 Identities=13% Similarity=0.013 Sum_probs=76.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
-.++|-.|+...-...+.++|..-.+ ..|...-+.-..+.++...|-|++|....++++++||.+.-+....+.++...
T Consensus 144 h~a~fy~G~~~~~k~ai~kIip~wn~-dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~ 222 (491)
T KOG2610|consen 144 HDAHFYNGNQIGKKNAIEKIIPKWNA-DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMN 222 (491)
T ss_pred hhHHHhccchhhhhhHHHHhccccCC-CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhc
Confidence 55778889998888888888875212 24444555666788999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++.|+.+..++-
T Consensus 223 ~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 223 GRHKEGKEFMYKT 235 (491)
T ss_pred chhhhHHHHHHhc
Confidence 9999999887765
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.20 E-value=1.3 Score=41.53 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=88.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
....|..+|......+ ..++..++..+++..-.+.|..+.....-|..++..|+|.+|+..++.+. ...|..+
T Consensus 6 ~~~iv~gLie~~~~al---~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~---~~~~~~p- 78 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVAL---RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE---ERAPGFP- 78 (160)
T ss_pred cHHHHHHHHHHHHHHH---ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh---ccCCCCh-
Confidence 4557888888888877 67899999999999999999999999999999999999999999998833 1111111
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
-.+.|..+|.....+.-|+.+ +.-....|--.++
T Consensus 79 --------------------------------------------~~kALlA~CL~~~~D~~Wr~~--A~evle~~~d~~a 112 (160)
T PF09613_consen 79 --------------------------------------------YAKALLALCLYALGDPSWRRY--ADEVLESGADPDA 112 (160)
T ss_pred --------------------------------------------HHHHHHHHHHHHcCChHHHHH--HHHHHhcCCChHH
Confidence 124455667777777788876 5555666667777
Q ss_pred HHHHHHHHHH
Q 008039 179 MVLLQTGKRL 188 (580)
Q Consensus 179 i~~l~~al~l 188 (580)
..+.+..+..
T Consensus 113 ~~Lv~~Ll~~ 122 (160)
T PF09613_consen 113 RALVRALLAR 122 (160)
T ss_pred HHHHHHHHHh
Confidence 7777776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.11 E-value=6.3 Score=44.58 Aligned_cols=182 Identities=17% Similarity=0.045 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-----cChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYL-----RRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l-----~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
+...|...+..+-... +..+....|.|++.- +..+.|+.+|..+.+.++.+
T Consensus 227 ~~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---------------------- 282 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---------------------- 282 (552)
T ss_pred hhhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH----------------------
Confidence 4567888888777664 567777788888884 67889999888866421110
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG-----LMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG-----~~eeAi~~l~~al~l~~ 190 (580)
...+ ..-+.+.+|.+|.... +.+.|+.+|.++..+
T Consensus 283 ------------------------------a~~~--------~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-- 322 (552)
T KOG1550|consen 283 ------------------------------ATKG--------LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-- 322 (552)
T ss_pred ------------------------------Hhhc--------CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--
Confidence 0000 0013456788887754 667799999988755
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA---GLYSEAIRHFS 267 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~---g~y~eAi~~y~ 267 (580)
++..+..++ |..+... .++..|..+|.
T Consensus 323 --------------------------------------g~~~a~~~l------------g~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 323 --------------------------------------GNPDAQYLL------------GVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred --------------------------------------CCchHHHHH------------HHHHHcCCccccHHHHHHHHH
Confidence 122222222 4444433 47899999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRSS----GRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLEHL 342 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~l----g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~~a 342 (580)
.|.... ...+++++|.||..- -+...|..++.++.+.+ ++.|.+.++..+... +.++.+...+...
T Consensus 353 ~Aa~~G-------~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 353 LAAKAG-------HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHcC-------ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 999852 678899999999863 46889999999999987 788888888777655 8888888777766
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
.++
T Consensus 424 a~~ 426 (552)
T KOG1550|consen 424 AEL 426 (552)
T ss_pred HHh
Confidence 554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.07 E-value=1 Score=49.20 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.-+-..+|+|..++|+.++||+.+...++..|. +...+.++..+++.++.|.++...+.+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344567899999999999999999999988775 5678999999999999999998888775
|
The molecular function of this protein is uncertain. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.058 Score=35.58 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+|++++|.++..+|++++|+..|+++++.+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999998774
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.1 Score=39.75 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 38 EHSEIASALSLLDAALALSPR------------LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~------------~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
..|-|++|...+.+|++++-. ++-.+.-++.++..||||++++..-+.++.-.....
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG----------- 89 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG----------- 89 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH------------
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc-----------
Confidence 468899999999999997643 235677799999999999999998887663322211
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhH--HHHHHHHHHhcCCHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWR--YLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~--~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
. | +.+.-.+|. .+..+.++-.+|+.++|+..|+
T Consensus 90 ---------E-L-----------------------------------~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 90 ---------E-L-----------------------------------HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp -----------T-----------------------------------TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ---------c-c-----------------------------------ccccchhHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 0 0 122233454 4668899999999999999999
Q ss_pred HHHHHH
Q 008039 184 TGKRLA 189 (580)
Q Consensus 184 ~al~l~ 189 (580)
.+-++-
T Consensus 125 ~agEMi 130 (144)
T PF12968_consen 125 MAGEMI 130 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.31 Score=42.58 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-----------IAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-----------~~eAl~~~~~Al~ldP~~~~A 318 (580)
+..+|..|++-+|++..+..+... ++ ....+.++.--|.++..+.. .-.+++.+.++..+.|..+..
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h-~~-~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRH-GE-DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHc-cC-CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 678899999999999999999863 22 22223566666888866542 345899999999999999888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++.+|.=+-....|++++...++++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877777777777777776544
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.42 Score=53.16 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+...+..+|+..+|..+++.|...+.....+ -....+.+..+++.||+++.+.+.|++++.+|=+.||.++-.-+..-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3456888999999999999999998863111 112247889999999999999999999999999999999998888888
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
+...-+.-++|+....+....
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 999999999999988887655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.47 E-value=13 Score=39.87 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 008039 163 LVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL 242 (580)
Q Consensus 163 ~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~ 242 (580)
+.+=.+|....+++.=+.+.+..-.+.. ...++...+..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~----------------------------------~~~~~~~~i~~~y----- 185 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPT----------------------------------CDVANQHNIKFQY----- 185 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCc----------------------------------cchhcchHHHHHH-----
Confidence 3444568888888888888776543310 0013445555555
Q ss_pred HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHh
Q 008039 243 LLRRRTAAIAALD---AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS---------GRIAESIADCNKTLA 310 (580)
Q Consensus 243 ~~~~k~~G~~~~~---~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l---------g~~~eAl~~~~~Al~ 310 (580)
|.++.+ .|+.++|+..+..++.-. .+..+..|.-.|.+|..+ ...+.|+..|.++.+
T Consensus 186 -------afALnRrn~~gdre~Al~il~~~l~~~----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 186 -------AFALNRRNKPGDREKALQILLPVLESD----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred -------HHHHhhcccCCCHHHHHHHHHHHHhcc----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 777777 999999999999977743 334678888888888642 247889999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
++|+...+ .+.+.++...|.-.+....+++
T Consensus 255 ~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 255 IEPDYYSG-INAATLLMLAGHDFETSEELRK 284 (374)
T ss_pred CCccccch-HHHHHHHHHcCCcccchHHHHH
Confidence 99765333 4455555555554444333333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.34 E-value=2.5 Score=42.16 Aligned_cols=140 Identities=12% Similarity=0.029 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|..-+.+|....++++|...+.++.+--. +-..++.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yE-----------------------------------------nnrslfh--- 69 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYE-----------------------------------------NNRSLFH--- 69 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH-----------------------------------------hcccHHH---
Confidence 44556677778889999998888774321 0011111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
....+...|..+-+...|.|++.+|.+|+.+--....|..+..-..++.=.+...+.++|+..|.+++.+-...
T Consensus 70 AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 70 AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 11222333666777888999999999998862222244556666667777778889999999999998773222
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+-+-..+.+|..++.|+||-..+.+-.-+
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 344556678899999999998888776544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.31 E-value=1.1 Score=52.49 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=58.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----------------
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---------------- 313 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---------------- 313 (580)
|+.+|..|.|+.|--+|...-. |..++..+..+|+|..|++..++|-...-
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~vSN-------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNVSN-------------FAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 9999999999999888874433 67789999999999999998877643210
Q ss_pred ---------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 314 ---------SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 314 ---------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
-+++-+-.+-.-|...|-|+|-+..++.++-|
T Consensus 1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 01222333445566777777777777776555
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.18 Score=55.42 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=85.6
Q ss_pred cccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 008039 153 NCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE 231 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~ 231 (580)
+......|..++++-.|++ .|+...|+++++.++-+.|. ..
T Consensus 600 ~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~--------------------------------------~~ 641 (886)
T KOG4507|consen 600 NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL--------------------------------------QQ 641 (886)
T ss_pred cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh--------------------------------------hh
Confidence 4455667776667666655 68999999999988765421 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 232 SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 232 ~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.+ .+... ++.+.+-|-.-+|-..+.++|.++ ...+..++-+|.+++.+.+.+.|++.+..|+.+
T Consensus 642 ~v-~~v~l----------a~~~~~~~~~~da~~~l~q~l~~~-----~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 642 DV-PLVNL----------ANLLIHYGLHLDATKLLLQALAIN-----SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred cc-cHHHH----------HHHHHHhhhhccHHHHHHHHHhhc-----ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 11 11122 788888888899999999999873 113456778899999999999999999999999
Q ss_pred CCCcHHHHHHHHH
Q 008039 312 EPSCIQALDTRAL 324 (580)
Q Consensus 312 dP~~~~A~~~ra~ 324 (580)
+|+++..-..+-.
T Consensus 706 ~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 706 TTKCPECENSLKL 718 (886)
T ss_pred CCCChhhHHHHHH
Confidence 9999876544433
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.71 Score=37.78 Aligned_cols=64 Identities=11% Similarity=0.022 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
..++|.-+|...+.++|+..++++|+.. ++ .+....++-.+..+|...|+|.+.+.+.-+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-TD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-CC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456999999999999999999999962 33 4557788888999999999999999887765554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.86 Score=38.45 Aligned_cols=77 Identities=9% Similarity=-0.033 Sum_probs=57.8
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+..+.+.+.. .|.+..+.+.+|.+++..|++++|++-+-.++..++++ ..+...+-.++..+|.-+.-+..|
T Consensus 7 ~~~al~~~~a~-----~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAA-----NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHH-----STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 35567777775 34578899999999999999999999999999999877 677777788888888877777777
Q ss_pred HHHH
Q 008039 340 EHLK 343 (580)
Q Consensus 340 ~~al 343 (580)
++-+
T Consensus 82 RRkL 85 (90)
T PF14561_consen 82 RRKL 85 (90)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=6.1 Score=42.14 Aligned_cols=185 Identities=15% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc--CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCC
Q 008039 51 AALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA--NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSL 128 (580)
Q Consensus 51 ~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 128 (580)
..|..+|.+...+...+.++..+|++..|.+.++++|=.++.+ |.... -+.. +..+.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~-------------~~~~-~~~g~------- 89 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSP-------------FRSN-LTSGN------- 89 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhcc-cccCc-------
Confidence 4568999999999999999999999999999999987433221 11000 0000 00000
Q ss_pred CCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCC
Q 008039 129 GRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFS 208 (580)
Q Consensus 129 ~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~ 208 (580)
+.++... ..+..-..+.+.....+.+.|-+..|+++.+-.+.|+
T Consensus 90 ------~rL~~~~-----------~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLd------------------- 133 (360)
T PF04910_consen 90 ------CRLDYRR-----------PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLD------------------- 133 (360)
T ss_pred ------cccCCcc-----------ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------------------
Confidence 0011100 1111222234445678889999999999888877663
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHH
Q 008039 209 KFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHR 288 (580)
Q Consensus 209 ~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nr 288 (580)
|+.+.+..++-. --.+.+.++|+=-|+.+...............+..-+.+
T Consensus 134 -------------------p~~DP~g~ll~I----------D~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 134 -------------------PDEDPLGVLLFI----------DYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred -------------------CCCCcchhHHHH----------HHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 332222222211 334568899988888888765521010001134577888
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHhcCCCcHHHHHH
Q 008039 289 AFAYRSSGRI---------------AESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 289 a~a~~~lg~~---------------~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
+.+++.+++- +.|-....+||..-|.-...++.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~ 232 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLD 232 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999988 78888888888876655444433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.9 Score=39.85 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=86.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+..++..+|+..+..+ ..++..++..+++..--+.|+.+.....-|.+++..|+|.||+..++.... . .
T Consensus 6 s~~iv~gLi~~~~~aL---~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~---~----~- 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYAL---RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS---S----A- 74 (153)
T ss_pred cHHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc---c----C-
Confidence 3457778888887777 478899999999999999999999999999999999999999999988331 0 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
..+ --.+.|..+|.+...+..|+.+ +......|...++
T Consensus 75 ---------------------------------~~~-------p~~kAL~A~CL~al~Dp~Wr~~--A~~~le~~~~~~a 112 (153)
T TIGR02561 75 ---------------------------------GAP-------PYGKALLALCLNAKGDAEWHVH--ADEVLARDADADA 112 (153)
T ss_pred ---------------------------------CCc-------hHHHHHHHHHHHhcCChHHHHH--HHHHHHhCCCHhH
Confidence 000 0124455567777777788876 5556677888888
Q ss_pred HHHHHHH
Q 008039 179 MVLLQTG 185 (580)
Q Consensus 179 i~~l~~a 185 (580)
+.+.+..
T Consensus 113 ~~Lv~al 119 (153)
T TIGR02561 113 VALVRAL 119 (153)
T ss_pred HHHHHHH
Confidence 8776654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.58 Score=46.12 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=71.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhcCC------C
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIA-------ESIADCNKTLALEP------S 314 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~-------eAl~~~~~Al~ldP------~ 314 (580)
+..+-....+++|++.|.-||-... .......+.++..+|.+|..+|+.+ .|+..|.++++... +
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~ 163 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD 163 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence 3355566789999999998876421 1123346888999999999999944 46666666665532 2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
....++.+|.+...+|++++|+..|.+++..
T Consensus 164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 2678899999999999999999999999654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.75 E-value=18 Score=39.65 Aligned_cols=203 Identities=13% Similarity=0.038 Sum_probs=135.5
Q ss_pred ChhhHHHHHHHHHHHHhcC------C-Cc-------HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 38 EHSEIASALSLLDAALALS------P-RL-------ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~------P-~~-------~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
..|=+++|..+-|++|... | .+ -..+++++.|-+-.|+|.+|++...+....+...|.-.
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~------ 360 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL------ 360 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH------
Confidence 4577888888888877643 2 11 14577889999999999999998887654443332100
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
++. .+ ..-..+.+|.-+...|.++.|...|.
T Consensus 361 ------------Llr--------------~~-----------------------~~~ih~LlGlys~sv~~~enAe~hf~ 391 (629)
T KOG2300|consen 361 ------------LLR--------------AH-----------------------EAQIHMLLGLYSHSVNCYENAEFHFI 391 (629)
T ss_pred ------------HHH--------------Hh-----------------------HHHHHHHHhhHhhhcchHHHHHHHHH
Confidence 000 00 00135678999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAI 263 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi 263 (580)
.+.++.. ..+...+. -...+..|.+.|+-+.
T Consensus 392 ~a~k~t~---------------------------------------~~dl~a~~--------nlnlAi~YL~~~~~ed-- 422 (629)
T KOG2300|consen 392 EATKLTE---------------------------------------SIDLQAFC--------NLNLAISYLRIGDAED-- 422 (629)
T ss_pred HHHHhhh---------------------------------------HHHHHHHH--------HHhHHHHHHHhccHHH--
Confidence 9988731 11111111 1122778888776543
Q ss_pred HHHHHHHhccCCC-CC-----cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHhcCC
Q 008039 264 RHFSKIVDGRRGA-PQ-----GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--S----CIQALDTRALLLETIRC 331 (580)
Q Consensus 264 ~~y~~AL~~~~~~-~~-----~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~----~~~A~~~ra~~~~~lg~ 331 (580)
|.++++...|. .. ...+.+++-.|.-.+..+++.||.....+.|++.- + ..-.+..++.+...+|+
T Consensus 423 --~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn 500 (629)
T KOG2300|consen 423 --LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGN 500 (629)
T ss_pred --HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 44455442222 22 23467888899999999999999999999998751 0 12345667889999999
Q ss_pred hhHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLY 346 (580)
Q Consensus 332 ~~eAi~~~~~al~l~ 346 (580)
..++....+-++++.
T Consensus 501 ~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 501 TVESRNMVRPAMQLA 515 (629)
T ss_pred hHHHHhccchHHHHH
Confidence 999999988888874
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.22 Score=34.51 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++.++|.+|..+|+|++|+..+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34455555555555555555555555554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.62 E-value=2.9 Score=42.86 Aligned_cols=131 Identities=8% Similarity=-0.046 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|..+.....+.+..+.|-..|.+|+.-. +-.-.+...+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--------------------------------------~~~~~vy~~~--- 41 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--------------------------------------RCTYHVYVAY--- 41 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------------------CS-THHHHHH---
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC--------------------------------------CCCHHHHHHH---
Confidence 45566777888888999999999987320 1112222222
Q ss_pred HHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---
Q 008039 241 KLLLRRRTAAIAALD-AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI--- 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~-~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~--- 316 (580)
|..-+. .++...|...|+.+++. .+.+..++.....-+..+|+.+.|...|++++..-|...
T Consensus 42 ---------A~~E~~~~~d~~~A~~Ife~glk~-----f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~ 107 (280)
T PF05843_consen 42 ---------ALMEYYCNKDPKRARKIFERGLKK-----FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSK 107 (280)
T ss_dssp ---------HHHHHHTCS-HHHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCH
T ss_pred ---------HHHHHHhCCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHH
Confidence 555555 67777799999999997 455778888888889999999999999999998866655
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..|.....-=...|+++.....++++.+++
T Consensus 108 ~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 108 KIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 456666666677888888888888887773
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.61 E-value=3.5 Score=42.15 Aligned_cols=134 Identities=12% Similarity=-0.030 Sum_probs=95.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
.+..|+++-|..+|.++-.+.. ..+|+. +..+- .-..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~----------------------------------~~~~~~--~~~La------~~~yn 40 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN----------------------------------SLDPDM--AEELA------RVCYN 40 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh----------------------------------cCCcHH--HHHHH------HHHHH
Confidence 4578999999999999876631 012322 21111 12233
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhccCC---------CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCC
Q 008039 249 AAIAALDAG-LYSEAIRHFSKIVDGRRG---------APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA----LEPS 314 (580)
Q Consensus 249 ~G~~~~~~g-~y~eAi~~y~~AL~~~~~---------~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~----ldP~ 314 (580)
-|..+++.+ +|++|+..++++.++.+. +.......++..++.+|+..+.++.... |.+++. --|+
T Consensus 41 ~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 41 IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC
Confidence 499999999 999999999999887311 1123467888899999999988754333 444443 3588
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+..++..=.++...++.+++...+.+++.-
T Consensus 120 ~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 120 KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 8888877777888899999999999999765
|
It is also involved in sporulation []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.78 Score=52.95 Aligned_cols=87 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 254 LDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 254 ~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
...++|..|+....+.+.- +|...-+....|..+.++|+.++|...++..-.+.+++...+-.+-.+|..+++++
T Consensus 20 ld~~qfkkal~~~~kllkk-----~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK-----HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3455556666666655553 23233344444555666666666663333333334455555555555666666666
Q ss_pred HHHHHHHHHHHH
Q 008039 334 DCLHDLEHLKLL 345 (580)
Q Consensus 334 eAi~~~~~al~l 345 (580)
+|+..|++++.-
T Consensus 95 ~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 95 EAVHLYERANQK 106 (932)
T ss_pred HHHHHHHHHHhh
Confidence 666666666444
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.52 Score=39.92 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=32.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCc----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQG----FLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~----~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
..++.|+|.+|++.+.+..+........ ....++.++|.++...|++++|+..+++||.+
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3467888999988888877752111111 11233444455555555555555555555444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.01 E-value=3.7 Score=42.78 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
++-.+...|-+++|.+.-++++++++ ..+......
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~----------------------------------------~D~Wa~Ha~----- 215 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINR----------------------------------------FDCWASHAK----- 215 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCC----------------------------------------cchHHHHHH-----
Confidence 45567778899999999888887741 222222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+-++--.|++.++.+...+.-..-+ ...-....-|-.-+.+|+.-+.|+.|+..|++-|
T Consensus 216 -----aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 216 -----AHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred -----HHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 6667778888888887766543211 0011123446677889999999999999998766
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.95 Score=34.22 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+|.++.+++++|++++|..+.+.++++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 456899999999999999999999987
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.53 Score=51.33 Aligned_cols=107 Identities=18% Similarity=0.098 Sum_probs=77.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
-++.++.+.+++...+ ..+.+..|+..|.+++...|.....|.++|.+|+..+=..++...+++-..+++++|
T Consensus 370 L~e~ie~~~~egnd~l---y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~---- 442 (758)
T KOG1310|consen 370 LPENIEKFKTEGNDGL---YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNP---- 442 (758)
T ss_pred chHHHHHHHhhccchh---hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCCh----
Confidence 3456777777776665 467899999999999999999999999999999986554444444443222323321
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
-.+-+|+.|+.+++.++++.+|
T Consensus 443 ----------------------------------------------------------s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 443 ----------------------------------------------------------SIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHHHhhHHHh
Confidence 0012577899999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 179 MVLLQTGKRLAT 190 (580)
Q Consensus 179 i~~l~~al~l~~ 190 (580)
+.+...+....|
T Consensus 465 l~~~~alq~~~P 476 (758)
T KOG1310|consen 465 LSCHWALQMSFP 476 (758)
T ss_pred hhhHHHHhhcCc
Confidence 998876655433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.33 Score=34.03 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+.|..+|.+-...++|++|+.||++++++..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999988843
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.53 E-value=10 Score=40.60 Aligned_cols=36 Identities=17% Similarity=0.044 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+...+..+..+.+-.|+++.|+..+.+++.+.|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 556677788888999999999999999999976544
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.12 E-value=0.79 Score=41.53 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=55.7
Q ss_pred HHHHHHc---CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDA---GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~---g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+.++.+. .+..+.|.+++..+.-..| ...-.+.|.++..+.++|+|+.++.+++..|+.+|+|.+|....-.+
T Consensus 39 AwaLV~S~~~~dv~~GI~iLe~l~~~~~~---~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 39 AWALVRSRDTEDVQEGIVILEDLLKSAHP---ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHcccchHHHHHhHHHHHHHhhhcCc---ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4455443 3467788888888862122 23567888999999999999999999999999999999986544333
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.07 E-value=5.1 Score=45.30 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=72.4
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 250 AIAALDAG-----LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 250 G~~~~~~g-----~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..+++.. ++..|+.+|.++-... ++.+.+++|.+|..-. ++..|..+|..|... .++.|.++
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 66776643 7899999999999973 5677889999998866 568999999998865 79999999
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 322 RALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
+|.+|.. ..+...|...|.++.+.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 9999975 35788999999999766
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.8 Score=39.08 Aligned_cols=93 Identities=13% Similarity=-0.029 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHH----HHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQ----ALDT 321 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~----A~~~ 321 (580)
+.|+-+.+.|++++|+++|.++.+.+ ........+++++-.+.+..|+|.....+..++-.+-.. +.. ....
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~--~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYC--TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44999999999999999999988863 223446788899999999999999999999998766322 211 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~a 342 (580)
.|-.++..++|.+|...|-.+
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHhchHHHHHHHHHcc
Confidence 344555566666666655444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=90.85 E-value=9.9 Score=43.41 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=29.5
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSC-IQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
|-+-|.+++-+....+ ..|++ .+.+.+.|.-|...|+..+|...|-++-
T Consensus 860 ydk~~~~ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 860 YDKHGLDDDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HHhhCcchHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 3344555544443332 23333 4567788888888888888877665553
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.27 Score=30.72 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++..++++++|+..|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999766
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.63 E-value=21 Score=36.25 Aligned_cols=77 Identities=12% Similarity=-0.018 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC----
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLETIR---- 330 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg---- 330 (580)
...|+..|.++-... ...+.+++|.+|.. -.++.+|+.+|.+|.+... ..+++.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~-------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 171 DKKALYLYRKAAELG-------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred HHhHHHHHHHHHHhc-------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCch
Confidence 358999999998862 67888999988866 3378999999999999876 89999999 666555
Q ss_pred -----------ChhHHHHHHHHHHHH
Q 008039 331 -----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 -----------~~~eAi~~~~~al~l 345 (580)
+...|...|..+...
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHc
Confidence 677777777777444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.52 E-value=3.9 Score=38.27 Aligned_cols=79 Identities=14% Similarity=-0.008 Sum_probs=66.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
.......++.+++...+...--+ .|....+-..-|..++..|+|.+|+..++.+.+-.|.++-+--.++.|+..+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 77778888999998887766555 3447788888899999999999999999999998999988888889999888
Q ss_pred CChh
Q 008039 330 RCLP 333 (580)
Q Consensus 330 g~~~ 333 (580)
|+.+
T Consensus 92 ~D~~ 95 (160)
T PF09613_consen 92 GDPS 95 (160)
T ss_pred CChH
Confidence 8754
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.45 E-value=27 Score=37.22 Aligned_cols=163 Identities=14% Similarity=-0.015 Sum_probs=105.6
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCC---CChHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTM---TESESV 233 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~d---Pd~~~~ 233 (580)
-.+..++.++.++..+|+++.|.+++++|+-.-...+.. .|...... ......+++ +++...
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~--------~F~~~~~~-------~~~g~~rL~~~~~eNR~f 102 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHP--------SFSPFRSN-------LTSGNCRLDYRRPENRQF 102 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH--------Hhhhhhcc-------cccCccccCCccccchHH
Confidence 344567889999999999999999999998553211110 11000000 000011222 333433
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-
Q 008039 234 -SQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL- 311 (580)
Q Consensus 234 -~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l- 311 (580)
..+++. ...+.+.|-|..|++..+-.+.+ ||..+|.. +++.+-...++.++|+-=+..++.....
T Consensus 103 flal~r~----------i~~L~~RG~~rTAlE~~KlLlsL-dp~~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~ 169 (360)
T PF04910_consen 103 FLALFRY----------IQSLGRRGCWRTALEWCKLLLSL-DPDEDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKC 169 (360)
T ss_pred HHHHHHH----------HHHHHhcCcHHHHHHHHHHHHhc-CCCCCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhh
Confidence 334444 77788999999999999999997 56555543 4455566667778888777777765542
Q ss_pred CCC----cHHHHHHHHHHHHhcCCh---------------hHHHHHHHHHHHHHH
Q 008039 312 EPS----CIQALDTRALLLETIRCL---------------PDCLHDLEHLKLLYN 347 (580)
Q Consensus 312 dP~----~~~A~~~ra~~~~~lg~~---------------~eAi~~~~~al~l~~ 347 (580)
..+ .+.--+..+-++..+++- +.|-..+++|+..++
T Consensus 170 ~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 170 YRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 111 234557788888888888 899999999988753
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.66 Score=32.03 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
+.++.|+|.+|..+|++++|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999986
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.32 E-value=2.4 Score=37.14 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHH-HHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESV-SQLLSHIKLL 243 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~-~~ll~~~k~~ 243 (580)
++.-++..|++-+|+++.+..+... ++...+ .-..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h--------------------------------------~~~~~~~~lh~------ 37 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH--------------------------------------GEDESSWLLHR------ 37 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc--------------------------------------cCCCchHHHHH------
Confidence 3567899999999999999876442 111211 1111
Q ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 244 LRRRTAAIAALDAG-----------LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 244 ~~~k~~G~~~~~~g-----------~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
.+|.++++.. -.-.++++|.+++.+ .|..+..++.+|.-+-...-|++++.-|.++|.+.
T Consensus 38 ----~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-----sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 38 ----LQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-----SPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred ----HHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-----ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 2265555433 356799999999998 45678899999988777778999999999998763
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=90.23 E-value=0.66 Score=42.58 Aligned_cols=53 Identities=28% Similarity=0.259 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHH
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDV 79 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eA 79 (580)
+..++.++..+ ..||+.-|+++++.++..+|++..+..++|.+|.++|.-.+.
T Consensus 71 d~vl~~A~~~~---~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 71 DKVLERAQAAL---AAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHH---HCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 44556666665 589999999999999999999999999999999998765443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.17 E-value=4.1 Score=46.13 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
+.|..+.....|++|.++|.+.-.. -|...|++.+.+|++ ++.....=|++.+.+-.+|+.+.
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~~~~-------------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYCGDT-------------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccch-------------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence 3488899999999999999877553 245677777777764 33333334778888888899999
Q ss_pred hcCChhHHHHHHHH
Q 008039 328 TIRCLPDCLHDLEH 341 (580)
Q Consensus 328 ~lg~~~eAi~~~~~ 341 (580)
..|.-++|+..|-+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 99999998887754
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.95 Score=48.72 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=57.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
++.+ +..++.+|.-|+ .+|+|..+.-.-.=...++| |+.++.+.|.|++...+|.||.+++.+
T Consensus 458 ~e~e-ian~LaDAEyLy---sqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 458 SEEE-IANFLADAEYLY---SQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cHHH-HHHHHHHHHHHH---hcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4454 888999999999 79999999988888999999 899999999999999999999998877
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.47 Score=46.74 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
.+.+.++++.|.+.|.+++.+ .|....-|+.+|....+.|+++.|...|++.+++||.+.-
T Consensus 4 ~~~~~~D~~aaaely~qal~l-----ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL-----APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc-----CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456778888888888888887 4556777888888888888888888888888888887643
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.98 E-value=1.1 Score=45.48 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+..|+=.++...++++.|+.+..+.|.++|.++..+.-+|-+|.++|.+.-|+.|++..++.
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 45667778889999999999999999999999999999999999999999999999999998777
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.90 E-value=21 Score=39.19 Aligned_cols=85 Identities=15% Similarity=0.095 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCcHHHHHH-
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE---PSCIQALDT- 321 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld---P~~~~A~~~- 321 (580)
...|.-+|.++++.||-....+.|+.... +.....+..+.-+|.++..+|+..++.....-++.+. |+.+--++.
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
Confidence 34488999999999999999999996311 1122345556678899999999999998888887763 444333332
Q ss_pred --HHHHHHhcCC
Q 008039 322 --RALLLETIRC 331 (580)
Q Consensus 322 --ra~~~~~lg~ 331 (580)
+-.+|...|+
T Consensus 529 si~~~L~~a~g~ 540 (629)
T KOG2300|consen 529 SILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHhCc
Confidence 2345555555
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.63 E-value=5.1 Score=41.06 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|.+=+....++++- ....++..++..+...|+++.++..+++.+.++|-+.++|.++-.+|...|+...|+..
T Consensus 137 f~~WV~~~R~~l~e-------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~ 209 (280)
T COG3629 137 FDEWVLEQRRALEE-------LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHH
Confidence 55555555555552 25678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|+++.++
T Consensus 210 y~~l~~~ 216 (280)
T COG3629 210 YRQLKKT 216 (280)
T ss_pred HHHHHHH
Confidence 9999876
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.59 E-value=20 Score=34.27 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
.+.+..|.+....|+...|+..|..+-.-.+ .|....-..-+
T Consensus 95 LA~mr~at~~a~kgdta~AV~aFdeia~dt~------------------------------------~P~~~rd~ARl-- 136 (221)
T COG4649 95 LARMRAATLLAQKGDTAAAVAAFDEIAADTS------------------------------------IPQIGRDLARL-- 136 (221)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHhccCC------------------------------------CcchhhHHHHH--
Confidence 3556678899999999999999997543210 02111111111
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
..+-.++..|-|++-....+.. . .+..|+...+.--+|.+-.+.|++.+|...|..... |.+-+...
T Consensus 137 --------raa~lLvD~gsy~dV~srvepL-a---~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprni 203 (221)
T COG4649 137 --------RAAYLLVDNGSYDDVSSRVEPL-A---GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNI 203 (221)
T ss_pred --------HHHHHHhccccHHHHHHHhhhc-c---CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHH
Confidence 2277889999999876544432 2 223677888888999999999999999999999665 88888889
Q ss_pred HHHHHHHHhc
Q 008039 320 DTRALLLETI 329 (580)
Q Consensus 320 ~~ra~~~~~l 329 (580)
.+|+++.+.+
T Consensus 204 rqRAq~mldl 213 (221)
T COG4649 204 RQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHH
Confidence 9999887643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.1 Score=37.82 Aligned_cols=45 Identities=24% Similarity=0.149 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 300 eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
..+..+.++++.+|++..+.+.+|..+...|++++|+..|-.+++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999999999999999998888743
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.7 Score=36.73 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHcCChHHHHHHHHHHHhcC----C-----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 290 FAYRSSGRIAESIADCNKTLALE----P-----SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 290 ~a~~~lg~~~eAl~~~~~Al~ld----P-----~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.-..+.|+|.+|++.+.+.+..- . ...-++.++|.++...|++++|+..++.++.+.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34567899999988887777552 1 235688999999999999999999999999984
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.91 E-value=4 Score=42.52 Aligned_cols=138 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.-..+|+.+.++.+|...+..+...+-+ +-++|.......+.
T Consensus 171 ~llESK~y~~l~Nl~KakasLTsART~Ana--------------------------------iYcpPqlQa~lDLq---- 214 (411)
T KOG1463|consen 171 HLLESKAYHALRNLPKAKASLTSARTTANA--------------------------------IYCPPQLQATLDLQ---- 214 (411)
T ss_pred hhhhhHHHHHHhcchhHHHHHHHHHHhhcc--------------------------------cccCHHHHHHHHHh----
Confidence 344578899999999999988877654211 11234333333322
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHH--HHHHHHHHHhcCCCcHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAE--SIADCNKTLALEPSCIQA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~e--Al~~~~~Al~ldP~~~~A 318 (580)
.|..+....+|..|..+|-+|.+.-+....+ .-...+-.+=.|-..++..++ ++-....+++.+.....|
T Consensus 215 -------SGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 215 -------SGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred -------ccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 2777777899999999999998852221111 122333344455566666665 555666788888889999
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHH
Q 008039 319 LDTRALLLET--IRCLPDCLHDLEHL 342 (580)
Q Consensus 319 ~~~ra~~~~~--lg~~~eAi~~~~~a 342 (580)
....|.++.. +.+|+.|+.+|..=
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~e 313 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKE 313 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHH
Confidence 9999999864 45566666666654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.5 Score=46.53 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=52.2
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 291 AYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 291 a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
...+.++.+.|.+.|++++++-|.+...|+++|....+.|+++.|...|++.+++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44567899999999999999999999999999999999999999999999998884
|
|
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.46 Score=45.22 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=49.1
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSS 468 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~ 468 (580)
.+.|.+||+.......+|+++|+++.-.+|||+...-..+ .+--..+.+.++.|+++|+.
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~-------------~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLK-------------LEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCC-------------HHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999986553322 12235667888999999984
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=88.58 E-value=2.3 Score=43.64 Aligned_cols=89 Identities=10% Similarity=-0.074 Sum_probs=70.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
...+.+..+.|-..|.+|+.. ......+|...|..-.. .++.+-|...|+.+++.-|.+...|.....-+..++
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~-----~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKD-----KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhCChHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 333444489999999999863 33467888888888666 556666999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
+.+.|...|++++..
T Consensus 85 d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 85 DINNARALFERAISS 99 (280)
T ss_dssp -HHHHHHHHHHHCCT
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999999543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.1 Score=45.87 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+-.+.+.-..+.|+.+.|...|..|++++|++++++...|+.....++.-+|-.+|-+|+.+
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 344455556678899999999999999999999999999999999999999999999999877
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.6 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHHccChHHHHHHHHh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALE---LKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~---~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.....|+.+..|+ ..++..+|+..+.++|+..++.+.-+. .+..+|...|+|++.++.-..
T Consensus 5 ~ak~~ie~GlkLY---~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 5 QAKQQIEKGLKLY---HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHh---ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888 788899999999999999999886544 467889999999999986444
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.16 E-value=21 Score=37.33 Aligned_cols=199 Identities=13% Similarity=0.081 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
+..+=+..-..||+++|.++.+|.++|.--. --.-+|...++++++..+..-. ++.+. ....+.
T Consensus 199 np~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr---------~sqq~-----qh~~~~ 262 (556)
T KOG3807|consen 199 NPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYR---------QSQQC-----QHQSPQ 262 (556)
T ss_pred CcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHh---------hHHHH-----hhhccc
Confidence 3445566678899999999999998876322 2345666777776643222100 00000 000000
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhccc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISL 200 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~ 200 (580)
+ .+..+...+...+..-.|+.|..++|+..+|++.++...+--
T Consensus 263 ---------~-----------------da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~----------- 305 (556)
T KOG3807|consen 263 ---------H-----------------EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF----------- 305 (556)
T ss_pred ---------h-----------------hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----------
Confidence 0 001111222333444568899999999999999988754321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH---HHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhccC
Q 008039 201 SDDSFPFSKFPVSNNHQTPPATPPRTMTESES---VSQLLSHIKLLLRRRTAAIAALD---AGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 201 ~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~---~~~ll~~~k~~~~~k~~G~~~~~---~g~y~eAi~~y~~AL~~~~ 274 (580)
|-..- -.+++..+-++..+-+--+.+.+ ......|.-+|+.||--..
T Consensus 306 ---------------------------pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~R 358 (556)
T KOG3807|consen 306 ---------------------------PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTR 358 (556)
T ss_pred ---------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 10000 11222222233333222223322 2233456667776643211
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.-...+.++.-..||..-.. -.|++...+|++.||.-++-+..+-
T Consensus 359 AVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 359 AVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 11122344455555554443 3588899999999999888766553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.15 E-value=14 Score=38.74 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=89.6
Q ss_pred cchhhhHHHHHHHHHHHHHhhC---------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 17 LSNRKIVDKYIRDARTLIATQE---------HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---------~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
..||.-|+-||..+..--.... ..-.+.-+.+|++||+.+|++...+...=.+...+-.-++....+++++
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l 92 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELL 92 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567777777766643221111 2335678899999999999999999988888888888888888888865
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHh---hhcccc---------
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAG---LCRNCE--------- 155 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---l~~~~~--------- 155 (580)
...|.+. .+++......- ..|..|+++++.+.+..- |.....
T Consensus 93 ---~~~~~~~----------~LW~~yL~~~q-------------~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~ 146 (321)
T PF08424_consen 93 ---FKNPGSP----------ELWREYLDFRQ-------------SNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDL 146 (321)
T ss_pred ---HHCCCCh----------HHHHHHHHHHH-------------HHhccCcHHHHHHHHHHHHHHHHHhhccccccccch
Confidence 2222211 23333222211 113344555554433222 211100
Q ss_pred ----ccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 156 ----KEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 156 ----~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
......++.+...+...|-.|.|+..+|..++++
T Consensus 147 ~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 147 PELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1122234455666788999999999999999885
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.39 E-value=14 Score=36.49 Aligned_cols=69 Identities=10% Similarity=-0.007 Sum_probs=48.4
Q ss_pred cCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QALDTRAL 324 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~~~ra~ 324 (580)
..=+..|++.|.++++..+. ...-....+++.+|..+.++|++++|+.++.++|...-... ..+..+|.
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 33367788888888875321 22233567889999999999999999999999997633222 24555544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.25 E-value=9.1 Score=36.47 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|.-|+..|++++|++.|.++....+ .....+...+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-------------------------------------~~~~~id~~l~~- 79 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCT-------------------------------------SPGHKIDMCLNV- 79 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-------------------------------------CHHHHHHHHHHH-
Confidence 467799999999999999999998764310 001112222222
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
-.+.+..++|.....+..++-.+.+. .+......+-..-|..++..++|..|...|-.++.
T Consensus 80 ---------irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 80 ---------IRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred ---------HHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 55677889999999999998776322 11222344566678888899999999888876653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.16 E-value=0.84 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 283 ECYMHRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 283 ~~~~nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
.+|..+|.+.+..++|+.|+.||.++|.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.14 E-value=15 Score=40.45 Aligned_cols=75 Identities=15% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++.+|+++-|..+|.++=+. ..+...|.-.|+.+.=....+.|..-. + +.-.-.++..+
T Consensus 354 g~~AL~~g~~~lAe~c~~k~~d~-------------~~L~lLy~~~g~~~~L~kl~~~a~~~~-~----~n~af~~~~~l 415 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQKAKDF-------------SGLLLLYSSTGDREKLSKLAKIAEERG-D----INIAFQAALLL 415 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHHCT-H-------------HHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhhcCc-------------cccHHHHHHhCCHHHHHHHHHHHHHcc-C----HHHHHHHHHHc
Confidence 88999999999999999876553 334556666777544333333333222 1 11223456667
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++++.+..+.+.
T Consensus 416 gd~~~cv~lL~~~ 428 (443)
T PF04053_consen 416 GDVEECVDLLIET 428 (443)
T ss_dssp T-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 8888877777666
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.94 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
|..+.||.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.46 E-value=41 Score=39.53 Aligned_cols=92 Identities=14% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCc--HHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----EPSC--IQALDTRA 323 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----dP~~--~~A~~~ra 323 (580)
|.+....|++++|+...+.++...+.+.......++...|.++.-.|+++.|+.+...+.++ +--+ ..+....+
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77788889999999999999887544445557788889999999999999999888888877 3333 33445668
Q ss_pred HHHHhcC--ChhHHHHHHHH
Q 008039 324 LLLETIR--CLPDCLHDLEH 341 (580)
Q Consensus 324 ~~~~~lg--~~~eAi~~~~~ 341 (580)
.++...| .+.+....|..
T Consensus 545 ~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 8888888 34444444443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.41 E-value=2.2 Score=43.21 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSL 90 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l 90 (580)
.++.++..+.......+- ..+++..|+...++.|.++|.++.-+.-+|-+|.++|-+.-|++++..++..|
T Consensus 175 ~~~~il~rll~~lk~~~~--~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 175 SNREILSRLLRNLKAALL--RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred cHHHHHHHHHHHHHHHHH--HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 456667777776665542 56789999999999999999999999999999999999999999999977444
|
|
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=85.20 E-value=4.9 Score=32.80 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
..+|.-+-..|+|++|+..|..++++.-..+.-+ +.++. ....+..++.+...+++.++..+
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~-~~n~~------~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAG-TLNDS------HLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc-CCChH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444478999999999999998864332212 11221 12335667788888888888744
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=19 Score=43.91 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHH------HHH-HHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALS------LLD-AALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~------~~~-~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
.+++...+...+ .+|.+.+|.+ +++ .--.+.|.....|..+|..+-.++.+++|+...+++. . +.
T Consensus 932 a~~~~e~gq~~~---~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~-i--i~-- 1003 (1236)
T KOG1839|consen 932 AKDSPEQGQEAL---LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKAC-I--IS-- 1003 (1236)
T ss_pred hhhhhhhhhhhh---cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccce-e--ee--
Confidence 344445554444 3555555555 666 4555789999999999999999999999999888754 0 00
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
+| +++++ .......|-+++...|..+..
T Consensus 1004 ----------------eR----------------------~~g~d--------------s~~t~~~y~nlal~~f~~~~~ 1031 (1236)
T KOG1839|consen 1004 ----------------ER----------------------VLGKD--------------SPNTKLAYGNLALYEFAVKNL 1031 (1236)
T ss_pred ----------------ch----------------------hccCC--------------CHHHHHHhhHHHHHHHhccCc
Confidence 00 00000 011123577788888999999
Q ss_pred HHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRL 188 (580)
Q Consensus 176 eeAi~~l~~al~l 188 (580)
..|+..+.+++.+
T Consensus 1032 ~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1032 SGALKSLNRALKL 1044 (1236)
T ss_pred cchhhhHHHHHHh
Confidence 9999999998876
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.02 E-value=93 Score=35.61 Aligned_cols=95 Identities=9% Similarity=0.065 Sum_probs=69.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC------CCCc---------------ccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRG------APQG---------------FLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~------~~~~---------------~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
|......|..+.|.+++.+++...+. ...+ ....+++..+.+.+-+|+|..|......+
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~ 387 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFM 387 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 66677777776777777777664211 0000 12456677888889999999998888877
Q ss_pred HhcC---C------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 309 LALE---P------SCIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 309 l~ld---P------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
.... | -.+..++..|..+...|+.+.|...|.+.+-
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~ 432 (608)
T PF10345_consen 388 RQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRF 432 (608)
T ss_pred HHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHH
Confidence 6552 2 2477899999999999999999999996653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.00 E-value=7.3 Score=39.86 Aligned_cols=85 Identities=14% Similarity=-0.011 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhc----CC---C-------
Q 008039 253 ALDAGLYSEAIRHFSKIVDGR---RGAPQGFLAECYMHRAFAYRSSG-RIAESIADCNKTLAL----EP---S------- 314 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~---~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~~Al~l----dP---~------- 314 (580)
+.++|+++.|..+|.++-.+. +|......+.++||.|......+ ++++|+..+++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999986642 34333446789999999999999 999999999999887 22 1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
....+..++.+|...+.++....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 14567888999999998865444
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.91 E-value=15 Score=34.10 Aligned_cols=79 Identities=15% Similarity=-0.015 Sum_probs=61.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
.......++..++.......--+ .|....+-.--|..++..|+|.+|+..++....-.+..+-+--.++.|+..+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 44555588888887766655444 3446667777799999999999999999998888888888888888999888
Q ss_pred CChh
Q 008039 330 RCLP 333 (580)
Q Consensus 330 g~~~ 333 (580)
||.+
T Consensus 92 ~Dp~ 95 (153)
T TIGR02561 92 GDAE 95 (153)
T ss_pred CChH
Confidence 8854
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.78 E-value=5.2 Score=40.95 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..++...|..|...|.+.+|+..|.+++.+||-+...+..+-.+|..+|+--.++..|++..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 4556667899999999999999999999999999999999999999999999999999988665
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.37 E-value=52 Score=33.34 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=67.3
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-------RIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-------~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|..+.. ..++.+|...|.++.....+ ....+.++++.+|..-. +...|+..+.++-... +..+
T Consensus 116 g~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~----~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 116 GLMYANGRGVPLDLVKALKYYEKAAKLGNV----EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 666655 44999999999999996311 01344778888887742 2336999999988875 8999
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 319 LDTRALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 319 ~~~ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
.+.+|.+|.. -.++.+|+..|.++.+.
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 9999988865 45889999999999654
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=82.00 E-value=8.3 Score=30.43 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQ 386 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~ 386 (580)
+...|.-+-..|+|++|+..|..++++....++.. +++.|+ .-+..++.....++..++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~--~~~~~~------~~l~~k~~~yl~RAE~lk~ 67 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQALKSE--SNPERR------QALRQKMKEYLERAEKLKE 67 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHS--TTHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC--CCHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 34455555678999999999999998876666555 244332 2245556666666666654
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=81.67 E-value=1e+02 Score=35.22 Aligned_cols=201 Identities=16% Similarity=0.105 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHh---cCCCc-HHHHHHHHHHHH-HccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 42 IASALSLLDAALA---LSPRL-ELALELKARSLL-YLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 42 ~~~Al~~~~~Al~---l~P~~-~~~~~~rA~~l~-~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
...||..+..++. +.|.. +.++...|.+|+ ....+++|...+.+++-.++. +
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~---------------------- 93 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-H---------------------- 93 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-c----------------------
Confidence 4567778887773 44433 245666888888 689999999999986622111 0
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
+..|++ ....+.++.+++..+... |+..++++++....
T Consensus 94 ---------------------~~~d~k---------------~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~----- 131 (608)
T PF10345_consen 94 ---------------------RLTDLK---------------FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET----- 131 (608)
T ss_pred ---------------------chHHHH---------------HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-----
Confidence 011111 112456789999998888 99999998876311
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-C
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-G 275 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~ 275 (580)
..+..+...++.+ +...++..+++..|++.++....+.. .
T Consensus 132 -------------------------------~~~~~w~~~frll--------~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 132 -------------------------------YGHSAWYYAFRLL--------KIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred -------------------------------cCchhHHHHHHHH--------HHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 0112222222221 12223333899999999999988732 1
Q ss_pred CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------CCcHHHHHHHHH--HHHhcCChhHHHHHHHHHH
Q 008039 276 APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE----------PSCIQALDTRAL--LLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 276 ~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld----------P~~~~A~~~ra~--~~~~lg~~~eAi~~~~~al 343 (580)
.+......+..-.+.++...+..+++++.+++++..- +....+|+.+-. ++...|++..+...++...
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222233444555777888888899999998885432 223556555544 5556777778888888776
Q ss_pred HHH
Q 008039 344 LLY 346 (580)
Q Consensus 344 ~l~ 346 (580)
+..
T Consensus 253 ~~~ 255 (608)
T PF10345_consen 253 QFL 255 (608)
T ss_pred HHH
Confidence 663
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=80.70 E-value=23 Score=38.58 Aligned_cols=53 Identities=19% Similarity=0.100 Sum_probs=48.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
|.-++..|+|.++.-++.=..+++| .+.+|..+|-++....+|++|..++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4456789999999999999999999 9999999999999999999999999876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.70 E-value=1.8 Score=27.27 Aligned_cols=22 Identities=18% Similarity=-0.189 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
+++.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.55 E-value=55 Score=31.33 Aligned_cols=95 Identities=17% Similarity=0.112 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPSCIQALDTRA 323 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~~~~A~~~ra 323 (580)
....|......|+-..|+..|+++-.- -+.+....-.+...-+..++..|-|++-..-.+- |.- +|--..+.-.+|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~mR~sArEALg 174 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNPMRHSAREALG 174 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCChhHHHHHHHHh
Confidence 344588999999999999999998773 3444444555666667888889999876554443 332 455566777788
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~a 342 (580)
-+-.+-|+|..|...|..+
T Consensus 175 lAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 175 LAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHhccchHHHHHHHHHH
Confidence 9999999999999999988
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.53 E-value=1.4e+02 Score=39.04 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 259 YSEAIRHFSKIVDGR--RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 259 y~eAi~~y~~AL~~~--~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
..+-|-.+.+++-.. +++-......+|.+.|..-.+.|+++-|-.+.-.|.+.. -++++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 555566666654431 233345578999999999999999999999999998887 6889999999999999999999
Q ss_pred HHHHHHHHHH
Q 008039 337 HDLEHLKLLY 346 (580)
Q Consensus 337 ~~~~~al~l~ 346 (580)
..++..++++
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999998875
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 37/207 (17%), Positives = 76/207 (36%), Gaps = 28/207 (13%)
Query: 229 ESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHR 288
+ + +K L + +A + G Y++A + ++ + +
Sbjct: 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE-YTVRSKERI 301
Query: 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNA 348
+ + E+I C++ L +EP + AL RA + + D E
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA------ 355
Query: 349 ILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGC 408
+ HN ++I L K Q L ++ DYY ++G++R
Sbjct: 356 ------------QEHNENDQQIREGL----EKAQRLLKQSQ-----KRDYYKILGVKRNA 394
Query: 409 SRSELERAHLLLSLRHKPDKAISFTER 435
+ E+ +A+ L+L+ PD + E+
Sbjct: 395 KKQEIIKAYRKLALQWHPDNFQNEEEK 421
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
L AG ++A+ F VDG P Y RA + + G+ ++ D K +
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGD---PD--NYIAYYRRATVFLAMGKSKAALPDLTKVI 87
Query: 310 ALEPSCIQALDTRALLL 326
L+ A R LL
Sbjct: 88 QLKMDFTAARLQRGHLL 104
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 229 ESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHR 288
E + L + R R+ A+ A +G Y+ AI KI+ AE R
Sbjct: 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL---EVCVW--DAELRELR 183
Query: 289 AFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326
A + G ++I+D L+ +A + L
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A + G +AI + E + + Y G S+++ + L
Sbjct: 184 AECFIKEGEPRKAISDLKAAS---KLKND--NTEAFYKISTLYYQLGDHELSLSEVRECL 238
Query: 310 ALEPSCIQALDTRALLLE 327
L+ + + +
Sbjct: 239 KLDQDHKRCFAHYKQVKK 256
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
L AG ++A+ F VDG P Y RA + + G+ ++ D K +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGD---PD--NYIAYYRRATVFLAMGKSKAALPDLTKVI 64
Query: 310 ALEPSCIQALDTRALLL 326
AL+ A R LL
Sbjct: 65 ALKMDFTAARLQRGHLL 81
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 1/106 (0%)
Query: 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS 295
+K L + +A + G Y++A + ++ + + +
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-TEPSVAEYTVRSKERICHCFSKD 285
Query: 296 GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341
+ E+I C++ L +EP + AL RA + + D E
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 235 QLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294
L + R R+ A+ A D Y+ AI KI+ AE RA +
Sbjct: 112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL---EVCVW--DAELRELRAECFIK 166
Query: 295 SGRIAESIADCNKTLALEPSCIQALDTRALLL 326
G ++I+D L+ +A + L
Sbjct: 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLY 198
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A L G A+ +K++ + + R G++ E+ D K L
Sbjct: 44 ATVFLAMGKSKAALPDLTKVIALK---MD--FTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
Query: 310 ALEPSCIQALDTRALLLE 327
PS + + + L++
Sbjct: 99 KSNPSEQEEKEAESQLVK 116
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A + G +AI + E + + Y G S+++ + L
Sbjct: 161 AECFIKEGEPRKAISDLKAAS---KLKSD--NTEAFYKISTLYYQLGDHELSLSEVRECL 215
Query: 310 ALEPSCIQAL 319
L+ +
Sbjct: 216 KLDQDHKRCF 225
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
Y +AI++++ ++ + Y + + Y S G + + + K L
Sbjct: 13 GNQFFRNKKYDDAIKYYNWALELK---ED---PVFYSNLSACYVSVGDLKKVVEMSTKAL 66
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347
L+P + L RA E + D + DL L L +
Sbjct: 67 ELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 14/100 (14%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS---------GRIAE 300
A D + +A++ + + + L Y+ A + E
Sbjct: 379 AEILTDKNDFDKALKQYDLAI---ELENK--LDGIYVGIAPLVGKATLLTRNPTVENFIE 433
Query: 301 SIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
+ K L+P QA A + + + + E
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A+ D +E +F K + + Y HR ++ D +K
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSN-----NSSVYYHRGQMNFILQNYDQAGKDFDKAK 331
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
L+P I A L DC
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFS 362
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A A + + FS+ R P+ E A +++ + +
Sbjct: 345 ACLAYRENKFDDCETLFSEAK---RKFPE--APEVPNFFAEILTDKNDFDKALKQYDLAI 399
Query: 310 ALEPSCIQALDTRALLL 326
LE A L+
Sbjct: 400 ELENKLDGIYVGIAPLV 416
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 6/78 (7%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
I A K ++ P+ Y++ A E +K L
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELF---PR---VNSYIYMALIMADRNDSTEYYNYFDKAL 297
Query: 310 ALEPSCIQALDTRALLLE 327
L+ + R +
Sbjct: 298 KLDSNNSSVYYHRGQMNF 315
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A ++EAI+++ ++ P Y + + Y S+G + + I K L
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELD---PN--EPVFYSNISACYISTGDLEKVIEFTTKAL 86
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347
++P +AL RA E++ D + DL L L +
Sbjct: 87 EIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 236 LLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYR 293
L+ +L R+ + LD ++ AI+ +K +D P+ + + A
Sbjct: 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-----PR--SEQAKIGLAQLKL 473
Query: 294 SSGRIAESIADCNKTLALEPSCIQALDTRAL-----LLETIRCLPDCLHDLEHLKLLYNA 348
+I E+I + L + + L + + +R P +E Y A
Sbjct: 474 QMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRA 533
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A+ D E + F K VD Y HR Y + D K
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPE-----YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
+L P + A LL +
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFN 368
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 10/77 (12%), Positives = 17/77 (22%), Gaps = 6/77 (7%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
I +A + ++ P Y+ A E K +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLH---PT---PNSYIFLALTLADKENSQEFFKFFQKAV 303
Query: 310 ALEPSCIQALDTRALLL 326
L P R +
Sbjct: 304 DLNPEYPPTYYHRGQMY 320
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 250 AIAALDAGLYSEAIRHFSKIVD---------GRRGA--PQGFLAECYMHRAFAYRSSGRI 298
A D G + AI+ + G + + + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 299 AESIADCNKTLALEPSCIQALDTRALLLE 327
+I K L+P QA A L
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKL 473
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 5/78 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A G ++E+ F++ P L E A G +I +
Sbjct: 351 ACLLYKQGKFTESEAFFNETK---LKFPT--LPEVPTFFAEILTDRGDFDTAIKQYDIAK 405
Query: 310 ALEPSCIQALDTRALLLE 327
LE + L+
Sbjct: 406 RLEEVQEKIHVGIGPLIG 423
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ + A+ + K ++ A + +RA AY G A ++ DC + +
Sbjct: 21 EQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAI 73
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKL 344
++P+ +A L L ++ + + + L+L
Sbjct: 74 CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ A++ +++++ + AP+ A Y +RA A E+IADCNK +
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMI---KRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAI 200
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
+P+ ++A +A ++ L L+
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLD 231
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A + EAI H++K + +RA A G +I+ N +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELH---KD---ITYLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 310 ALEPSCIQALDTRALLL 326
+
Sbjct: 66 EQGREMRADYKVISKSF 82
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-06
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ A++ +++ A Y +RA A E+IADCNK +
Sbjct: 13 EYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI 65
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
+P+ ++A +A ++ L L+
Sbjct: 66 EKDPNFVRAYIRKATAQIAVKEYASALETLD 96
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 256 AGLYSEAIRHFSK-IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314
G Y A+ +++ + A A + +RA + ++ + +K + +
Sbjct: 41 CGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97
Query: 315 CIQALDTRALLLETIRCLPDCLHDLE 340
++AL R+ LE + L + DL+
Sbjct: 98 DVKALYRRSQALEKLGRLDQAVLDLQ 123
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 9e-06
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 256 AGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP 313
Y EA + + + A Y +RA Y + +++ADC + L L+
Sbjct: 17 GRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRALELDG 69
Query: 314 SCIQALDTRALLLETIRCLPDCLHDLEH 341
++A + + + +L+
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQR 97
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 259 YSEAIRHFSK---IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315
A ++ K + + L E + A+ Y + ++ A LAL+P+
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254
Query: 316 IQALDTRALLLE 327
+A+D + LE
Sbjct: 255 KKAIDGLKMKLE 266
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316
GL ++A+ ++ K + LAECY+ +R+ G ++ A + P+
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKD--LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ 61
Query: 317 QALDTRALLL 326
A++L
Sbjct: 62 ALRVFYAMVL 71
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
Y EA + + + A Y +RA Y + +++ADC + L
Sbjct: 18 RLFVGRKYPEAAACYGRAITRNPLV-------AVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341
L+ ++A + + + +L+
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 102
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ + + + + P LAE Y + Y+ G++ E+I L
Sbjct: 40 SSIHFQCRRLDRSAHFSTLAI---KQNPL--LAEAYSNLGNVYKERGQLQEAIEHYRHAL 94
Query: 310 ALEPSCIQALDTRALLL 326
L+P I A L
Sbjct: 95 RLKPDFIDGYINLAAAL 111
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A + GL AI + + ++ + P + Y + A A + G +AE+ N L
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ---PH--FPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 310 ALEPSCIQALDTRALLL 326
L P+ +L+ A +
Sbjct: 299 RLCPTHADSLNNLANIK 315
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ G EAI H+ + + P + Y++ A A ++G + ++ L
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLK---PD--FIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 310 ALEPSCIQALDTRALLL 326
P LL
Sbjct: 129 QYNPDLYCVRSDLGNLL 145
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A AG + A RH ++ R P + + + R+ S +
Sbjct: 6 AHREYQAGDFEAAERHCMQLW---RQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 310 ALEPSCIQALDTRALLL 326
P +A +
Sbjct: 61 KQNPLLAEAYSNLGNVY 77
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+A ++ A+ + + + P A + + A Y G I +I + +
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLS---PN--HAVVHGNLACVYYEQGLIDLAIDTYRRAI 264
Query: 310 ALEPSCIQALDTRALLL 326
L+P A A L
Sbjct: 265 ELQPHFPDAYCNLANAL 281
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A + G EA+R + K ++ P+ A + + A + G++ E++ + +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVF---PE--FAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 310 ALEPSCIQALDTRALLL 326
+ P+ A L
Sbjct: 367 RISPTFADAYSNMGNTL 383
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A A + AG A++ + + P L ++ GR+ E+ A K +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYN---PD--LYCVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 310 ALEPSCIQALDTRALLL 326
+P+ A +
Sbjct: 163 ETQPNFAVAWSNLGCVF 179
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-04
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A A + G +EA ++ + R P A+ + A R G I E++ K L
Sbjct: 278 ANALKEKGSVAEAEDCYNTAL---RLCPT--HADSLNNLANIKREQGNIEEAVRLYRKAL 332
Query: 310 ALEPSCIQALDTRALLLE 327
+ P A A +L+
Sbjct: 333 EVFPEFAAAHSNLASVLQ 350
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 5/77 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
G AI HF K V P + Y++ + + ++A + L
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLD---PN--FLDAYINLGNVLKEARIFDRAVAAYLRAL 230
Query: 310 ALEPSCIQALDTRALLL 326
+L P+ A +
Sbjct: 231 SLSPNHAVVHGNLACVY 247
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 82/495 (16%), Positives = 155/495 (31%), Gaps = 128/495 (25%)
Query: 81 DMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF--- 137
D+L + + N D V D LS+E + + S D G F
Sbjct: 20 DILSVFEDAFV-DNFDCKDVQ-DMPKSILSKEEIDHIIM---SKDAVSGTLRLFWTLLSK 74
Query: 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197
++K V L N + + LM + Q + T + +
Sbjct: 75 QEEMVQKFVEEVLRINYK----F-------------LMS-PIKTEQRQPSMMTRMYIEQR 116
Query: 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD-- 255
L +D+ F+K+ V R + +L + LL R A +D
Sbjct: 117 DRLYNDNQVFAKYNV-----------SR----LQPYLKL---RQALLELRPAKNVLIDGV 158
Query: 256 AG-----LYSEAIRHFSKIVD-----------GRRGAPQGFLAECYMHRAFAYRSSGRIA 299
G + + + K+ +P+ L M + Y+
Sbjct: 159 LGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQ------ 208
Query: 300 ESIADCNKTLALEPSC-----IQALDTRALLLETIRCLPDCL---HDLEHLKLLYNA--- 348
D N T + S I ++ L + +CL ++++ K NA
Sbjct: 209 ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNL 264
Query: 349 ---IL---RDRKLP---GPAWKRHNVRYREIPG-------KLCA--LTTKIQELKQRVAS 390
IL R +++ A H L L + Q+L + V
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL- 323
Query: 391 GETGNVDYYALIG--LRRGCSRSELERAHLLLSLRHKPDKAI-SFTERCEFADER----D 443
T N ++I +R G + + + K I S E A+ R
Sbjct: 324 --TTNPRRLSIIAESIRDGLATWD----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 444 LDSVRDRAKMSALLLYRLLQRGYSSVMSNIMDE----EAAEKRRKTAT-AVTALQAATQV 498
L A + +LL + S + ++++ EK+ K +T ++ ++ +V
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 499 QQQAQ----NSLLEQ 509
+ + + S+++
Sbjct: 438 KLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 8e-05
Identities = 74/535 (13%), Positives = 143/535 (26%), Gaps = 181/535 (33%)
Query: 16 WLS--NRKIVDKYIRDARTLIAT-----QEHSEIASALSLLDAALALSPRLELALELKAR 68
WL+ N + + + L+ S+ +S + L ++ R L +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 69 SLLYLR---------------------RFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107
LL L RFK V D L + + S +++ D
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167
L K L D L P + + + ++A R + W
Sbjct: 306 LLL----KYL----DCRPQDL---PREVL-TTNPRRLSIIAESIR--DGLATWDNWK--- 348
Query: 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTM 227
H+ + ++ + L A +R+ + D S FP S + P +
Sbjct: 349 ---HVNCDKLTTIIESSLNVLEPAEYRK----MFDR---LSVFPPSAH------IPTILL 392
Query: 228 ---------TESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278
++ V L L+ ++ + ++ +Y E
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLEN---------- 441
Query: 279 GFLAECYMHRAF--AYRSSGRIAESIADCNKTLALEPSCIQALD-----------TRALL 325
E +HR+ Y + L LD
Sbjct: 442 ----EYALHRSIVDHYNI------PKTFDSDDLIPPY-----LDQYFYSHIGHHLKNIEH 486
Query: 326 LETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELK 385
E + D L+ +K+ RH+ G + +Q+LK
Sbjct: 487 PERMTLFRMVFLDFRFLE---------QKI------RHDSTAWNASGSILNT---LQQLK 528
Query: 386 QRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLD 445
+Y + ++ + L+ ++ F + E +
Sbjct: 529 ------------FY-----KPYICDNDPKYERLVNAILD-------FLPKIE------EN 558
Query: 446 SVRDRAKMSALLLYRLLQRGYSSVMSNIMDEEAAEKRRKTATAVTALQAATQVQQ 500
+ + LL+ +M E+ A +A QVQ+
Sbjct: 559 LICSKYT-------DLLRIA-------LMAEDEA----------IFEEAHKQVQR 589
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ A D + A+ FS + D + + Y + E+ +++
Sbjct: 13 GVLAADKKDWKGALDAFSAVQD--------PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64
Query: 310 ALEPSCIQALDTRALLL 326
+ A R +L
Sbjct: 65 NRDKHLAVAYFQRGMLY 81
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-05
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
G Y +A++H+++ + + A+ Y +RA Y ++ DC + +
Sbjct: 25 ECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECI 77
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKL 344
LEP+ I+ +A LE ++ + + L L
Sbjct: 78 QLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-05
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
G Y A+RH+++ D A Y +RA ++ DC+ +
Sbjct: 22 EYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCI 74
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKL 344
L+ I+ +A L +R E L++
Sbjct: 75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 8e-05
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
AL G +A++ +S+ +D Y +R+ AY G ++ D KT+
Sbjct: 13 KALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTV 65
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKL 344
L+P + +A LE + + E LK
Sbjct: 66 DLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL-----------AECYMHRAFAYRSSGRI 298
AA++AG +A+ +F + + + + ++ A AY+ +
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70
Query: 299 AESIADCNKTLALEPSCIQALDTRALLL 326
++ + L P+ + L+ A +
Sbjct: 71 DKAYLFYKELLQKAPNNVDCLEACAEMQ 98
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A Y AI+ +S+ ++ A Y +R+ AY + ++ D + +
Sbjct: 22 DYFKAKDYENAIKFYSQAIELNPSN-------AIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKL 344
L+ I+ RA + L D E +K+
Sbjct: 75 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 4/81 (4%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL----AECYMHRAFAYRSSGRIAESIADC 305
+ A G + A + F ++ + + R + AE++
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259
Query: 306 NKTLALEPSCIQALDTRALLL 326
+ L L P +
Sbjct: 260 RQALVLIPQNASTYSAIGYIH 280
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 15/99 (15%)
Query: 256 AGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP 313
GLY EA+ + + + Y ++A A G ++I C + L
Sbjct: 17 QGLYREAVHCYDQLITAQPQN-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 314 SCIQALDTRALLL------ETIRCLPDCLHDLEHLKLLY 346
+ L + + + +++ L Y
Sbjct: 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
A +G Y +A F + + + ++ ++ G+ +I +
Sbjct: 28 AFNQYQSGXYEDAHXVFQALCVLDH-----YDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341
++ + A L L + L
Sbjct: 83 VMDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
++ G A++ + + P G E Y AYR G +++ + +
Sbjct: 7 IKELINQGDIENALQALEEFLQTE---PVGK-DEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Query: 310 ALEP 313
L P
Sbjct: 63 ELNP 66
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 250 AIAALDAGLYSEAIRHFSKIVD--GRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNK 307
+ A + AI HF + + + + A + + AYR +I N+
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541
Query: 308 TLALEPSCIQALDTRALLLE 327
L L + AL+
Sbjct: 542 GLLLSTNDANVHTAIALVYL 561
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 9e-04
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 252 AALDAGLYSEAIRHFSK--IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
AA+ YS+AI +++ + +RA AY +SG+ ++ D
Sbjct: 20 AAMARKEYSKAIDLYTQALSIAPAN-------PIYLSNRAAAYSASGQHEKAAEDAELAT 72
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLE 340
++P +A L + E
Sbjct: 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYE 103
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.87 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.85 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.81 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.78 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.76 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.76 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.74 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.74 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.74 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.74 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.71 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.7 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.7 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.7 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.69 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.68 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.63 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.62 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.62 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.61 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.6 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.56 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.55 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.54 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.53 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.5 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.47 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.47 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.46 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.46 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.45 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.45 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.43 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.42 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.38 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.37 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.37 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.36 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.33 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.31 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.3 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.29 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.29 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.29 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.28 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.27 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.27 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.27 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.26 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.26 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.26 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.25 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.2 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.19 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.18 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.17 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.17 | |
| 2qwo_B | 92 | Putative tyrosine-protein phosphatase auxilin; cha | 99.16 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.16 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.16 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 99.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.15 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 99.13 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.13 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 99.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.12 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 99.12 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.11 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 99.11 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 99.11 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 99.11 | |
| 2ys8_A | 90 | RAB-related GTP-binding protein RABJ; DNAJ domain, | 99.11 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.1 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 99.09 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 99.09 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.09 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.08 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 99.07 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 99.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.07 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.06 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.04 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 99.03 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.03 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 99.0 | |
| 3ag7_A | 106 | Putative uncharacterized protein F9E10.5; J-domain | 99.0 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.98 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 98.98 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 98.96 | |
| 1faf_A | 79 | Large T antigen; J domain, HPD motif, anti-paralle | 98.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.95 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 98.93 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 98.92 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.91 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 98.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.89 | |
| 2guz_A | 71 | Mitochondrial import inner membrane translocase su | 98.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.87 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 98.84 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.84 | |
| 1n4c_A | 182 | Auxilin; four helix bundle, protein binding; NMR { | 98.82 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 98.79 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 98.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.7 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.69 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.65 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 98.64 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 98.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.54 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.53 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.44 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 98.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.37 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.14 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.12 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.03 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 97.98 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.88 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.81 | |
| 2guz_B | 65 | Mitochondrial import inner membrane translocase su | 97.75 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.59 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.48 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.33 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.09 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.06 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.61 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.5 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.17 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 96.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.84 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.46 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.88 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.67 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.48 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 89.51 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 88.9 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 88.09 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.02 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 85.88 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 85.09 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 83.12 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.06 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 82.68 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 82.41 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.46 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 81.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.51 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.36 |
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=254.24 Aligned_cols=298 Identities=17% Similarity=0.216 Sum_probs=244.6
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
++..|..++ ..|++.+|+..|++++.++|.+..++..+|.+|..+|++++|+..|++++. ..|.+
T Consensus 146 ~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~--------- 210 (450)
T 2y4t_A 146 LRSQALNAF---GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK---LKNDN--------- 210 (450)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH---HHCSC---------
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCC---------
Confidence 344455555 689999999999999999999999999999999999999999999999662 22211
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
...|+.+|.+|+..|++++|+..|+++
T Consensus 211 -----------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 211 -----------------------------------------------------TEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 235788999999999999999999999
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008039 186 KRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRH 265 (580)
Q Consensus 186 l~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~ 265 (580)
+.+ +|++..+...+..+..+......|..++..|+|++|+..
T Consensus 238 ~~~--------------------------------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 279 (450)
T 2y4t_A 238 LKL--------------------------------------DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279 (450)
T ss_dssp HHH--------------------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHh--------------------------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 876 266777777777777888888889999999999999999
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 266 FSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 266 y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+++.+ .|.+......++.++|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 280 ~~~~l~~-~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 280 YESVMKT-EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHH-CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhc-CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999997 343222335689999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCHHHHHHHHHHHHhhcC
Q 008039 346 YNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSRSELERAHLLLSLRHK 425 (580)
Q Consensus 346 ~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~h 425 (580)
.|+.. .+...+..+... +++ ....+||.+||+.+.++..+++++|+++++++|
T Consensus 359 ---------~p~~~---------~~~~~l~~~~~~---~~~------~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 359 ---------NENDQ---------QIREGLEKAQRL---LKQ------SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp ---------SSSCH---------HHHHHHHHHHHH---HHH------HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred ---------CcchH---------HHHHHHHHHHHH---hhc------ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 23211 111112222221 121 236689999999999999999999999999999
Q ss_pred CCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 426 PDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 426 PDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
||+.+... .+..++..|+.|++||++ ++|+..
T Consensus 412 pd~~~~~~-----------------~~~~a~~~~~~i~~ay~~-L~d~~~ 443 (450)
T 2y4t_A 412 PDNFQNEE-----------------EKKKAEKKFIDIAAAKEV-LSDPEM 443 (450)
T ss_dssp GGGCCSHH-----------------HHHHHHHHHHHHHHHHHH-SSGGGG
T ss_pred CCCCCCch-----------------HHHHHHHHHHHHHHHHHH-hCCHHH
Confidence 99986533 246889999999999995 666653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=197.62 Aligned_cols=196 Identities=20% Similarity=0.145 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
..-++..|..++ ..|++++|+..|+++|+++|.++.++..+|.++..+|++++|+..|++++ ++.|++.
T Consensus 5 ~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~P~~~----- 73 (217)
T 2pl2_A 5 EQNPLRLGVQLY---ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV---ARTPRYL----- 73 (217)
T ss_dssp CHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCH-----
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCcH-----
Confidence 345677788777 68999999999999999999999999999999999999999999999966 3333221
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----------
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---------- 172 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---------- 172 (580)
..|+.+|.++..+
T Consensus 74 ---------------------------------------------------------~a~~~lg~~~~~~~~~~~~~~~~ 96 (217)
T 2pl2_A 74 ---------------------------------------------------------GGYMVLSEAYVALYRQAEDRERG 96 (217)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHTCSSHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhhhhhhhccc
Confidence 3678899999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+..|++++++. |++..+...+ |.
T Consensus 97 ~g~~~~A~~~~~~al~~~--------------------------------------P~~~~~~~~l------------g~ 126 (217)
T 2pl2_A 97 KGYLEQALSVLKDAERVN--------------------------------------PRYAPLHLQR------------GL 126 (217)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HH
T ss_pred ccCHHHHHHHHHHHHHhC--------------------------------------cccHHHHHHH------------HH
Confidence 99999999999999873 5555554443 99
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
+++..|++++|+..|++++++. .++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|+
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHcCChHHHHHHHHHHHhcc------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 9999999999999999999982 4789999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 008039 332 LPDCLHDLEHL 342 (580)
Q Consensus 332 ~~eAi~~~~~a 342 (580)
+++|+..|+++
T Consensus 201 ~~~A~~~~~~~ 211 (217)
T 2pl2_A 201 AEEAARAAALE 211 (217)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999999987
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=221.80 Aligned_cols=250 Identities=14% Similarity=0.015 Sum_probs=190.3
Q ss_pred hChhhHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 37 QEHSEIASALSLLDAAL--------ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 37 ~~~~d~~~Al~~~~~Al--------~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
...|++.+|++.|++++ +++|.+..++..+|.+|+.+|+|++|+..|++++ +.+|+++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~p~~~----------- 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA---ERVGWRW----------- 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHCCCH-----------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh---ccCcchH-----------
Confidence 36899999999999999 9999999999999999999999999999999966 3333222
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
..|+.+|.+|+.+|++++|+..|++++++
T Consensus 468 ---------------------------------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 468 ---------------------------------------------------RLVWYRAVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36888999999999999999999999988
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSK 268 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~ 268 (580)
+ |++..+...+ |.+++..|+|++ +..|++
T Consensus 497 ~--------------------------------------P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~ 525 (681)
T 2pzi_A 497 F--------------------------------------PGELAPKLAL------------AATAELAGNTDE-HKFYQT 525 (681)
T ss_dssp S--------------------------------------TTCSHHHHHH------------HHHHHHHTCCCT-TCHHHH
T ss_pred C--------------------------------------CCChHHHHHH------------HHHHHHcCChHH-HHHHHH
Confidence 3 5444444333 999999999999 999999
Q ss_pred HHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHHH
Q 008039 269 IVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC-LHDLEHLKLLYN 347 (580)
Q Consensus 269 AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l~~ 347 (580)
++++ .|.+..+|+++|.++..+|++++|+.+|+++++++|++..+++++|.++...++++++ ...|+++++..+
T Consensus 526 al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 526 VWST-----NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHh-----CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 9997 4558899999999999999999999999999999999999999999999998887777 788888877643
Q ss_pred HhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhhcCCCCccchhhhhcccCCCCH--HHHHHHHHHHHhhcC
Q 008039 348 AILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVASGETGNVDYYALIGLRRGCSR--SELERAHLLLSLRHK 425 (580)
Q Consensus 348 ~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~~~~~~~~d~y~iLgv~~~a~~--~ei~~ayr~lal~~h 425 (580)
... +.+. +...+.. .+...+-.++ .....+||++||+..+... .+|+++||++|..-+
T Consensus 601 ~~~-----~~~~------~~~~l~~---~ll~~~l~~~------~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~ 660 (681)
T 2pzi_A 601 ALP-----PTEP------RVLQIRA---LVLGGALDWL------KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAP 660 (681)
T ss_dssp TSC-----TTST------THHHHHH---HHHHHHHHHH------TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCS
T ss_pred hCC-----CCcH------HHHHHHH---HHHHHHHHHH------HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 211 1100 0001100 1111111122 2445569999999766655 679999999988554
Q ss_pred CC
Q 008039 426 PD 427 (580)
Q Consensus 426 PD 427 (580)
++
T Consensus 661 ~~ 662 (681)
T 2pzi_A 661 TQ 662 (681)
T ss_dssp SH
T ss_pred Ch
Confidence 44
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-20 Score=195.01 Aligned_cols=232 Identities=19% Similarity=0.153 Sum_probs=190.9
Q ss_pred CCcccCccccccc---ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHH
Q 008039 3 TSPALTCTEKKHW---WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDV 79 (580)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eA 79 (580)
+||..+.+-..+| +..+|..+..++..|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|++++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A 79 (450)
T 2y4t_A 3 HHHHHSSGVDLGTENLYFQSMADVEKHLELGKKLL---AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79 (450)
T ss_dssp --------------------CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHH
Confidence 4455444444455 5678889999999999988 689999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccch
Q 008039 80 ADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQ 159 (580)
Q Consensus 80 i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~ 159 (580)
+..|++++. ..|++ .
T Consensus 80 ~~~~~~al~---~~p~~--------------------------------------------------------------~ 94 (450)
T 2y4t_A 80 LPDLTKVIQ---LKMDF--------------------------------------------------------------T 94 (450)
T ss_dssp HHHHHHHHH---HCTTC--------------------------------------------------------------H
T ss_pred HHHHHHHHh---cCCCc--------------------------------------------------------------H
Confidence 999999662 22211 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH---HHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE---SVSQL 236 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~---~~~~l 236 (580)
+.|+.+|.+|..+|++++|+..|++++++ +|+.. .+...
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~ 136 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------------------------------------NPSENEEKEAQSQ 136 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------------------------------CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------------------CCCChhhHHHHHH
Confidence 46788999999999999999999998865 35555 55555
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+..+.........|..++..|+|++|+..|.+++.. .|....+++++|.+|..+|++++|+..|.+++.++|+++
T Consensus 137 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 555555666777899999999999999999999997 345789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++...|++++|+..|++++.+
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999877
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=199.24 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=173.8
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-hHHHHHHHHhhhhhhhhcCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR-FKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r-~~eAi~~~~~~l~~l~~~~~~ 96 (580)
.+|+...-|...+..+. ..|++.+|+..|+++|.++|.+..+|..+|.+|..+|+ |++|+.+|+++| .++|++
T Consensus 92 ~~p~~~~a~~~lg~~~~---~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al---~l~P~~ 165 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQ---RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---EEQPKN 165 (382)
T ss_dssp CCHHHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTTC
T ss_pred CChhhHHHHHHHHHHHH---HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH---HHCCCC
Confidence 34556666777776665 57899999999999999999999999999999999998 999999999966 333321
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
.+.|+.+|.++..+|+++
T Consensus 166 --------------------------------------------------------------~~a~~~~g~~~~~~g~~~ 183 (382)
T 2h6f_A 166 --------------------------------------------------------------YQVWHHRRVLVEWLRDPS 183 (382)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHHHTCCT
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 247889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|+.+|+++++++ |++..+...+ |.++...
T Consensus 184 eAl~~~~kal~ld--------------------------------------P~~~~a~~~l------------g~~~~~~ 213 (382)
T 2h6f_A 184 QELEFIADILNQD--------------------------------------AKNYHAWQHR------------QWVIQEF 213 (382)
T ss_dssp THHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHhC--------------------------------------ccCHHHHHHH------------HHHHHHc
Confidence 9999999999883 5555554443 9999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAES-----IADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eA-----l~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
|+|++|+..|+++|.+ .|.+..+|+++|.++.. .|.+++| +.+|.++|.++|++..+|+.+|.++..+|
T Consensus 214 g~~~eAl~~~~~al~l-----~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g 288 (382)
T 2h6f_A 214 KLWDNELQYVDQLLKE-----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288 (382)
T ss_dssp TCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence 9999999999999998 45589999999999999 5555888 59999999999999999999999999988
Q ss_pred --ChhHHHHHHHHH
Q 008039 331 --CLPDCLHDLEHL 342 (580)
Q Consensus 331 --~~~eAi~~~~~a 342 (580)
++++|+..++++
T Consensus 289 ~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 289 LSKYPNLLNQLLDL 302 (382)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHh
Confidence 699998888776
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-19 Score=183.80 Aligned_cols=212 Identities=16% Similarity=0.211 Sum_probs=184.9
Q ss_pred HHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchh
Q 008039 27 IRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSS 106 (580)
Q Consensus 27 ~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (580)
+..+..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|++++|+..|++++ ...|.+
T Consensus 124 ~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~---------- 187 (359)
T 3ieg_A 124 RSQALDAF---DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS---KLKSDN---------- 187 (359)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCSCC----------
T ss_pred HHHHHHHH---HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCC----------
Confidence 33455555 68999999999999999999999999999999999999999999999965 222111
Q ss_pred hHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008039 107 QQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGK 186 (580)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al 186 (580)
...|+.+|.++..+|++++|+..|++++
T Consensus 188 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 188 ----------------------------------------------------TEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1357889999999999999999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHF 266 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y 266 (580)
++. |+...+...+..+..+......|..++..|+|++|+..|
T Consensus 216 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 216 KLD--------------------------------------QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HHC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhC--------------------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 772 667777778888888888888999999999999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 267 SKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 267 ~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.. .|.+......++.++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 258 ~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 258 ESVMKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhc-CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999997 344333334668899999999999999999999999999999999999999999999999999999999877
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.1e-19 Score=180.28 Aligned_cols=213 Identities=21% Similarity=0.187 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
.++.++..|..++ ..|++.+|+..|++++..+|.++.++..+|.+++.+|++++|+..|++++. ..|++
T Consensus 2 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~----- 70 (359)
T 3ieg_A 2 DVEKHLELGKKLL---AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDF----- 70 (359)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCc-----
Confidence 3567888898888 689999999999999999999999999999999999999999999999662 22211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...|+.+|.++..+|++++|+..
T Consensus 71 ---------------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 71 ---------------------------------------------------------TAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHcCChHHHHHH
Confidence 13578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMT---ESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP---d~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
|++++.+ +| +...+...+..+.........|..++..|+
T Consensus 94 ~~~~~~~--------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 94 FKKVLKS--------------------------------------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTS--------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhc--------------------------------------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999865 35 556666666666667777788999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
|++|+..|.+++.. .|....++.++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..+|++++|+..
T Consensus 136 ~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 136 YTAAITFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999997 3457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|++++++
T Consensus 211 ~~~a~~~ 217 (359)
T 3ieg_A 211 VRECLKL 217 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999887
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=189.00 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=142.7
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+..+|....-++..+..++ ..|++++|+..++.++..+|.++.++..+|.++...|++++|++.|++++ ...|+
T Consensus 26 ~~~~p~~~~~~~~l~~~~~---~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~ 99 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL---RLKPD 99 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT
T ss_pred HHhCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH---HcCcc
Confidence 4456666666666666665 56778888888888888888888888888888888888888888888855 34443
Q ss_pred CCCCCCCCchhhHhHHHHHhh-hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 96 DSGSVSSDSSSQQLSRERVKL-LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
+.... ...... ...++ ..+..+.+...+..+++ ....+..+|.++..+|+
T Consensus 100 ~~~~~----------~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 100 FIDGY----------INLAAALVAAGD-----------------MEGAVQAYVSALQYNPD--LYCVRSDLGNLLKALGR 150 (388)
T ss_dssp CHHHH----------HHHHHHHHHHSC-----------------SSHHHHHHHHHHHHCTT--CTHHHHHHHHHHHTTSC
T ss_pred hHHHH----------HHHHHHHHHcCC-----------------HHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccC
Confidence 32110 000000 00010 00001111111222222 22345566777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++.+. |+...+...+ |..+.
T Consensus 151 ~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------~~~~~ 180 (388)
T 1w3b_A 151 LEEAKACYLKAIETQ--------------------------------------PNFAVAWSNL------------GCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHH
Confidence 777777777766552 3333222222 66666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|++++|+..|.+++.+ .|....+++++|.++...|++++|+..+.+++.++|+++.++..+|.++...|++++
T Consensus 181 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 255 (388)
T 1w3b_A 181 AQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp TTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665 233556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..|++++++
T Consensus 256 A~~~~~~al~~ 266 (388)
T 1w3b_A 256 AIDTYRRAIEL 266 (388)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 66666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.5e-20 Score=190.98 Aligned_cols=240 Identities=15% Similarity=0.090 Sum_probs=183.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
..+|....-|...|..+. ..|++++|+..|++++.++|.+..++..+|.++..+|++++|+..|++++ +..|++
T Consensus 61 ~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~p~~ 134 (388)
T 1w3b_A 61 KQNPLLAEAYSNLGNVYK---ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---QYNPDL 134 (388)
T ss_dssp HHCTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---HHCTTC
T ss_pred hcCCCchHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCc
Confidence 457778888889998887 68999999999999999999999999999999999999999999999965 455544
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
... ......++.... ...+..+-+...+..+++ ....|+.+|.++...|+++
T Consensus 135 ~~~----------~~~l~~~~~~~g----------------~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 135 YCV----------RSDLGNLLKALG----------------RLEEAKACYLKAIETQPN--FAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp THH----------HHHHHHHHHTTS----------------CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHH
T ss_pred HHH----------HHHHHHHHHHcc----------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHH
Confidence 311 000111111100 011111111122222222 3456788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|+..|++++++. |+...+...+ |..+...
T Consensus 187 ~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------g~~~~~~ 216 (388)
T 1w3b_A 187 LAIHHFEKAVTLD--------------------------------------PNFLDAYINL------------GNVLKEA 216 (388)
T ss_dssp HHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHTT
T ss_pred HHHHHHHHHHhcC--------------------------------------CCcHHHHHHH------------HHHHHHc
Confidence 9999999999873 4443333222 8888899
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.++++++|+++.+++.+|.++...|++++|+
T Consensus 217 ~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987 34478888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 337 HDLEHLKLL 345 (580)
Q Consensus 337 ~~~~~al~l 345 (580)
..|++++++
T Consensus 292 ~~~~~al~~ 300 (388)
T 1w3b_A 292 DCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999877
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=192.59 Aligned_cols=240 Identities=10% Similarity=0.059 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+..++..|..++ ..|++.+|+..|++++.++|.++.++..+|.++..+|+|++|+..|++++ ...|.+
T Consensus 65 ~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~------ 132 (365)
T 4eqf_A 65 WPGAFEEGLKRL---KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL---ELQPNN------ 132 (365)
T ss_dssp CTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC------
T ss_pred hhHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCC------
Confidence 445788888887 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
...|+.+|.+|..+|++++|+..|
T Consensus 133 --------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~ 156 (365)
T 4eqf_A 133 --------------------------------------------------------LKALMALAVSYTNTSHQQDACEAL 156 (365)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHccccHHHHHHHH
Confidence 135788899999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 008039 183 QTGKRLATAAFRRESISLS-DDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL-------LLRRRTAAIAAL 254 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~-~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~-------~~~~k~~G~~~~ 254 (580)
++++++.+.....- ... ........++. .....-+...+...+..... ...+...|..++
T Consensus 157 ~~al~~~p~~~~~~--~~~~~~~~~~~~l~~----------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 157 KNWIKQNPKYKYLV--KNKKGSPGLTRRMSK----------SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HHHHHHCHHHHCC-------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHhCccchHHH--hhhccchHHHHHHHH----------HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 99998865421100 000 00000000000 00000122333333333221 222345599999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999997 345788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008039 335 CLHDLEHLKLLYN 347 (580)
Q Consensus 335 Ai~~~~~al~l~~ 347 (580)
|+..|++++++.+
T Consensus 300 A~~~~~~al~~~~ 312 (365)
T 4eqf_A 300 AVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc
Confidence 9999999999854
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-19 Score=173.35 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...+.+...|..++ ..|++.+|+..|++++.++ .++.++..+|.++..+|+|++|+..|++++. ..|.+...
T Consensus 3 ~~a~~~~~~g~~~~---~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~- 74 (258)
T 3uq3_A 3 SMADKEKAEGNKFY---KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE---QGREMRAD- 74 (258)
T ss_dssp HHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCC-
T ss_pred hHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccccc-
Confidence 45677888898888 6899999999999999999 9999999999999999999999999999663 22211100
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
.......|+.+|.++..+|++++|+.
T Consensus 75 ------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 75 ------------------------------------------------------YKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------------------------------hHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 00012367889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-----KLLLRRRTAAIAALD 255 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-----k~~~~~k~~G~~~~~ 255 (580)
.|++++.+.+...- + ..+ .+...+...+..+ .........|..++.
T Consensus 101 ~~~~a~~~~~~~~~----------~--~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 101 YYQKSLTEHRTADI----------L--TKL-----------------RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHCCCHHH----------H--HHH-----------------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCchhHH----------H--HHH-----------------hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 99999986311000 0 000 0000011111100 111223345999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
.|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|
T Consensus 152 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999997 3447899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 336 LHDLEHLKLLYN 347 (580)
Q Consensus 336 i~~~~~al~l~~ 347 (580)
+..|++++++.+
T Consensus 227 ~~~~~~a~~~~~ 238 (258)
T 3uq3_A 227 LETLDAARTKDA 238 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCh
Confidence 999999999853
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=180.15 Aligned_cols=210 Identities=8% Similarity=-0.019 Sum_probs=177.1
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhc
Q 008039 14 HWWLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMA 93 (580)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~ 93 (580)
.+....+..++-++..+..++ ..|++.+|+..|++++..+|.+..++..++.+++.+|++++|+..+++++. ..
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~ 86 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHY---YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LY 86 (330)
T ss_dssp -------CCCTTHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HC
T ss_pred HHHhhchhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hC
Confidence 444455556666778888888 579999999999999999999999999999999999999999999999662 22
Q ss_pred CCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC
Q 008039 94 NDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG 173 (580)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG 173 (580)
|.+ ...|+.+|.+++.+|
T Consensus 87 ~~~--------------------------------------------------------------~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 87 PSN--------------------------------------------------------------PVSWFAVGCYYLMVG 104 (330)
T ss_dssp TTS--------------------------------------------------------------THHHHHHHHHHHHSC
T ss_pred cCC--------------------------------------------------------------HHHHHHHHHHHHHhh
Confidence 211 135788999999999
Q ss_pred -CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 174 -LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 174 -~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+..|++++++. |+...+...+ |..
T Consensus 105 ~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~~l------------~~~ 134 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE--------------------------------------KTYGPAWIAY------------GHS 134 (330)
T ss_dssp SCHHHHHHHHHHHHTTC--------------------------------------TTCTHHHHHH------------HHH
T ss_pred hhHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH------------HHH
Confidence 9999999999998652 4434443333 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..+|++
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQL-----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHccCHHHHHHHHHHHHHh-----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 99999999999999999997 3335678889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLLY 346 (580)
Q Consensus 333 ~eAi~~~~~al~l~ 346 (580)
++|+..|++++++.
T Consensus 210 ~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 210 KTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999885
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.1e-19 Score=163.74 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
.++.+|..+|.+++.+|+|++|++.|++++ +.+|++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al---~~~p~~~---------------------------------------- 39 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVL---KADPNNV---------------------------------------- 39 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCH----------------------------------------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----------------------------------------
Confidence 356777888888888888888888888855 3333211
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
..|+.+|.+|..+|++++|+..+.+++...
T Consensus 40 ----------------------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 69 (184)
T 3vtx_A 40 ----------------------ETLLKLGKTYMDIGLPNDAIESLKKFVVLD---------------------------- 69 (184)
T ss_dssp ----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------
T ss_pred ----------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------------
Confidence 356778888888888888888888877652
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|+...+...+ |..+...++++.|+..+.+++.+ .|.+..++..+|.++..+|+
T Consensus 70 ----------~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 70 ----------TTSAEAYYIL------------GSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp ----------CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred ----------chhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 3334433333 77888888888888888888886 34467788888888888888
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.
T Consensus 123 ~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888887774
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.3e-19 Score=169.73 Aligned_cols=201 Identities=10% Similarity=0.062 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....|+..|..++ ..|++.+|+..|++++..+|.+..++..+|.+++.+|++++|+..|++++. ..|.
T Consensus 22 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~------ 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGS---EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---LDSS------ 89 (243)
T ss_dssp -----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT------
T ss_pred HHHHHHHHHHHHH---HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCc------
Confidence 3445677787777 789999999999999999999999999999999999999999999999662 2111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
....++.+|.++..+|++++|+..
T Consensus 90 --------------------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 90 --------------------------------------------------------AATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------------chHHHHHHHHHHHHhccHHHHHHH
Confidence 123578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++. |+...+...+ |..++..|+|++
T Consensus 114 ~~~~~~~~--------------------------------------~~~~~~~~~~------------a~~~~~~~~~~~ 143 (243)
T 2q7f_A 114 FEKALRAG--------------------------------------MENGDLFYML------------GTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHHT--------------------------------------CCSHHHHHHH------------HHHHHHTSCHHH
T ss_pred HHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHhccHHH
Confidence 99999773 3333333222 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEH 341 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~ 341 (580)
|+..|.+++.. .|....+++++|.++...|++++|+..+.+++.++|++..+++.+|.++..+|++++|+..|++
T Consensus 144 A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 144 ALPYLQRAVEL-----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999997 3447889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 008039 342 LKLL 345 (580)
Q Consensus 342 al~l 345 (580)
++++
T Consensus 219 ~~~~ 222 (243)
T 2q7f_A 219 AIDI 222 (243)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 9888
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-19 Score=202.01 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=159.3
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
-+|+++.+|.++|.+|..+|+|++|+++|+++| +++|++.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl---~l~P~~~------------------------------------- 43 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKAL---EVFPEFA------------------------------------- 43 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSCCH-------------------------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH-------------------------------------
Confidence 479999999999999999999999999999966 3433222
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
.+|++||.+|..+|++++|+..|+++++++
T Consensus 44 -------------------------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~------------------------- 73 (723)
T 4gyw_A 44 -------------------------AAHSNLASVLQQQGKLQEALMHYKEAIRIS------------------------- 73 (723)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 368899999999999999999999999883
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~ 294 (580)
|++..+...+ |+++...|+|++|+..|+++|++ .|.++.+|+|+|.+|..
T Consensus 74 -------------P~~~~a~~nL------------g~~l~~~g~~~~A~~~~~kAl~l-----~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 74 -------------PTFADAYSNM------------GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKD 123 (723)
T ss_dssp -------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHH
Confidence 5555554433 99999999999999999999998 45589999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCC
Q 008039 295 SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLP 356 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p 356 (580)
+|++++|+..|++||+++|++..+++++|.++..+|++++|+..|++++++.+..+..+.++
T Consensus 124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l~ 185 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLP 185 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999977666555433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-18 Score=176.15 Aligned_cols=240 Identities=11% Similarity=0.060 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
..++..|..++ ..|++.+|+..|++++.++|.+..++..+|.+++.+|++++|+..|++++ +..|.+
T Consensus 65 ~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---~~~~~~------- 131 (368)
T 1fch_A 65 PQPFEEGLRRL---QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL---ELKPDN------- 131 (368)
T ss_dssp SSHHHHHHHHH---HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC-------
T ss_pred HHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH---hcCCCC-------
Confidence 34667777777 68999999999999999999999999999999999999999999999966 222211
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
...++.+|.+|..+|++++|+..|+
T Consensus 132 -------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (368)
T 1fch_A 132 -------------------------------------------------------QTALMALAVSFTNESLQRQACEILR 156 (368)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1357889999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCC--CCCC---CCCChHHHHHHHHHHH-------HHHHHHHHHH
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPA--TPPR---TMTESESVSQLLSHIK-------LLLRRRTAAI 251 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~--~~~~---~dPd~~~~~~ll~~~k-------~~~~~k~~G~ 251 (580)
+++.+.+..... ...++.......... ..+. ..-+...+...+..+. ....+...|.
T Consensus 157 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 157 DWLRYTPAYAHL-----------VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp HHHHTSTTTGGG-----------CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred HHHHhCcCcHHH-----------HHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 999875321100 000000000000000 0000 0000111111111111 1122344599
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..|++++.++|++..+++.+|.++..+|+
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999997 344788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 332 ~~eAi~~~~~al~l~~ 347 (580)
+++|+..|++++++.+
T Consensus 301 ~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 301 HREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999999853
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-18 Score=161.56 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-|+..|..+. ..|++++|+..|+++|+++|+++.++..+|.++..+|++++|+..+.+++. ..|.
T Consensus 4 ~~~iy~~lG~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~------ 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKR---TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTT------ 71 (184)
T ss_dssp CHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCC------
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCch------
Confidence 3455778888877 689999999999999999999999999999999999999999999998652 2111
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
....+..+|.++...++++.|+..
T Consensus 72 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 72 --------------------------------------------------------SAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------------------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 113577789999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
+.+++.+. |++..+...+ |..++..|+|++
T Consensus 96 ~~~a~~~~--------------------------------------~~~~~~~~~l------------g~~~~~~g~~~~ 125 (184)
T 3vtx_A 96 LQRAIALN--------------------------------------TVYADAYYKL------------GLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHHhC--------------------------------------ccchHHHHHH------------HHHHHHhCCchh
Confidence 99998773 4444444333 999999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|+..|++++++ .|.++.+|+++|.+|..+|++++|+.+|++||+++|+++.
T Consensus 126 A~~~~~~~l~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 126 AIEAYEKTISI-----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHh-----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999997 4558899999999999999999999999999999998643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=168.60 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=148.1
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
|.++.++..+|.+++..|++++|+..|++++ +..|++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~--------------------------------------- 39 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL---KENPQDP--------------------------------------- 39 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTSSSCH---------------------------------------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH---------------------------------------
Confidence 7788999999999999999999999999965 3333221
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
..|+.+|.++..+|++++|+..|++++++.
T Consensus 40 -----------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------- 69 (217)
T 2pl2_A 40 -----------------------EALYWLARTQLKLGLVNPALENGKTLVART--------------------------- 69 (217)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------
T ss_pred -----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------------
Confidence 367889999999999999999999999873
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhccCCCCCcccHHHH
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-----------GLYSEAIRHFSKIVDGRRGAPQGFLAECY 285 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-----------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~ 285 (580)
|++..+...+ |..+... |++++|+..|.+++++ .|.+..++
T Consensus 70 -----------P~~~~a~~~l------------g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~~ 121 (217)
T 2pl2_A 70 -----------PRYLGGYMVL------------SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPLH 121 (217)
T ss_dssp -----------TTCHHHHHHH------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHH
T ss_pred -----------CCcHHHHHHH------------HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHHH
Confidence 5555554444 8888888 9999999999999997 45588999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 286 MHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 286 ~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|.++..+|++++|+..|+++++++ +++.+++.+|.++..+|++++|+..|++++++
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999888
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=169.28 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
.++..|..++ ..|++++|+..|+++++++|.+..++..+|.+++.+|+|++|+..|++++. .+.++.
T Consensus 5 ~~~~~a~~~~---~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~~------ 71 (272)
T 3u4t_A 5 VEFRYADFLF---KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS----KVNATK------ 71 (272)
T ss_dssp CHHHHHHHHH---TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT----TSCTTT------
T ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh----ccCchh------
Confidence 3567787887 789999999999999999999999999999999999999999999999662 111110
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.....|+.+|.++..+|++++|+..|++
T Consensus 72 ----------------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 72 ----------------------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp ----------------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0112578899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++++. |+...+...+ |..++..|+|++|+.
T Consensus 100 a~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 100 AVDRD--------------------------------------TTRLDMYGQI------------GSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHS--------------------------------------TTCTHHHHHH------------HHHHHHTTCHHHHHH
T ss_pred HHhcC--------------------------------------cccHHHHHHH------------HHHHHHccCHHHHHH
Confidence 99873 3333333333 999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC---LPDCLHDLEH 341 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~---~~eAi~~~~~ 341 (580)
.|.+++.+ .|....+++++|......+++++|+..+.++++++|++..+++.+|.++..+|+ +++|+..|++
T Consensus 130 ~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 130 YMEKQIRP-----TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHGGGCCS-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHhhc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999997 455789999999444445699999999999999999999999999999999999 9999999999
Q ss_pred HHHHH
Q 008039 342 LKLLY 346 (580)
Q Consensus 342 al~l~ 346 (580)
++++.
T Consensus 205 a~~~~ 209 (272)
T 3u4t_A 205 LIEVC 209 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99884
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2e-18 Score=174.28 Aligned_cols=243 Identities=10% Similarity=0.040 Sum_probs=177.8
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
.+|....-+...+..++ ..|++.+|+..+++++.++|.++.++..+|.+++.+| ++++|+..|++++ ...|.+
T Consensus 51 ~~p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~---~~~~~~ 124 (330)
T 3hym_B 51 KDPFHASCLPVHIGTLV---ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT---TLEKTY 124 (330)
T ss_dssp HCTTCTTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH---TTCTTC
T ss_pred cCCCChhhHHHHHHHHH---HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HhCCcc
Confidence 44555555555666666 5788999999999999999999999999999999999 8999999999865 444433
Q ss_pred CCCCCCCchhhHhHHHHHhhhc-CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLH-SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
... ....+.++. .+ ......+-+...+...++ ....++.+|.+|..+|++
T Consensus 125 ~~~----------~~~l~~~~~~~~-----------------~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 125 GPA----------WIAYGHSFAVES-----------------EHDQAMAAYFTAAQLMKG--CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp THH----------HHHHHHHHHHHT-----------------CHHHHHHHHHHHHHHTTT--CSHHHHHHHHHHHHTTCH
T ss_pred HHH----------HHHHHHHHHHcc-----------------CHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHhhH
Confidence 311 000001100 00 000000111111222222 234566789999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++.+. |++..+...+ |..++.
T Consensus 176 ~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l------------~~~~~~ 205 (330)
T 3hym_B 176 KLAERFFSQALSIA--------------------------------------PEDPFVMHEV------------GVVAFQ 205 (330)
T ss_dssp HHHHHHHHHHHTTC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCChHHHHHH------------HHHHHH
Confidence 99999999988652 4443333332 999999
Q ss_pred cCCHHHHHHHHHHHHhccCC----CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 256 AGLYSEAIRHFSKIVDGRRG----APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~----~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.|+|++|+..|.+++...+. ...+....+++++|.++..+|++++|+..+++++.++|++..+++.+|.++..+|+
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 99999999999999997321 11144678999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
+++|+..|++++++
T Consensus 286 ~~~A~~~~~~al~~ 299 (330)
T 3hym_B 286 FENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999999766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=163.55 Aligned_cols=206 Identities=14% Similarity=-0.007 Sum_probs=176.6
Q ss_pred hhhh-HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 19 NRKI-VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 19 ~~~~-~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++.. +.-++..|..++ ..|++++|+..|++++.++|.+..++..+|.+++.+|++++|++.|++++. ..|.+
T Consensus 32 ~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~- 104 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYL---QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA---SDSRN- 104 (252)
T ss_dssp CHHHHHHHHHHHHHHHH---HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-
T ss_pred chHHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCcCc-
Confidence 4443 677888888887 689999999999999999999999999999999999999999999999662 22111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
...++.+|.+|+.+|++++
T Consensus 105 -------------------------------------------------------------~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 105 -------------------------------------------------------------ARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTTCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHhHHHH
Confidence 1357789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.. ..+|....+...+ |..++..|
T Consensus 124 A~~~~~~~~~~------------------------------------~~~~~~~~~~~~l------------a~~~~~~g 155 (252)
T 2ho1_A 124 AYQRLLEASQD------------------------------------TLYPERSRVFENL------------GLVSLQMK 155 (252)
T ss_dssp HHHHHHHHTTC------------------------------------TTCTTHHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHhC------------------------------------ccCcccHHHHHHH------------HHHHHHcC
Confidence 99999997741 0124333333332 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++..++.++..+|++++|+.
T Consensus 156 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRL-----NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp CHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999997 344788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++++
T Consensus 231 ~~~~~~~~ 238 (252)
T 2ho1_A 231 YGLQLKRL 238 (252)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999887
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=171.00 Aligned_cols=252 Identities=13% Similarity=0.048 Sum_probs=184.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|....-+...|..++ ..|++++|+..|.++++++|.+..++..+|.++..+|++++|+..|++++ ...|.+..
T Consensus 94 ~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 167 (368)
T 1fch_A 94 DPKHMEAWQYLGTTQA---ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL---RYTPAYAH 167 (368)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTSTTTGG
T ss_pred CCCCHHHHHHHHHHHH---HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCcHH
Confidence 4444555566666665 57999999999999999999999999999999999999999999999966 34443332
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc-cccchHHH---HHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK-CFSVSDLK---KKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~~~---k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
........ . ....+. .....+. ++...+.. .-+...+..+++....+.++.+|.+|+..|+
T Consensus 168 ~~~~~~~~------~-~~~~~~--------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 168 LVTPAEEG------A-GGAGLG--------PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp GCC------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH------h-hhhccc--------HHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 21100000 0 000000 0000000 00000111 1111122333332245678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++.+. |+...+...+ |..++
T Consensus 233 ~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l------------~~~~~ 262 (368)
T 1fch_A 233 YDKAVDCFTAALSVR--------------------------------------PNDYLLWNKL------------GATLA 262 (368)
T ss_dssp HHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHhC--------------------------------------cCCHHHHHHH------------HHHHH
Confidence 999999999999772 4443333333 99999
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----------HHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-----------IQALDTRA 323 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-----------~~A~~~ra 323 (580)
..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++ ..+|..+|
T Consensus 263 ~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 999999999999999997 34578999999999999999999999999999999988 89999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|++++|...++++++..
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~~ 360 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLSTL 360 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHHH
T ss_pred HHHHHhCChHhHHHhHHHHHHHH
Confidence 99999999999999999988774
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=190.08 Aligned_cols=200 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred hHHHHHHHHHHHHHhhChhhH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEI-ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~-~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
...-++..|..++ ..|++ ++|+..|+++|+++|.++.+|..+|.+|+.+|+|++|+++|++++ ++.|+
T Consensus 101 ~a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~----- 169 (474)
T 4abn_A 101 EAQALMLKGKALN---VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL---THCKN----- 169 (474)
T ss_dssp CHHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCCC-----
T ss_pred hHHHHHHHHHHHH---hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC-----
Confidence 3444555555554 57999 999999999999999999999999999999999999999999966 22111
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc--------
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-------- 172 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-------- 172 (580)
...|+.+|.+|..+
T Consensus 170 ----------------------------------------------------------~~~~~~lg~~~~~~~~~~~~~~ 191 (474)
T 4abn_A 170 ----------------------------------------------------------KVSLQNLSMVLRQLQTDSGDEH 191 (474)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHTTCCCSCHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHhccCChhhh
Confidence 14678899999999
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
|++++|+..|++++++. |++..+...+ |.
T Consensus 192 ~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------g~ 221 (474)
T 4abn_A 192 SRHVMDSVRQAKLAVQMD--------------------------------------VLDGRSWYIL------------GN 221 (474)
T ss_dssp HHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HH
T ss_pred hhhHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HH
Confidence 99999999999999873 5555444443 88
Q ss_pred HHHHc--------CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 252 AALDA--------GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~~--------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.++.. |+|++|+..|.+++.+. |. .+.++.+|+++|.+|..+|++++|+..|.++++++|++..++..++
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~ 299 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 88888 99999999999999972 21 1168999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~a 342 (580)
.++..+|++++|+..+.++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 9999999999999877654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-17 Score=155.55 Aligned_cols=206 Identities=12% Similarity=0.076 Sum_probs=175.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++..+.-++..|..++ ..|++.+|+..|.+++.++|.+..++..+|.+++.+|++++|++.|++++. ..|.
T Consensus 4 ~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~--- 74 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYM---RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS---IKPD--- 74 (225)
T ss_dssp CCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTT---
T ss_pred CcccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCC---
Confidence 4556677788888887 689999999999999999999999999999999999999999999999662 2111
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-CCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-GLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G~~ee 177 (580)
..+.++.+|.+++.. |++++
T Consensus 75 -----------------------------------------------------------~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 75 -----------------------------------------------------------SAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHTTTCCHHH
T ss_pred -----------------------------------------------------------ChHHHHHHHHHHHHhcCcHHH
Confidence 013577899999999 99999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.. + .+|....+... . |..++..|
T Consensus 96 A~~~~~~~~~~-~-----------------------------------~~~~~~~~~~~--l----------~~~~~~~~ 127 (225)
T 2vq2_A 96 SMAYFDKALAD-P-----------------------------------TYPTPYIANLN--K----------GICSAKQG 127 (225)
T ss_dssp HHHHHHHHHTS-T-----------------------------------TCSCHHHHHHH--H----------HHHHHHTT
T ss_pred HHHHHHHHHcC-c-----------------------------------CCcchHHHHHH--H----------HHHHHHcC
Confidence 99999998751 0 12333333322 2 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHhcCChhHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-SCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
++++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+++++.++| ++..++..++.++...|++++|.
T Consensus 128 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp CHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999997 344788999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 337 HDLEHLKLL 345 (580)
Q Consensus 337 ~~~~~al~l 345 (580)
..++.++++
T Consensus 203 ~~~~~~~~~ 211 (225)
T 2vq2_A 203 EYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998776
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-17 Score=163.97 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=118.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....++.+|.++...|++++|+..|++++++. |+...+...+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~l 212 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--------------------------------------PDDAQLWNKL 212 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH
Confidence 34667889999999999999999999998762 4433333332
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--- 314 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--- 314 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+
T Consensus 213 ------------~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 213 ------------GATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275 (327)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC
T ss_pred ------------HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc
Confidence 99999999999999999999997 3447889999999999999999999999999999999
Q ss_pred ---------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 315 ---------CIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 315 ---------~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+..++..+|.++..+|++++|...|+++++..+
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999988753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-17 Score=161.40 Aligned_cols=188 Identities=11% Similarity=0.124 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
+.++..|..++ ..|++.+|+..|++++.++| .+..++..+|.+++.+|+|++|+..|++++ +..|.
T Consensus 8 ~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~------- 74 (228)
T 4i17_A 8 NQLKNEGNDAL---NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYN------- 74 (228)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCS-------
T ss_pred HHHHHHHHHHH---HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcc-------
Confidence 66788888888 68999999999999999999 899999999999999999999999999966 22221
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
....|+.+|.+|..+|++++|+..|
T Consensus 75 -------------------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 75 -------------------------------------------------------LANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHcccHHHHHHHH
Confidence 1246888999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEA 262 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eA 262 (580)
++++++. |++......+ ...+...|..++..|+|++|
T Consensus 100 ~~al~~~--------------------------------------p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 100 TEGIKAV--------------------------------------PGNATIEKLY-----AIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp HHHHHHS--------------------------------------TTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHC--------------------------------------CCcHHHHHHH-----HHHHHHHhHHHHHhccHHHH
Confidence 9999873 4444331111 12233449999999999999
Q ss_pred HHHHHHHHhccCCCCCcc--cHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHhcCC
Q 008039 263 IRHFSKIVDGRRGAPQGF--LAECYMHRAFAYRSSGRI---------------------------AESIADCNKTLALEP 313 (580)
Q Consensus 263 i~~y~~AL~~~~~~~~~~--~a~~~~nra~a~~~lg~~---------------------------~eAl~~~~~Al~ldP 313 (580)
+..|.+++++ .|. ...+++++|.+|..+|+. ++|+.+++++++++|
T Consensus 137 ~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 137 EENYKHATDV-----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhc-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999997 566 789999999999998887 777777777777777
Q ss_pred CcHHHHHHHHHHHH
Q 008039 314 SCIQALDTRALLLE 327 (580)
Q Consensus 314 ~~~~A~~~ra~~~~ 327 (580)
++..++..++.+..
T Consensus 212 ~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 212 NRTEIKQMQDQVKA 225 (228)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=181.75 Aligned_cols=205 Identities=10% Similarity=0.029 Sum_probs=175.0
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
..+|....-|...+..+. ..|+ +.+|+..|+++|+++|.+..+|.++|.+|..+|+|++|+.+|+++| +++|+
T Consensus 125 ~l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal---~ldP~ 198 (382)
T 2h6f_A 125 ELNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL---NQDAK 198 (382)
T ss_dssp HHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTT
T ss_pred HhCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCcc
Confidence 356677777777887776 5785 9999999999999999999999999999999999999999999966 33332
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
+ ..+|+.+|.++..+|++
T Consensus 199 ~--------------------------------------------------------------~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 199 N--------------------------------------------------------------YHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp C--------------------------------------------------------------HHHHHHHHHHHHHHTCC
T ss_pred C--------------------------------------------------------------HHHHHHHHHHHHHcCCh
Confidence 2 24688999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+.+|+++++++ |++..+...+ |.++..
T Consensus 217 ~eAl~~~~~al~l~--------------------------------------P~~~~a~~~l------------g~~l~~ 246 (382)
T 2h6f_A 217 DNELQYVDQLLKED--------------------------------------VRNNSVWNQR------------YFVISN 246 (382)
T ss_dssp TTHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999883 5555555444 899999
Q ss_pred -cCCHHHH-----HHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 256 -AGLYSEA-----IRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG--RIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 256 -~g~y~eA-----i~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg--~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
.|.+++| +.+|.++|.+ .|.+..+|+++|.++..+| ++++|+..|.++ .++|++..++..+|.+|.
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHH
Confidence 5665888 5999999998 4558899999999999988 699999999998 999999999999999999
Q ss_pred hcC---------ChhHHHHHHHHH-HHH
Q 008039 328 TIR---------CLPDCLHDLEHL-KLL 345 (580)
Q Consensus 328 ~lg---------~~~eAi~~~~~a-l~l 345 (580)
.+| .+++|+..|+++ +++
T Consensus 321 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 321 DMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 985 358999999998 666
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-16 Score=159.82 Aligned_cols=241 Identities=11% Similarity=-0.005 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....++..|..++ ..|++.+|+..|++++..+|.+..++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 20 ~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~----- 88 (327)
T 3cv0_A 20 YHENPMEEGLSML---KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKD----- 88 (327)
T ss_dssp GSSCHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred hhHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCcCC-----
Confidence 4556788898888 689999999999999999999999999999999999999999999999662 22211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.++...|++++|+..
T Consensus 89 ---------------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 89 ---------------------------------------------------------IAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 13577899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC---CCCCCCC-CC-CCCCCCChHHHHHHHHHHHH-----HHHHHHHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVS---NNHQTPP-AT-PPRTMTESESVSQLLSHIKL-----LLRRRTAAI 251 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~---~~~~~~~-~~-~~~~dPd~~~~~~ll~~~k~-----~~~~k~~G~ 251 (580)
|++++.+.+... ... ..+... ....... .. .....-+...+...+..+.. .......|.
T Consensus 112 ~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 112 LRAWLLSQPQYE---------QLG--SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp HHHHHHTSTTTT---------TC----------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHhCCccH---------HHH--HHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 999997743210 000 000000 0000000 00 00000112223333322221 223455699
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 252 AALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 252 ~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
.++..|++++|+..|.+++.. .|....++.++|.++..+|++++|+..+.+++.++|++..+++.+|.++..+|+
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999997 344788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLLY 346 (580)
Q Consensus 332 ~~eAi~~~~~al~l~ 346 (580)
+++|+..|++++++.
T Consensus 256 ~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999884
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-17 Score=176.59 Aligned_cols=250 Identities=14% Similarity=0.079 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
+.++.++..|..++ ..|++.+|+..|++++.++| ++.++..+|.+++.+|+|++|+..|++++ +..|++
T Consensus 4 ~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~---- 72 (514)
T 2gw1_A 4 KYALALKDKGNQFF---RNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPDY---- 72 (514)
T ss_dssp HHHHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSCC----
T ss_pred hhHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChHH----
Confidence 46778899999988 68999999999999999999 58999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
...|+.+|.+|+.+|++++|+.
T Consensus 73 ----------------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 73 ----------------------------------------------------------SKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHHhhHHHHHH
Confidence 1367889999999999999999
Q ss_pred HHHHHHHHHHHhhhh-----------hhcccCCCCC-------------C-------CC---C----------CCCCCCC
Q 008039 181 LLQTGKRLATAAFRR-----------ESISLSDDSF-------------P-------FS---K----------FPVSNNH 216 (580)
Q Consensus 181 ~l~~al~l~~~~~r~-----------~~~~~~~d~~-------------~-------~~---~----------l~~~~~~ 216 (580)
.|++++.+.+..... .........+ . .. . ++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 999998764310000 0000000000 0 00 0 0000000
Q ss_pred CCC--CCCCC---------------CCCCChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHcCCHH
Q 008039 217 QTP--PATPP---------------RTMTESESVSQLLSHIKL-------------------LLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 217 ~~~--~~~~~---------------~~dPd~~~~~~ll~~~k~-------------------~~~~k~~G~~~~~~g~y~ 260 (580)
... ...+. ....+...+...+..+.. ...+...|..++..|+|+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 000 00000 001122333333333222 233456689999999999
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 008039 261 EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLE 340 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~ 340 (580)
+|+..|.+++.. .|. ..+++++|.++..+|++++|+..+.+++.++|++..+++.+|.++..+|++++|+..|+
T Consensus 255 ~A~~~~~~~l~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 255 GAHEDIKKAIEL-----FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp HHHHHHHHHHHH-----CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhh-----Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999997 334 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 008039 341 HLKLL 345 (580)
Q Consensus 341 ~al~l 345 (580)
+++++
T Consensus 329 ~~~~~ 333 (514)
T 2gw1_A 329 KAKEL 333 (514)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-17 Score=163.80 Aligned_cols=184 Identities=14% Similarity=0.051 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 39 HSEIASALSLLDAALAL--SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l--~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
.|++++|+..|++++.. +|+++.++..+|.+++..|++++|++.|++ |
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~---------------------- 127 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------G---------------------- 127 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------C----------------------
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------C----------------------
Confidence 45666777777766654 466777777777777777777777765554 0
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
.....++.+|.+|..+|++++|+..|++++++.
T Consensus 128 ----------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------- 160 (291)
T 3mkr_A 128 ----------------------------------------DSLECMAMTVQILLKLDRLDLARKELKKMQDQD------- 160 (291)
T ss_dssp ----------------------------------------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred ----------------------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------
Confidence 112357789999999999999999999998773
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
|++......... .+.+...|++++|+..|+++++.
T Consensus 161 -------------------------------p~~~~~~l~~a~----------~~l~~~~~~~~eA~~~~~~~l~~---- 195 (291)
T 3mkr_A 161 -------------------------------EDATLTQLATAW----------VSLAAGGEKLQDAYYIFQEMADK---- 195 (291)
T ss_dssp -------------------------------TTCHHHHHHHHH----------HHHHHCTTHHHHHHHHHHHHHHH----
T ss_pred -------------------------------cCcHHHHHHHHH----------HHHHhCchHHHHHHHHHHHHHHh----
Confidence 443211111100 23344569999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
.|.++.+++++|.++..+|++++|+..+.++|.++|+++.+++++|.++..+|+++++ ...+++++++
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3458899999999999999999999999999999999999999999999999999875 6788999888
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=163.09 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=168.8
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL---ELALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~---~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
++...+.++..|..++ ..|++.+|+..|++++..+|.+ +.++..+|.+++.+|+|++|+..|++++ ...|+
T Consensus 11 ~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l---~~~p~ 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFY---NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI---QIYQI 84 (261)
T ss_dssp CCSSHHHHHHHHHHHH---HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT
T ss_pred CCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH---HHCCC
Confidence 4456778889999988 6899999999999999999999 9999999999999999999999999966 33332
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH---- 171 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~---- 171 (580)
++ ...++++.+|.+++.
T Consensus 85 ~~-----------------------------------------------------------~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 85 DP-----------------------------------------------------------RVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp CT-----------------------------------------------------------THHHHHHHHHHHHHHHCCC
T ss_pred Cc-----------------------------------------------------------hhHHHHHHHHHHHHHhccc
Confidence 21 112468889999999
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-----
Q 008039 172 ----LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL----- 242 (580)
Q Consensus 172 ----lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~----- 242 (580)
+|++++|+..|++++++. |++..+...+..+..
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~--------------------------------------p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRY--------------------------------------PNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHC--------------------------------------TTCTTHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHC--------------------------------------cCchhHHHHHHHHHHHHHHH
Confidence 999999999999999873 333333222222211
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcC
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----------GRIAESIADCNKTLALE 312 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----------g~~~eAl~~~~~Al~ld 312 (580)
.......|..++..|+|++|+..|++++.. .|. .+....+++++|.+|..+ |++++|+..|.+++..+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDA-YPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH-CCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 122356699999999999999999999996 343 445788999999999988 99999999999999999
Q ss_pred CCc---HHHHHHHHHHHHhcCChhHH
Q 008039 313 PSC---IQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 313 P~~---~~A~~~ra~~~~~lg~~~eA 335 (580)
|++ ..++..++.++..+++++++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 998 46677777777777666554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=178.00 Aligned_cols=185 Identities=14% Similarity=0.116 Sum_probs=164.2
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCh-HHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYLRRF-KDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~-~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
+++..++..++.++...|.++.++..+|.+++.+|+| ++|++.|++++ ++.|++
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al---~~~p~~---------------------- 136 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV---KLEPEL---------------------- 136 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH---HHCTTC----------------------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH---hhCCCC----------------------
Confidence 4588999999999999999999999999999999999 99999999966 332221
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+.|+.+|.+|+.+|++++|+..|++++++
T Consensus 137 ----------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---------- 166 (474)
T 4abn_A 137 ----------------------------------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH---------- 166 (474)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Confidence 246888999999999999999999999876
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA---------GLYSEAIRHFSKI 269 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~---------g~y~eAi~~y~~A 269 (580)
+|+ .. .+... |..++.. |+|++|+..|.++
T Consensus 167 ----------------------------~p~-~~--~~~~l----------g~~~~~~~~~~~~~~~g~~~~A~~~~~~a 205 (474)
T 4abn_A 167 ----------------------------CKN-KV--SLQNL----------SMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205 (474)
T ss_dssp ----------------------------CCC-HH--HHHHH----------HHHHTTCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CCC-HH--HHHHH----------HHHHHHhccCChhhhhhhHHHHHHHHHHH
Confidence 255 22 23333 8899998 9999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcCChhHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSS--------GRIAESIADCNKTLALEP---SCIQALDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~l--------g~~~eAl~~~~~Al~ldP---~~~~A~~~ra~~~~~lg~~~eAi~~ 338 (580)
+++ .|.+..+|+++|.+|..+ |++++|+..|+++++++| +++.+|+.+|.+|..+|++++|+..
T Consensus 206 l~~-----~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 280 (474)
T 4abn_A 206 VQM-----DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG 280 (474)
T ss_dssp HHH-----CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHh-----CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 997 455789999999999999 999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 339 LEHLKLL 345 (580)
Q Consensus 339 ~~~al~l 345 (580)
|++++++
T Consensus 281 ~~~al~l 287 (474)
T 4abn_A 281 FSQAAAL 287 (474)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999988
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=169.35 Aligned_cols=245 Identities=15% Similarity=0.049 Sum_probs=177.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
+|....-+...|..++ ..|++.+|+..|++++.++|.+..++..+|.++..+|+|++|+..|++++. ..|.+..
T Consensus 95 ~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~ 168 (365)
T 4eqf_A 95 DPGDAEAWQFLGITQA---ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK---QNPKYKY 168 (365)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCHHHHC
T ss_pred CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH---hCccchH
Confidence 3444555556666555 579999999999999999999999999999999999999999999999763 3332221
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHH---HHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLK---KKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
........ ..++. .....+....+.. +-+...+..+++......|+.+|.+|..+|++
T Consensus 169 ~~~~~~~~-------~~~~~------------~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~ 229 (365)
T 4eqf_A 169 LVKNKKGS-------PGLTR------------RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEF 229 (365)
T ss_dssp C--------------------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCH
T ss_pred HHhhhccc-------hHHHH------------HHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCH
Confidence 11000000 00000 0000001111111 11222233344422455788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++++. |++..+...+ |..++.
T Consensus 230 ~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------~~~~~~ 259 (365)
T 4eqf_A 230 NRAIDAFNAALTVR--------------------------------------PEDYSLWNRL------------GATLAN 259 (365)
T ss_dssp HHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHH
Confidence 99999999999873 4444433333 999999
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------------cHHHHHHHH
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------------CIQALDTRA 323 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------------~~~A~~~ra 323 (580)
.|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+ +..+|..++
T Consensus 260 ~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEI-----QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 99999999999999997 3457899999999999999999999999999999987 467899999
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al 343 (580)
.++..+|+++.+...+++.+
T Consensus 335 ~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHcCcHHHHHHHHHhhH
Confidence 99999999999887776653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-16 Score=176.56 Aligned_cols=221 Identities=15% Similarity=0.075 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++++|+..|++++.+ |.+..++..+|.++...|++++|+..|++++ +..|++..... .+ ...+
T Consensus 284 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~------~l----~~~~ 349 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKIL---EIDPYNLDVYP------LH----LASL 349 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCCTTHH------HH----HHHH
T ss_pred CcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HcCcccHHHHH------HH----HHHH
Confidence 568888888888888887 6778888888888888888888888888855 34444332211 00 0000
Q ss_pred -cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 118 -HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 118 -~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
..+ ...+....+...+... ......|+.+|.+|+..|++++|+..|++++++.
T Consensus 350 ~~~g-----------------~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 403 (597)
T 2xpi_A 350 HESG-----------------EKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD------- 403 (597)
T ss_dssp HHHT-----------------CHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHhC-----------------CHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 000 0000000000111111 2234567789999999999999999999998762
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~ 276 (580)
|+.......+ |..+.+.|++++|+..|.+++..
T Consensus 404 -------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~---- 436 (597)
T 2xpi_A 404 -------------------------------PQFGPAWIGF------------AHSFAIEGEHDQAISAYTTAARL---- 436 (597)
T ss_dssp -------------------------------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHT----
T ss_pred -------------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh----
Confidence 3333333332 89999999999999999999997
Q ss_pred CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 277 PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 277 ~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.+..+++++|.+|...|++++|+..|++++.++|+++.+|..+|.++...|++++|+..|++++++.
T Consensus 437 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 437 -FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp -TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 334678999999999999999999999999999999999999999999999999999999999998885
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=177.54 Aligned_cols=249 Identities=13% Similarity=0.096 Sum_probs=174.9
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
+....++..|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|++
T Consensus 23 ~~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~---- 92 (537)
T 3fp2_A 23 AYAVQLKNRGNHFF---TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPDH---- 92 (537)
T ss_dssp HHHHHHHHHHHHHH---HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTC----
T ss_pred HHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCch----
Confidence 35677889998888 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
...++.+|.++..+|++++|+.
T Consensus 93 ----------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 93 ----------------------------------------------------------SKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 2357889999999999999999
Q ss_pred HHHHHHHHHHHhhhhh-------------------hcccCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCC
Q 008039 181 LLQTGKRLATAAFRRE-------------------SISLSDDSFPFSKFPV------------SNNHQTPPATPPRTMTE 229 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~-------------------~~~~~~d~~~~~~l~~------------~~~~~~~~~~~~~~dPd 229 (580)
.|+ ++.+.+...... .+....+.. ...++. ..............++.
T Consensus 115 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (537)
T 3fp2_A 115 DLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG-SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192 (537)
T ss_dssp HHH-HHC-----------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSS
T ss_pred HHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-ccccchHhHHHHHHHhcChHHHHHHHhhccccccH
Confidence 995 655433210000 000000000 000000 00000000000011111
Q ss_pred hHHHHH-------------------------HHHHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 230 SESVSQ-------------------------LLSHI------------KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 230 ~~~~~~-------------------------ll~~~------------k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
...... .+..+ .....+...|..++..|++++|+..|.+++.+
T Consensus 193 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 111111 11110 01223456688999999999999999999997
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 273 RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 273 ~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|. ..+++++|.++...|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 273 -----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 273 -----HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp -----CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333 7889999999999999999999999999999999999999999999999999999999999887
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=156.04 Aligned_cols=171 Identities=11% Similarity=0.073 Sum_probs=144.8
Q ss_pred CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 008039 56 SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK 135 (580)
Q Consensus 56 ~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 135 (580)
.|.++.++..+|.+++..|+|++|+..|++++. ..|. .
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~------------------------~--------------- 40 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLK---LTNN------------------------Q--------------- 40 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTT------------------------C---------------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHh---ccCC------------------------C---------------
Confidence 356779999999999999999999999999662 2210 0
Q ss_pred cccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCC
Q 008039 136 CFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN 215 (580)
Q Consensus 136 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~ 215 (580)
..+.++.+|.+++.+|++++|+..|++++++.
T Consensus 41 ----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------------- 72 (228)
T 4i17_A 41 ----------------------DSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------------------------- 72 (228)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------
T ss_pred ----------------------CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--------------------------
Confidence 01356679999999999999999999999762
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-------HHHHHH
Q 008039 216 HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA-------ECYMHR 288 (580)
Q Consensus 216 ~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a-------~~~~nr 288 (580)
|+...+...+ |.+++..|+|++|+..|.+++.+ .| .+. .+|+++
T Consensus 73 ------------p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~-~p----~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 73 ------------YNLANAYIGK------------SAAYRDMKNNQEYIATLTEGIKA-VP----GNATIEKLYAIYYLKE 123 (228)
T ss_dssp ------------CSHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-ST----TCHHHHHHHHHHHHHH
T ss_pred ------------cchHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHH-CC----CcHHHHHHHHHHHHHH
Confidence 5544444333 99999999999999999999997 23 344 679999
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCCh---------------------------hHHHHHH
Q 008039 289 AFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLETIRCL---------------------------PDCLHDL 339 (580)
Q Consensus 289 a~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~~lg~~---------------------------~eAi~~~ 339 (580)
|.++..+|++++|+..|.++++++|+ ++.+++.+|.++..+|+. ++|+..|
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYL 203 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999998 8888888
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
++++++
T Consensus 204 ~~a~~l 209 (228)
T 4i17_A 204 GEAVTL 209 (228)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 888877
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-16 Score=172.49 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
+...+..+. ..|++.+|+..|++++..+|.+..++..+|.+|...|++++|++.|++++ +..|.+....
T Consensus 342 ~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~----- 410 (597)
T 2xpi_A 342 YPLHLASLH---ESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS---TMDPQFGPAW----- 410 (597)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHH-----
T ss_pred HHHHHHHHH---HhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCCCHHHH-----
Confidence 444444444 46677777777777777777777777777777777777777777777754 2333222000
Q ss_pred hhHhHHHHHhhhc-CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLH-SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 106 ~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
...+..+. .+ ...+..+-+-..+...+ .....|+.+|.+|...|++++|+..|++
T Consensus 411 -----~~l~~~~~~~g-----------------~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 411 -----IGFAHSFAIEG-----------------EHDQAISAYTTAARLFQ--GTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp -----HHHHHHHHHHT-----------------CHHHHHHHHHHHHHTTT--TCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHcC-----------------CHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00000000 00 00000000001111111 1234577899999999999999999999
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
++++. |++..+...+ |..+++.|++++|+.
T Consensus 467 ~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 467 SYALF--------------------------------------QYDPLLLNEL------------GVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHHHC--------------------------------------CCCHHHHHHH------------HHHHHHTTCHHHHHH
T ss_pred HHHhC--------------------------------------CCChHHHHHH------------HHHHHHhCCHHHHHH
Confidence 98762 3333333222 999999999999999
Q ss_pred HHHHHHhccCC-CCCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRG-APQGFL-AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~-~~~~~~-a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.|.++++..+. ...|.. ..+|.++|.++...|++++|+..++++++++|+++.+|+.+|.+|...|++++|+..|+++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999986310 112333 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+++
T Consensus 577 l~~ 579 (597)
T 2xpi_A 577 LAI 579 (597)
T ss_dssp HHH
T ss_pred Hhc
Confidence 988
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=173.48 Aligned_cols=237 Identities=14% Similarity=0.103 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
..-+...+..++ ..|++.+|+..|.+++.++|. ..++..+|.+++.+|++++|+..|++++ ...|.+...
T Consensus 243 ~~~~~~~g~~~~---~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~--- 312 (537)
T 3fp2_A 243 ALALCYTGIFHF---LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV---DLNPEYPPT--- 312 (537)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHH---HHCTTCHHH---
T ss_pred HHHHHHHHHHHH---hcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHh---ccCCCCHHH---
Confidence 444666666665 578888888888888888888 7888888888888888888888888855 333332210
Q ss_pred CchhhHhHHHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 103 DSSSQQLSRERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
......++ ..+ ......+-+...+..+++ ....|+.+|.+++.+|++++|+..
T Consensus 313 -------~~~l~~~~~~~~-----------------~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 313 -------YYHRGQMYFILQ-----------------DYKNAKEDFQKAQSLNPE--NVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp -------HHHHHHHHHHTT-----------------CHHHHHHHHHHHHHHCTT--CSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHHHHHHHhcC-----------------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00011111 111 000011111111222222 235678899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.+. |++..+...+ |..++..|+|++
T Consensus 367 ~~~~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~ 396 (537)
T 3fp2_A 367 FNETKLKF--------------------------------------PTLPEVPTFF------------AEILTDRGDFDT 396 (537)
T ss_dssp HHHHHHHC--------------------------------------TTCTHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHHhC--------------------------------------CCChHHHHHH------------HHHHHHhCCHHH
Confidence 99998762 3444443333 999999999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Q 008039 262 AIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSS----------GRIAESIADCNKTLALEPSCIQALDTRALLLETIR 330 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~l----------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg 330 (580)
|+..|.+++.+.+... .......++++|.++..+ |++++|+..|++++.++|++..+++.+|.++..+|
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999732111 122345578899999999 99999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
++++|+..|++++++
T Consensus 477 ~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 477 KIDEAIELFEDSAIL 491 (537)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999999988
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5e-16 Score=155.25 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=182.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
-..++..+.-+...+..++ ..|++++|+..|.+++.+ .|....++..+|.++..+|++++|+..|++++
T Consensus 20 ~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYA---SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456778888888898887 689999999999999995 78888999999999999999999999999977
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
...+.. +.++ .....+.++.+|.
T Consensus 97 ~~~~~~-----------------------~~~~----------------------------------~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 97 AIREKT-----------------------LGKD----------------------------------HPAVAATLNNLAV 119 (311)
T ss_dssp HHHHHH-----------------------HCTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------hCCC----------------------------------ChHHHHHHHHHHH
Confidence 332110 0000 0112346788999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
+|+.+|++++|+..|++++.+....+. .........+...
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~~~~~l-------- 159 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLG--------------------------------KDHPDVAKQLNNL-------- 159 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHH--------
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcC--------------------------------CCChHHHHHHHHH--------
Confidence 999999999999999999987422100 0011222333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL------------- 311 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l------------- 311 (580)
|..++..|+|++|+..|.+++.+.. +...+....+++++|.++..+|++++|+..+.+++.+
T Consensus 160 --a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 160 --ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp --HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 9999999999999999999998621 1224567889999999999999999999999999974
Q ss_pred ------------------------------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 312 ------------------------------------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 312 ------------------------------------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+|....+++.+|.+|..+|++++|+..|++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 57778999999999999999999999999998883
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-17 Score=185.84 Aligned_cols=176 Identities=15% Similarity=0.127 Sum_probs=153.3
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++|+..+-|...|..+. ..|++++|+..|++||+++|+++.+|.++|.+|..+|++++|++.|+++| +++|++.
T Consensus 4 s~P~~a~al~nLG~~~~---~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~ 77 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKR---EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFA 77 (723)
T ss_dssp --CHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCH
T ss_pred CCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH
Confidence 35777888888898887 78999999999999999999999999999999999999999999999966 3333222
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
..|++||.+|..+|++++
T Consensus 78 --------------------------------------------------------------~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 78 --------------------------------------------------------------DAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------------------------------HHHHHHHHHHHHcCCHHH
Confidence 368899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|+++++++ |++..+...+ |.++...|
T Consensus 96 A~~~~~kAl~l~--------------------------------------P~~~~a~~~L------------g~~~~~~g 125 (723)
T 4gyw_A 96 ALQCYTRAIQIN--------------------------------------PAFADAHSNL------------ASIHKDSG 125 (723)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHcC
Confidence 999999999883 5555554443 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+|++|+..|+++|++ .|.+..+++|+|.++..+|+|++|++.+.+++++.|+..
T Consensus 126 ~~~eAi~~~~~Al~l-----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 126 NIPEAIASYRTALKL-----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp CHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 999999999999998 455899999999999999999999999999999876543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-17 Score=158.76 Aligned_cols=203 Identities=15% Similarity=0.041 Sum_probs=165.3
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL----ELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~----~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+|....-++..+..++ ..|++.+|+..|++++. .|.+ ..++..+|.++..+|++++|+..|++++ +..|
T Consensus 33 ~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~---~~~~ 105 (272)
T 3u4t_A 33 KYNSPYIYNRRAVCYY---ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV---DRDT 105 (272)
T ss_dssp TCCCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHST
T ss_pred CCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHH---hcCc
Confidence 4444444556666665 57999999999999999 4443 3458999999999999999999999966 2322
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL 174 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~ 174 (580)
.+ .+.|+.+|.+|+.+|+
T Consensus 106 ~~--------------------------------------------------------------~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 106 TR--------------------------------------------------------------LDMYGQIGSYFYNKGN 123 (272)
T ss_dssp TC--------------------------------------------------------------THHHHHHHHHHHHTTC
T ss_pred cc--------------------------------------------------------------HHHHHHHHHHHHHccC
Confidence 21 1357889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 175 MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 175 ~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
+++|+..|++++++ +|+...+...+ |..++
T Consensus 124 ~~~A~~~~~~al~~--------------------------------------~~~~~~~~~~l------------~~~~~ 153 (272)
T 3u4t_A 124 FPLAIQYMEKQIRP--------------------------------------TTTDPKVFYEL------------GQAYY 153 (272)
T ss_dssp HHHHHHHHGGGCCS--------------------------------------SCCCHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHhhc--------------------------------------CCCcHHHHHHH------------HHHHH
Confidence 99999999988754 24444443333 85666
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CC-----cHHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR---IAESIADCNKTLALE---PS-----CIQALDTRA 323 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~---~~eAl~~~~~Al~ld---P~-----~~~A~~~ra 323 (580)
..++|++|+..|.+++++ .|.+..+++++|.++..+|+ +++|+..+.+++.+. |+ ...++..+|
T Consensus 154 ~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 228 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA 228 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 778999999999999997 34468999999999999999 999999999999986 55 357999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++..+|++++|+..|++++++
T Consensus 229 ~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 229 YYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-16 Score=154.44 Aligned_cols=182 Identities=9% Similarity=-0.006 Sum_probs=147.4
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
...++|.++..++.+|.+++..|+|++|+..|++++ ...|+++
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---~~~p~~~---------------------------------- 49 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVF---TYGRTHE---------------------------------- 49 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHG---GGCSCST----------------------------------
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCc----------------------------------
Confidence 456789999999999999999999999999999966 3333221
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
.....++.+|.+|+.+|++++|+..|++++++.
T Consensus 50 -------------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~---------------------- 82 (261)
T 3qky_A 50 -------------------------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY---------------------- 82 (261)
T ss_dssp -------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred -------------------------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC----------------------
Confidence 001357889999999999999999999999873
Q ss_pred CCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhccCCCCCcccH
Q 008039 212 VSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALD--------AGLYSEAIRHFSKIVDGRRGAPQGFLA 282 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~--------~g~y~eAi~~y~~AL~~~~~~~~~~~a 282 (580)
|++ .....++.. |.+++. .|+|++|+..|.+++.. .|. .+...
T Consensus 83 ----------------p~~~~~~~a~~~l----------g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~-~~~~~ 134 (261)
T 3qky_A 83 ----------------QIDPRVPQAEYER----------AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPN-HELVD 134 (261)
T ss_dssp ----------------TTCTTHHHHHHHH----------HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTT-CTTHH
T ss_pred ----------------CCCchhHHHHHHH----------HHHHHHhcccccccchhHHHHHHHHHHHHHH-CcC-chhHH
Confidence 222 122333333 999999 99999999999999997 343 23334
Q ss_pred HHH--------------HHHHHHHHHcCChHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHhc----------CChhHH
Q 008039 283 ECY--------------MHRAFAYRSSGRIAESIADCNKTLALEPS---CIQALDTRALLLETI----------RCLPDC 335 (580)
Q Consensus 283 ~~~--------------~nra~a~~~lg~~~eAl~~~~~Al~ldP~---~~~A~~~ra~~~~~l----------g~~~eA 335 (580)
.++ +++|.+|..+|++++|+..|++++..+|+ ...+++.+|.+|..+ |++++|
T Consensus 135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 444 89999999999999999999999999998 678999999999988 999999
Q ss_pred HHHHHHHHHH
Q 008039 336 LHDLEHLKLL 345 (580)
Q Consensus 336 i~~~~~al~l 345 (580)
+..|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (261)
T 3qky_A 215 VELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999888
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-16 Score=170.35 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=182.1
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++....-+...|..++ ..|++.+|+..|++++.++|. ..++..+|.++..+|++++|+..|++++ ...|.+..
T Consensus 233 ~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~ 305 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKF---LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL---KLDSNNSS 305 (514)
T ss_dssp HHHHHHHHHHHHHHHH---HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH---TTCTTCTH
T ss_pred ChHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh---hcCcCCHH
Confidence 4667777888888887 689999999999999999999 9999999999999999999999999965 44443321
Q ss_pred CCCCCchhhHhHHHHHhhh-cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLL-HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
. ....+.++ ..++ .+ ...+-+...+..++. ....++.+|.+++..|++++
T Consensus 306 ~----------~~~l~~~~~~~~~--------~~---------~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 356 (514)
T 2gw1_A 306 V----------YYHRGQMNFILQN--------YD---------QAGKDFDKAKELDPE--NIFPYIQLACLAYRENKFDD 356 (514)
T ss_dssp H----------HHHHHHHHHHTTC--------TT---------HHHHHHHHHHHTCSS--CSHHHHHHHHHTTTTTCHHH
T ss_pred H----------HHHHHHHHHHhCC--------HH---------HHHHHHHHHHHhChh--hHHHHHHHHHHHHHcCCHHH
Confidence 1 00111111 1110 00 111111112222222 34567788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.+. |+...+...+ |..++..|
T Consensus 357 A~~~~~~~~~~~--------------------------------------~~~~~~~~~l------------a~~~~~~~ 386 (514)
T 2gw1_A 357 CETLFSEAKRKF--------------------------------------PEAPEVPNFF------------AEILTDKN 386 (514)
T ss_dssp HHHHHHHHHHHS--------------------------------------TTCSHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHHc--------------------------------------ccCHHHHHHH------------HHHHHHCC
Confidence 999999988762 3333333222 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCC--cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRS---SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~---lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
+|++|+..|.+++... |... .....+++++|.++.. +|++++|+..|.+++.++|++..+++.+|.++..+|++
T Consensus 387 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 465 (514)
T 2gw1_A 387 DFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465 (514)
T ss_dssp CHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence 9999999999999973 3211 1124589999999999 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|++++++
T Consensus 466 ~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 466 DEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999988
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.6e-16 Score=148.73 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=156.2
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++....-+...+..++ ..|++.+|+..|.+++.++|.+..++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 52 ~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~- 124 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLS---SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR---AGMEN- 124 (243)
T ss_dssp TCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTCCS-
T ss_pred hCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCC-
Confidence 35555666777777776 689999999999999999999999999999999999999999999999652 22111
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
...++.+|.+++.+|++++
T Consensus 125 -------------------------------------------------------------~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 125 -------------------------------------------------------------GDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHTSCHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHhccHHH
Confidence 1357789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++.+. |+...+...+ |..++..|
T Consensus 144 A~~~~~~~~~~~--------------------------------------~~~~~~~~~l------------~~~~~~~~ 173 (243)
T 2q7f_A 144 ALPYLQRAVELN--------------------------------------ENDTEARFQF------------GMCLANEG 173 (243)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHHT
T ss_pred HHHHHHHHHHhC--------------------------------------CccHHHHHHH------------HHHHHHcC
Confidence 999999998762 3333333222 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++..++.+....+.
T Consensus 174 ~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~ 242 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQ-----DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242 (243)
T ss_dssp CCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence 999999999999997 344788999999999999999999999999999999999999998887665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-16 Score=151.95 Aligned_cols=202 Identities=10% Similarity=-0.103 Sum_probs=164.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
++....-+...|..++ ..|++.+|+..|++++.++|.++.++..+|.+++.+|+|++|+..|++++ ...|.+
T Consensus 39 ~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~-- 110 (275)
T 1xnf_A 39 DDERAQLLYERGVLYD---SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTY-- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC--
T ss_pred CchhHHHHHHHHHHHH---HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCccc--
Confidence 3456666777777777 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
...|+.+|.+|+.+|++++|
T Consensus 111 ------------------------------------------------------------~~~~~~la~~~~~~g~~~~A 130 (275)
T 1xnf_A 111 ------------------------------------------------------------NYAHLNRGIALYYGGRDKLA 130 (275)
T ss_dssp ------------------------------------------------------------THHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------------------------------------------cHHHHHHHHHHHHhccHHHH
Confidence 13678899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGL 258 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~ 258 (580)
+..|++++++. |+....... ...++..|+
T Consensus 131 ~~~~~~a~~~~--------------------------------------~~~~~~~~~-------------~~~~~~~~~ 159 (275)
T 1xnf_A 131 QDDLLAFYQDD--------------------------------------PNDPFRSLW-------------LYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHHC--------------------------------------TTCHHHHHH-------------HHHHHHHHC
T ss_pred HHHHHHHHHhC--------------------------------------CCChHHHHH-------------HHHHHHhcC
Confidence 99999999873 333332222 233466799
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcCChhH
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLLETIRCLPD 334 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~~~lg~~~e 334 (580)
+++|+..|.+++... |. ... ..+++.++...+++++|+..+.+++..+|.. ..+++.+|.++..+|++++
T Consensus 160 ~~~A~~~~~~~~~~~-~~----~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DK----EQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp HHHHHHHHHHHHHHS-CC----CST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcC-Cc----chH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 999999999999963 32 222 3457888889999999999999999988754 7999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..|++++++
T Consensus 234 A~~~~~~al~~ 244 (275)
T 1xnf_A 234 ATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 99999999766
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=160.38 Aligned_cols=218 Identities=11% Similarity=0.059 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPR------LELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~------~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+....++..+-.++ ...|++++|+..|.+|+++.+. .+.++.++|.+|..+|+|++|+.+|++++......+
T Consensus 34 ~~A~~~~~~a~~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 111 (292)
T 1qqe_A 34 EEAADLCVQAATIY--RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111 (292)
T ss_dssp HHHHHHHHHHHHHH--HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 33444555554443 2579999999999999998542 367899999999999999999999999773211100
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-C
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-G 173 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G 173 (580)
+. ......|..+|.+|... |
T Consensus 112 -~~----------------------------------------------------------~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 112 -QF----------------------------------------------------------RRGANFKFELGEILENDLH 132 (292)
T ss_dssp -CH----------------------------------------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred -CH----------------------------------------------------------HHHHHHHHHHHHHHHHhhc
Confidence 00 00123578899999995 9
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHH
Q 008039 174 LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 174 ~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~ 252 (580)
++++|+.+|++++++.+.. .+... ...+... |..
T Consensus 133 ~~~~A~~~~~~Al~~~~~~-----------------------------------~~~~~~~~~~~~l----------g~~ 167 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQD-----------------------------------QSVALSNKCFIKC----------ADL 167 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHH----------HHH
T ss_pred CHHHHHHHHHHHHHHHHhC-----------------------------------CChHHHHHHHHHH----------HHH
Confidence 9999999999999986420 11111 1222223 999
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCCCCc---ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH-----HHHHHH
Q 008039 253 ALDAGLYSEAIRHFSKIVDGRRGAPQG---FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA-----LDTRAL 324 (580)
Q Consensus 253 ~~~~g~y~eAi~~y~~AL~~~~~~~~~---~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A-----~~~ra~ 324 (580)
++..|+|++|+.+|.+++.+. |.... ....+|+++|.|+..+|++++|+..|++++.++|++..+ +..++.
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~ 246 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLID 246 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 999999999999999999973 32221 224578999999999999999999999999999998764 455666
Q ss_pred HHH--hcCChhHHHHHHHHHHHH
Q 008039 325 LLE--TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~--~lg~~~eAi~~~~~al~l 345 (580)
++. ..+++++|+..|++++.+
T Consensus 247 ~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 247 AVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHcCCHHHHHHHHHHhccCCcc
Confidence 665 567899999999888444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=145.93 Aligned_cols=108 Identities=19% Similarity=0.168 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--------CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA--------PQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~--------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
+.+.....++..|+.+++.|+|++|+..|+++|+++ |. ..|..+.+|+|+|.|+.++|+|++|+.+|++||
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445566777888999999999999999999999984 43 112345599999999999999999999999999
Q ss_pred hc-------CCCcHHHH----HHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 310 AL-------EPSCIQAL----DTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 310 ~l-------dP~~~~A~----~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++ +|++.++| +++|.++..+|+|++|+.+|++++++.
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99 99999999 999999999999999999999999995
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=151.56 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHccChHHHHHHHH
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALEL----------------KARSLLYLRRFKDVADMLQ 84 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~----------------rA~~l~~l~r~~eAi~~~~ 84 (580)
+.++.++..|..++ ..|++.+|+..|++++.++|.++.++.. +|.++..+|+|++|+..|+
T Consensus 2 ~~~~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 2 QSVDEMLQKVSAAI---EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp -CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35778889998888 7899999999999999999999999999 9999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHH
Q 008039 85 DYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLV 164 (580)
Q Consensus 85 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~ 164 (580)
+++ +..|++. ..|+.
T Consensus 79 ~al---~~~p~~~--------------------------------------------------------------~~~~~ 93 (208)
T 3urz_A 79 ELL---QKAPNNV--------------------------------------------------------------DCLEA 93 (208)
T ss_dssp HHH---HHCTTCH--------------------------------------------------------------HHHHH
T ss_pred HHH---HHCCCCH--------------------------------------------------------------HHHHH
Confidence 965 3333221 36788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
+|.+++.+|++++|+..|++++++. |++..+...+
T Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------------P~~~~a~~~l------- 128 (208)
T 3urz_A 94 CAEMQVCRGQEKDALRMYEKILQLE--------------------------------------ADNLAANIFL------- 128 (208)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH-------
Confidence 9999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 245 RRRTAAIAALDAGL--YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 245 ~~k~~G~~~~~~g~--y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
|..++..|+ +..++..|.+++.. .+ ....++++|.++..+|+|++|+.+|+++|+++|+.
T Consensus 129 -----g~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 129 -----GNYYYLTAEQEKKKLETDYKKLSSP-----TK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHC---CC-----CH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -----HHHHHHHhHHHHHHHHHHHHHHhCC-----Cc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 878776654 56677888887653 11 34578889999999999999999999999999974
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=164.02 Aligned_cols=221 Identities=12% Similarity=0.083 Sum_probs=176.7
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+.....++..|..++ ..|++.+|+..|++++.++|.+. .++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 45 ~~~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 45 SSMCLELALEGERLC---NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 456677778888887 68999999999999999999987 58899999999999999999999997733221100
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.......++.+|.+|+.+|++
T Consensus 122 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~ 142 (411)
T 4a1s_A 122 -----------------------------------------------------------RLGEAKSSGNLGNTLKVMGRF 142 (411)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------------------------------------------------------chHHHHHHHHHHHHHHHCCCH
Confidence 011234678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+..|++++.+..... ........+.. .|..++.
T Consensus 143 ~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~----------l~~~~~~ 178 (411)
T 4a1s_A 143 DEAAICCERHLTLARQLG----------------------------------DRLSEGRALYN----------LGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh----------------------------------chHHHHHHHHH----------HHHHHHH
Confidence 999999999998853210 01122222222 3999999
Q ss_pred cCC-----------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 256 AGL-----------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 256 ~g~-----------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
.|+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.|....
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 999 99999999999886211 123446779999999999999999999999999999775543
Q ss_pred ------HHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 318 ------ALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 318 ------A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++.+|.++..+|++++|+..|++++.+.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999885
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=143.08 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPS 133 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 133 (580)
+.+|.++.++..+|.+++..|++++|+..|++++. ..|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~------------------------------------- 41 (225)
T 2vq2_A 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALK---SDPKN------------------------------------- 41 (225)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-------------------------------------
T ss_pred CCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCccc-------------------------------------
Confidence 35788999999999999999999999999999662 22211
Q ss_pred cccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCC
Q 008039 134 FKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVS 213 (580)
Q Consensus 134 ~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~ 213 (580)
...|+.+|.++...|++++|+..|++++.+.
T Consensus 42 -------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------------------ 72 (225)
T 2vq2_A 42 -------------------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------------------ 72 (225)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------
T ss_pred -------------------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------------------
Confidence 1357789999999999999999999998762
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 008039 214 NNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY 292 (580)
Q Consensus 214 ~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~ 292 (580)
|+...+...+ |..++.. |++++|+..|.+++.. +. .+....+++++|.++
T Consensus 73 --------------~~~~~~~~~l------------~~~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 73 --------------PDSAEINNNY------------GWFLCGRLNRPAESMAYFDKALAD--PT-YPTPYIANLNKGICS 123 (225)
T ss_dssp --------------TTCHHHHHHH------------HHHHHTTTCCHHHHHHHHHHHHTS--TT-CSCHHHHHHHHHHHH
T ss_pred --------------CCChHHHHHH------------HHHHHHhcCcHHHHHHHHHHHHcC--cC-CcchHHHHHHHHHHH
Confidence 3333333222 8999999 9999999999999992 22 455789999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 293 RSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 293 ~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++|+..+.+++..+|++..+++.+|.++..+|++++|+..|++++++
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=158.33 Aligned_cols=212 Identities=13% Similarity=0.046 Sum_probs=162.7
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCC
Q 008039 29 DARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSS 102 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~ 102 (580)
.|..++ ..|++.+|+..|.+|+.+ .|..+.++..+|.++..+|++++|+..+++++...+..++.
T Consensus 109 ~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 179 (383)
T 3ulq_A 109 RGMYEL---DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY------ 179 (383)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT------
T ss_pred HHHHHH---HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc------
Confidence 666665 679999999999999998 33456889999999999999999999999977432221100
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLL 182 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l 182 (580)
.....+.+..+|.+|..+|++++|+..|
T Consensus 180 ----------------------------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 207 (383)
T 3ulq_A 180 ----------------------------------------------------NIRLLQCHSLFATNFLDLKQYEDAISHF 207 (383)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------------------------------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 0011246788999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 183 QTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 183 ~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
++++.+.+.. ++. ..+..+.. .|..++..|+|++
T Consensus 208 ~~al~~~~~~-----------------------------------~~~~~~~~~~~~----------lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 208 QKAYSMAEAE-----------------------------------KQPQLMGRTLYN----------IGLCKNSQSQYED 242 (383)
T ss_dssp HHHHHHHHHT-----------------------------------TCHHHHHHHHHH----------HHHHHHHTTCHHH
T ss_pred HHHHHHHHHc-----------------------------------CChHHHHHHHHH----------HHHHHHHCCCHHH
Confidence 9999885420 111 12222333 3999999999999
Q ss_pred HHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCc--------------------
Q 008039 262 AIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSC-------------------- 315 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~-------------------- 315 (580)
|+.+|.+++.+...... +..+.+++++|.++..+|++++|+..+.+++.+ +|..
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999996322223 667899999999999999999999999999987 3322
Q ss_pred ----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 ----------------IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ----------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.+|..+|++++|+..|++++++.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3356677888888888888888888887774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=154.10 Aligned_cols=206 Identities=12% Similarity=0.008 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHHHHhh-------C---hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 22 IVDKYIRDARTLIATQ-------E---HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-------~---~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
...+++++|...+.+. . .+++++|+..|+++ |.++..+|+|++|+++|++++....
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~ 68 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQK 68 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3456666666655321 1 33699999999998 6678899999999999999773211
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
... + .......|..+|.+|..
T Consensus 69 ~~~-~----------------------------------------------------------~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 69 KAG-N----------------------------------------------------------EDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HTT-C----------------------------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HhC-C----------------------------------------------------------HHHHHHHHHHHHHHHHH
Confidence 100 0 00112468899999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G 250 (580)
+|++++|+.+|++++.+.+.. .+... +..+. ..|
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~-----------------------------------g~~~~~a~~~~----------~lg 124 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHR-----------------------------------GQFRRGANFKF----------ELG 124 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHH----------HHH
Confidence 999999999999999985420 11111 22222 339
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-------HHHH
Q 008039 251 IAALDA-GLYSEAIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-------ALDT 321 (580)
Q Consensus 251 ~~~~~~-g~y~eAi~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-------A~~~ 321 (580)
.++... |+|++|+.+|.+++.+.+.... .....++.++|.++..+|+|++|+..|++++.++|++.. ++++
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 9999999999999997421111 123578999999999999999999999999999987643 6899
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++..+|++++|+..|++++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999776
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-15 Score=134.88 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
...++..+|.+++..|++++|+..|++++. ..|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~------------------------------------------- 40 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD---ADAF------------------------------------------- 40 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC---TTSC-------------------------------------------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcc-------------------------------------------
Confidence 356788899999999999999999998551 1110
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
..+.++.+|.+++..|++++|+..|++++.+.
T Consensus 41 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------- 72 (186)
T 3as5_A 41 -------------------DVDVALHLGIAYVKTGAVDRGTELLERSLADA----------------------------- 72 (186)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------------
Confidence 12357789999999999999999999998762
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh
Q 008039 219 PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI 298 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~ 298 (580)
|+...+...+ |..++..|++++|+..|.+++.. .|....+++++|.++..+|++
T Consensus 73 ---------~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 73 ---------PDNVKVATVL------------GLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp ---------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------CCCHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcH
Confidence 3333333222 88999999999999999999997 344788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 299 ~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
++|+..+.+++..+|+++.+++.+|.++..+|++++|+..|++++++.
T Consensus 127 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999998884
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=148.65 Aligned_cols=207 Identities=15% Similarity=0.099 Sum_probs=159.0
Q ss_pred hhhHHHHHHHHHHHHhc-------C-CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH
Q 008039 39 HSEIASALSLLDAALAL-------S-PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS 110 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l-------~-P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 110 (580)
.|++.+|+..|++|+++ + |....++..+|.+++.+|+|++|+..|++++...+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------- 76 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKT----------------- 76 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-----------------
Confidence 45566666666666652 3 7788999999999999999999999999977332111
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 111 RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
+.++ +......+..+|.+|+.+|++++|+..|++++.+..
T Consensus 77 ------~~~~----------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 77 ------LGKD----------------------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp ------TCTT----------------------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ------cCCc----------------------------------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 0000 011234678899999999999999999999998743
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
... .++ +.....+... |..++..|+|++|+..|.++
T Consensus 117 ~~~---------------------------------~~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 117 KVL---------------------------------GKFHPDVAKQLNNL----------ALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHH---------------------------------CTTCHHHHHHHHHH----------HHHHHTTTCHHHHHHHHHHH
T ss_pred HHc---------------------------------CCCChHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHH
Confidence 210 011 2333333333 99999999999999999999
Q ss_pred Hhcc---CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------
Q 008039 270 VDGR---RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL----------------------------------- 311 (580)
Q Consensus 270 L~~~---~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----------------------------------- 311 (580)
+.+. .+...+....++.++|.++..+|++++|+..+.+++.+
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence 9861 11224567889999999999999999999999999986
Q ss_pred --------------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 312 --------------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 312 --------------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|....++..+|.+|..+|++++|+..|++++++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566789999999999999999999999999754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-15 Score=157.72 Aligned_cols=218 Identities=10% Similarity=0.085 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
....++..|..++ ..|++.+|+..|++++.+.|.++ .++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 8 ~~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 82 (406)
T 3sf4_A 8 SCLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-- 82 (406)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHH---HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--
Confidence 4455677888877 68999999999999999999984 67889999999999999999999997733211100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
.....+.++.+|.+|+.+|++++
T Consensus 83 ---------------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 83 ---------------------------------------------------------QLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------------------------------------cHHHHHHHHHHHHHHHHcCCHHH
Confidence 01113467889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
|+..|++++.+.+.. ++. ..+..+. ..|..++..
T Consensus 106 A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~----------~l~~~~~~~ 140 (406)
T 3sf4_A 106 AIVCCQRHLDISREL-----------------------------------NDKVGEARALY----------NLGNVYHAK 140 (406)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------TCHHHHHHHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----------------------------------ccccchHHHHH----------HHHHHHHHc
Confidence 999999999886431 111 1122222 339999999
Q ss_pred CC--------------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 257 GL--------------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 257 g~--------------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
|+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.|..
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 99999999999886321 2234567899999999999999999999999999986654
Q ss_pred H------HHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 I------QALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~------~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
. .++..+|.++..+|++++|+..|++++++.
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 3 399999999999999999999999999885
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=154.44 Aligned_cols=196 Identities=14% Similarity=-0.007 Sum_probs=155.0
Q ss_pred ChhhHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 38 EHSEIASALSLLDAALAL---------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l---------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|++++|++.|++|+++ +|.....|.++|.+|..+|+|++|+.+|++++...+..+...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~----------- 131 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY----------- 131 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-----------
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-----------
Confidence 579999999999999987 788899999999999999999999999999763322211000
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL--GLMEDAMVLLQTGK 186 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l--G~~eeAi~~l~~al 186 (580)
.......+..+|.++... +++++|+.+|++++
T Consensus 132 ----------------------------------------------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 132 ----------------------------------------------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp ----------------------------------------------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred ----------------------------------------------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 001112466677777655 56999999999999
Q ss_pred HHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHH
Q 008039 187 RLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA---ALDAGLYSEAI 263 (580)
Q Consensus 187 ~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~---~~~~g~y~eAi 263 (580)
++. |++..+...+ |.. +...+++++|+
T Consensus 166 ~~~--------------------------------------p~~~~~~~~~------------~~~~~~l~~~~~~~~al 195 (472)
T 4g1t_A 166 EKK--------------------------------------PKNPEFTSGL------------AIASYRLDNWPPSQNAI 195 (472)
T ss_dssp HHS--------------------------------------TTCHHHHHHH------------HHHHHHHHHSCCCCCTH
T ss_pred HhC--------------------------------------CCCHHHHHHH------------HHHHHHhcCchHHHHHH
Confidence 873 5555554433 444 34568889999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 264 RHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 264 ~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
..|.+++++ .|.+..++.++|.++..+ |++++|+..+++++.++|++..++..+|.+|...|++++|+..|
T Consensus 196 ~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 196 DPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp HHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 999999998 345778888888877665 57889999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008039 340 EHLKLL 345 (580)
Q Consensus 340 ~~al~l 345 (580)
++++++
T Consensus 271 ~~al~~ 276 (472)
T 4g1t_A 271 KKALEY 276 (472)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999887
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=142.40 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=150.8
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
+....-++..|..++ ..|++++|+..|.++++ |.++.++..+|.++.. .+++++|+..|++++.. .
T Consensus 3 ~~~~~a~~~lg~~~~---~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~-- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSY---KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N-- 72 (273)
T ss_dssp --CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T--
T ss_pred CCChHHHHHHHHHHH---hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C--
Confidence 344566777887777 57899999999999999 8889999999999999 99999999999996621 0
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH---- 171 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~---- 171 (580)
....++.+|.+|..
T Consensus 73 --------------------------------------------------------------~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 73 --------------------------------------------------------------YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHTSSS
T ss_pred --------------------------------------------------------------CHHHHHHHHHHHhCCCCc
Confidence 01357778888888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
.|++++|+.+|++++.+. +..+ ++.. |.
T Consensus 91 ~~~~~~A~~~~~~a~~~~----------------------------------------~~~a--~~~l----------g~ 118 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK----------------------------------------YAEG--CASL----------GG 118 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----------------------------------------CHHH--HHHH----------HH
T ss_pred ccCHHHHHHHHHHHHHcC----------------------------------------CccH--HHHH----------HH
Confidence 888888888888887541 1122 2222 77
Q ss_pred HHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 252 AALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 252 ~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
.+.. .+++++|+..|.++++.. ...+++++|.+|.. .+++++|+..+.++++. +++.+++.+|
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg 189 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACDLN-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAG 189 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence 8888 888888888888888852 46678888888888 88888888888888877 4578888888
Q ss_pred HHHHh----cCChhHHHHHHHHHHHH
Q 008039 324 LLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 324 ~~~~~----lg~~~eAi~~~~~al~l 345 (580)
.+|.. .+++++|+..|++++++
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88888 88888888888888655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=151.54 Aligned_cols=217 Identities=10% Similarity=0.087 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE----LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~----~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
...++..|..++ ..|++.+|+..|++++.++|.++ .++..+|.+++.+|+|++|+..+++++...+..++
T Consensus 5 ~~~l~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 78 (338)
T 3ro2_A 5 CLELALEGERLC---KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD--- 78 (338)
T ss_dssp HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHH---HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc---
Confidence 456677787777 68999999999999999999984 67889999999999999999999997733211100
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
.......++.+|.+++.+|++++|
T Consensus 79 --------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 102 (338)
T 3ro2_A 79 --------------------------------------------------------QLGEAKASGNLGNTLKVLGNFDEA 102 (338)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------------------------------------cHHHHHHHHHHHHHHHHccCHHHH
Confidence 011134678899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
+..|++++++.+.. ++.. .+..+. ..|..++..|
T Consensus 103 ~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~----------~l~~~~~~~~ 137 (338)
T 3ro2_A 103 IVCCQRHLDISREL-----------------------------------NDKVGEARALY----------NLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----------------------------------cCchHHHHHHH----------HHHHHHHHcC
Confidence 99999999885420 1111 122222 3399999999
Q ss_pred C--------------------HHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 258 L--------------------YSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 258 ~--------------------y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
+ |++|+..|.+++.+... ...+....++.++|.++..+|++++|+..+.+++.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 9 99999999999886211 1234467799999999999999999999999999886543
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 253 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 253 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999885
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-15 Score=142.67 Aligned_cols=177 Identities=11% Similarity=0.066 Sum_probs=146.9
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
..+..+..+|.+++..|+|++|+..|++++.. . .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~-~------------------------------------------ 36 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWEL---H-K------------------------------------------ 36 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---S-C------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---h-c------------------------------------------
Confidence 45678999999999999999999999997622 1 0
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
....|+.+|.+++.+|++++|+..|++++.+.+..
T Consensus 37 --------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------------------- 71 (258)
T 3uq3_A 37 --------------------DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------------------- 71 (258)
T ss_dssp --------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------------------
T ss_pred --------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------------------------
Confidence 01357889999999999999999999999886430
Q ss_pred CCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC--------------------
Q 008039 218 TPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-------------------- 276 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-------------------- 276 (580)
.|+... ...+... |..++..|+|++|+..|.+++.+. +.
T Consensus 72 ---------~~~~~~~~~~~~~l----------~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 72 ---------RADYKVISKSFARI----------GNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp ---------TCCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------ccchHHHHHHHHHH----------HHHHHHcccHHHHHHHHHHHHhcC-chhHHHHHHhHHHHHHHHHHHH
Confidence 012211 2222223 889999999999999999998842 21
Q ss_pred --CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 --PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 --~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..|....+++++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 256688999999999999999999999999999999999999999999999999999999999999887
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-14 Score=148.23 Aligned_cols=220 Identities=12% Similarity=0.031 Sum_probs=152.7
Q ss_pred HHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 29 DARTLIATQEHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 29 ~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
.++.+| ..|+|..|+..+++....+|.+. .+...++++|+.+|++++|+..++.. .|.+. .
T Consensus 5 ~~~~~~---~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~---------~ 66 (291)
T 3mkr_A 5 DVKNAF---YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPEL---------Q 66 (291)
T ss_dssp HHHHHH---HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHH---------H
T ss_pred HHHHHH---HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhH---------H
Confidence 345556 58899999999999888888874 57788899999999999999866541 11000 0
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
.+ ...+..+....+ ....-+.+-..+....++.....++.+|.++...|++++|+..|++
T Consensus 67 a~-~~la~~~~~~~~----------------~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--- 126 (291)
T 3mkr_A 67 AV-RMFAEYLASHSR----------------RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--- 126 (291)
T ss_dssp HH-HHHHHHHHCSTT----------------HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---
T ss_pred HH-HHHHHHHcCCCc----------------HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---
Confidence 00 011111111100 0000111111122221233345678899999999999999998764
Q ss_pred HHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 188 LATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 188 l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
|++..+...+ |.++.+.|++++|+..|.
T Consensus 127 ----------------------------------------~~~~~~~~~l------------~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 127 ----------------------------------------GDSLECMAMT------------VQILLKLDRLDLARKELK 154 (291)
T ss_dssp ----------------------------------------CCSHHHHHHH------------HHHHHHTTCHHHHHHHHH
T ss_pred ----------------------------------------CCCHHHHHHH------------HHHHHHCCCHHHHHHHHH
Confidence 2223333333 889999999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHH----HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFA----YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a----~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+++... |. .. +.+++.+ +...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++
T Consensus 155 ~~~~~~-p~----~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 155 KMQDQD-ED----AT--LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHC-TT----CH--HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhC-cC----cH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999972 32 32 2333333 3345899999999999999999999999999999999999999999999998
Q ss_pred HH
Q 008039 344 LL 345 (580)
Q Consensus 344 ~l 345 (580)
++
T Consensus 228 ~~ 229 (291)
T 3mkr_A 228 DK 229 (291)
T ss_dssp HH
T ss_pred Hh
Confidence 88
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-15 Score=143.81 Aligned_cols=175 Identities=10% Similarity=-0.100 Sum_probs=147.9
Q ss_pred HhcCCCc-HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 53 LALSPRL-ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 53 l~l~P~~-~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
-..+|.. +.++..+|.+++..|++++|+..|++++. ..|.
T Consensus 29 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~------------------------------------ 69 (252)
T 2ho1_A 29 TDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDPS------------------------------------ 69 (252)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCTT------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCC------------------------------------
Confidence 4567776 88999999999999999999999999662 2111
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFP 211 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~ 211 (580)
....|+.+|.+++..|++++|+..|++++++.
T Consensus 70 --------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---------------------- 101 (252)
T 2ho1_A 70 --------------------------SADAHAALAVVFQTEMEPKLADEEYRKALASD---------------------- 101 (252)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------
T ss_pred --------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------
Confidence 12357889999999999999999999998762
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH
Q 008039 212 VSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA 291 (580)
Q Consensus 212 ~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a 291 (580)
|+...+...+ |..++..|+|++|+..|.+++.. +. .+....+++++|.+
T Consensus 102 ----------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~~la~~ 150 (252)
T 2ho1_A 102 ----------------SRNARVLNNY------------GGFLYEQKRYEEAYQRLLEASQD--TL-YPERSRVFENLGLV 150 (252)
T ss_dssp ----------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHTTC--TT-CTTHHHHHHHHHHH
T ss_pred ----------------cCcHHHHHHH------------HHHHHHHhHHHHHHHHHHHHHhC--cc-CcccHHHHHHHHHH
Confidence 3333333332 89999999999999999999981 11 45688999999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+|++++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++++
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=133.53 Aligned_cols=94 Identities=19% Similarity=0.275 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
++.|+.+++.|+|++|+..|+++|++ .|.++.+|+++|.||..+|++++|+.+|+++|+++|+++.+|+++|.++
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34499999999999999999999998 4558999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++|+.+|++++++
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=153.63 Aligned_cols=143 Identities=15% Similarity=0.055 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLL 237 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll 237 (580)
.+.+..+|.+|+.+|++++|+..|++++.+.+.. ++. .....+.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~ 231 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----------------------------------GDKAAERRAYS 231 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-----------------------------------CCcHHHHHHHH
Confidence 3467889999999999999999999999885420 111 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
. .|..++..|+|++|+..|.+++.+.+. ........++.++|.++..+|++++|+..+.+++.+.+..
T Consensus 232 ~----------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 232 N----------LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp H----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred H----------HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 3 399999999999999999999987321 1123347899999999999999999999999999986544
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 302 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 302 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999885
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-14 Score=139.50 Aligned_cols=190 Identities=11% Similarity=-0.001 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcC
Q 008039 23 VDKYIRDARTLIATQE----HSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~----~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
..-+...+..+. . .+++++|+..|.++++++ ++.++..+|.++.. .+++++|+..|++++.. .
T Consensus 38 ~~a~~~lg~~~~---~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~- 108 (273)
T 1ouv_A 38 NSGCFNLGVLYY---QGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL---K- 108 (273)
T ss_dssp HHHHHHHHHHHH---HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T-
T ss_pred HHHHHHHHHHHH---cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc---C-
Confidence 344555555555 4 789999999999999996 78999999999999 99999999999996621 0
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh---
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH--- 171 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~--- 171 (580)
....++.+|.+|..
T Consensus 109 ---------------------------------------------------------------~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 109 ---------------------------------------------------------------YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHHHHCSS
T ss_pred ---------------------------------------------------------------CccHHHHHHHHHHcCCC
Confidence 01367889999999
Q ss_pred -cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 172 -LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 -lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
.|++++|+.+|++++++. +..+. +.. |
T Consensus 126 ~~~~~~~A~~~~~~a~~~~----------------------------------------~~~a~--~~l----------g 153 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN----------------------------------------DGDGC--TIL----------G 153 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT----------------------------------------CHHHH--HHH----------H
T ss_pred cccCHHHHHHHHHHHHhcC----------------------------------------cHHHH--HHH----------H
Confidence 999999999999998651 12222 222 8
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 251 IAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 251 ~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
..+.. .+++++|+..|.++++.. ...+++++|.+|.. .+++++|+..+.++++.+| +.+++.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l 224 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNL 224 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 88988 999999999999999962 46889999999999 9999999999999999976 8999999
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHH
Q 008039 323 ALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~----lg~~~eAi~~~~~al~l 345 (580)
|.+|.. .+++++|+..|++++++
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999999 99999999999999887
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=138.17 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+|+.+|++++|+..|++++++. |++..+...+
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~a~~~l--- 71 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQ--------------------------------------ERDPKAHRFL--- 71 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH---
Confidence 46788999999999999999999999873 5555555444
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHH-HHHHHhcCCCcHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIAD-CNKTLALEPSCIQAL 319 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~-~~~Al~ldP~~~~A~ 319 (580)
|.+++..|+|++|+.+|.++|++ .|.++.+|+++|.++..+|++++|+.. +++|++++|+++.++
T Consensus 72 ---------g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 72 ---------GLLYELEENTDKAVECYRRSVEL-----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred ---------HHHHHHcCchHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 99999999999999999999997 455788999999999999999887765 589999999999999
Q ss_pred HHHHHHHHhcCC
Q 008039 320 DTRALLLETIRC 331 (580)
Q Consensus 320 ~~ra~~~~~lg~ 331 (580)
..++.++...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 999999988875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-14 Score=144.70 Aligned_cols=210 Identities=12% Similarity=0.056 Sum_probs=165.9
Q ss_pred chhhhHHHHHHHHHHHHHh----hChhh-------HHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 18 SNRKIVDKYIRDARTLIAT----QEHSE-------IASALSLLDAALA-LSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~----~~~~d-------~~~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.+|..++-|+..+..+... ...|+ +++|+..|++||. ++|++..+|...|.++..+|++++|+..|++
T Consensus 45 ~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 124 (308)
T 2ond_A 45 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNR 124 (308)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455555666666555421 02355 4899999999999 7999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHH
Q 008039 86 YIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVL 165 (580)
Q Consensus 86 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~L 165 (580)
++ +..|.+. . ..|+.+
T Consensus 125 al---~~~p~~~------------------------------------------------------------~-~~~~~~ 140 (308)
T 2ond_A 125 LL---AIEDIDP------------------------------------------------------------T-LVYIQY 140 (308)
T ss_dssp HH---TSSSSCT------------------------------------------------------------H-HHHHHH
T ss_pred HH---hccccCc------------------------------------------------------------c-HHHHHH
Confidence 66 2222111 0 147788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
|.++...|++++|+..|++++++. |....+ ++..
T Consensus 141 ~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------p~~~~~--~~~~------ 174 (308)
T 2ond_A 141 MKFARRAEGIKSGRMIFKKAREDA--------------------------------------RTRHHV--YVTA------ 174 (308)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTST--------------------------------------TCCTHH--HHHH------
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--------------------------------------CCCHHH--HHHH------
Confidence 999999999999999999998652 222222 1211
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-cHHHHH
Q 008039 246 RRTAAIAALD-AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---EPS-CIQALD 320 (580)
Q Consensus 246 ~k~~G~~~~~-~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---dP~-~~~A~~ 320 (580)
+...+. .|++++|+..|+++|.. .|....+|.+++..+..+|++++|+..|++++.. +|+ ....|.
T Consensus 175 ----a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 175 ----ALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp ----HHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 323222 79999999999999997 3447899999999999999999999999999995 664 788999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+..+...|++++|...+++++++.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999998883
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=156.09 Aligned_cols=215 Identities=12% Similarity=0.049 Sum_probs=168.5
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
+...|..++ ..|++.+|+..|++++.+ .|....++..+|.++..+|++++|+..|++++...+...+
T Consensus 89 ~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---- 161 (411)
T 4a1s_A 89 YSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD---- 161 (411)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc----
Confidence 334444444 469999999999999999 6888899999999999999999999999997733211100
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC-----
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL----- 174 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~----- 174 (580)
.......++.+|.+|..+|+
T Consensus 162 -------------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~~~ 186 (411)
T 4a1s_A 162 -------------------------------------------------------RLSEGRALYNLGNVYHAKGKHLGQR 186 (411)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHHHHHcCcccccc
Confidence 01112467889999999999
Q ss_pred ------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 008039 175 ------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL 242 (580)
Q Consensus 175 ------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~ 242 (580)
+++|+.+|++++.+..... ........+..
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~---- 228 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLG----------------------------------DRGAQGRACGN---- 228 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHH----
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHH----
Confidence 9999999999988753200 01122222222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------ 315 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------ 315 (580)
.|..++..|+|++|+.+|.+++.+.+. ........+++++|.+|..+|++++|+..+++++.+.|..
T Consensus 229 ------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 229 ------LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 399999999999999999999997321 1122335589999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999998884
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=151.75 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=163.4
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALS------PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~------P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
++..|...+ ..|++.+|+..|.+|+.+. |..+.++..+|.++..+|++++|+..+++++...+..++..
T Consensus 104 ~~~~g~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-- 178 (378)
T 3q15_A 104 LFFRGMYEF---DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS-- 178 (378)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--
T ss_pred HHHHHHHHH---HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--
Confidence 334555555 5799999999999999884 34567899999999999999999999999773322111000
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
......+..+|.+|..+|++++|+
T Consensus 179 --------------------------------------------------------~~~~~~~~~lg~~y~~~~~~~~A~ 202 (378)
T 3q15_A 179 --------------------------------------------------------IRTIQSLFVIAGNYDDFKHYDKAL 202 (378)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------hhHHHHHHHHHHHHHHhCCHHHHH
Confidence 011235788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++.+.... .........+... |.+++..|+|
T Consensus 203 ~~~~~al~~~~~~----------------------------------~~~~~~~~~~~~l----------g~~y~~~~~~ 238 (378)
T 3q15_A 203 PHLEAALELAMDI----------------------------------QNDRFIAISLLNI----------ANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHHHHHHT----------------------------------TCHHHHHHHHHHH----------HHHHHHHTCH
T ss_pred HHHHHHHHHHHHc----------------------------------CCHHHHHHHHHHH----------HHHHHHCCCH
Confidence 9999999885320 0111222233333 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----Cc-------------------
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-----SC------------------- 315 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-----~~------------------- 315 (580)
++|+.+|.+++.+......+....+++++|.++..+|++++|+..+++++.+.+ .+
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 999999999999532212455689999999999999999999999999998732 22
Q ss_pred -----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q 008039 316 -----------------IQALDTRALLLETIRCLPDCLHDLEHLKLLYNA 348 (580)
Q Consensus 316 -----------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~ 348 (580)
...+..+|.+|..+|++++|+..|++++++...
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 235566888888888888888888888877433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=132.32 Aligned_cols=173 Identities=17% Similarity=0.100 Sum_probs=145.2
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
...-++..+..++ ..|++.+|+..|++++.++|.+..++..+|.+++..|++++|+..+++++. ..|.+
T Consensus 7 ~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~----- 75 (186)
T 3as5_A 7 RQVYYRDKGISHA---KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA---DAPDN----- 75 (186)
T ss_dssp HHHHHHHHHHHHH---HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTC-----
T ss_pred hhHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC-----
Confidence 3455667777777 689999999999999999999999999999999999999999999999662 21110
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+++..|++++|+..
T Consensus 76 ---------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 76 ---------------------------------------------------------VKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHH
Confidence 13577899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++.+. |+...+...+ |..++..|++++
T Consensus 99 ~~~~~~~~--------------------------------------~~~~~~~~~~------------a~~~~~~~~~~~ 128 (186)
T 3as5_A 99 LIKVAEAN--------------------------------------PINFNVRFRL------------GVALDNLGRFDE 128 (186)
T ss_dssp HHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCHHH
T ss_pred HHHHHhcC--------------------------------------cHhHHHHHHH------------HHHHHHcCcHHH
Confidence 99998762 3333333222 899999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..
T Consensus 129 A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 129 AIDSFKIALGL-----RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHhc-----CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999997 3446889999999999999999999999999999988754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=145.91 Aligned_cols=184 Identities=10% Similarity=-0.064 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------ccCh-------HHHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLY-------LRRF-------KDVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~-------l~r~-------~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|+..|+++|.++|.++.+|...|..+.. +|++ ++|+..|++++.. ..|
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--~~p-------------- 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLK-------------- 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT--TTT--------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH--hCc--------------
Confidence 789999999999999999999999999874 5886 9999999997621 111
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
+ ....|+.+|.++...|++++|+..|++++++
T Consensus 97 -----------~-------------------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 97 -----------K-------------------------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp -----------T-------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -----------c-------------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 1 1135788899999999999999999999865
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
. |+... +...+ |..+.+.|++++|+..|.
T Consensus 129 ~--------------------------------------p~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 129 E--------------------------------------DIDPTLVYIQY------------MKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp S--------------------------------------SSCTHHHHHHH------------HHHHHHHHCHHHHHHHHH
T ss_pred c--------------------------------------ccCccHHHHHH------------HHHHHHhcCHHHHHHHHH
Confidence 2 33322 33222 888889999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFAYRS-SGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a~~~-lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++... | ....+|...+..... +|++++|+..|+++|+++|+++.+|..+|.++..+|++++|+..|++++..
T Consensus 159 ~a~~~~-p----~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDA-R----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTST-T----CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcC-C----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999972 3 345667666655433 799999999999999999999999999999999999999999999999764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=138.88 Aligned_cols=62 Identities=10% Similarity=-0.004 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE---LALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~---~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
...++..|..++ ..|++.+|+..|++++...|.++ .++..+|.+++.+|+|++|+..|++++
T Consensus 4 ~~~~~~~a~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 4 PNEIYATAQQKL---QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345677888887 68999999999999999999874 789999999999999999999999966
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-15 Score=146.53 Aligned_cols=217 Identities=15% Similarity=0.057 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALAL------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.-+...+..++ ..|++.+|+..+++++.+ .|....++..+|.++..+|+|++|+..+++++...+..++
T Consensus 44 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 118 (338)
T 3ro2_A 44 AIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-- 118 (338)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--
Confidence 44556666665 579999999999999998 6677889999999999999999999999997733221100
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC---
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL--- 174 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~--- 174 (580)
.....+.++.+|.++..+|+
T Consensus 119 ---------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 119 ---------------------------------------------------------KVGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHHTSS
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHHHHcCcccc
Confidence 00112467889999999999
Q ss_pred -----------------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 175 -----------------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 175 -----------------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
+++|+..|++++.+.... .........+.
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~----------------------------------~~~~~~~~~~~ 187 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL----------------------------------GDRAAQGRAFG 187 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------TCHHHHHHHHH
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc----------------------------------CCHHHHHHHHH
Confidence 999999999988774320 00111122222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC- 315 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~- 315 (580)
..|..++..|+|++|+..|.+++.+.+. ...+....+++++|.++..+|++++|+..+.+++.+.|..
T Consensus 188 ----------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 188 ----------NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp ----------HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 3399999999999999999999987311 1123345689999999999999999999999999987765
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 -----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 -----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999884
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=146.65 Aligned_cols=169 Identities=18% Similarity=0.112 Sum_probs=145.8
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
|.+...+..+|..++..|++++|+..|++++ ...|++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al---~~~P~~~--------------------------------------- 151 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW---QLSNQNG--------------------------------------- 151 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHTTSCH---------------------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCcch---------------------------------------
Confidence 9999999999999999999999999999965 3333222
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
.+++.||.++..+|++++|+..|++++.+.
T Consensus 152 -----------------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--------------------------- 181 (287)
T 3qou_A 152 -----------------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD--------------------------- 181 (287)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---------------------------
T ss_pred -----------------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh---------------------------
Confidence 368889999999999999999999877552
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG 296 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg 296 (580)
|+.... .+.. +..+...+++.+|+..|.+++.. .|.+..+++++|.++...|
T Consensus 182 -----------p~~~~~--~~~~----------~~~l~~~~~~~~a~~~l~~al~~-----~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 182 -----------QDTRYQ--GLVA----------QIELLXQAADTPEIQQLQQQVAE-----NPEDAALATQLALQLHQVG 233 (287)
T ss_dssp -----------CSHHHH--HHHH----------HHHHHHHHTSCHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTT
T ss_pred -----------cchHHH--HHHH----------HHHHHhhcccCccHHHHHHHHhc-----CCccHHHHHHHHHHHHHcc
Confidence 433322 2222 67788899999999999999997 4558999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++|+..+.++++++|++ ..++.+++.++..+|+.++|+..|++++..
T Consensus 234 ~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=170.59 Aligned_cols=175 Identities=17% Similarity=0.010 Sum_probs=146.8
Q ss_pred hcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhh-hhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCC
Q 008039 54 ALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSL-KMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDP 132 (580)
Q Consensus 54 ~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 132 (580)
.++|.++.++.+.| +..|++++|++.|++++... ....
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------------- 426 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADG-------------------------------------- 426 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------------------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccc--------------------------------------
Confidence 57899998888877 88999999999999966110 0000
Q ss_pred CcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCC
Q 008039 133 SFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPV 212 (580)
Q Consensus 133 ~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~ 212 (580)
..+......|+.+|.+|+.+|++++|+..|+++++++
T Consensus 427 --------------------~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------------- 463 (681)
T 2pzi_A 427 --------------------VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------------- 463 (681)
T ss_dssp ---------------------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------------
T ss_pred --------------------cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------------
Confidence 0001112367889999999999999999999999874
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHH
Q 008039 213 SNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAY 292 (580)
Q Consensus 213 ~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~ 292 (580)
|++..+...+ |.+++..|+|++|+..|++++++ .|.+..+|+++|.++
T Consensus 464 ---------------p~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 464 ---------------GWRWRLVWYR------------AVAELLTGDYDSATKHFTEVLDT-----FPGELAPKLALAATA 511 (681)
T ss_dssp ---------------CCCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHH
T ss_pred ---------------cchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHH
Confidence 5555444443 99999999999999999999998 345789999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 293 RSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 293 ~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+|++++ +.+|+++|+++|++..+|+++|.++..+|++++|+.+|++++++
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred HHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 99999999 99999999999999999999999999999999999999999766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-14 Score=137.78 Aligned_cols=182 Identities=12% Similarity=-0.009 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
+...+..+|..++..|+|++|+..|++++ ...|+++... -.+...
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~--------------~~~~~~------------------ 47 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTI---ALNIDRTEMY--------------YWTNVD------------------ 47 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCHHHHHHH--------------HHHHSC------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCChHHH--------------HHhhhc------------------
Confidence 56778899999999999999999999966 3333222000 000000
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
.. .......++.+|.+|..+|++++|+..|++++++.
T Consensus 48 -------------~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------------------- 84 (208)
T 3urz_A 48 -------------KN-SEISSKLATELALAYKKNRNYDKAYLFYKELLQKA----------------------------- 84 (208)
T ss_dssp -------------TT-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred -------------ch-hhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------------------------
Confidence 00 00001123458999999999999999999999873
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-
Q 008039 219 PPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR- 297 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~- 297 (580)
|++..+...+ |.+++..|+|++|+..|.++|++ .|.+..+++++|.+|...|+
T Consensus 85 ---------p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 85 ---------PNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp ---------TTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHHhHH
Confidence 5555444433 99999999999999999999998 45588999999999987765
Q ss_pred -hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 298 -IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 298 -~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...++..+.+++..+| ...+++.+|.++..+|+|++|+.+|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4567778888765443 2357899999999999999999999999877
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=153.80 Aligned_cols=187 Identities=13% Similarity=0.004 Sum_probs=143.8
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---ccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLY---LRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVK 115 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~---l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (580)
.++|++|+..|++||+++|.++.++..+|.++.. .+++++|++.|++++ ++.|++.
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al---~l~p~~~------------------ 209 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI---RLNPDNQ------------------ 209 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH---HHCSSCH------------------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh---hcCCcch------------------
Confidence 4689999999999999999999999999998665 567789999999965 3333222
Q ss_pred hhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHH
Q 008039 116 LLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACC----HLGLMEDAMVLLQTGKRLATA 191 (580)
Q Consensus 116 ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~----~lG~~eeAi~~l~~al~l~~~ 191 (580)
+.+..+|..+. ..|++++|+..|++++.+.
T Consensus 210 --------------------------------------------~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-- 243 (472)
T 4g1t_A 210 --------------------------------------------YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-- 243 (472)
T ss_dssp --------------------------------------------HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--
Confidence 23444555444 4567788999998888762
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008039 192 AFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVD 271 (580)
Q Consensus 192 ~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~ 271 (580)
|+...+...+ |..+...|++++|+..|.++++
T Consensus 244 ------------------------------------~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 244 ------------------------------------PGVTDVLRSA------------AKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp ------------------------------------SSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------------ccHHHHHHHH------------HHHHHHcCchHHHHHHHHHHHH
Confidence 4444444333 8899999999999999999998
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCh
Q 008039 272 GRRGAPQGFLAECYMHRAFAYRSS-------------------GRIAESIADCNKTLALEPSCIQALDTRALLLETIRCL 332 (580)
Q Consensus 272 ~~~~~~~~~~a~~~~nra~a~~~l-------------------g~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~ 332 (580)
. .|.++.+++++|.+|... +.++.|+..+.+++.++|.+..+++.+|.++..+|++
T Consensus 276 ~-----~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 276 Y-----IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp H-----STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred h-----CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 7 455788899999887643 3467888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|+..|++++++
T Consensus 351 ~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 351 EEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-15 Score=137.43 Aligned_cols=81 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcCChhHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
.+|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.++++++|++ ..++..+|.++..+|++++|+.
T Consensus 91 ~~a~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 91 SPELKRLEQELAA-----NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp CHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred chHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 4578999999997 45578999999999999999999999999999999987 6699999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++..
T Consensus 166 ~y~~al~~ 173 (176)
T 2r5s_A 166 KYRRQLYS 173 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=133.68 Aligned_cols=105 Identities=19% Similarity=0.111 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------CCCC------CcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR-------RGAP------QGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~-------~~~~------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
..+..++..|+.+++.|+|++|+..|+++|.+. +|.. .|....+|+|+|.||..+|+|++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445666777999999999999999999999971 1111 355789999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=136.44 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=108.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
||.++...|++++|+..|++++... |+ .....+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--------------------------------------p~--~~~~~~~l----- 37 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--------------------------------------RQ--KSIKGFYF----- 37 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--------------------------------------HH--HHTTHHHH-----
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--------------------------------------cc--cHHHHHHH-----
Confidence 6899999999999999999987543 22 22223333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..+++.|+|++|+..|.++|++ .|.++.+|+++|.+|..+|++++|+..|.++|+++|+++.+++.+|.
T Consensus 38 -----a~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 38 -----AKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAE 107 (150)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999998 45589999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHH-HHHHHHH
Q 008039 325 LLETIRCLPDCLHD-LEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~-~~~al~l 345 (580)
++..+|++++|+.. +++++++
T Consensus 108 ~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 108 LLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHh
Confidence 99999999988876 5999988
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-14 Score=138.07 Aligned_cols=186 Identities=9% Similarity=-0.094 Sum_probs=151.3
Q ss_pred ChhhHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHH
Q 008039 38 EHSEIASALSLLDAALAL----SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRER 113 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l----~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (580)
..|++++|+..|++++.. +|.++.++..+|.+++.+|++++|+..|++++. ..|.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~----------------- 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA---IRPDM----------------- 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCC-----------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---cCCCc-----------------
Confidence 469999999999999998 467789999999999999999999999999662 22211
Q ss_pred HhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 008039 114 VKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 114 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~ 193 (580)
...|+.+|.+|+.+|++++|+..|++++.+.
T Consensus 77 ---------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 107 (275)
T 1xnf_A 77 ---------------------------------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD---- 107 (275)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred ---------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Confidence 1357889999999999999999999999873
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
|+...+...+ |..++..|+|++|+..|.+++.+.
T Consensus 108 ----------------------------------~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 108 ----------------------------------PTYNYAHLNR------------GIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp ----------------------------------TTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------ccccHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhC
Confidence 3333333332 999999999999999999999972
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
| .....+...+.+ ...|++++|+..+.+++..+|.+...+. ++.++...+++++|+..|++++..
T Consensus 142 -~----~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 142 -P----NDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp -T----TCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred -C----CChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc
Confidence 3 344444444444 6679999999999999999998877654 788888999999999999998544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-14 Score=127.19 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...|..+|.+|+..|++++|+..|++++++. |++..+...
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~-- 52 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--------------------------------------PENAILYSN-- 52 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH--
Confidence 3467889999999999999999999999873 544444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
. |.+++..|+|++|+..|+++|++ .|.+..+|+++|.++..+|++++|+.+|.++|+++|++..+
T Consensus 53 ~----------~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a 117 (126)
T 4gco_A 53 R----------AACLTKLMEFQRALDDCDTCIRL-----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117 (126)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred H----------hhHHHhhccHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence 3 99999999999999999999998 45588999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 319 LDTRALLL 326 (580)
Q Consensus 319 ~~~ra~~~ 326 (580)
+..++.++
T Consensus 118 ~~~l~~~l 125 (126)
T 4gco_A 118 REGVRNCL 125 (126)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99998875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.9e-14 Score=135.97 Aligned_cols=185 Identities=14% Similarity=0.011 Sum_probs=134.0
Q ss_pred cHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc
Q 008039 59 LELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS 138 (580)
Q Consensus 59 ~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 138 (580)
++..+..+|..++..|+|++|+..|++++. ..|.++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~---~~p~~~----------------------------------------- 38 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDN---RYPFGP----------------------------------------- 38 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTST-----------------------------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCh-----------------------------------------
Confidence 467889999999999999999999999662 222211
Q ss_pred chHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCC
Q 008039 139 VSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQT 218 (580)
Q Consensus 139 ~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~ 218 (580)
....+++.+|.+|+.+|++++|+..|++++++.
T Consensus 39 ------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~----------------------------- 71 (225)
T 2yhc_A 39 ------------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----------------------------- 71 (225)
T ss_dssp ------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred ------------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----------------------------
Confidence 001257889999999999999999999999873
Q ss_pred CCCCCCCCCCChHHH-HHHHHH--HHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-------
Q 008039 219 PPATPPRTMTESESV-SQLLSH--IKL------LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA------- 282 (580)
Q Consensus 219 ~~~~~~~~dPd~~~~-~~ll~~--~k~------~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a------- 282 (580)
|++..+ ..++.. +.. +..+...+..+...|++++|+..|.++|+. .|+. +...
T Consensus 72 ---------P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~P~~-~~a~~a~~~l~ 140 (225)
T 2yhc_A 72 ---------PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-YPNS-QYTTDATKRLV 140 (225)
T ss_dssp ---------TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-CTTC-TTHHHHHHHHH
T ss_pred ---------cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-CcCC-hhHHHHHHHHH
Confidence 333322 122222 000 000001123333478999999999999996 3442 2211
Q ss_pred -------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 283 -------ECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 283 -------~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
...+.+|.+|...|++.+|+..|+++|+..|+++ ++++.+|.++..+|++++|+..|+++...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 1226789999999999999999999999999986 78999999999999999999999988544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=140.80 Aligned_cols=207 Identities=12% Similarity=0.084 Sum_probs=166.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----------hHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIA-SALSLLDAALALSPRLELALELKARSLLYLRR----------FKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~-~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r----------~~eAi~~~~~~l 87 (580)
..+.+..|...-..+++....|++. +|+.+++++|.++|.+..+|..|+.++..+++ +++++..+..++
T Consensus 22 ~~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L 101 (331)
T 3dss_A 22 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 101 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 4557777777777777666777766 79999999999999999999999999999987 677888777754
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
..+| ...++|+..+.
T Consensus 102 ---~~~P--------------------------------------------------------------Kny~aW~hR~w 116 (331)
T 3dss_A 102 ---RVNP--------------------------------------------------------------KSYGTWHHRCW 116 (331)
T ss_dssp ---HHCT--------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---HhCC--------------------------------------------------------------CCHHHHHHHHH
Confidence 2222 12357788899
Q ss_pred HHHhcCC--HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGL--MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 168 a~~~lG~--~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
++..+|. +++++.++.+++.++ |.+-.+....
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d--------------------------------------prNy~AW~~R-------- 150 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYR-------- 150 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH--------
T ss_pred HHhccCcccHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH--------
Confidence 9999994 899999999999872 4444444433
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHh
Q 008039 246 RRTAAIAALDAGL-YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS--------------GRIAESIADCNKTLA 310 (580)
Q Consensus 246 ~k~~G~~~~~~g~-y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l--------------g~~~eAl~~~~~Al~ 310 (580)
+.++...|. ++++++.++++|+. +|.+..+|++|+.++..+ +.+++++.++.++|.
T Consensus 151 ----~~vl~~l~~~~~eel~~~~~~I~~-----~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 151 ----RFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp ----HHHHHHTTCCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhCcCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 777788888 69999999999997 456899999999999988 568999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc-C----------ChhHHHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETI-R----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~l-g----------~~~eAi~~~~~al~l 345 (580)
++|++..+|+.+.-++... | .+++++..++.++++
T Consensus 222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 9999999996554444444 3 578899999998888
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=139.67 Aligned_cols=219 Identities=12% Similarity=-0.009 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELK-------ARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~r-------A~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...+..+.-+ ..+|+..|+..|.+++.++|....+|..+ +.+|..++++.+++..+++.+ .++|..
T Consensus 8 ~~~~~~~~~~----~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~ 80 (282)
T 4f3v_A 8 ASLFESAVSM----LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMST 80 (282)
T ss_dssp HHHHHHHHHH----TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGG
T ss_pred HHHHHHHhcc----cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhh
Confidence 3444455443 47999999999999999999999999999 899999999999999999844 555543
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLME 176 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~e 176 (580)
..+.. .. .+--++-.+...+-. ..++.++.++...|+++
T Consensus 81 l~a~~----------------~~------~g~y~~~~~~v~~r~-------------------dl~LayA~~L~~~g~y~ 119 (282)
T 4f3v_A 81 LNARI----------------AI------GGLYGDITYPVTSPL-------------------AITMGFAACEAAQGNYA 119 (282)
T ss_dssp GCCEE----------------EC------CTTTCCCEEECSSHH-------------------HHHHHHHHHHHHHTCHH
T ss_pred hhhhh----------------cc------CCcccccccccCCHh-------------------HHHHHHHHHHHHCCCHH
Confidence 32211 00 000000001111111 13456789999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 008039 177 DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA 256 (580)
Q Consensus 177 eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~ 256 (580)
+|.+.|+..+.. .| ... ..+.. |..+++.
T Consensus 120 eA~~~l~~~~~~--------------------------------------~p--~~~-~~~~~----------a~l~~~~ 148 (282)
T 4f3v_A 120 DAMEALEAAPVA--------------------------------------GS--EHL-VAWMK----------AVVYGAA 148 (282)
T ss_dssp HHHHHHTSSCCT--------------------------------------TC--HHH-HHHHH----------HHHHHHT
T ss_pred HHHHHHHHHHhc--------------------------------------CC--chH-HHHHH----------HHHHHHc
Confidence 999998764421 23 333 44444 9999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHhcCCh
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNKTLALE--PS-CIQALDTRALLLETIRCL 332 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld--P~-~~~A~~~ra~~~~~lg~~ 332 (580)
|+|++|+.+|++++.. + .+. ...+++++|.++..+|++++|+..|++++... |. .+.+++.+|.++..+|+.
T Consensus 149 ~r~~dA~~~l~~a~~~--~--d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ERWTDVIDQVKSAGKW--P--DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp TCHHHHHHHHTTGGGC--S--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHhhcc--C--CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 9999999999988875 2 222 25689999999999999999999999999665 66 778999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|...|++++..
T Consensus 225 deA~~~l~~a~a~ 237 (282)
T 4f3v_A 225 SAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999877
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=144.17 Aligned_cols=182 Identities=12% Similarity=0.051 Sum_probs=143.9
Q ss_pred HHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHH
Q 008039 63 LELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDL 142 (580)
Q Consensus 63 ~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (580)
+..+|.+++..|+|++|+..|++++..++..++
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------------------------------------- 138 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKD----------------------------------------------- 138 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-----------------------------------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-----------------------------------------------
Confidence 345999999999999999999997733221110
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 008039 143 KKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPAT 222 (580)
Q Consensus 143 ~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 222 (580)
+....+.|+.+|.+|+.+|++++|+..+++++.+.+..
T Consensus 139 ------------~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------------------------ 176 (383)
T 3ulq_A 139 ------------RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------------------------------ 176 (383)
T ss_dssp ------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred ------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------------------------
Confidence 01123468899999999999999999999999885320
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHH
Q 008039 223 PPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAES 301 (580)
Q Consensus 223 ~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eA 301 (580)
.+.....+..+.. .|..+...|+|++|+.+|.+++.+.+. .+.+..+.+++|+|.+|..+|++++|
T Consensus 177 ---~~~~~~~~~~~~~----------lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 177 ---EAYNIRLLQCHSL----------FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp ---STTHHHHHHHHHH----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---ccchHHHHHHHHH----------HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 0001122222222 399999999999999999999987321 22344567999999999999999999
Q ss_pred HHHHHHHHh-----cC-CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 302 IADCNKTLA-----LE-PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 302 l~~~~~Al~-----ld-P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+.++.+++. .+ |....+++.+|.++..+|++++|+..|++++++.
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999 57 8899999999999999999999999999999884
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-14 Score=155.62 Aligned_cols=165 Identities=16% Similarity=0.038 Sum_probs=126.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
.|++++|+..|+++++++|.+..++..+|.+++.+|+|++|++.|++++ +..|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~---------------------- 56 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGH---------------------- 56 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTC----------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC----------------------
Confidence 4789999999999999999999999999999999999999999999966 222211
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
.+.|+.+|.+|..+|++++|+..|++++++.
T Consensus 57 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------- 87 (568)
T 2vsy_A 57 ----------------------------------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------- 87 (568)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred ----------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------
Confidence 2367889999999999999999999999873
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|++..+...+ |..++..|+|++|+..|.+++++ .
T Consensus 88 -----------------------------p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~-----~ 121 (568)
T 2vsy_A 88 -----------------------------PEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQL-----L 121 (568)
T ss_dssp -----------------------------TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred -----------------------------CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 4444443333 99999999999999999999997 3
Q ss_pred cccHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSS---GRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~l---g~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
|.+..+++++|.++..+ |++++|+..+.++++.+|++..++..++
T Consensus 122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 45789999999999999 9999999999999999999999988777
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-15 Score=158.24 Aligned_cols=146 Identities=16% Similarity=0.033 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+|+..|++++|+..|++++.+.+.. . +.+...... ..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~------------~---------------------~~~~~~~~~--~~ 192 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE------------S---------------------SFSNEEAQK--AQ 192 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC------------C---------------------CCCSHHHHH--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc------------c---------------------cCChHHHHH--HH
Confidence 468889999999999999999999999884310 0 000011110 01
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
......+...|.++++.|+|++|+..|+++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++++++|++..++
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 267 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 267 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 112234445599999999999999999999998 345889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHH-HHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDC-LHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eA-i~~~~~al~l 345 (580)
..++.++..+|++++| ...|++++..
T Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 268 TQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 5577777655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=133.43 Aligned_cols=91 Identities=12% Similarity=0.003 Sum_probs=88.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|++++.+ .|.++.+|+++|.++..+|+|++|+..|.+++.++|+++.+|+++|.+|..+
T Consensus 43 g~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 43 AYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999998 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 118 g~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999988
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-13 Score=135.28 Aligned_cols=194 Identities=12% Similarity=0.065 Sum_probs=152.8
Q ss_pred cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCc
Q 008039 55 LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSF 134 (580)
Q Consensus 55 l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 134 (580)
-+|....++..+|.+++..|+|++|+..|++++...+... .+
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----------------------~~--------------- 63 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-----------------------GH--------------- 63 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------------CS---------------
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc-----------------------CC---------------
Confidence 3577788999999999999999999999999774322110 00
Q ss_pred ccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCC
Q 008039 135 KCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSN 214 (580)
Q Consensus 135 ~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~ 214 (580)
......+.++.+|.+|+.+|++++|+..|++++.+......
T Consensus 64 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------- 104 (311)
T 3nf1_A 64 -------------------DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-------------------- 104 (311)
T ss_dssp -------------------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred -------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 00112346788999999999999999999999987432100
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHH
Q 008039 215 NHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFA 291 (580)
Q Consensus 215 ~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a 291 (580)
.........+... |..++..|+|++|+..|.+++.+.. +...+....+++++|.+
T Consensus 105 ------------~~~~~~~~~~~~l----------~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~ 162 (311)
T 3nf1_A 105 ------------KDHPAVAATLNNL----------AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALL 162 (311)
T ss_dssp ------------TTCHHHHHHHHHH----------HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHH----------HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 0012223333333 9999999999999999999998621 12246678899999999
Q ss_pred HHHcCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 292 YRSSGRIAESIADCNKTLAL--------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 292 ~~~lg~~~eAl~~~~~Al~l--------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
+..+|++++|+..+.+++.+ +|....+++.+|.++..+|++++|+..|++++++.+
T Consensus 163 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 163 CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 888899999999999999999999999999998753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.4e-14 Score=141.79 Aligned_cols=204 Identities=11% Similarity=0.003 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHHHHhh--C-hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 22 IVDKYIRDARTLIATQ--E-HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~--~-~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
...++++++...+... . .+++..|+..|+++ |.++..+|+|++|+++|.+++....... +
T Consensus 9 eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-- 71 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEAHANNR-S-- 71 (307)
T ss_dssp HHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHTT-C--
T ss_pred HHHHHHHHHHHHccccccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC-C--
Confidence 4445555555443210 1 35666666666655 6789999999999999999773211100 0
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDA 178 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeA 178 (580)
.......|..+|.+|..+|++++|
T Consensus 72 --------------------------------------------------------~~~~a~~~~~lg~~~~~~g~~~~A 95 (307)
T 2ifu_A 72 --------------------------------------------------------LFHAAKAFEQAGMMLKDLQRMPEA 95 (307)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHTTCGGGG
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHHHHhCCCHHHH
Confidence 001123577899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 179 MVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE-SVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 179 i~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~-~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
+.+|++++.+.... .+.. .+..+. ..|.++.. |
T Consensus 96 ~~~~~~Al~l~~~~-----------------------------------g~~~~~a~~~~----------~lg~~~~~-g 129 (307)
T 2ifu_A 96 VQYIEKASVMYVEN-----------------------------------GTPDTAAMALD----------RAGKLMEP-L 129 (307)
T ss_dssp HHHHHHHHHHHHTT-----------------------------------TCHHHHHHHHH----------HHHHHHTT-T
T ss_pred HHHHHHHHHHHHHc-----------------------------------CCHHHHHHHHH----------HHHHHHHc-C
Confidence 99999999884210 0111 122222 23889988 9
Q ss_pred CHHHHHHHHHHHHhccCCC-CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcC
Q 008039 258 LYSEAIRHFSKIVDGRRGA-PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQALDTRALLLETIR 330 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~-~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~A~~~ra~~~~~lg 330 (580)
+|++|+.+|.+++.+.+.. .......++.++|.+|..+|+|++|+..|++++.+.|.+ ..+++.+|.++..+|
T Consensus 130 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g 209 (307)
T 2ifu_A 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRA 209 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcC
Confidence 9999999999999974221 112246889999999999999999999999999986643 458899999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 008039 331 CLPDCLHDLEHLKLL 345 (580)
Q Consensus 331 ~~~eAi~~~~~al~l 345 (580)
++++|+..|++++ +
T Consensus 210 ~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 210 DYVAAQKCVRESY-S 223 (307)
T ss_dssp CHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHh-C
Confidence 9999999999997 6
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-13 Score=135.76 Aligned_cols=198 Identities=11% Similarity=-0.023 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc--ChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 23 VDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLR--RFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~--r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
..+.+...+.++. .|+ .++|+.+++++|.++|.+..+|..|+.++..++ +++++++.+..+| ..+|.+
T Consensus 32 y~~~~~~~~a~~~---~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L---~~nPk~--- 102 (306)
T 3dra_A 32 YKQIMGLLLALMK---AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA---LDNEKN--- 102 (306)
T ss_dssp HHHHHHHHHHHHH---TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH---HHCTTC---
T ss_pred HHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH---HHCccc---
Confidence 3444455555553 334 368999999999999999999999999999999 9999999999965 333322
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH----Hhc---
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC----CHL--- 172 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~----~~l--- 172 (580)
.++|+.++.++ ..+
T Consensus 103 -----------------------------------------------------------y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 103 -----------------------------------------------------------YQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp -----------------------------------------------------------CHHHHHHHHHHHHHHHHTTTC
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHHHhcccc
Confidence 24567778888 777
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
+++++++.++.+++.++ |.+-.+... + +.+
T Consensus 124 ~~~~~EL~~~~~~l~~~--------------------------------------pkny~aW~~--R----------~~v 153 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD--------------------------------------PKNHHVWSY--R----------KWL 153 (306)
T ss_dssp CCTHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H----------HHH
T ss_pred CCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHH--H----------HHH
Confidence 89999999999999773 444444333 3 778
Q ss_pred HHHcCCHH--HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 253 ALDAGLYS--EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR------IAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 253 ~~~~g~y~--eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~------~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.+.|+|+ ++++.++++|+. ++.+..+|++|+.+...+|+ +++++.+++++|.++|++..+|+.++.
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~-----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ 228 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDT-----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLG 228 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 88899998 999999999997 45589999999999999998 999999999999999999999999999
Q ss_pred HHHhcCChhHHHH-HHHHHH
Q 008039 325 LLETIRCLPDCLH-DLEHLK 343 (580)
Q Consensus 325 ~~~~lg~~~eAi~-~~~~al 343 (580)
++..+|+..+++. .+++++
T Consensus 229 ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTE
T ss_pred HHHhcCCChHHHHHHHHHHH
Confidence 9999999766554 444453
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=7e-14 Score=124.05 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------- 315 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------- 315 (580)
+...++.|+.+++.|+|++|+.+|+++|++ .|.++.+|+|+|.||..+|+|++|+.+|.++|+++|++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 344556699999999999999999999998 45588999999999999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|+++|.++..+|+|++|+..|++++.+
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999877
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-13 Score=141.60 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchH
Q 008039 62 ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSD 141 (580)
Q Consensus 62 ~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 141 (580)
++..+|..++..|+|++|+..|++++..++..++
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------------------------- 136 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD---------------------------------------------- 136 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC----------------------------------------------
Confidence 5677999999999999999999997733221110
Q ss_pred HHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCC
Q 008039 142 LKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPA 221 (580)
Q Consensus 142 ~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~ 221 (580)
+....+.++.+|.+|+.+|+++.|+..+++++.+.+..
T Consensus 137 -------------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~----------------------------- 174 (378)
T 3q15_A 137 -------------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH----------------------------- 174 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-----------------------------
T ss_pred -------------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-----------------------------
Confidence 01123468889999999999999999999999885320
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHH
Q 008039 222 TPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAE 300 (580)
Q Consensus 222 ~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~e 300 (580)
.+.....+..+... |..++..|+|++|+.+|.+++.+... ......+.+++|+|.+|..+|++++
T Consensus 175 ----~~~~~~~~~~~~~l----------g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 175 ----PLYSIRTIQSLFVI----------AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp ----TTCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ----CCchhhHHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 00011222223333 99999999999999999999997321 1233457899999999999999999
Q ss_pred HHHHHHHHHh-----cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 301 SIADCNKTLA-----LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 301 Al~~~~~Al~-----ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+..+.+++. .+|....+++.+|.++..+|++++|+..|++++++
T Consensus 241 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999 88999999999999999999999999999999988
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=130.55 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=131.2
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSG 98 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~ 98 (580)
|+..++.++..|..++ ..|++.+|+..|+++++++|+++.++..+|.+++.+|++++|+..|++++ ...| ++
T Consensus 2 ~~~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~---~~~p-~~- 73 (176)
T 2r5s_A 2 NASPDEQLLKQVSELL---QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP---LEYQ-DN- 73 (176)
T ss_dssp ----CTTHHHHHHHHH---HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC---GGGC-CH-
T ss_pred CCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh---hccC-Ch-
Confidence 5556677888898888 68999999999999999999999999999999999999999999999955 2222 11
Q ss_pred CCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHH-HhcCCHHH
Q 008039 99 SVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC-CHLGLMED 177 (580)
Q Consensus 99 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~-~~lG~~ee 177 (580)
..+..++.+. ...+...+
T Consensus 74 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 74 -------------------------------------------------------------SYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHTSCH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHhhcccch
Confidence 0122223332 22334456
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++++. |++..+...+ |..+...|
T Consensus 93 a~~~~~~al~~~--------------------------------------P~~~~~~~~l------------a~~~~~~g 122 (176)
T 2r5s_A 93 ELKRLEQELAAN--------------------------------------PDNFELACEL------------AVQYNQVG 122 (176)
T ss_dssp HHHHHHHHHHHS--------------------------------------TTCHHHHHHH------------HHHHHHTT
T ss_pred HHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHcc
Confidence 899999998773 5555544444 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
++++|+..|.+++.. +|. +....++.++|.++..+|++++|+..|.++|.
T Consensus 123 ~~~~A~~~~~~~l~~-~p~--~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 123 RDEEALELLWNILKV-NLG--AQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHHHTT-CTT--TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh-Ccc--cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999999997 332 22456899999999999999999999999885
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=117.90 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
..+...|+.++..|+|++|+..|+++|.+ .|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34455699999999999999999999997 3457899999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|++++|+..|++++++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999985
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=136.92 Aligned_cols=208 Identities=9% Similarity=-0.023 Sum_probs=148.9
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRL------ELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~------~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
.+.+....++..+-.++. ..|++.+|+..|.+++++.+.. ..++...|.+|..+|+|++|+..|++++....
T Consensus 30 ~~~~~A~~~~~~a~~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFK--NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp CCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 444455555555544332 5799999999999999997643 56889999999999999999999999773211
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
... +. ......+..+|.+|..
T Consensus 108 ~~g-~~----------------------------------------------------------~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 108 ENG-TP----------------------------------------------------------DTAAMALDRAGKLMEP 128 (307)
T ss_dssp TTT-CH----------------------------------------------------------HHHHHHHHHHHHHHTT
T ss_pred HcC-CH----------------------------------------------------------HHHHHHHHHHHHHHHc
Confidence 100 00 0012357789999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G 250 (580)
|++++|+.+|++++.+.+.. .+. .....+. ..|
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~-----------------------------------~~~~~~~~~~~----------~lg 162 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENE-----------------------------------ERLRQAAELIG----------KAS 162 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHH----------HHH
T ss_pred -CCHHHHHHHHHHHHHHHHhC-----------------------------------CChhHHHHHHH----------HHH
Confidence 99999999999999885420 011 1122222 339
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCC-CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-----HHHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAP-QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-----ALDTRAL 324 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~-~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-----A~~~ra~ 324 (580)
..+...|+|++|+.+|.+++.+.+... .+....++.++|.++..+|++++|+..|++++ ++|++.. .+..++.
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~ 241 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQ 241 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999732111 12234588999999999999999999999999 9997753 3445555
Q ss_pred HHHhcCChhH
Q 008039 325 LLETIRCLPD 334 (580)
Q Consensus 325 ~~~~lg~~~e 334 (580)
++ ..|+.+.
T Consensus 242 ~~-~~~d~~~ 250 (307)
T 2ifu_A 242 AY-DEQDEEQ 250 (307)
T ss_dssp HH-HTTCHHH
T ss_pred HH-HhcCHHH
Confidence 55 4555443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=134.10 Aligned_cols=170 Identities=17% Similarity=0.088 Sum_probs=141.0
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCC
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGS 99 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~ 99 (580)
|...+.++..|..++ ..|++.+|+..|.+++.++|+++.++..+|.+++.+|++++|+..|++++. ..|
T Consensus 114 p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p----- 182 (287)
T 3qou_A 114 PREEELXAQQAMQLM---QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQ----- 182 (287)
T ss_dssp CCHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGC-----
T ss_pred CCchhhHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhc-----
Confidence 445566777777777 689999999999999999999999999999999999999999999998551 211
Q ss_pred CCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHH
Q 008039 100 VSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAM 179 (580)
Q Consensus 100 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi 179 (580)
...+.++..+..+...|+.++|+
T Consensus 183 ---------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 183 ---------------------------------------------------------DTRYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp ---------------------------------------------------------SHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ---------------------------------------------------------chHHHHHHHHHHHHhhcccCccH
Confidence 01234566777888999999999
Q ss_pred HHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 180 VLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 180 ~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
..|++++.+. |++..+...+ |..+...|++
T Consensus 206 ~~l~~al~~~--------------------------------------P~~~~~~~~l------------a~~l~~~g~~ 235 (287)
T 3qou_A 206 QQLQQQVAEN--------------------------------------PEDAALATQL------------ALQLHQVGRN 235 (287)
T ss_dssp HHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHTTCH
T ss_pred HHHHHHHhcC--------------------------------------CccHHHHHHH------------HHHHHHcccH
Confidence 9999999873 6555555444 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
++|+..|.+++.. +|. .....++.+++.++..+|+.++|+..|.++|.
T Consensus 236 ~~A~~~l~~~l~~-~p~--~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRX-DLT--AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHH-CTT--GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-ccc--cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999997 343 12378999999999999999999999999986
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=119.30 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=88.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.++|.++|++..+|+.+|.+|..+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999997 4557899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 93 g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999999984
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-12 Score=131.65 Aligned_cols=206 Identities=8% Similarity=-0.075 Sum_probs=170.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHc---cChHHHHHHHHhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHS--EIASALSLLDAALALSPRLELALELKARSL----LYL---RRFKDVADMLQDY 86 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l----~~l---~r~~eAi~~~~~~ 86 (580)
+..||+..--+...+..+. ..| ++.++|..++.+|.++|.+..+|..|+.++ ..+ +++++++++|.++
T Consensus 60 L~~nP~~~taWn~R~~~L~---~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~ 136 (306)
T 3dra_A 60 INELASHYTIWIYRFNILK---NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM 136 (306)
T ss_dssp HHHCTTCHHHHHHHHHHHH---TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHHHHH---HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 3456666666777777765 456 999999999999999999999999999999 777 8999999999996
Q ss_pred hhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHH
Q 008039 87 IPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLG 166 (580)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG 166 (580)
+ ...|. ..++|+..+
T Consensus 137 l---~~~pk--------------------------------------------------------------ny~aW~~R~ 151 (306)
T 3dra_A 137 L---SSDPK--------------------------------------------------------------NHHVWSYRK 151 (306)
T ss_dssp H---HHCTT--------------------------------------------------------------CHHHHHHHH
T ss_pred H---HhCCC--------------------------------------------------------------CHHHHHHHH
Confidence 5 23221 134678889
Q ss_pred HHHHhcCCHH--HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLME--DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 167 ~a~~~lG~~e--eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
.++..+|.++ +++.+++++++++ |.+-.+....
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d--------------------------------------~~N~sAW~~R------- 186 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTD--------------------------------------LKNNSAWSHR------- 186 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred HHHHHhcccChHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH-------
Confidence 9999999998 9999999999773 4344443333
Q ss_pred HHHHHHHHHHHcCC------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH-HHHHHHHHHhcC---CC
Q 008039 245 RRRTAAIAALDAGL------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE-SIADCNKTLALE---PS 314 (580)
Q Consensus 245 ~~k~~G~~~~~~g~------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e-Al~~~~~Al~ld---P~ 314 (580)
+.++...|+ ++++++.++++|.. .|.+..+|++++.++.++|+..+ ....|.+++.++ |.
T Consensus 187 -----~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 187 -----FFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp -----HHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred -----HHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence 667777776 99999999999997 45689999999999999999666 556888888887 89
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008039 315 CIQALDTRALLLETIRCLPDCLHDLEHLKL 344 (580)
Q Consensus 315 ~~~A~~~ra~~~~~lg~~~eAi~~~~~al~ 344 (580)
++.++..+|.++.+.|++++|+..|+.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999965
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-13 Score=146.86 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=169.9
Q ss_pred hhhhHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----------hHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLRR----------FKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r----------~~eAi~~~~~~l 87 (580)
..+++..|...-..+++....|+ .++|++.++++|.++|.+..+|..|+.++..+++ |+++++.+++++
T Consensus 21 ~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l 100 (567)
T 1dce_A 21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH
Confidence 44567777655555554445555 4578999999999999999999999999999999 999999999966
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
+..| ..+++|+.+|.
T Consensus 101 ---~~~p--------------------------------------------------------------K~y~aW~hR~w 115 (567)
T 1dce_A 101 ---RVNP--------------------------------------------------------------KSYGTWHHRCW 115 (567)
T ss_dssp ---HHCT--------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---HhCC--------------------------------------------------------------CCHHHHHHHHH
Confidence 2222 12467888999
Q ss_pred HHHhcC--CHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 168 ACCHLG--LMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 168 a~~~lG--~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
++..+| ++++++.+++++++++ |.+-.+....
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d--------------------------------------~~N~~aW~~R-------- 149 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYR-------- 149 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH--------
T ss_pred HHHHcccccHHHHHHHHHHHHhhc--------------------------------------cccccHHHHH--------
Confidence 999999 7799999999999873 4444444443
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHh
Q 008039 246 RRTAAIAALDAG-LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS--------------GRIAESIADCNKTLA 310 (580)
Q Consensus 246 ~k~~G~~~~~~g-~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l--------------g~~~eAl~~~~~Al~ 310 (580)
|.++.+.| .++++++.++++|+. .|.+..+|++|+.++..+ +.++++++++.+||.
T Consensus 150 ----~~~l~~l~~~~~~el~~~~~~I~~-----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 150 ----RFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp ----HHHHHHTCCCHHHHHHHHHTTTTT-----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCChHHHHHHHHHHHHH-----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 88888889 999999999999997 456899999999999986 568999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhH------------HHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPD------------CLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~e------------Ai~~~~~al~l 345 (580)
++|++..+|+.++.++...+.+++ |+..|.+++.+
T Consensus 221 ~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~ 267 (567)
T 1dce_A 221 TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTV 267 (567)
T ss_dssp HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECT
T ss_pred hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceec
Confidence 999999999999999999999777 66667766554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=109.40 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=114.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--~- 41 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PRSAEAWYN--L- 41 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--------------------------------------CcchhHHHH--H-
Confidence 57789999999999999999999998762 333332222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++...|++++|+..+.+++..+|.+..+++
T Consensus 42 ---------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 107 (136)
T 2fo7_A 42 ---------GNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107 (136)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88999999999999999999997 3446788999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|.++...|++++|+..|++++++
T Consensus 108 ~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 108 NLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999999876
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=126.17 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=143.7
Q ss_pred hhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhh
Q 008039 20 RKIVDKYIRDARTLIATQEHSEIASALSLLDAALAL--------SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLK 91 (580)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l--------~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~ 91 (580)
+..+.-+...|..++ ..|++.+|+..|.+++.+ +|....++..+|.++..+|+|++|+..|++++...+
T Consensus 40 ~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 40 PDVATMLNILALVYR---DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 444555666666665 579999999999999988 477788999999999999999999999999774321
Q ss_pred hcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh
Q 008039 92 MANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH 171 (580)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~ 171 (580)
.. ..++ +......++.+|.+|+.
T Consensus 117 ~~-----------------------~~~~----------------------------------~~~~~~~~~~la~~~~~ 139 (283)
T 3edt_B 117 KV-----------------------LGKF----------------------------------HPDVAKQLNNLALLCQN 139 (283)
T ss_dssp HH-----------------------HCTT----------------------------------CHHHHHHHHHHHHHHHT
T ss_pred HH-----------------------cCCC----------------------------------ChHHHHHHHHHHHHHHH
Confidence 11 0010 11223468889999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHH
Q 008039 172 LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 172 lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~~~~~~ll~~~k~~~~~k~~G 250 (580)
+|++++|+..|++++.+..... .+ .......+... |
T Consensus 140 ~g~~~~A~~~~~~al~~~~~~~---------------------------------~~~~~~~~~~~~~l----------a 176 (283)
T 3edt_B 140 QGKAEEVEYYYRRALEIYATRL---------------------------------GPDDPNVAKTKNNL----------A 176 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHS---------------------------------CTTCHHHHHHHHHH----------H
T ss_pred cCCHHHHHHHHHHHHHHHHHhc---------------------------------CCCCHHHHHHHHHH----------H
Confidence 9999999999999998742200 01 11223333333 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCC--------------------------------------------CCCcccHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRG--------------------------------------------APQGFLAECYM 286 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~--------------------------------------------~~~~~~a~~~~ 286 (580)
..++..|+|++|+..|.+++.+... ...+....++.
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLR 256 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999999985110 12356778999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC
Q 008039 287 HRAFAYRSSGRIAESIADCNKTLALE 312 (580)
Q Consensus 287 nra~a~~~lg~~~eAl~~~~~Al~ld 312 (580)
++|.+|..+|++++|+..+.+++++.
T Consensus 257 ~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 257 SLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999863
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=145.14 Aligned_cols=132 Identities=14% Similarity=0.039 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++.+|++++|+..|++++++. |++..+...+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l-- 63 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH--------------------------------------PGHPEAVARL-- 63 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--------------------------------------TTCHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH--
Confidence 368889999999999999999999998762 5544444333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++++ .|.+..+++++|.++..+|++++|+..++++++++|++..++
T Consensus 64 ----------g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 128 (568)
T 2vsy_A 64 ----------GRVRWTQQRHAEAAVLLQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128 (568)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999997 345789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc---CChhHHHHHHHHHHHHH
Q 008039 320 DTRALLLETI---RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~ra~~~~~l---g~~~eAi~~~~~al~l~ 346 (580)
+.+|.++..+ |++++|+..|++++++.
T Consensus 129 ~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 129 AQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999999999 99999999999998873
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-12 Score=130.28 Aligned_cols=188 Identities=11% Similarity=0.047 Sum_probs=139.3
Q ss_pred CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcc
Q 008039 56 SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFK 135 (580)
Q Consensus 56 ~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 135 (580)
+|.....+..++..++..|+|++|++.+.+++. ..+...
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~---~~~~~~-------------------------------------- 109 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK---KEEYHP-------------------------------------- 109 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCCCCH--------------------------------------
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc---cccCCh--------------------------------------
Confidence 345556677889999999999999999998652 211000
Q ss_pred cccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCC
Q 008039 136 CFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNN 215 (580)
Q Consensus 136 ~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~ 215 (580)
+. . .....++.+|.++...|++++|+..|++++.+...
T Consensus 110 -----~~--~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------------------ 147 (293)
T 2qfc_A 110 -----EF--Q-----------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT------------------------ 147 (293)
T ss_dssp -----HH--H-----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC------------------------
T ss_pred -----hH--H-----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc------------------------
Confidence 00 0 00112456899999999999999999999865210
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHH
Q 008039 216 HQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR--RGAPQGFLAECYMHRAFAYR 293 (580)
Q Consensus 216 ~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~--~~~~~~~~a~~~~nra~a~~ 293 (580)
.......+..+... |..++..|+|++|+..|.+++.+. .+........+++|+|.+|.
T Consensus 148 ----------~~~~~~~~~~~~~l----------g~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 148 ----------GIDVYQNLYIENAI----------ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp ----------SSCTTHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------CCchHHHHHHHHHH----------HHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 00111222233333 999999999999999999999542 12211223379999999999
Q ss_pred HcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcCChhHH-HHHHHHHHHHH
Q 008039 294 SSGRIAESIADCNKTLALEPS------CIQALDTRALLLETIRCLPDC-LHDLEHLKLLY 346 (580)
Q Consensus 294 ~lg~~~eAl~~~~~Al~ldP~------~~~A~~~ra~~~~~lg~~~eA-i~~~~~al~l~ 346 (580)
.+|+|++|+..+++++.+.++ ...+++.+|.++..+|++++| ...|++++.+.
T Consensus 208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999999988643 278999999999999999999 77799999885
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=122.25 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.++.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.+|..+
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 99999999999999999999997 4558899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 103 g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 103 GELAEAESGLFLAQELI 119 (148)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC
Confidence 99999999999999984
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-12 Score=116.79 Aligned_cols=92 Identities=11% Similarity=0.051 Sum_probs=88.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.++.+|+++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~ 346 (580)
|++++|+..|++++++.
T Consensus 100 g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 100 GDLDGAESGFYSARALA 116 (142)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999884
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-12 Score=126.96 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=141.4
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHccChHHHHHHHHhhhhhhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE------LALELKARSLLYLRRFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~------~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~ 92 (580)
++..+..++..+..++ ..|++++|++.+.+++...|... ..+..+|.++...|+|++|+..|++++. .
T Consensus 71 ~~~~~~~l~~~~~~~~---~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~ 144 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN---Q 144 (293)
T ss_dssp HHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT---T
T ss_pred chhHHHHHHHHHHHHH---HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---H
Confidence 4556677788888777 68999999999999999988765 3456789999999999999999999662 2
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.+... +. ......|+.+|.+|+.+
T Consensus 145 ~~~~~---------------------------------~~-----------------------~~~~~~~~~lg~~y~~~ 168 (293)
T 2qfc_A 145 QLTGI---------------------------------DV-----------------------YQNLYIENAIANIYAEN 168 (293)
T ss_dssp CCCSS---------------------------------CT-----------------------THHHHHHHHHHHHHHHT
T ss_pred HhcCC---------------------------------ch-----------------------HHHHHHHHHHHHHHHHc
Confidence 11100 00 00123678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH--HHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE--SVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~--~~~~ll~~~k~~~~~k~~G 250 (580)
|++++|+..|++++.+... .|+.. .+..++.. |
T Consensus 169 ~~~~~A~~~~~kal~~~~~-----------------------------------~~~~~~~~~~~~~nl----------g 203 (293)
T 2qfc_A 169 GYLKKGIDLFEQILKQLEA-----------------------------------LHDNEEFDVKVRYNH----------A 203 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHH-----------------------------------SCCCHHHHHHHHHHH----------H
T ss_pred CCHHHHHHHHHHHHHHHHh-----------------------------------cCccccchHHHHHhH----------H
Confidence 9999999999999977421 12222 11233333 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAES-IADCNKTLAL 311 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eA-l~~~~~Al~l 311 (580)
..++..|+|++|+..|.+++.+.. .......+.+|+++|.+|..+|++++| ..++.+|+.+
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999999998732 122333588999999999999999999 7779999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=114.99 Aligned_cols=132 Identities=12% Similarity=0.119 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~--~ 53 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------------PSNAIYYGN--R 53 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHH--H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------------------CCChHHHHH--H
Confidence 467889999999999999999999999773 333333322 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|++..++
T Consensus 54 ----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 118 (166)
T 1a17_A 54 ----------SLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 118 (166)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999997 345788999999999999999999999999999999999998
Q ss_pred HH--HHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 320 DT--RALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 320 ~~--ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.. ++..+...|++++|+..++++..+.
T Consensus 119 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 119 MKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 44 5555889999999999999998875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=122.94 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++ +|. . ..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------------------------------------~~~-~--~~~~~l- 43 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------------------------------------DPH-S--RICFNI- 43 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------------------------------------SCC-H--HHHHHH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------------------------------------CCC-h--HHHHHH-
Confidence 57889999999999999999998753 121 1 223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---- 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---- 316 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+.+|.+++.+.|++.
T Consensus 44 ---------g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 109 (213)
T 1hh8_A 44 ---------GCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109 (213)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEEC
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHH
Confidence 99999999999999999999997 345789999999999999999999999999999888766
Q ss_pred ------------HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 ------------QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ------------~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++.+|.++..+|++++|+..|++++++
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 110 KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-12 Score=121.11 Aligned_cols=177 Identities=14% Similarity=0.005 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCC
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGD 122 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 122 (580)
.+|+..|.++.+. .++.++..+|.++...+++++|+..|++++.. +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------------------g-- 48 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------------------------G-- 48 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------------------------T--
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------------------------C--
Confidence 3578899999986 78999999999999999999999999996511 0
Q ss_pred CCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 123 SSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG----LMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG----~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
...+++.||.+|.. | ++++|+.+|+++...
T Consensus 49 -----------------------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---------- 82 (212)
T 3rjv_A 49 -----------------------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---------- 82 (212)
T ss_dssp -----------------------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------
T ss_pred -----------------------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------
Confidence 01367889999998 7 999999999998643
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD----AGLYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~ 274 (580)
.+..+...+ |..++. .+++.+|+..|.++++..
T Consensus 83 ------------------------------g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~- 119 (212)
T 3rjv_A 83 ------------------------------GSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDS- 119 (212)
T ss_dssp ------------------------------TCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSST-
T ss_pred ------------------------------CCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcC-
Confidence 223332222 888887 899999999999999962
Q ss_pred CCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLETI-R-----CLPDCLHDLEHLKL 344 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g-----~~~eAi~~~~~al~ 344 (580)
+ ....+.+++++|.+|.. .+++++|+.+|.+++++ |.++.+++.+|.+|... | ++++|+..|+++++
T Consensus 120 ~--~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 120 E--SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp T--SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred C--CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 1 00248899999999999 89999999999999999 78888999999999864 3 89999999999977
Q ss_pred H
Q 008039 345 L 345 (580)
Q Consensus 345 l 345 (580)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 6
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-12 Score=117.49 Aligned_cols=111 Identities=9% Similarity=-0.131 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....++.+|.+++.+|++++|+..|++++.++ |++..+...+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--------------------------------------P~~~~~~~~l 76 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--------------------------------------FYNVDYIMGL 76 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH
Confidence 34578899999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|+|++|+.+|.+++.+ .|.++.+|+++|.||..+|++++|+..|+++++++|+..
T Consensus 77 ------------g~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~- 138 (151)
T 3gyz_A 77 ------------AAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK- 138 (151)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-
T ss_pred ------------HHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH-
Confidence 99999999999999999999998 345788999999999999999999999999999999875
Q ss_pred HHHHHHHH
Q 008039 318 ALDTRALL 325 (580)
Q Consensus 318 A~~~ra~~ 325 (580)
+..++..
T Consensus 139 -~~~~A~~ 145 (151)
T 3gyz_A 139 -LKIKAQS 145 (151)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.8e-11 Score=124.45 Aligned_cols=214 Identities=11% Similarity=0.018 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLEL-----ALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~-----~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
++-.+..++ ..|++.+|+..+.+++.+.|.... ++..+|.+++..|+|++|+..+++++...+..+
T Consensus 17 ~~~~a~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------ 87 (373)
T 1hz4_A 17 NALRAQVAI---NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 87 (373)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------
Confidence 334454454 579999999999999999886532 678899999999999999999999763211100
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
+ .....+.++.+|.+++..|++++|+.
T Consensus 88 ------------------------------~-----------------------~~~~~~~~~~la~~~~~~G~~~~A~~ 114 (373)
T 1hz4_A 88 ------------------------------V-----------------------WHYALWSLIQQSEILFAQGFLQTAWE 114 (373)
T ss_dssp ------------------------------C-----------------------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------------------------c-----------------------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0 00112457789999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE-SESVSQLLSHIKLLLRRRTAAIAALDAGLY 259 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd-~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y 259 (580)
.|++++.+.+... ++. ......+... |..++..|++
T Consensus 115 ~~~~al~~~~~~~---------------------------------~~~~~~~~~~~~~l----------a~~~~~~g~~ 151 (373)
T 1hz4_A 115 TQEKAFQLINEQH---------------------------------LEQLPMHEFLVRIR----------AQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHHHTT---------------------------------CTTSTHHHHHHHHH----------HHHHHHTTCH
T ss_pred HHHHHHHHHHHhc---------------------------------cccCcHHHHHHHHH----------HHHHHHhcCH
Confidence 9999998853200 011 1222222223 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CcH-H--HH--HHHHHHHHhcCCh
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--SCI-Q--AL--DTRALLLETIRCL 332 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~~~-~--A~--~~ra~~~~~lg~~ 332 (580)
++|+.+|.+++.+.+....+....++.++|.++...|++++|+..+.+++.+.+ ++. . +. ..++.++...|++
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 999999999999743222333567899999999999999999999999998732 221 1 11 2355668899999
Q ss_pred hHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKL 344 (580)
Q Consensus 333 ~eAi~~~~~al~ 344 (580)
++|...+++++.
T Consensus 232 ~~A~~~~~~a~~ 243 (373)
T 1hz4_A 232 AAAANWLRHTAK 243 (373)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHhCCC
Confidence 999999998843
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.3e-12 Score=126.45 Aligned_cols=141 Identities=13% Similarity=0.072 Sum_probs=113.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHI 240 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~ 240 (580)
+..+|.++...|++++|+..|++++.+... .++. ..+..+...
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~l- 161 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLT-----------------------------------GIDVYQNLYIENAI- 161 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-----------------------------------CSCTTHHHHHHHHH-
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcc-----------------------------------cccHHHHHHHHHHH-
Confidence 445899999999999999999999975210 0111 222223333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR--GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--- 315 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--- 315 (580)
|.+++..|+|++|+.+|.+++.... +...+....+|+|+|.+|..+|+|++|+.+++++|.+.+..
T Consensus 162 ---------g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 162 ---------ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 9999999999999999999996421 12345567899999999999999999999999999986544
Q ss_pred ---HHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHH
Q 008039 316 ---IQALDTRALLLETIRC-LPDCLHDLEHLKLLYN 347 (580)
Q Consensus 316 ---~~A~~~ra~~~~~lg~-~~eAi~~~~~al~l~~ 347 (580)
..+++.+|.++..+|+ +++|+..|++++.+..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 8899999999999995 6999999999999853
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=129.98 Aligned_cols=194 Identities=10% Similarity=0.075 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....+...|..++ ..|++.+|+..|+++|.++|.++.++.++|.+++.+|+|++|+.+|++++ ++.|++
T Consensus 3 ~a~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~----- 71 (281)
T 2c2l_A 3 SAQELKEQGNRLF---VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQS----- 71 (281)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTC-----
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCC-----
Confidence 3556778888887 68999999999999999999999999999999999999999999999966 222211
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
...++.+|.+|..+|++++|+..
T Consensus 72 ---------------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 72 ---------------------------------------------------------VKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 13578899999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSE 261 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~e 261 (580)
|++++++.|.. ...+ . ..+...+.. .+...|..
T Consensus 95 ~~~al~l~p~~---------~~~~-----------------------~-~~~~~~~~~--------------~~~~~~~~ 127 (281)
T 2c2l_A 95 LQRAYSLAKEQ---------RLNF-----------------------G-DDIPSALRI--------------AKKKRWNS 127 (281)
T ss_dssp HHHHHHHHHHT---------TCCC-----------------------C-SHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHhCccc---------hhhH-----------------------H-HHHHHHHHH--------------HHHHHHHH
Confidence 99999987531 0000 0 111111111 11111111
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-CChhHHHHHHH
Q 008039 262 AIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI-RCLPDCLHDLE 340 (580)
Q Consensus 262 Ai~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l-g~~~eAi~~~~ 340 (580)
..... .+....+...++..+ .|++++|+..++++++++|++......++.++... +.+++|...|+
T Consensus 128 ------~~~~~-----~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 128 ------IEERR-----IHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp ------HHHTC-----CCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHH-----HhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 112334444444443 69999999999999999999998888888887776 67888888888
Q ss_pred HHH
Q 008039 341 HLK 343 (580)
Q Consensus 341 ~al 343 (580)
++.
T Consensus 195 ~a~ 197 (281)
T 2c2l_A 195 QVD 197 (281)
T ss_dssp HSS
T ss_pred hhh
Confidence 873
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-11 Score=125.37 Aligned_cols=205 Identities=15% Similarity=0.008 Sum_probs=154.8
Q ss_pred ChhhHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHh
Q 008039 38 EHSEIASALSLLDAALALS--------PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQL 109 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~--------P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 109 (580)
..|++.+|+..|.+++.+. |....++.++|.++..+|++++|+..+++++.. .+...
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~------------ 169 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV---LSSYQ------------ 169 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTTSC------------
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hhccC------------
Confidence 4689999999999999976 455677888999999999999999999996632 11000
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 008039 110 SRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 110 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~ 189 (580)
+......+..+|.++...|++++|+..|++++.+.
T Consensus 170 ---------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 170 ---------------------------------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp ---------------------------------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 00112357789999999999999999999998773
Q ss_pred HHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 190 TAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 190 ~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
.. ...+....... ....+..+...|++++|+..+.++
T Consensus 205 ~~-----------------------------------~~~~~~~~~~~--------~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 205 GN-----------------------------------GKYHSDWISNA--------NKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TT-----------------------------------SCCCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hc-----------------------------------cCcchhHHHHH--------HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 11 00111111110 111256678999999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS------CIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~------~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
+... +.........+.++|.++...|++++|+..+.+++.+.+. ...++..+|.++..+|++++|...|++++
T Consensus 242 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 242 AKPE-FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp CCCC-CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCC-CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8863 3222333557789999999999999999999999987542 23588999999999999999999999998
Q ss_pred HHH
Q 008039 344 LLY 346 (580)
Q Consensus 344 ~l~ 346 (580)
.+.
T Consensus 321 ~~~ 323 (373)
T 1hz4_A 321 KLA 323 (373)
T ss_dssp HHH
T ss_pred HHh
Confidence 884
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=117.32 Aligned_cols=137 Identities=11% Similarity=0.056 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
...+..+|.+++..|+|++|+..|+++++ +
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~--------------------------------------------- 35 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P--------------------------------------------- 35 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C---------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C---------------------------------------------
Confidence 44577899999999999999999988541 0
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
....|+.+|.+|+.+|++++|+..|++++.+.
T Consensus 36 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------------ 67 (213)
T 1hh8_A 36 ------------------HSRICFNIGCMYTILKNMTEAEKAFTRSINRD------------------------------ 67 (213)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------
T ss_pred ------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------
Confidence 01357889999999999999999999998772
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC------------CCcccHHHHHH
Q 008039 220 PATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA------------PQGFLAECYMH 287 (580)
Q Consensus 220 ~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~------------~~~~~a~~~~n 287 (580)
|+...+. +.. |..++..|+|++|+..|.+++.+. |. ..+....++++
T Consensus 68 --------~~~~~~~--~~l----------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (213)
T 1hh8_A 68 --------KHLAVAY--FQR----------GMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYN 126 (213)
T ss_dssp --------TTCHHHH--HHH----------HHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHH
T ss_pred --------ccchHHH--HHH----------HHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHH
Confidence 3333333 223 999999999999999999999963 32 12456699999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 288 RAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 288 ra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
+|.++..+|++++|+..+.+++.++|++
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999999999999987
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=108.46 Aligned_cols=114 Identities=13% Similarity=0.031 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|..++..|++++|+..|++++++. |++..+...+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~~--- 44 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------------------PEDARGYSNR--- 44 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------------------CCChHHHHHH---
Confidence 57889999999999999999999999873 4444333333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------CC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------PS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P~ 314 (580)
|.+++..|+|++|+..|.+++.+ .|.+..+|+++|.++..+|++++|+.++.+++.++ |+
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~ 110 (126)
T 3upv_A 45 ---------AAALAKLMSFPEAIADCNKAIEK-----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110 (126)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence 99999999999999999999998 34578999999999999999999999999999999 99
Q ss_pred cHHHHHHHHHHHHhc
Q 008039 315 CIQALDTRALLLETI 329 (580)
Q Consensus 315 ~~~A~~~ra~~~~~l 329 (580)
+..++..++.+...+
T Consensus 111 ~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 111 AREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=134.28 Aligned_cols=184 Identities=10% Similarity=-0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------ccChH-------HHHHHHHhhhhhhhhcCCCCCCCCCCchhhH
Q 008039 43 ASALSLLDAALALSPRLELALELKARSLLY-------LRRFK-------DVADMLQDYIPSLKMANDDSGSVSSDSSSQQ 108 (580)
Q Consensus 43 ~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~-------l~r~~-------eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 108 (580)
..|+..|+++|..+|.++.+|...|..+.. +|+++ +|+..|++++.. ..|+
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~--~~p~------------- 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--LLKK------------- 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT--TCSS-------------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH--hCcc-------------
Confidence 478899999999999999999999999997 79987 899999996621 1111
Q ss_pred hHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 109 LSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
....|+.+|.++...|++++|...|++++.+
T Consensus 320 -------------------------------------------------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 320 -------------------------------------------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred -------------------------------------------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 0125778899999999999999999999875
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008039 189 ATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFS 267 (580)
Q Consensus 189 ~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~ 267 (580)
. |.. ..+. ... |..+.+.|++++|+..|.
T Consensus 351 ~--------------------------------------p~~~~~~~--~~~----------~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 351 E--------------------------------------DIDPTLVY--IQY----------MKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp S--------------------------------------SSCHHHHH--HHH----------HHHHHHHHHHHHHHHHHH
T ss_pred c--------------------------------------ccCchHHH--HHH----------HHHHHHhcCHHHHHHHHH
Confidence 2 332 2222 222 777788899999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHH-HHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 268 KIVDGRRGAPQGFLAECYMHRAFA-YRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 268 ~AL~~~~~~~~~~~a~~~~nra~a-~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++. +| ....++...+.. +...|++++|+..|+++|+.+|+++..|...+.++..+|++++|...|++++..
T Consensus 381 ~Al~~-~~----~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 381 KARED-AR----TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHTC-TT----CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHhc-cC----CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99996 22 245556555544 457999999999999999999999999999999999999999999999999765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=107.21 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=89.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+.+|.+++.++|+++.+++.+|.++..+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999997 3457899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 330 g~~~eAi~~~~~al~l~~ 347 (580)
|++++|+..|++++++.+
T Consensus 91 ~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 91 ESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCh
Confidence 999999999999999853
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-11 Score=122.71 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=137.3
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLEL------ALELKARSLLYLRRFKDVADMLQDYIPSLKMAND 95 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~------~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~ 95 (580)
....+...+..++ ..|++.+|+..+++++...|..+. ++...|.++...++|++|+..|++++. ..+.
T Consensus 74 ~~~~l~~~i~~~~---~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~---~~~~ 147 (293)
T 3u3w_A 74 RKKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN---QQLT 147 (293)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH---TCCC
T ss_pred hHHHHHHHHHHHH---HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH---Hhcc
Confidence 4455556666666 689999999999999999887765 334578888888999999999999762 1111
Q ss_pred CCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCH
Q 008039 96 DSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLM 175 (580)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ 175 (580)
.. +.. .....+..+|.+|+.+|++
T Consensus 148 ~~---------------------------------~~~-----------------------~~~~~~~~lg~~y~~~g~~ 171 (293)
T 3u3w_A 148 GI---------------------------------DVY-----------------------QNLYIENAIANIYAENGYL 171 (293)
T ss_dssp CS---------------------------------CTT-----------------------HHHHHHHHHHHHHHHTTCH
T ss_pred cc---------------------------------cHH-----------------------HHHHHHHHHHHHHHHcCCH
Confidence 00 000 0012578899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD 255 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~ 255 (580)
++|+.+|++++++.... + ......+..++.. |..+++
T Consensus 172 ~~A~~~~~~al~~~~~~-------------------------------~--~~~~~~~~~~~nl----------g~~y~~ 208 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEAL-------------------------------H--DNEEFDVKVRYNH----------AKALYL 208 (293)
T ss_dssp HHHHHHHHHHHHHHHHS-------------------------------S--CCHHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-------------------------------c--cchhHHHHHHHHH----------HHHHHH
Confidence 99999999999874210 0 0011222334444 999999
Q ss_pred cCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 008039 256 AGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGR-IAESIADCNKTLAL 311 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~-~~eAl~~~~~Al~l 311 (580)
.|+|++|+..|.+++.+... ......+.+|+++|.++..+|+ +++|+.+|.+|+.+
T Consensus 209 ~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999999997321 2233458999999999999995 69999999999976
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=105.48 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |+...+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~-- 51 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--------------------------------------PANAVYFCN-- 51 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHH--
Confidence 4568889999999999999999999998762 333333222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
. |..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..+
T Consensus 52 ~----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 116 (131)
T 2vyi_A 52 R----------AAAYSKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116 (131)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred H----------HHHHHHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHH
Confidence 2 99999999999999999999997 34468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChh
Q 008039 319 LDTRALLLETIRCLP 333 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~ 333 (580)
+..+|.++..+|+++
T Consensus 117 ~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 117 KSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999999874
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.6e-12 Score=114.46 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....|+.+|.+++..|++++|+..|++++++. |++..+...+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l 51 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------------------------------------PANPIYLSNR 51 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CcCHHHHHHH
Confidence 34568889999999999999999999999873 4444443333
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|+|++|+..|.++|.+ .|.+..+|+++|.+|..+|++++|+.+|.+++.++|++..
T Consensus 52 ------------~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 52 ------------AAAYSASGQHEKAAEDAELATVV-----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred ------------HHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999998 3457899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 008039 318 ALDTRALLL 326 (580)
Q Consensus 318 A~~~ra~~~ 326 (580)
+++.++...
T Consensus 115 ~~~~~~l~~ 123 (164)
T 3sz7_A 115 DAMKRGLET 123 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-11 Score=131.69 Aligned_cols=190 Identities=11% Similarity=0.040 Sum_probs=153.9
Q ss_pred hhhHH-------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhH
Q 008039 39 HSEIA-------SALSLLDAALA-LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLS 110 (580)
Q Consensus 39 ~~d~~-------~Al~~~~~Al~-l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 110 (580)
.|+++ +|+..|++|+. ++|.+..+|...|.++..+|++++|...|++++. ..|.++
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~------------- 355 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDP------------- 355 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCH-------------
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCc-------------
Confidence 57766 89999999998 8999999999999999999999999999999662 222110
Q ss_pred HHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 008039 111 RERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLAT 190 (580)
Q Consensus 111 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~ 190 (580)
...|..+|.++...|++++|+..|+++++..
T Consensus 356 ------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~- 386 (530)
T 2ooe_A 356 ------------------------------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDA- 386 (530)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred ------------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 1257778999999999999999999998641
Q ss_pred HhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 008039 191 AAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI-AALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 191 ~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~-~~~~~g~y~eAi~~y~~A 269 (580)
|..... ++.. +. .+...|++++|+..|+++
T Consensus 387 -------------------------------------~~~~~~--~~~~----------a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 387 -------------------------------------RTRHHV--YVTA----------ALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp -------------------------------------TCCTHH--HHHH----------HHHHHHHTCCHHHHHHHHHHH
T ss_pred -------------------------------------CCchHH--HHHH----------HHHHHHHcCChhHHHHHHHHH
Confidence 211111 1111 22 234689999999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ----ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~----A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|+. .|.++.++.+.+..+..+|++++|...|++++...|.++. .|..........|+.+.+...++++++.
T Consensus 418 l~~-----~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 418 LKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHH-----HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHH-----CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 997 3457899999999999999999999999999998765543 7878888888999999999999999988
Q ss_pred HH
Q 008039 346 YN 347 (580)
Q Consensus 346 ~~ 347 (580)
++
T Consensus 493 ~p 494 (530)
T 2ooe_A 493 FR 494 (530)
T ss_dssp TH
T ss_pred Cc
Confidence 53
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=106.59 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=102.2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 157 EGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 157 ~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
.....|+.+|.+++..|++++|+..|++++.+ +|++..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------------------------------~~~~~~~~~~ 55 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------------------------------------NPKDAKLYSN 55 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------------------------------------CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------------CCCcHHHHHH
Confidence 34567889999999999999999999998865 2444333332
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
. |..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 56 --l----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 56 --R----------AACYTKLLEFQLALKDCEECIQL-----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp --H----------HHHHTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred --H----------HHHHHHhccHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 2 89999999999999999999997 344788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 008039 317 QALDTRALLLETIRC 331 (580)
Q Consensus 317 ~A~~~ra~~~~~lg~ 331 (580)
.++..++.++..+|+
T Consensus 119 ~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 119 EAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-12 Score=110.43 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.++.+|+++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=112.18 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|..++..|++++|+..|++++.+.+..... .+|........ ..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~------------------------------~~~~~~~~~~~--~~ 60 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR------------------------------EKPGEPEWVEL--DR 60 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT------------------------------SCTTSHHHHHH--HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc------------------------------CCCCHHHHHHH--HH
Confidence 57789999999999999999999999885321100 01111111000 00
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-HHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-QAL 319 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-~A~ 319 (580)
....-+...|.++++.|+|++|+..|+++|.+ .|.++.+|+++|.+|..+|++++|+.+|.+++.++|++. ...
T Consensus 61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKR-----EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 11122233499999999999999999999998 455899999999999999999999999999999999998 555
Q ss_pred HHHHHHHHhcC
Q 008039 320 DTRALLLETIR 330 (580)
Q Consensus 320 ~~ra~~~~~lg 330 (580)
..++.+...++
T Consensus 136 ~~l~~~~~~~~ 146 (162)
T 3rkv_A 136 REMKIVTERRA 146 (162)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-11 Score=113.22 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCccc-----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFL-----------AECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~-----------a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
......+...|+.++..|+|++|+..|.+++.+.+....... ..+++++|.++..+|+|++|+.+|.++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 334455666799999999999999999999997321111111 389999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=110.50 Aligned_cols=114 Identities=17% Similarity=0.017 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l- 58 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------------------------------------HYDARYFLGL- 58 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH-
Confidence 3467889999999999999999999999773 5544444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.+++..|+|++|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|++++.++|+++..
T Consensus 59 -----------g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 59 -----------GACRQSLGLYEQALQSYSYGALM-----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 99999999999999999999997 34577899999999999999999999999999999988766
Q ss_pred HHHHHHHHH
Q 008039 319 LDTRALLLE 327 (580)
Q Consensus 319 ~~~ra~~~~ 327 (580)
...+..+..
T Consensus 123 ~~~~~~~~~ 131 (142)
T 2xcb_A 123 EALAARAGA 131 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=121.58 Aligned_cols=186 Identities=10% Similarity=0.035 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc-ChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR-RFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~-r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
+.+..-+.++.. .+...+|+.+++++|.++|.+..+|..|+.++..++ .++++++.+..+| ..+|
T Consensus 55 ~~~~~~r~~~~~--~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L---~~nP--------- 120 (349)
T 3q7a_A 55 DAMDYFRAIAAK--EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA---VQNL--------- 120 (349)
T ss_dssp HHHHHHHHHHHT--TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HTTC---------
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HhCC---------
Confidence 333444555532 234568999999999999999999999999999999 5999999999865 2222
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc-C-CHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL-G-LMEDAMVL 181 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l-G-~~eeAi~~ 181 (580)
...++|+.++.++..+ + ++++++.+
T Consensus 121 -----------------------------------------------------Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 121 -----------------------------------------------------KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred -----------------------------------------------------CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 1235788889999988 8 99999999
Q ss_pred HHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-
Q 008039 182 LQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS- 260 (580)
Q Consensus 182 l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~- 260 (580)
+.+++.+ +|.+-.+.... +.++.+.|.++
T Consensus 148 ~~k~L~~--------------------------------------dpkNy~AW~~R------------~wvl~~l~~~~~ 177 (349)
T 3q7a_A 148 IHGSLLP--------------------------------------DPKNYHTWAYL------------HWLYSHFSTLGR 177 (349)
T ss_dssp HHHHTSS--------------------------------------CTTCHHHHHHH------------HHHHHHHHHTTC
T ss_pred HHHHHHh--------------------------------------CCCCHHHHHHH------------HHHHHHhccccc
Confidence 9998755 34444444433 55555555565
Q ss_pred -------HHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 261 -------EAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-------IAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 261 -------eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-------~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
++++.++++|+. ++.+..+|++|+.++..+++ ++++++++.++|.++|++..+|+.+..++
T Consensus 178 ~~~~~~~eELe~~~k~I~~-----dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV-----DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999997 45689999999999999997 79999999999999999999999988888
Q ss_pred HhcCCh
Q 008039 327 ETIRCL 332 (580)
Q Consensus 327 ~~lg~~ 332 (580)
...|.-
T Consensus 253 ~~~~~~ 258 (349)
T 3q7a_A 253 KHFSLP 258 (349)
T ss_dssp HHTTCC
T ss_pred HhcCCC
Confidence 887764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=106.20 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
..++..||.+++..|++++|+..|++++++. |+...+. ..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--------------------------------------p~~~~~~--~n 47 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD--------------------------------------PSNITFY--NN 47 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHH--HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHH--Hh
Confidence 4567889999999999999999999999873 5444433 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP---QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~---~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
+ |.+++..|+|++|+..|.++|++. |.. ....+.+|+++|.++..+|++++|+.+|.++|.++|+
T Consensus 48 l----------g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 48 K----------AAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred H----------HHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 3 999999999999999999999973 321 2234678999999999999999999999999999885
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=114.38 Aligned_cols=123 Identities=21% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
.++..|++++|+..|++++.+. |+...+...+
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l---------- 50 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN--------------------------------------PQNSEQWALL---------- 50 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC--------------------------------------CSCHHHHHHH----------
T ss_pred hhhhccCHHHHHHHHHHHHHhC--------------------------------------CCcHHHHHHH----------
Confidence 3567789999999999998762 4444444333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFA-YRSSGRI--AESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a-~~~lg~~--~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..++..|+|++|+..|.+++.+ .|.+..+++++|.+ +...|++ ++|+..+.+++.++|++..+++.+|.
T Consensus 51 --g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 123 (177)
T 2e2e_A 51 --GEYYLWQNDYSNSLLAYRQALQL-----RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123 (177)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHH-----HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999997 34478899999999 8899999 99999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|++++++
T Consensus 124 ~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 124 DAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHhh
Confidence 999999999999999999877
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=111.10 Aligned_cols=106 Identities=18% Similarity=0.043 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l- 61 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------------------------------------HYDSRFFLGL- 61 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------------------------------cccHHHHHHH-
Confidence 4467889999999999999999999999873 5444444333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
|.+++..|+|++|+..|.+++.+ .|.++.+++++|.++..+|++++|+..|.++++++|+++..
T Consensus 62 -----------g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 62 -----------GACRQAMGQYDLAIHSYSYGAVM-----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred -----------HHHHHHHhhHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999998 34477899999999999999999999999999999987654
Q ss_pred H
Q 008039 319 L 319 (580)
Q Consensus 319 ~ 319 (580)
.
T Consensus 126 ~ 126 (148)
T 2vgx_A 126 X 126 (148)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-10 Score=108.27 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..|++.+|+..+.......+....++..+|.+++.+|+|++|+..|++++...+..++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------- 61 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------------------- 61 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----------------------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC----------------------
Confidence 5789999999665555544478899999999999999999999999997743221100
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
.....+.++.+|.++..+|++++|+..|++++.+...
T Consensus 62 -------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------ 98 (203)
T 3gw4_A 62 -------------------------------------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS------ 98 (203)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred -------------------------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------
Confidence 0111346788999999999999999999999987431
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG 275 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~ 275 (580)
.+ +. .....+... |..++..|+|++|+..|.+++.+...
T Consensus 99 -----------------------------~~~~~~~~~~~~~~l----------g~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 99 -----------------------------LPEDPLAASANAYEV----------ATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp -----------------------------SCCCHHHHHHHHHHH----------HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------cCccHHHHHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 01 11 222223333 88888888888888888888875211
Q ss_pred -CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 276 -APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 276 -~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
......+.++.++|.++..+|++++|+..+.+++.+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 111223445566666666666666666666666655
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-11 Score=124.22 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------GFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
....+...|+.+++.|+|++|+..|.++|.+. |... +....+|+|+|.||..+|+|++|+.+|+++|.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666999999999999999999999983 3310 11268999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 311 LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 311 ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++|+++.+|+++|.+|..+|+|++|+.+|++++++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-11 Score=110.90 Aligned_cols=143 Identities=14% Similarity=0.088 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
+.++.+|.+++..|++++|+.+|++++.+... ..........+...
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------------~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQK----------------------------------SGDHTAEHRALHQV 72 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------------------TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH----------------------------------cCCcHHHHHHHHHH
Confidence 46788999999999999999999999987421 00111222333333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-Cc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--Cc
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP-QG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--SC 315 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~-~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--~~ 315 (580)
|..++..|+|++|+..|.+++.+..... .+ ....+++++|.++..+|++++|+..+.+++.+.+ .+
T Consensus 73 ----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 142 (203)
T 3gw4_A 73 ----------GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142 (203)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999732111 22 4678899999999999999999999999997632 12
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 316 ----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 316 ----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..++..+|.++..+|++++|+..|++++++.
T Consensus 143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4457899999999999999999999999985
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-11 Score=130.30 Aligned_cols=140 Identities=13% Similarity=0.020 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
.+.|+.+|.+++..|++++|+..|++++++.+... . . ....... .
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~----------~---------------------~--~~~~~~~--~ 312 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEY----------G---------------------L--SEKESKA--S 312 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC----------S---------------------C--CHHHHHH--H
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc----------c---------------------C--ChHHHHH--H
Confidence 35688899999999999999999999998853200 0 0 0011000 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
.......+...|.++++.|+|++|+.+|+++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.++++++|++..+
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 1112334455699999999999999999999998 34589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHHHH
Q 008039 319 LDTRALLLETIRCLPDCLHD 338 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~ 338 (580)
+..++.++..++++++|...
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-11 Score=124.72 Aligned_cols=216 Identities=9% Similarity=0.035 Sum_probs=165.8
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLE-----------------LALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~-----------------~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
-+.+|+.++ ..|+|.+|++.|.+++...|... .++..+|.+|..+|+|++|++.+.++++
T Consensus 7 ~l~~a~~l~---~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 7 KLEEARRLV---NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467888888 68999999999999999998753 4688899999999999999999999663
Q ss_pred hhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHH
Q 008039 89 SLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQA 168 (580)
Q Consensus 89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a 168 (580)
.....+ +..... -....+|.+
T Consensus 84 ~~~~~~------------------------------------------------~~~~~~-----------~~~~~l~~~ 104 (434)
T 4b4t_Q 84 YMMQFA------------------------------------------------KSKTVK-----------VLKTLIEKF 104 (434)
T ss_dssp HHHTSC------------------------------------------------HHHHHH-----------HHHHHHHHH
T ss_pred HHHHcc------------------------------------------------chHHHH-----------HHHHHHHHH
Confidence 321100 000000 134567888
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
+...|+++.|+.++++++.+..... + .+....+ ....
T Consensus 105 ~~~~~~~~~a~~~~~~~~~~~~~~~---------~-----------------------~~~~~~~--~~~l--------- 141 (434)
T 4b4t_Q 105 EQVPDSLDDQIFVCEKSIEFAKREK---------R-----------------------VFLKHSL--SIKL--------- 141 (434)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHHHSS---------C-----------------------CSSHHHH--HHHH---------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHhC---------c-----------------------cHHHHHH--HHHH---------
Confidence 9999999999999999998754210 0 1122222 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---Cc----HHHHH
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---SC----IQALD 320 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---~~----~~A~~ 320 (580)
|..++..|+|.+|+..+.+++.... ..+.+....++.+.|.+|..+|+|+.|...+++++.+.+ +. ...+.
T Consensus 142 -a~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 142 -ATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred -HHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 9999999999999999999987532 233566788999999999999999999999999998742 21 35677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
..|.++...++|++|..+|..+++.+.
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 889999999999999999999988753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=98.82 Aligned_cols=99 Identities=26% Similarity=0.305 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--l- 75 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PRSAEAWYN--L- 75 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------------------------------------CCchHHHHH--H-
Confidence 46677888888888888888888887652 222222222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~ 314 (580)
|..++..|++++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+
T Consensus 76 ---------~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 76 ---------GNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp ---------HHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 77888889999999999988886 2335778888999999999999999999999988886
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-11 Score=130.93 Aligned_cols=104 Identities=17% Similarity=0.266 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP-----------QGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~-----------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.....++..|+.+++.|+|.+|+..|.++|.+. |.. .+....+|+|+|.||+++|+|++|+.+|+++|
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344556677999999999999999999999973 331 11227899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 345 ~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 345 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999877
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-11 Score=110.57 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..++.+|..++.+|++++|+..|++++++.|.. .+ ...+ +........+.++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~---------~~-----------------~~a~--~~~~~~a~a~~n~ 63 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTM---------PP-----------------EEAF--DHAGFDAFCHAGL 63 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---------CT-----------------TSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---------cc-----------------hhhh--hhccchHHHHHHH
Confidence 357889999999999999999999999996420 00 0000 0111122233444
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCCCCcccHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR--RGAPQGFLAECY----MHRAFAYRSSGRIAESIADCNKTLALEP 313 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~--~~~~~~~~a~~~----~nra~a~~~lg~~~eAl~~~~~Al~ldP 313 (580)
|.++.+.|+|++|+..|+++|++- ...-.|..+.+| +|+|.++..+|++++|+.+|+++|+++|
T Consensus 64 ----------g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 64 ----------AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999960 000023478889 9999999999999999999999999999
Q ss_pred CcHHH
Q 008039 314 SCIQA 318 (580)
Q Consensus 314 ~~~~A 318 (580)
++...
T Consensus 134 ~d~~~ 138 (159)
T 2hr2_A 134 ERKGE 138 (159)
T ss_dssp HCCSC
T ss_pred CcHHH
Confidence 87543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.2e-11 Score=124.35 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC-----------CCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGA-----------PQGFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~-----------~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
.+.....++..|+.+++.|+|++|+..|+++|.+.+.. ..+....+|+|+|.||.++|+|++|+.+|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34456667888999999999999999999999831000 1456789999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|+++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-10 Score=115.14 Aligned_cols=210 Identities=11% Similarity=0.110 Sum_probs=157.3
Q ss_pred ccchhhhHHHHHHHHHHHHHhhC-------hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC--hHHHHHHHHhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQE-------HSEIASALSLLDAALALSPRLELALELKARSLLYLRR--FKDVADMLQDY 86 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~-------~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r--~~eAi~~~~~~ 86 (580)
+..||+...-|......+..... ...+.+++.+++.+|..+|.+..+|..|+.++..+++ +++++++|.++
T Consensus 57 L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 136 (331)
T 3dss_A 57 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARF 136 (331)
T ss_dssp HTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence 34566666666666655542111 1227899999999999999999999999999999995 89999999996
Q ss_pred hhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHH
Q 008039 87 IPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLG 166 (580)
Q Consensus 87 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG 166 (580)
+ +..|.+ ..+|...+
T Consensus 137 l---~~dprN--------------------------------------------------------------y~AW~~R~ 151 (331)
T 3dss_A 137 L---EADERN--------------------------------------------------------------FHCWDYRR 151 (331)
T ss_dssp H---HHCTTC--------------------------------------------------------------HHHHHHHH
T ss_pred H---HhCCCC--------------------------------------------------------------HHHHHHHH
Confidence 5 332221 13567789
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGL-MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 167 ~a~~~lG~-~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
.++..+|. +++++.++.+++.++ |.+..+....
T Consensus 152 ~vl~~l~~~~~eel~~~~~~I~~~--------------------------------------p~N~SAW~~R-------- 185 (331)
T 3dss_A 152 FVAAQAAVAPAEELAFTDSLITRN--------------------------------------FSNYSSWHYR-------- 185 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHC--------------------------------------SCCHHHHHHH--------
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH--------
Confidence 99999999 599999999999773 5555554443
Q ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhccCCCCCcccHHHHH-HHHHHHHHcC----------ChHH
Q 008039 246 RRTAAIAALDA--------------GLYSEAIRHFSKIVDGRRGAPQGFLAECYM-HRAFAYRSSG----------RIAE 300 (580)
Q Consensus 246 ~k~~G~~~~~~--------------g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~-nra~a~~~lg----------~~~e 300 (580)
+..+... +.++++++++.++|.. .|.+..+|+ .++......| .+++
T Consensus 186 ----~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 186 ----SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp ----HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred ----HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 4444443 5689999999999997 445778886 5555554444 5889
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH---hcCChhHHHHHHHHHHHH
Q 008039 301 SIADCNKTLALEPSCIQALDTRALLLE---TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 301 Al~~~~~Al~ldP~~~~A~~~ra~~~~---~lg~~~eAi~~~~~al~l 345 (580)
++..|.++|+++|++..++...+.+.. ..+..++....|.+++++
T Consensus 257 el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 257 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 999999999999999777666665433 467888999999999988
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=8e-10 Score=119.70 Aligned_cols=231 Identities=10% Similarity=-0.050 Sum_probs=159.6
Q ss_pred hHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCCC
Q 008039 22 IVDKYIRDARTLIATQ-EHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
...-+...+..+.... ..+++.+|+..|.++++. .++.++..+|.++.. .+++++|+..|++++.. . +
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~--~ 254 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---G--N 254 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---T--C
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C--C
Confidence 3455666676665211 168999999999999986 467889999999997 89999999999996621 0 0
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL---- 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l---- 172 (580)
. .+...+ ..++..+. +... +.. +.+.-+.+.........++.||.+|...
T Consensus 255 ~------~a~~~l----g~~y~~g~-----~~~~----------d~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 255 S------IAQFRL----GYILEQGL-----AGAK----------EPL-KALEWYRKSAEQGNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp H------HHHHHH----HHHHHHTT-----TSSC----------CHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTB
T ss_pred H------HHHHHH----HHHHHCCC-----CCCC----------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Confidence 0 000000 00110000 0000 000 1111111111112234667788888887
Q ss_pred -CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 -GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAI 251 (580)
Q Consensus 173 -G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~ 251 (580)
+++++|+.+|+++.+.. +..+. +.. |.
T Consensus 309 ~~~~~~A~~~~~~a~~~~----------------------------------------~~~a~--~~l----------g~ 336 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQG----------------------------------------DATAQ--ANL----------GA 336 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----------------------------------------CHHHH--HHH----------HH
T ss_pred cCCHHHHHHHHHHHHhcC----------------------------------------CHHHH--HHH----------HH
Confidence 88888888888877541 12222 222 88
Q ss_pred HHHHcC---CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 252 AALDAG---LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 252 ~~~~~g---~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.++..| ++++|+.+|.++++.. ++.+++++|.+|.. .+++++|+..|.++++. .++.+++++|.
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~ 407 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKG-------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGE 407 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 888866 8999999999999962 67899999999999 89999999999999986 47999999999
Q ss_pred HHHh----cCChhHHHHHHHHHHHHH
Q 008039 325 LLET----IRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 325 ~~~~----lg~~~eAi~~~~~al~l~ 346 (580)
+|.. .+++++|+..|++++++.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 9998 899999999999998873
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-10 Score=103.98 Aligned_cols=143 Identities=15% Similarity=0.047 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh-HHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTES-ESVSQLL 237 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~-~~~~~ll 237 (580)
.+.++.+|.+++..|++++|+..|++++.+.+.. ++. ..+..+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----------------------------------~~~~~~~~~~~ 53 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-----------------------------------GDKAAERIAYS 53 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----------------------------------CCchHHHHHHH
Confidence 3568889999999999999999999999885420 111 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP--- 313 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP--- 313 (580)
..|..++..|+|++|+..|.+++.+.+. ...+....+++++|.++..+|++++|+..+.+++.+.+
T Consensus 54 ----------~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 123 (164)
T 3ro3_A 54 ----------NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123 (164)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 2399999999999999999999987321 12233477899999999999999999999999998732
Q ss_pred ---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 314 ---SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 314 ---~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
....++..+|.++..+|++++|+..|++++++.
T Consensus 124 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 336789999999999999999999999999884
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=112.86 Aligned_cols=143 Identities=13% Similarity=0.051 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHH-HHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESV-SQLLS 238 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~-~~ll~ 238 (580)
..++.+|.+++..|++++|+..|++++.+.+. +|+.... ..-..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~ 83 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-----------------------------------TEEWDDQILLDKK 83 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-----------------------------------CTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-----------------------------------ccccchhhHHHHH
Confidence 35778999999999999999999999987421 0110000 00000
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
.......+...|.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+.+|.+++.++|++..+
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 0001223344599999999999999999999997 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChhHHH-HHHHHH
Q 008039 319 LDTRALLLETIRCLPDCL-HDLEHL 342 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi-~~~~~a 342 (580)
+..++.++..++++.++. ..|.+.
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 159 RNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988887 445544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-10 Score=96.88 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.++.+|.+++..|++++|+..|++++.+. |++..+... .
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--~- 44 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------------------PHNHVLYSN--R- 44 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H-
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--------------------------------------CCcHHHHHH--H-
Confidence 57788999999999999999999988762 333333222 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++.
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 45 ---------SAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ---------HHHHHhhccHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 88999999999999999999997 3447889999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 321 TRALLLE 327 (580)
Q Consensus 321 ~ra~~~~ 327 (580)
.++.+..
T Consensus 111 ~l~~~~~ 117 (118)
T 1elw_A 111 GLQNMEA 117 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8888753
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-10 Score=101.42 Aligned_cols=91 Identities=21% Similarity=0.374 Sum_probs=87.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.+++.++|++..+++.+|.++..+
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999997 3447899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 98 ~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 98 KDYTKAMDVYQKALDL 113 (133)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999887
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.6e-12 Score=129.17 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccH-----------------HHHHHHHHHHHHcCChHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLA-----------------ECYMHRAFAYRSSGRIAES 301 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a-----------------~~~~nra~a~~~lg~~~eA 301 (580)
.+.....++..|+.+++.|+|.+|+..|.++|.+. |... .+|+|+|.||.++|+|++|
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44556778888999999999999999999999972 2233 4899999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 302 IADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 302 l~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|+++|.++|++.++|+++|.+|..+|+|++|+.+|++++++
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=97.32 Aligned_cols=116 Identities=22% Similarity=0.223 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+. |+...+... .
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------~~~~~~~~~--l 49 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--------------------------------------PNNAEAWYN--L 49 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHH--H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------cCcHHHHHH--H
Confidence 467889999999999999999999998762 333333222 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|++..++
T Consensus 50 ----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (125)
T 1na0_A 50 ----------GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114 (125)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------HHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence 88999999999999999999997 344678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 008039 320 DTRALLLETIR 330 (580)
Q Consensus 320 ~~ra~~~~~lg 330 (580)
..+|.++...|
T Consensus 115 ~~l~~~~~~~g 125 (125)
T 1na0_A 115 QNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcc
Confidence 99999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-09 Score=118.82 Aligned_cols=230 Identities=9% Similarity=-0.052 Sum_probs=153.9
Q ss_pred hHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----ccChHHHHHHHHhhhhhhhhcCCC
Q 008039 22 IVDKYIRDARTLIATQ-EHSEIASALSLLDAALALSPRLELALELKARSLLY----LRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~-~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~----l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
..+-++..+..++... ..+++..|+..|.++++. .++.++..+|.+|.. .+++++|+..|++++.. .+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-----GL 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TC
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CC
Confidence 4555666666665211 168999999999999987 678999999999999 99999999999996621 00
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh----c
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH----L 172 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~----l 172 (580)
+. +.- . -..++..+. +...+ .. +.+.-+.+..+.....+++.||.+|.. .
T Consensus 111 ~~------a~~---~-Lg~~y~~g~-----g~~~~----------~~-~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 111 PQ------AQQ---N-LGVMYHEGN-----GVKVD----------KA-ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp HH------HHH---H-HHHHHHHTS-----SSCCC----------HH-HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HH------HHH---H-HHHHHHcCC-----CCCCC----------HH-HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 00 000 0 000000000 00000 00 001111111111234456666766666 6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 008039 173 GLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA 252 (580)
Q Consensus 173 G~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~ 252 (580)
+++++|+.+|+++.+. .+..+. ...|..
T Consensus 165 ~d~~~A~~~~~~a~~~----------------------------------------~~~~a~------------~~Lg~~ 192 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ----------------------------------------GNVWSC------------NQLGYM 192 (490)
T ss_dssp CCHHHHHHHHHHHHHT----------------------------------------TCHHHH------------HHHHHH
T ss_pred CCHHHHHHHHHHHHHC----------------------------------------CCHHHH------------HHHHHH
Confidence 6677777777666532 112222 222888
Q ss_pred HHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 253 ALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 253 ~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.. .+++++|+..|.++++.. ++.+++++|.+|.. .+++++|+..+.+++.. .++.+++.+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~-------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG-------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 888 899999999999999852 56789999999997 89999999999999876 67899999999
Q ss_pred HHHh----cCChhHHHHHHHHHHHH
Q 008039 325 LLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~----lg~~~eAi~~~~~al~l 345 (580)
++.. .+++++|+..|+++++.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999 99999999999999654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=102.09 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=87.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+. |. .+....+++++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 112 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLD-AT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL 112 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSC-CC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHc-cc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence 999999999999999999999972 32 1123899999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 113 ~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 113 GRLDQAVLDLQRCVSL 128 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-10 Score=99.57 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---IQALDTRAL 324 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---~~A~~~ra~ 324 (580)
..|..++..|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..|.+++..+|++ +.+++.+|.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL-YPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH-CCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3499999999999999999999996 343 34455899999999999999999999999999999999 999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|+++++.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999887
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.5e-11 Score=99.22 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS--CIQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~--~~~A~~~ra~~~~ 327 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|+ +..+++.+|.++.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQL-----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 99999999999999999999997 3447889999999999999999999999999999999 9999999999999
Q ss_pred hc-CChhHHHHHHHHHHHH
Q 008039 328 TI-RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 328 ~l-g~~~eAi~~~~~al~l 345 (580)
.+ |++++|+..|++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 99 9999999999999655
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=117.79 Aligned_cols=97 Identities=16% Similarity=0.263 Sum_probs=91.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
+...|+.++..|+|++|+..|+++|.. .|.+..+|+++|.+|..+|++++|+.+|++++.++|++..+++.+|.+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344499999999999999999999997 455889999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l~~ 347 (580)
|..+|++++|+..|++++++.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999853
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=98.03 Aligned_cols=96 Identities=20% Similarity=0.234 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 245 RRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 245 ~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
.+...|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|++..+++.+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3444599999999999999999999997 34478899999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
++..+|++++|+..|++++++
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999999766
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=9.5e-11 Score=102.83 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.+|.+++..|++++|+..|++++++. |++..+...+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------P~~~~a~~~l---- 57 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE--------------------------------------PEREEAWRSL---- 57 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH----
Confidence 6788999999999999999999999873 5555554444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.+++..|++++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..++++++++|++..
T Consensus 58 --------g~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 58 --------GLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999999998 3457889999999999999999999999999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=101.66 Aligned_cols=114 Identities=9% Similarity=-0.042 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...|+.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------~~~~~~~~~l- 49 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------------------PLVAVYYTNR- 49 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------------------------------------cCcHHHHHHH-
Confidence 3468889999999999999999999999873 4444433333
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPS---- 314 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~---- 314 (580)
|.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..|.+++.++|+
T Consensus 50 -----------~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 113 (137)
T 3q49_B 50 -----------ALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113 (137)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred -----------HHHHHHhcCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence 99999999999999999999997 3457899999999999999999999999999999988
Q ss_pred -cHHHHHHHHHHHH
Q 008039 315 -CIQALDTRALLLE 327 (580)
Q Consensus 315 -~~~A~~~ra~~~~ 327 (580)
+......+..+..
T Consensus 114 ~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 114 FGDDIPSALRIAKK 127 (137)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 5555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-10 Score=102.78 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
....+...|..++..|+|++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|+++.+++.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 86 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3445556699999999999999999999997 34578999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++..+|++++|+..|++++++
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999999888
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-10 Score=99.61 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQL 236 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~l 236 (580)
....++.+|.+++..|++++|+..|++++++ +|++.. ...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------------------------------------~~~~~~~~~~~ 68 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--------------------------------------DATPQDQAVLH 68 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--------------------------------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--------------------------------------cccchHHHHHH
Confidence 3456788999999999999999999999865 244311 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 237 LSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
+.. |..++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 69 ~~~----------a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 69 RNR----------AACHLKLEDYDKAETEASKAIEK-----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHH----------HHHHHHTTCHHHHHHHHHHHHHH-----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHH----------HHHHHHHccHHHHHHHHHHHHhh-----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 333 99999999999999999999997 344789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 008039 317 QALDTRALLLET 328 (580)
Q Consensus 317 ~A~~~ra~~~~~ 328 (580)
.++..++.+...
T Consensus 134 ~~~~~l~~~~~~ 145 (148)
T 2dba_A 134 VFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHCS
T ss_pred HHHHHHHHHHhh
Confidence 999988887654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.5e-11 Score=108.42 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+|+..|++++|+..|++++.+. |++..+...+
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l-- 84 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR--------------------------------------GENAELYAAL-- 84 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------------------CSCHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------------------CCCHHHHHHH--
Confidence 467889999999999999999999999874 4443333332
Q ss_pred HHHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH
Q 008039 240 IKLLLRRRTAAIA-ALDAGLY--SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 240 ~k~~~~~k~~G~~-~~~~g~y--~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|.. ++..|+| ++|+..|.+++.. .|.+..+++++|.++..+|++++|+..+.+++.++|++.
T Consensus 85 ----------a~~l~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 85 ----------ATVLYYQASQHMTAQTRAMIDKALAL-----DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp ----------HHHHHHHTTTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred ----------HHHHHHhcCCcchHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 888 7899999 9999999999997 345789999999999999999999999999999999976
Q ss_pred HH
Q 008039 317 QA 318 (580)
Q Consensus 317 ~A 318 (580)
..
T Consensus 150 ~~ 151 (177)
T 2e2e_A 150 NR 151 (177)
T ss_dssp CH
T ss_pred cH
Confidence 54
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.6e-10 Score=96.07 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHI 240 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~ 240 (580)
++.+|.+++..|++++|+..|++++... |++.. ...++..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------------------------------p~~~~~~~~~~~l- 45 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--------------------------------------PNGVYTPNALYWL- 45 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------SSSTTHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--------------------------------------CCCcccHHHHHHH-
Confidence 6778999999999999999999998763 32221 1222223
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.+++..|+|++|+..|.+++.. .|. .+....+++++|.++..+|++++|+..+++++..+|++..+..
T Consensus 46 ---------g~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 46 ---------GESYYATRNFQLAEAQFRDLVSR-YPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-CTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHHH-CCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999999999999999997 333 2334889999999999999999999999999999999998877
Q ss_pred HHHHHHHhcCC
Q 008039 321 TRALLLETIRC 331 (580)
Q Consensus 321 ~ra~~~~~lg~ 331 (580)
.+..+....++
T Consensus 115 a~~~l~~l~~~ 125 (129)
T 2xev_A 115 AQERLQSIRLG 125 (129)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHhh
Confidence 77666554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-09 Score=128.56 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=126.3
Q ss_pred CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccc
Q 008039 57 PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKC 136 (580)
Q Consensus 57 P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 136 (580)
..++.+|..+|.++...|++++|++.|.++ +|
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD---------------------------------------- 1133 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DD---------------------------------------- 1133 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CC----------------------------------------
Confidence 567888888888888888888888888761 11
Q ss_pred ccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCC
Q 008039 137 FSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNH 216 (580)
Q Consensus 137 ~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~ 216 (580)
...|+.+|.++..+|++++|+++|+.+++..+. ........+.+..++
T Consensus 1134 ----------------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-----~~Idt~LafaYAKl~----- 1181 (1630)
T 1xi4_A 1134 ----------------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-----SYVETELIFALAKTN----- 1181 (1630)
T ss_pred ----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-----ccccHHHHHHHHhhc-----
Confidence 125778999999999999999999998865311 000000001000000
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC
Q 008039 217 QTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG 296 (580)
Q Consensus 217 ~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg 296 (580)
.......+.... .......-|..++..|+|++|+.+|.++- -|..++.++.++|
T Consensus 1182 ------------rleele~fI~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1182 ------------RLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS-------------NFGRLASTLVHLG 1235 (1630)
T ss_pred ------------CHHHHHHHHhCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh-------------HHHHHHHHHHHhC
Confidence 000011111000 01122345999999999999999999862 4788999999999
Q ss_pred ChHHHHHHHHHHHhcCC-------------------------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 297 RIAESIADCNKTLALEP-------------------------SCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 297 ~~~eAl~~~~~Al~ldP-------------------------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++++|++.+.+|...++ .+++-+..++..|...|.|++|+..|++++.+
T Consensus 1236 e~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1236 EYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 99999999999855543 24455667788899999999999999999766
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-10 Score=95.68 Aligned_cols=92 Identities=17% Similarity=0.313 Sum_probs=87.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..+.+++.++|+++.+++.+|.++..
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 399999999999999999999997 344688999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|++++++
T Consensus 93 ~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALEL 109 (131)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc
Confidence 99999999999999887
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-11 Score=102.35 Aligned_cols=92 Identities=16% Similarity=0.284 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc------HHHH
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC------IQAL 319 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~------~~A~ 319 (580)
+...|..++..|+|++|+..|++++.+ .|.+..+++++|.++..+|++++|+.+|++++.++|++ ..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-----QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 344499999999999999999999997 34578999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+.+|.++..+|++++|+..|+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 99999999999999988776654
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-12 Score=104.11 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=50.8
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVM 470 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~ 470 (580)
.++|++|||.++++..+|++|||++++++||||+++... .+.|+..|+.|++||++|.
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~-----------------~~~A~~~F~~i~eAyevL~ 90 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPY-----------------EQYAKMIFMELNDAWSEFE 90 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchh-----------------HhHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999875321 1468899999999999764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=116.68 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=140.4
Q ss_pred chhhhHHHHHHH-------HHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHH---------------------HHHHH
Q 008039 18 SNRKIVDKYIRD-------ARTLIATQEHSEIASALSLLDAALALSPRLELALE---------------------LKARS 69 (580)
Q Consensus 18 ~~~~~~~~~~~~-------~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~---------------------~rA~~ 69 (580)
.+|.-.+-|+.. +..+. ..+++.+++..+.+++++.|+.-.+++ ..|.+
T Consensus 35 ~dP~~~Daw~g~~a~g~~~~~~L~---~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 35 YDESACDAWIGRIRCGDTDRVTLF---RAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAAC 111 (282)
T ss_dssp HCTTCHHHHHHHHHTTCCCHHHHH---HHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHH
T ss_pred hChhhhHHHHhHHHccCCcHHHHH---HHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHH
Confidence 467777778777 55555 567788999999999999886654444 48999
Q ss_pred HHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHh
Q 008039 70 LLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAG 149 (580)
Q Consensus 70 l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 149 (580)
|...|+|++|.+.|+..+. ..
T Consensus 112 L~~~g~y~eA~~~l~~~~~---~~-------------------------------------------------------- 132 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPV---AG-------------------------------------------------------- 132 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCC---TT--------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHHHh---cC--------------------------------------------------------
Confidence 9999999999999887431 00
Q ss_pred hhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 150 LCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 150 l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.... ..|.+|.+++..|++++|+..|+.+... |+
T Consensus 133 ------p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~---------------------------------------~d 166 (282)
T 4f3v_A 133 ------SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW---------------------------------------PD 166 (282)
T ss_dssp ------CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC---------------------------------------SC
T ss_pred ------CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc---------------------------------------CC
Confidence 0112 5678999999999999999999865432 22
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc-cHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 230 SE-SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF-LAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 230 ~~-~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~-~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
+. .....+.. |.++...|++++|+..|.+++.. +. .|. ...+++++|.|+.++|+.++|+..+++
T Consensus 167 ~~~~~~a~~~L----------G~al~~LG~~~eAl~~l~~a~~g--~~-~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 167 KFLAGAAGVAH----------GVAAANLALFTEAERRLTEANDS--PA-GEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHTS--TT-TTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHH----------HHHHHHCCCHHHHHHHHHHHhcC--CC-CccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 11122223 99999999999999999999974 21 133 667999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHH
Q 008039 308 TLALEPSCIQALDTR 322 (580)
Q Consensus 308 Al~ldP~~~~A~~~r 322 (580)
++..+|+ ..++..+
T Consensus 234 a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 234 LQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHSCC-HHHHHHH
T ss_pred HHhcCCc-HHHHHHH
Confidence 9999999 7766554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-10 Score=119.13 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|..+|.+++..|++++|+..|++++++.+... .. ... ...... +......+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--~~-----~~~---------------~~~~~~--~~~~~~~~--- 276 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--AA-----AED---------------ADGAKL--QPVALSCV--- 276 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--HH-----SCH---------------HHHGGG--HHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--cc-----cCh---------------HHHHHH--HHHHHHHH---
Confidence 3578899999999999999999999998643210 00 000 000000 11122222
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
...|.++++.|+|++|+.+|+++|++ .|.++.+|+++|.+|..+|++++|+.++.++++++|++..++
T Consensus 277 -------~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~ 344 (370)
T 1ihg_A 277 -------LNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ 344 (370)
T ss_dssp -------HHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -------HHHHHHHHhccCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 33399999999999999999999997 345899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHH
Q 008039 320 DTRALLLETIRCLPDCLH 337 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~ 337 (580)
..++.++..+++++++..
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887754
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.9e-11 Score=96.46 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=55.4
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... ..+...|+.|++||++| ++
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------------------~~a~~~f~~i~~Ay~~L-~d 65 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-------------------EEAERRFKQVAEAYEVL-SD 65 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTH-------------------HHHHHHHHHHHHHHHHH-SS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-------------------HHHHHHHHHHHHHHHHH-CC
Confidence 45679999999999999999999999999999999976521 46788999999999965 55
Q ss_pred hhhHHHH
Q 008039 473 IMDEEAA 479 (580)
Q Consensus 473 ~~~~~~~ 479 (580)
+..+..+
T Consensus 66 ~~~R~~Y 72 (82)
T 2ej7_A 66 AKKRDIY 72 (82)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 6544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.1e-10 Score=96.24 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------HHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC-------IQAL 319 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~-------~~A~ 319 (580)
...|..++..|+|++|+..|.+++.. .|....+++++|.++..+|++++|+..|.+++.++|++ ..++
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34499999999999999999999997 34478999999999999999999999999999999887 9999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|.++..+|++++|+..|++++++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999887
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=94.45 Aligned_cols=63 Identities=29% Similarity=0.512 Sum_probs=53.2
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++.. ..+...|+.|++||++ ++++
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~-L~d~ 62 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---------------------PGATEAFKAIGTAYAV-LSNP 62 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---------------------HHHHHHHHHHHHHHHH-HTSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-HCCH
Confidence 46789999999999999999999999999999999764 3567889999999995 4555
Q ss_pred hhHHH
Q 008039 474 MDEEA 478 (580)
Q Consensus 474 ~~~~~ 478 (580)
..+..
T Consensus 63 ~~R~~ 67 (78)
T 2ctp_A 63 EKRKQ 67 (78)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 53333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-10 Score=101.20 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=79.0
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~e 334 (580)
..|+|++|+.+|.++|.+. + ..|....+++++|.++..+|++++|+..|.++++++|+++.+++.+|.++..+|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-L-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSC-C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcC-C-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHH
Confidence 3689999999999999972 1 1356889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008039 335 CLHDLEHLKLLY 346 (580)
Q Consensus 335 Ai~~~~~al~l~ 346 (580)
|+..|++++++.
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999998883
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-10 Score=95.42 Aligned_cols=119 Identities=15% Similarity=0.146 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++.+. |+...+.. ..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~--~l- 44 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD--------------------------------------PTNMTYIT--NQ- 44 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHH--HH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------------------CccHHHHH--HH-
Confidence 57889999999999999999999999762 33333322 22
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP---QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~---~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|..++..|+|++|+..|.+++.+. |.. .+....+++++|.++..+|++++|+..+.+++.++| +..
T Consensus 45 ---------a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 113 (131)
T 1elr_A 45 ---------AAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPD 113 (131)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHH
Confidence 999999999999999999999973 211 111178999999999999999999999999999999 688
Q ss_pred HHHHHHHHHHhcCC
Q 008039 318 ALDTRALLLETIRC 331 (580)
Q Consensus 318 A~~~ra~~~~~lg~ 331 (580)
.+..++.++..+++
T Consensus 114 ~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 114 VLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888766543
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=96.82 Aligned_cols=59 Identities=22% Similarity=0.432 Sum_probs=52.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++.. ..+...|+.|++||++|.+ +
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~~L~d-~ 62 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---------------------PDAEAKFREIAEAYETLSD-A 62 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---------------------HHHHHHHHHHHHHHHHHHS-S
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hHHHHHHHHHHHHHHHHCC-H
Confidence 46789999999999999999999999999999999763 4678899999999996555 5
Q ss_pred h
Q 008039 474 M 474 (580)
Q Consensus 474 ~ 474 (580)
.
T Consensus 63 ~ 63 (88)
T 2ctr_A 63 N 63 (88)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=121.35 Aligned_cols=148 Identities=13% Similarity=0.022 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++.+.+..... ............
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------------------------~~~~~~~~~~~~ 227 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF--------------------------------QLYGKYQDMALA 227 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH--------------------------------TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh--------------------------------hhcccHHHHHHH
Confidence 457889999999999999999999999874321000 000111110100
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+ ....+...|.++++.|+|++|+.+|.++|.+ .|.+..+|+++|.+|..+|++++|+.+|.++++++|++..++
T Consensus 228 l-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 228 V-KNPCHLNIAACLIKLKRYDEAIGHCNIVLTE-----EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp H-HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 0 1123445699999999999999999999997 345889999999999999999999999999999999999999
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHHHHH
Q 008039 320 DTRALL-LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 320 ~~ra~~-~~~lg~~~eAi~~~~~al~l 345 (580)
..++.+ ....+..+.+...|.+++.+
T Consensus 302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999998 44567788888999998766
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=97.69 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=58.0
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++.... +..+..+...|+.|++||++ +++
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~--------------~~~~~~~~~~f~~i~~Ay~~-L~d 77 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVP--------------AGTMEECMQKFIEIDQAWKI-LGN 77 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCC--------------HHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCC--------------hhhhHHHHHHHHHHHHHHHH-HCC
Confidence 346799999999999999999999999999999999764211 12346789999999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 78 ~~~R~~YD 85 (94)
T 1wjz_A 78 EETKKKYD 85 (94)
T ss_dssp SSHHHHHH
T ss_pred HHHHHHHH
Confidence 65444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-11 Score=130.24 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|+.+|.+++..|++++|+..|++++++. |+...+...+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--------------------------------------p~~~~~~~~l--- 46 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------------PSNAIYYGNR--- 46 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------------------------------CccHHHHHHH---
Confidence 45678999999999999999999999873 4444443333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|..+++.|+|++|+..|++++++ .|..+.+++++|.+|..+|++++|+..++++++++|++..++.
T Consensus 47 ---------g~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 112 (477)
T 1wao_1 47 ---------SLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112 (477)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHH
T ss_pred ---------HHHHHHhcCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999997 4557899999999999999999999999999999999999999
Q ss_pred HHHHH--HHhcCChhHHHHHHH
Q 008039 321 TRALL--LETIRCLPDCLHDLE 340 (580)
Q Consensus 321 ~ra~~--~~~lg~~~eAi~~~~ 340 (580)
.++.+ +...|+|++|+..|+
T Consensus 113 ~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 113 KYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 99998 889999999999999
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-11 Score=99.06 Aligned_cols=59 Identities=17% Similarity=0.080 Sum_probs=51.6
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
...++|++|||..+++..+|+++||+++++||||+++... ..+.+.|+.|++||++|.+
T Consensus 14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~-------------------~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-------------------DIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-------------------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCch-------------------HHHHHHHHHHHHHHHHHHh
Confidence 3457999999999999999999999999999999976532 4678899999999997655
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=94.62 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=53.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... .+...|+.|++||++| ++
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~--------------------~a~~~f~~i~~Ay~~L-~d 62 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP--------------------KAKEKFSQLAEAYEVL-SD 62 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT--------------------THHHHHHHHHHHHHHH-HS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH--------------------HHHHHHHHHHHHHHHH-CC
Confidence 34678999999999999999999999999999999976532 4678899999999965 44
Q ss_pred hhhHH
Q 008039 473 IMDEE 477 (580)
Q Consensus 473 ~~~~~ 477 (580)
+..+.
T Consensus 63 ~~~R~ 67 (79)
T 2dn9_A 63 EVKRK 67 (79)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55333
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=98.54 Aligned_cols=67 Identities=12% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||+++++||||++... ..+.+.|+.|++||++ +++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~-L~d 72 (99)
T 2yua_A 14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS--------------------AEAAERFTRISQAYVV-LGS 72 (99)
T ss_dssp SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC--------------------SHHHHHHHHHHHHHHH-TTS
T ss_pred CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------HHHHHHHHHHHHHHHH-HCC
Confidence 3567899999999999999999999999999999998642 2467889999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 73 ~~~R~~YD 80 (99)
T 2yua_A 73 ATLRRKYD 80 (99)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444444
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.9e-11 Score=99.31 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=49.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+|||.++++..+|+++||++++++||||+.. ..+.+.|+.|++||++|.+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~d 81 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---------------------PGSEDAFKAVVNARTALLK 81 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---------------------TTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHHHCC
Confidence 5799999999999999999999999999999999865 2456779999999997655
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-10 Score=94.42 Aligned_cols=62 Identities=32% Similarity=0.456 Sum_probs=52.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||.+|||.++++..+|+++|+++++++|||+++. ..+...|+.|++||++ ++++..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---------------------~~~~~~f~~i~~Ay~~-L~d~~~ 60 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---------------------PGAEEKFKEIAEAYDV-LSDPRK 60 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---------------------TTHHHHHHHHHHHHHH-TTCHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------ccHHHHHHHHHHHHHH-HCCHHH
Confidence 589999999999999999999999999999999764 2456789999999995 555654
Q ss_pred HHHH
Q 008039 476 EEAA 479 (580)
Q Consensus 476 ~~~~ 479 (580)
+..+
T Consensus 61 R~~Y 64 (77)
T 1hdj_A 61 REIF 64 (77)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-09 Score=108.39 Aligned_cols=180 Identities=11% Similarity=-0.019 Sum_probs=138.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCC
Q 008039 45 ALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSS 124 (580)
Q Consensus 45 Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 124 (580)
|+..|++.++..+.+...+...|.++...|++++|+..|.+.|.. .|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~---~~------------------------------ 131 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN---DE------------------------------ 131 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---SC------------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CC------------------------------
Confidence 677788888887777778889999999999999999999996511 10
Q ss_pred CCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCC
Q 008039 125 DDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDS 204 (580)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~ 204 (580)
+......+..+++++..+|+.+.|.+.+++..+..
T Consensus 132 ------------------------------~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~--------------- 166 (310)
T 3mv2_B 132 ------------------------------AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI--------------- 166 (310)
T ss_dssp ------------------------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------
T ss_pred ------------------------------CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 00112356678999999999999999999887652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCC
Q 008039 205 FPFSKFPVSNNHQTPPATPPRTMTE----SESVSQLLSHIKLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQ 278 (580)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~dPd----~~~~~~ll~~~k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~ 278 (580)
|| .......+.. |.+.+..| ++.+|+..|+++.+. .
T Consensus 167 -----------------------~d~~~~~d~~l~~Lae----------a~v~l~~g~~~~q~A~~~f~El~~~-----~ 208 (310)
T 3mv2_B 167 -----------------------EDTVSGDNEMILNLAE----------SYIKFATNKETATSNFYYYEELSQT-----F 208 (310)
T ss_dssp -----------------------CHHHHHHHHHHHHHHH----------HHHHHHHTCSTTTHHHHHHHHHHTT-----S
T ss_pred -----------------------ccccccchHHHHHHHH----------HHHHHHhCCccHHHHHHHHHHHHHh-----C
Confidence 32 1223223322 54455555 999999999998774 2
Q ss_pred cc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GF--LAECYMHRAFAYRSSGRIAESIADCNKTLAL----------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~--~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l----------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|. ...+++| |++.+|+|++|..+++.++++ +|+++.++.++..+...+|+ +|.+.++++.++
T Consensus 209 p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 209 PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 32 3456666 899999999999999988887 59999999999999999998 888999999777
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-09 Score=95.59 Aligned_cols=151 Identities=17% Similarity=0.086 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
..++..+|.+++..|+|++|+..+++++...+..++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------------------------- 44 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------------------------- 44 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--------------------------------------------
Confidence 467889999999999999999999997733211000
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
.....+.++.+|.+++.+|++++|+.+|++++.+.+..
T Consensus 45 ---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--------------------------- 82 (164)
T 3ro3_A 45 ---------------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--------------------------- 82 (164)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------
T ss_pred ---------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------------------------
Confidence 00112367889999999999999999999999885320
Q ss_pred CCCCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-CCCcccHHHHHHHHHHHHHcCC
Q 008039 220 PATPPRTMTES-ESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-APQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 220 ~~~~~~~dPd~-~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-~~~~~~a~~~~nra~a~~~lg~ 297 (580)
++. .....+. ..|..++..|+|++|+..|.+++.+... ...+....++.++|.++..+|+
T Consensus 83 --------~~~~~~~~~~~----------~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 83 --------KDRAVEAQSCY----------SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 144 (164)
T ss_dssp --------TCHHHHHHHHH----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------CCcHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC
Confidence 111 1122222 2399999999999999999999986321 2234457889999999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 008039 298 IAESIADCNKTLALEPS 314 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~ 314 (580)
+++|+..+.+++.+...
T Consensus 145 ~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 145 HDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987543
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=96.97 Aligned_cols=67 Identities=22% Similarity=0.407 Sum_probs=55.0
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++... ..+++.|+.|++||++|. +
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-------------------~~a~~~f~~i~~Ay~~L~-d 65 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNK-------------------EEAEKKFKLVSEAYEVLS-D 65 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCS-------------------HHHHHHHHHHHHHHHHHH-S
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccH-------------------HHHHHHHHHHHHHHHHHC-C
Confidence 34678999999999999999999999999999999976532 467889999999999654 4
Q ss_pred hhhHHHH
Q 008039 473 IMDEEAA 479 (580)
Q Consensus 473 ~~~~~~~ 479 (580)
+..+..+
T Consensus 66 ~~~R~~Y 72 (92)
T 2dmx_A 66 SKKRSLY 72 (92)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5433333
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=96.26 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=53.2
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||++.. ..+.+.|+.|++||++|. +
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------------------~~~~~~f~~i~~Ay~~L~-d 71 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---------------------PGAEDRFIQISKAYEILS-N 71 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---------------------TTHHHHHHHHHHHHHHHH-S
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---------------------hhHHHHHHHHHHHHHHHC-C
Confidence 346799999999999999999999999999999999765 245678999999999654 4
Q ss_pred hhhHHH
Q 008039 473 IMDEEA 478 (580)
Q Consensus 473 ~~~~~~ 478 (580)
+..+..
T Consensus 72 ~~~R~~ 77 (88)
T 2cug_A 72 EEKRTN 77 (88)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 553333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=107.68 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=79.7
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI----------AESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~----------~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+.+.|++|+..|.+++++ .|.++.+|+|+|.++..++++ ++|+..|++||+++|++..+|+++|.
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 567889999999999998 455899999999999999886 49999999999999999999999999
Q ss_pred HHHhcC-----------ChhHHHHHHHHHHHH
Q 008039 325 LLETIR-----------CLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg-----------~~~eAi~~~~~al~l 345 (580)
+|..+| +|++|+..|++|+++
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 999985 899999999999998
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.6e-09 Score=111.47 Aligned_cols=123 Identities=19% Similarity=0.074 Sum_probs=91.9
Q ss_pred hHHHHHHHH-H--HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHH
Q 008039 160 WRYLVLGQA-C--CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQL 236 (580)
Q Consensus 160 ~~~~~LG~a-~--~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~l 236 (580)
.+++.||.+ + ...|++++|+.+|+++.+. ++..+.
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----------------------------------------g~~~A~-- 286 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----------------------------------------DQPRAE-- 286 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----------------------------------------TCHHHH--
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----------------------------------------CCHHHH--
Confidence 367778887 4 4678899999999887743 122222
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHH
Q 008039 237 LSHIKLLLRRRTAAIAALDAG-----LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNK 307 (580)
Q Consensus 237 l~~~k~~~~~k~~G~~~~~~g-----~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~ 307 (580)
+.. |..++ .| ++.+|+..|.+++ .. ++.+++++|.+|.. ..++++|+.+|.+
T Consensus 287 ~~L----------g~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 287 LLL----------GKLYY-EGKWVPADAKAAEAHFEKAV-GR-------EVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHH----------HHHHH-HCSSSCCCHHHHHHHHHTTT-TT-------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHH----------HHHHH-cCCCCCCCHHHHHHHHHHHh-CC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 222 77776 55 8999999999888 31 67888899988887 3488999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
+.+ +.++.+.+++|.+|.. ..++++|+..|+++.+.
T Consensus 348 Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 348 AAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 876 4678888999998875 56888899888888543
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.9e-10 Score=96.80 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=54.7
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.+||.+|||.++++..+|+++|+++++++|||+++... ..+...|+.|++||++| +++..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~-------------------~~a~~~f~~I~~AY~vL-~d~~~ 61 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNK-------------------EFAEKKFKEVAEAYEVL-SDKHK 61 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCC-------------------HHHHHHHHHHHHHHHHH-HSHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccH-------------------HHHHHHHHHHHHHHHHH-CCHHH
Confidence 47999999999999999999999999999999976532 46788999999999965 55654
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+..
T Consensus 62 R~~YD~ 67 (99)
T 2lgw_A 62 REIYDR 67 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=99.34 Aligned_cols=70 Identities=21% Similarity=0.271 Sum_probs=57.1
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||++++++|||+++.. ..+...|+.|++||++ +++
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~v-L~d 75 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPEN--------------------PKAVETFQKLQKAKEI-LTN 75 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTC--------------------STHHHHHHHHHHHHHH-HHS
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HCC
Confidence 4468999999999999999999999999999999998642 2467889999999995 555
Q ss_pred hhhHHHHHHHH
Q 008039 473 IMDEEAAEKRR 483 (580)
Q Consensus 473 ~~~~~~~~~~~ 483 (580)
+..+..+...+
T Consensus 76 ~~~R~~YD~~~ 86 (112)
T 2ctq_A 76 EESRARYDHWR 86 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 66555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-09 Score=90.46 Aligned_cols=101 Identities=15% Similarity=0.130 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
+.|+.+|.+++..|++++|+..|++++++. |+...+.. ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~~~~~~--~~ 46 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------------------------------------PEESKYWL--MK 46 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHH--HH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------------------------------------cCCHHHHH--HH
Confidence 356789999999999999999999999772 33333332 22
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcc--cHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCc
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGF--LAECYMHRAFAYRSS-GRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~--~a~~~~nra~a~~~l-g~~~eAl~~~~~Al~ldP~~ 315 (580)
|..++..|+|++|+..|.+++.. .|. ...+++++|.++..+ |++++|+.++.+++..+|+.
T Consensus 47 ----------a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 47 ----------GKALYNLERYEEAVDCYNYVINV-----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHT-----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred ----------HHHHHHccCHHHHHHHHHHHHHh-----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999999999999999997 344 788999999999999 99999999999999999975
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.2e-09 Score=108.87 Aligned_cols=205 Identities=8% Similarity=-0.090 Sum_probs=156.2
Q ss_pred ccchhhhHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-c-ChHHHHHHHHhhhhhhhh
Q 008039 16 WLSNRKIVDKYIRDARTLIATQEHS-EIASALSLLDAALALSPRLELALELKARSLLYL-R-RFKDVADMLQDYIPSLKM 92 (580)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l-~-r~~eAi~~~~~~l~~l~~ 92 (580)
+..||+...-+...+..+. ..| ++.+++..++.+|.++|.+..+|..|+.++..+ + +++++++.|.+++ ..
T Consensus 81 L~~nP~~ytaWn~R~~iL~---~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L---~~ 154 (349)
T 3q7a_A 81 VRMNPAHYTVWQYRFSLLT---SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL---LP 154 (349)
T ss_dssp HHHCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT---SS
T ss_pred HHhCchhHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH---Hh
Confidence 3456666666666666665 345 599999999999999999999999999999998 8 9999999999955 22
Q ss_pred cCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc
Q 008039 93 ANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL 172 (580)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l 172 (580)
.|. ...+|..++.++..+
T Consensus 155 dpk--------------------------------------------------------------Ny~AW~~R~wvl~~l 172 (349)
T 3q7a_A 155 DPK--------------------------------------------------------------NYHTWAYLHWLYSHF 172 (349)
T ss_dssp CTT--------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred CCC--------------------------------------------------------------CHHHHHHHHHHHHHh
Confidence 221 124577788888888
Q ss_pred CCHH--------HHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 173 GLME--------DAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 173 G~~e--------eAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
|.++ +++++++++++++ |.+-.+....
T Consensus 173 ~~~~~~~~~~~~eELe~~~k~I~~d--------------------------------------p~N~SAW~~R------- 207 (349)
T 3q7a_A 173 STLGRISEAQWGSELDWCNEMLRVD--------------------------------------GRNNSAWGWR------- 207 (349)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH-------
T ss_pred ccccccchhhHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHHH-------
Confidence 8887 9999999998763 4444444433
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCCh-------------------
Q 008039 245 RRRTAAIAALDAGL-------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRI------------------- 298 (580)
Q Consensus 245 ~~k~~G~~~~~~g~-------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~------------------- 298 (580)
+.++.+.++ ++++++.++++|.+ .|.+..+|+++..++...|+.
T Consensus 208 -----~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 208 -----WYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -----HHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -----HHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 777777776 89999999999997 455889999988888887764
Q ss_pred -HHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 299 -AESIADCNKTLALE------PSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 299 -~eAl~~~~~Al~ld------P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.+-...|...+... +.++.|+..++.+|...|+.++|+..|+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44555555555443 6789999999999999999999999999874
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.8e-10 Score=90.51 Aligned_cols=60 Identities=22% Similarity=0.435 Sum_probs=50.1
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||++++. ...|+.|++||++ ++++
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-----------------------~~~f~~i~~Ay~~-L~d~ 61 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-----------------------AEQFKQISQAYEV-LSDE 61 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-----------------------HHHHHHHHHHHHH-HTSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-----------------------HHHHHHHHHHHHH-HCCH
Confidence 356899999999999999999999999999999997541 3569999999995 4555
Q ss_pred hhHH
Q 008039 474 MDEE 477 (580)
Q Consensus 474 ~~~~ 477 (580)
..+.
T Consensus 62 ~~R~ 65 (73)
T 2och_A 62 KKRQ 65 (73)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=97.28 Aligned_cols=183 Identities=11% Similarity=0.016 Sum_probs=139.8
Q ss_pred ccccchh--hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc----ChHHHHHHHHhhh
Q 008039 14 HWWLSNR--KIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLR----RFKDVADMLQDYI 87 (580)
Q Consensus 14 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~----r~~eAi~~~~~~l 87 (580)
.||.... ....-+...+..++ ..+|+.+|+..|.++++. .++.++..+|.+|.. + ++++|+..|++++
T Consensus 7 ~~~~~aa~~g~~~a~~~lg~~~~---~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 7 SQYQQQAEAGDRRAQYYLADTWV---SSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4544332 24555667777776 478999999999999876 688999999999998 7 8999999999964
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
.. + ...+++.||.
T Consensus 81 ~~------------------------------g-------------------------------------~~~a~~~Lg~ 93 (212)
T 3rjv_A 81 EA------------------------------G-------------------------------------SKSGEIVLAR 93 (212)
T ss_dssp HT------------------------------T-------------------------------------CHHHHHHHHH
T ss_pred HC------------------------------C-------------------------------------CHHHHHHHHH
Confidence 11 0 0136788999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 008039 168 ACCH----LGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLL 243 (580)
Q Consensus 168 a~~~----lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~ 243 (580)
+|.. .+++++|+.+|+++.++. |.......++..
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~--------------------------------------~~~~~~~a~~~L---- 131 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDS--------------------------------------ESDAAVDAQMLL---- 131 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSST--------------------------------------TSHHHHHHHHHH----
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcC--------------------------------------CCcchHHHHHHH----
Confidence 9988 899999999999987541 211223333333
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 008039 244 LRRRTAAIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS-G-----RIAESIADCNKTLALEP 313 (580)
Q Consensus 244 ~~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l-g-----~~~eAl~~~~~Al~ldP 313 (580)
|..+.. .+++++|+..|.++++. + .++.+++++|.+|... | ++++|+.+|.+|++.
T Consensus 132 ------g~~y~~g~g~~~d~~~A~~~~~~A~~~--~----~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~-- 197 (212)
T 3rjv_A 132 ------GLIYASGVHGPEDDVKASEYFKGSSSL--S----RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE-- 197 (212)
T ss_dssp ------HHHHHHTSSSSCCHHHHHHHHHHHHHT--S----CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--
T ss_pred ------HHHHHcCCCCCCCHHHHHHHHHHHHHc--C----CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--
Confidence 999999 89999999999999996 2 1456899999999875 3 899999999999988
Q ss_pred CcHHHHHHHHHH
Q 008039 314 SCIQALDTRALL 325 (580)
Q Consensus 314 ~~~~A~~~ra~~ 325 (580)
.+..+...++.+
T Consensus 198 g~~~A~~~l~~l 209 (212)
T 3rjv_A 198 GFDTGCEEFDRI 209 (212)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 456666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.2e-09 Score=89.45 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=86.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.. .|....+++++|.++...|++++|+..+.+++.++|.+..+++.+|.++..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 99999999999999999999997 3446789999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 91 ~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 91 GDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999877
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=96.91 Aligned_cols=67 Identities=15% Similarity=0.297 Sum_probs=55.5
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++|+++++++|||+++.. ..+...|+.|++||++ +++
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~v-L~d 72 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--------------------PEAADKFKEINNAHAI-LTD 72 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC--------------------HHHHHHHHHHHHHHHH-HTC
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HcC
Confidence 3467899999999999999999999999999999997642 3567899999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 73 ~~~R~~YD 80 (109)
T 2ctw_A 73 ATKRNIYD 80 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65444444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-09 Score=111.26 Aligned_cols=172 Identities=10% Similarity=-0.031 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc---ChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 41 EIASALSLLDAALALSPRLELALELKARSLLYLR---RFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 41 d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~---r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
+...|..++..+...+|. ++..+|.+|...| ++++|+..|++++. ..+
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~---~g~----------------------- 210 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVS---RGT----------------------- 210 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---TTC-----------------------
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHH---CCC-----------------------
Confidence 566677778888777776 8888999999999 89999999888552 110
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHL----GLMEDAMVLLQTGKRLATAAF 193 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~l----G~~eeAi~~l~~al~l~~~~~ 193 (580)
.....++.||.+|... +++++|+.+|+++. .
T Consensus 211 ---------------------------------------~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~----- 245 (452)
T 3e4b_A 211 ---------------------------------------VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P----- 245 (452)
T ss_dssp ---------------------------------------SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G-----
T ss_pred ---------------------------------------HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C-----
Confidence 0012357889998766 79999999999876 2
Q ss_pred hhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHH
Q 008039 194 RRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIA-A--LDAGLYSEAIRHFSKIV 270 (580)
Q Consensus 194 r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~-~--~~~g~y~eAi~~y~~AL 270 (580)
++..+...+ |.. + ...+++++|+..|.+++
T Consensus 246 -----------------------------------g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 246 -----------------------------------GYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp -----------------------------------GSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred -----------------------------------CCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 112222222 776 3 46899999999999999
Q ss_pred hccCCCCCcccHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cCChhHHHHHHHH
Q 008039 271 DGRRGAPQGFLAECYMHRAFAYRSSG-----RIAESIADCNKTLALEPSCIQALDTRALLLET----IRCLPDCLHDLEH 341 (580)
Q Consensus 271 ~~~~~~~~~~~a~~~~nra~a~~~lg-----~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~----lg~~~eAi~~~~~ 341 (580)
+.. ++.+++++|.+|. .| ++++|+.+|.+++ |+++.+++++|.+|.. ..++++|+..|++
T Consensus 279 ~~g-------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 279 AAD-------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HTT-------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HCC-------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 852 6889999999998 56 9999999999999 9999999999999987 4599999999999
Q ss_pred HHH
Q 008039 342 LKL 344 (580)
Q Consensus 342 al~ 344 (580)
+.+
T Consensus 348 Aa~ 350 (452)
T 3e4b_A 348 AAR 350 (452)
T ss_dssp HHT
T ss_pred HHh
Confidence 954
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-10 Score=96.86 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=77.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
.+|++++|+.+|++++++.. .+| .....++.. |
T Consensus 2 ~~g~~~~A~~~~~~al~~~~-----------------------------------~~p--~~~~~~~~l----------g 34 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGL-----------------------------------QGK--DLAECYLGL----------G 34 (117)
T ss_dssp -----CCCHHHHHHHHSSCC-----------------------------------CHH--HHHHHHHHH----------H
T ss_pred CCCcHHHHHHHHHHHHHcCC-----------------------------------CCc--cHHHHHHHH----------H
Confidence 46899999999999986510 012 233333444 9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.+++..|+|++|+..|.+++.+ .|.+..+++++|.++..+|++++|+..+.+++.++|+++....
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQ-----FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999997 4457899999999999999999999999999999999987643
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-10 Score=97.71 Aligned_cols=71 Identities=18% Similarity=0.324 Sum_probs=57.7
Q ss_pred CCccchhhhhcccCCC-CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 393 TGNVDYYALIGLRRGC-SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a-~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
....+||.+|||.+++ +..+|+++||++++++|||++++.. .+..+...|+.|++||++ ++
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~-----------------~~~~a~~~f~~i~~AY~~-L~ 73 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKE-----------------EKLLAEERFRVIATAYET-LK 73 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHH-----------------HHHHHHHHHHHHHHHHHH-HH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcc-----------------ccHHHHHHHHHHHHHHHH-HC
Confidence 3467999999999999 9999999999999999999986511 346788999999999995 55
Q ss_pred chhhHHHHHH
Q 008039 472 NIMDEEAAEK 481 (580)
Q Consensus 472 ~~~~~~~~~~ 481 (580)
++..+..+..
T Consensus 74 d~~~R~~YD~ 83 (109)
T 2qsa_A 74 DDEAKTNYDY 83 (109)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5654444443
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-10 Score=100.66 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=51.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+||+.. ++..+|+++||++++++||||++.... ..+.+..|+..|+.|++||++|.+
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~-------------~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGA-------------SANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTC-------------CHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCccc-------------chhhHHHHHHHHHHHHHHHHHHcC
Confidence 468999999996 999999999999999999999653110 012456789999999999996554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-09 Score=115.11 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 160 WRYLVLGQACCHLGL----------MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~----------~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.+|+.+|.++..+|+ +++++.+++++++.. |.
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--------------------------------------pK 105 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------------------------------------PK 105 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--------------------------------------TT
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--------------------------------------CC
Confidence 357778999999998 999999999999773 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-ChHHHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAG--LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-RIAESIADCN 306 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g--~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-~~~eAl~~~~ 306 (580)
+-.+... + |.++.+.| +|++++..|.++|++ +|.+..+|++|+.+...+| .+++++++++
T Consensus 106 ~y~aW~h--R----------~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 106 SYGTWHH--R----------CWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp CHHHHHH--H----------HHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CHHHHHH--H----------HHHHHHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 4444333 3 88888889 789999999999997 4558999999999999999 9999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhc--------------CChhHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETI--------------RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~l--------------g~~~eAi~~~~~al~l 345 (580)
++|+.+|.+..||+.|+.++..+ +.+++++.++.+++.+
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999986 5678999999999887
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=2e-08 Score=105.59 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccc
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSV 139 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 139 (580)
|......|+.+...|+|++|++.|.+++ +..+......+ . ..+
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l---~~~~~~~~~~~-----------------------------~-----~~~ 46 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLL---DKDSSQSSAAA-----------------------------G-----ASV 46 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHH---HSCCCSSSBSS-----------------------------S-----SSB
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCcccchhHH-----------------------------H-----HHH
Confidence 4557778999999999999999999966 33332221100 0 000
Q ss_pred hHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCC
Q 008039 140 SDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTP 219 (580)
Q Consensus 140 ~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~ 219 (580)
.+.... ....++..||.+|+..|++++|+.+|++++.+.+.
T Consensus 47 ~~~~~~-----------~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~---------------------------- 87 (434)
T 4b4t_Q 47 DDKRRN-----------EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ---------------------------- 87 (434)
T ss_dssp CSHHHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT----------------------------
T ss_pred HHHHhh-----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------------------------
Confidence 000000 11124678999999999999999999999877421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC-CCCCcccHHHHHHHHHHHHHcCCh
Q 008039 220 PATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR-GAPQGFLAECYMHRAFAYRSSGRI 298 (580)
Q Consensus 220 ~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~-~~~~~~~a~~~~nra~a~~~lg~~ 298 (580)
.++....... ....|..+...|++++|+..|.+++.... .......+.++.++|.+|..+|+|
T Consensus 88 -------~~~~~~~~~~---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 88 -------FAKSKTVKVL---------KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp -------SCHHHHHHHH---------HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred -------ccchHHHHHH---------HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 0111111111 11126677778999999999999988631 122455788999999999999999
Q ss_pred HHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 299 AESIADCNKTLAL------EPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 299 ~eAl~~~~~Al~l------dP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.+|+..+.+++.. .|....++...|.+|..+|+|++|...|++++.+.
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 9999999999876 45568899999999999999999999999998885
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.7e-10 Score=92.90 Aligned_cols=63 Identities=16% Similarity=0.312 Sum_probs=51.6
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++..+|+++|+++++++|||+++.. .+.|+.|++||++ ++++
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----------------------~~~f~~i~~Ay~~-L~d~ 61 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-----------------------TEKFKEISEAFEI-LNDP 61 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-----------------------HHHHHHHHHHHHH-HTSH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-----------------------HHHHHHHHHHHHH-HCCH
Confidence 356899999999999999999999999999999997542 2479999999995 5556
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..+..+.
T Consensus 62 ~~R~~YD 68 (92)
T 2o37_A 62 QKREIYD 68 (92)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=99.96 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....+||.+|||.++++..+|+++||++++++||||++.... ++.+..+...|+.|++||+ ++++
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~--------------~~~~~~a~~~f~~i~~Ay~-~L~d 71 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVP--------------AGTVEECVQKFIEIDQAWK-ILGN 71 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCT--------------THHHHHHHHHHHHHHHHHH-HSSS
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCc--------------hhHHHHHHHHHHHHHHHHH-HcCC
Confidence 456799999999999999999999999999999999876431 1245678899999999999 5667
Q ss_pred hhhHHHHHHH
Q 008039 473 IMDEEAAEKR 482 (580)
Q Consensus 473 ~~~~~~~~~~ 482 (580)
+..+..+...
T Consensus 72 p~~R~~Yd~~ 81 (155)
T 2l6l_A 72 EETKREYDLQ 81 (155)
T ss_dssp HHHHCHHHHH
T ss_pred HHHHHHHHHH
Confidence 7755555543
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=6e-10 Score=90.78 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=46.3
Q ss_pred ccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..++|.+|||.++ ++..+|+++||++++++|||+++. .+.|+.|++||++|.+
T Consensus 10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~------------------------~~~f~~i~~AYe~L~~ 64 (79)
T 1faf_A 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------------------------HALMQELNSLWGTFKT 64 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHHhh
Confidence 3479999999999 999999999999999999999643 3569999999996654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.9e-09 Score=89.37 Aligned_cols=82 Identities=7% Similarity=-0.029 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+|+..|.+++.. .|.+..+++++|.++..+|++++|+..|.+++.++|++..+|+.+|.++..+|++++|+..|
T Consensus 2 ~~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3588999999997 34578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 008039 340 EHLKLLY 346 (580)
Q Consensus 340 ~~al~l~ 346 (580)
++++++.
T Consensus 77 ~~al~~~ 83 (115)
T 2kat_A 77 ESGLAAA 83 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999885
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.2e-10 Score=96.60 Aligned_cols=59 Identities=19% Similarity=0.425 Sum_probs=50.7
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..+||.+|||.++++..+|+++||++++++|||+++.. ..++..|+.|++||++ ++++.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------------------~~a~~~f~~i~~Ay~~-L~d~~ 60 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD--------------------KEAEAKFKEIKEAYEV-LTDSQ 60 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT--------------------CTHHHHHHHHTTTTTS-TTCSH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------------------HHHHHHHHHHHHHHHH-HCCHH
Confidence 35899999999999999999999999999999997642 1456789999999995 55565
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-08 Score=117.99 Aligned_cols=237 Identities=12% Similarity=0.072 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCc
Q 008039 25 KYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDS 104 (580)
Q Consensus 25 ~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~ 104 (580)
-|...|+.+. ..|++++|+..|.+| +++..|...|.++..+|+|++|+++|..++... ++.. .
T Consensus 1107 vWsqLAKAql---~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~-I----- 1169 (1630)
T 1xi4_A 1107 VWSQLAKAQL---QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESY-V----- 1169 (1630)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---cccc-c-----
Confidence 3556666665 679999999999886 888999999999999999999999999866321 1000 0
Q ss_pred hhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHH
Q 008039 105 SSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQT 184 (580)
Q Consensus 105 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~ 184 (580)
.+.+-..-+++ + .+. . +..+-.+. ....|+.+|..++..|++++|+.+|.+
T Consensus 1170 -dt~LafaYAKl---~--------------------rle-e-le~fI~~~---n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1170 -ETELIFALAKT---N--------------------RLA-E-LEEFINGP---NNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred -cHHHHHHHHhh---c--------------------CHH-H-HHHHHhCC---CHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 00000000000 0 000 0 11111111 123466789999999999999999987
Q ss_pred HHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 185 GKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 185 al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+-...... ..++ .+ -+...+....++.......++-+.+++..|+|..|..
T Consensus 1221 A~ny~rLA---~tLv---------kL-----------------ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1221 VSNFGRLA---STLV---------HL-----------------GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred hhHHHHHH---HHHH---------Hh-----------------CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHH
Confidence 53221000 0000 00 0112222222222222222333444444444444444
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET--IRCLPDCLHDLEHL 342 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~--lg~~~eAi~~~~~a 342 (580)
+... |.. .+..+..++..|...|.|++||..|+.+|.++|.+...+..+|.++.+ -++..+++..|...
T Consensus 1272 cgl~-Iiv--------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1272 CGLH-IVV--------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred HHHh-hhc--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4332 221 456677889999999999999999999999999999999888877764 55667777777766
Q ss_pred HHH
Q 008039 343 KLL 345 (580)
Q Consensus 343 l~l 345 (580)
+.+
T Consensus 1343 ini 1345 (1630)
T 1xi4_A 1343 VNI 1345 (1630)
T ss_pred ccc
Confidence 443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=118.91 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.|+.++..|+|++|+..|++++++ .|..+.+|+++|.+|..+|++++|+.+|+++++++|+++.+++++|.+|..
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 388889999999999999999997 455799999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
+|++++|+..|++++++
T Consensus 87 ~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV 103 (477)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999888
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=101.88 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=56.7
Q ss_pred chhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 397 DYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 397 d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
+||.+|||++++ +..+|+++||++++++||||+++.... .+..|...|..|++||++ ++++.
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~---------------e~~~a~~~f~~In~AY~v-L~dp~ 65 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQA---------------EQLAAVQQSATINQAWQT-LRHPL 65 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHH---------------HHHHHHHHHHHHHHHHHH-HHSHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHH-HcCch
Confidence 799999999999 999999999999999999998764422 456788999999999995 55566
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 66 ~R~~Yd 71 (171)
T 1fpo_A 66 MRAEYL 71 (171)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-08 Score=81.47 Aligned_cols=76 Identities=25% Similarity=0.264 Sum_probs=71.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..++..|+|++|+..|.+++.+ .|....+++++|.++..+|++++|+..+.+++.++|++..++..+|.++..+
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999997 3447889999999999999999999999999999999999999999999876
Q ss_pred C
Q 008039 330 R 330 (580)
Q Consensus 330 g 330 (580)
|
T Consensus 91 g 91 (91)
T 1na3_A 91 G 91 (91)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=86.37 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=46.4
Q ss_pred ccchhhhhcccC-CCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRR-GCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~-~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..++|++|||.+ +++..+|+++||++++++|||+++. ...|+.|++||++|.+.
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~------------------------~~~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS------------------------PFLATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------------------------HHHHHHHHHHHHHHhhh
Confidence 357999999998 7999999999999999999999532 24799999999977553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-09 Score=96.74 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 008039 171 HLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAA 250 (580)
Q Consensus 171 ~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G 250 (580)
+++.+++|+..|+++++++ |++..+...+ |
T Consensus 14 r~~~feeA~~~~~~Ai~l~--------------------------------------P~~aea~~n~------------G 43 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--------------------------------------PLDADNLTRW------------G 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------H
T ss_pred HHhHHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH------------H
Confidence 3456899999999999883 5555554433 7
Q ss_pred HHHHHcCC----------HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHH
Q 008039 251 IAALDAGL----------YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG-----------RIAESIADCNKTL 309 (580)
Q Consensus 251 ~~~~~~g~----------y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg-----------~~~eAl~~~~~Al 309 (580)
.++...++ +++||..|++||++ .|....+|+|+|.+|..+| ++++|+.+|.+||
T Consensus 44 ~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 44 GVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 77777766 46999999999998 4558999999999999985 8999999999999
Q ss_pred hcCCCcH
Q 008039 310 ALEPSCI 316 (580)
Q Consensus 310 ~ldP~~~ 316 (580)
+++|++.
T Consensus 119 ~l~P~~~ 125 (158)
T 1zu2_A 119 DEQPDNT 125 (158)
T ss_dssp HHCTTCH
T ss_pred HhCCCCH
Confidence 9999975
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.9e-09 Score=102.59 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred ccchhhhhcccCC--CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRG--CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~--a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||.+|||.++ ++..+|+++||++++++||||++..... .+..|...|+.|++||++ +++
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~---------------e~~~a~~~f~~In~AY~v-Lsd 105 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQT---------------EKDFSEKHSTLVNDAYKT-LLA 105 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHH---------------HHHHHHHHHHHHHHHHHH-HHS
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHH---------------HHHHHHHHHHHHHHHHHH-HCC
Confidence 5789999999986 7899999999999999999998754322 456788999999999995 566
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 106 p~~R~~Yd 113 (207)
T 3bvo_A 106 PLSRGLYL 113 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9.7e-09 Score=86.47 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=65.2
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.++.+++++|.++..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 355889999999999999999999999999999999999999999999999999999999999999884
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=4e-09 Score=87.63 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAE-CYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~-~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
..|..++..|+|++|+..|.+++.. .|.+.. +++++|.++..+|++++|+..|.+++.++|++..++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 3499999999999999999999997 345778 99999999999999999999999999999999998855
Q ss_pred HhcCChhHHHHHHHHHHHH
Q 008039 327 ETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 327 ~~lg~~~eAi~~~~~al~l 345 (580)
+.+.+++..|++++.+
T Consensus 75 ---~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYN 90 (99)
T ss_dssp ---HHHHHHHHHHCCTTHH
T ss_pred ---HHHHHHHHHHHHHhcc
Confidence 6677888888887666
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-09 Score=99.57 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=51.2
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.+||++|||..+++..+|+++||++++++||||+.+.... ..|...|+.|++||++|.+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e-----------------~~A~~~F~~I~eAYevLsD 175 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYE-----------------QYAKMIFMELNDAWSEFEN 175 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchH-----------------HHHHHHHHHHHHHHHHHCC
Confidence 6899999999999999999999999999999998653321 3588999999999996554
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-09 Score=94.53 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=46.1
Q ss_pred ccchhhhhcccCCCCH--HHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGCSR--SELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~--~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||.+|||.++++. .+|+++||++++++||||++. ...|+.|++||++|.+
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------------------------~e~f~~I~~AYevL~d 61 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHH
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------------------------HHHHHHHHHHHHHHCC
Confidence 3579999999999998 999999999999999999654 2459999999996544
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.6e-09 Score=100.75 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=54.0
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
.|||.+|||.++++..+|+++||++++++|||+++... .+.+.|+.|++||++ ++++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~--------------------~~~~~f~~i~~Ay~~-L~~~~~ 60 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP--------------------NAHGDFLKINRAYEV-LKDEDL 60 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT--------------------THHHHHHHHHHHHHH-HTSHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh--------------------HHHHHHHHHHHHHHH-hCCHHH
Confidence 48999999999999999999999999999999986432 467889999999995 566665
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 61 r~~yd~ 66 (210)
T 3apq_A 61 RKKYDK 66 (210)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-08 Score=105.60 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=111.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 008039 166 GQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLR 245 (580)
Q Consensus 166 G~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~ 245 (580)
+..+...|++++|+.+|++++.+... .+.|++......+..
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~---------------------------------~lg~~Hp~~a~~~~n------ 356 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEP---------------------------------VFADTNLYVLRLLSI------ 356 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT---------------------------------TBCTTSHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHH---------------------------------hcCCCCHHHHHHHHH------
Confidence 44577899999999999999987421 012444444332222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCc--
Q 008039 246 RRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSC-- 315 (580)
Q Consensus 246 ~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~-- 315 (580)
.|.++..+|+|++|+.+|.++|.+.. +.++|..+..++|+|.+|..+|+|++|+..+.+|+++ -|++
T Consensus 357 ---La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~ 433 (490)
T 3n71_A 357 ---ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPI 433 (490)
T ss_dssp ---HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred ---HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 29999999999999999999998731 3457889999999999999999999999999999976 4555
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 -IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 -~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+.+..++.++..++.|.+|...|+++.+-
T Consensus 434 ~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 434 TKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-07 Score=101.21 Aligned_cols=110 Identities=7% Similarity=-0.057 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----C
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----E 312 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----d 312 (580)
..+....+.+..+..+|+|++|+..|.++|.+.. +..+|..+..+.|+|.+|..+|+|++|+..+.++|++ -
T Consensus 307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 3344455667778899999999999999998742 2346778899999999999999999999999999976 3
Q ss_pred ---CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHhh
Q 008039 313 ---PSCIQALDTRALLLETIRCLPDCLHDLEHLKLLYNAIL 350 (580)
Q Consensus 313 ---P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l 350 (580)
|+-...+.++|.+|..+|+|++|+..|++|+++.+..+
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 44466799999999999999999999999999976543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.5e-09 Score=110.97 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
..|+++.|.+.+++. ..+.+|..+|.+++..|++++|++.|.+
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfik 57 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIK 57 (449)
T ss_dssp ------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 457899999999998 3346999999999999999999998876
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-07 Score=92.47 Aligned_cols=177 Identities=10% Similarity=-0.011 Sum_probs=129.2
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC-CCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSP--RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD-SGSVSS 102 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P--~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~-~~~~~~ 102 (580)
++-.|..+. ..|++++|+..+.+.|..+| .+..++...+.+++.+||++.|...++++.. ..|+. |
T Consensus 103 ~~~la~i~~---~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~----- 171 (310)
T 3mv2_B 103 LYLLATAQA---ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVS----- 171 (310)
T ss_dssp HHHHHHHHH---HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHH-----
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccc-----
Confidence 345555555 47999999999999999998 9999999999999999999999999988431 11100 0
Q ss_pred CchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcC--CHHHHHH
Q 008039 103 DSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLG--LMEDAMV 180 (580)
Q Consensus 103 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG--~~eeAi~ 180 (580)
..+....++.-|.+.+..| ++.+|..
T Consensus 172 ----------------------------------------------------~~d~~l~~Laea~v~l~~g~~~~q~A~~ 199 (310)
T 3mv2_B 172 ----------------------------------------------------GDNEMILNLAESYIKFATNKETATSNFY 199 (310)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHTCSTTTHHHH
T ss_pred ----------------------------------------------------cchHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 0001112222344466666 9999999
Q ss_pred HHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 008039 181 LLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYS 260 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~ 260 (580)
+|+++... .|+......++ + ++...|+|+
T Consensus 200 ~f~El~~~--------------------------------------~p~~~~~~lLl------------n-~~~~~g~~~ 228 (310)
T 3mv2_B 200 YYEELSQT--------------------------------------FPTWKTQLGLL------------N-LHLQQRNIA 228 (310)
T ss_dssp HHHHHHTT--------------------------------------SCSHHHHHHHH------------H-HHHHHTCHH
T ss_pred HHHHHHHh--------------------------------------CCCcccHHHHH------------H-HHHHcCCHH
Confidence 99996532 14423333333 2 788999999
Q ss_pred HHHHHHHHHHhccCCC--C----CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 261 EAIRHFSKIVDGRRGA--P----QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 261 eAi~~y~~AL~~~~~~--~----~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
+|...+..++... |. . .|.++.++.|+..+...+|+ +|.+..+++..++|+++-..
T Consensus 229 eAe~~L~~l~~~~-p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 229 EAQGIVELLLSDY-YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHSHH-HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHhc-ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999777641 11 0 25689999999999999998 89999999999999998753
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.2e-08 Score=105.61 Aligned_cols=55 Identities=9% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
|...|...+ ..|++.+|++.|.++ .++..+...+.++..+|+|++|+..++.+++
T Consensus 35 Ws~La~A~l---~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 35 WSQLAKAQL---QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHH---HcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 444555555 679999999999774 4566889999999999999999998887653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.8e-08 Score=83.06 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~ 326 (580)
|..++..|+|++|+..|.+++.+ .|....+|+++|.++..+|++++|+..|.+++.++|.+ ..++..+...+
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 26 GKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 99999999999999999999997 34578899999999999999999999999999998853 34444433333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=83.06 Aligned_cols=97 Identities=12% Similarity=0.137 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..|+.+|.+++..|++++|+..|++++++. |++..+. +..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~--~~l 44 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------------------PQNPVGY--SNK 44 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHH--HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------CCCHHHH--HHH
Confidence 367889999999999999999999999873 4444333 233
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC--cccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ--GFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~--~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
|.+++..|+|++|+..|.+++.+. |.+. .....+++++|.++..+|+++.|+..+.+
T Consensus 45 ----------g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 45 ----------AMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----------HHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999999999999973 3210 01178899999999999999888776654
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.2e-09 Score=109.52 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||++|||.++++.++|++|||+++++||||++.. ..|++.|+.|++||++ ++|+.
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---------------------~~a~~~f~~i~~Ay~v-L~d~~ 84 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---------------------NDAEAKFKDLAEAWEV-LKDEQ 84 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---------------------hHHHHHHHHHHHHHHH-hhhhh
Confidence 4689999999999999999999999999999999754 3567889999999995 66666
Q ss_pred hHHHHH
Q 008039 475 DEEAAE 480 (580)
Q Consensus 475 ~~~~~~ 480 (580)
.+..+.
T Consensus 85 ~R~~YD 90 (329)
T 3lz8_A 85 RRAEYD 90 (329)
T ss_dssp ------
T ss_pred hhcccc
Confidence 444444
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-08 Score=95.55 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=44.3
Q ss_pred ccchhhhhcccCCCC--HHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGCS--RSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~--~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||++|||.++++ .++|++|||++++++|||++++ .+.|+.|++||++| ++
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------------------------~e~F~~I~~AYevL-sd 64 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKM-ED 64 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------------------------CTTTTHHHHHHHHH-HH
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------------------------HHHHHHHHHHHHHh-CC
Confidence 458999999999998 6999999999999999999654 13599999999965 44
Q ss_pred hh
Q 008039 473 IM 474 (580)
Q Consensus 473 ~~ 474 (580)
+.
T Consensus 65 p~ 66 (174)
T 2pf4_E 65 GV 66 (174)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=77.94 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--IQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~~A~~~ra~~~~ 327 (580)
|..++..|+|++|+..|++++++ .|....+|+++|.+|..+|++++|+..+.+++.+.|.. ..+...+..++.
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVET-----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence 99999999999999999999997 34477899999999999999999999999999997643 344444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5e-07 Score=96.97 Aligned_cols=103 Identities=6% Similarity=-0.120 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSC 315 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~ 315 (580)
.+.+......|+|++|+..|.++|.+.. +..+|..+..+.|+|.+|..+|+|++|+..|.++|++ .|+-
T Consensus 302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 3444555567999999999999998632 2346778899999999999999999999999999976 3445
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLYNAI 349 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~ 349 (580)
...+.++|.+|..+|+|++|+..|++|+++.+..
T Consensus 382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999999999997554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-07 Score=73.54 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=64.1
Q ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+..+.+++++|.++...|++++|+..|.+++.++|++..+++.+|.++..+|++++|+..|++++++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999999999999999999999999999999887
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=77.31 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..+...+.+++|+..|.++.+.. ++.+++++|.+|.. .+++++|+.+|++|.+. .++.+++++|.+
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 102 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK 102 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 888888899999999999999962 67899999999999 89999999999999987 789999999999
Q ss_pred HHh----cCChhHHHHHHHHHHHH
Q 008039 326 LET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~----lg~~~eAi~~~~~al~l 345 (580)
|.. .+++++|+..|+++.++
T Consensus 103 y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 103 QYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 99999999999999765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.1e-06 Score=90.74 Aligned_cols=103 Identities=9% Similarity=-0.007 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--------EPSC 315 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--------dP~~ 315 (580)
......+..+|+|++|+..|.++|.+.. +..++.....+.|+|.+|..+|+|++|+..|.++|.+ .|+-
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 3445667789999999999999998632 2346778899999999999999999999999999976 3444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHh
Q 008039 316 IQALDTRALLLETIRCLPDCLHDLEHLKLLYNAI 349 (580)
Q Consensus 316 ~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~ 349 (580)
...++++|.+|..+|+|++|+..|++|+++.+..
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~ 404 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVT 404 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 6679999999999999999999999999997544
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-07 Score=87.75 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=53.4
Q ss_pred CCccchhhhh------cccC-CCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHH
Q 008039 393 TGNVDYYALI------GLRR-GCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRG 465 (580)
Q Consensus 393 ~~~~d~y~iL------gv~~-~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~A 465 (580)
....+||.+| |+.. +++..+|+++||++++++|||+++. +...|..|++|
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----------------------a~~~f~~i~~A 64 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----------------------GSEQSSTLNQA 64 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----------------------CSSGGGSHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----------------------HHHHHHHHHHH
Confidence 4567999999 4654 8999999999999999999999765 12459999999
Q ss_pred HHHhcCchhhHHHHHHHH
Q 008039 466 YSSVMSNIMDEEAAEKRR 483 (580)
Q Consensus 466 y~~l~~~~~~~~~~~~~~ 483 (580)
|++ ++++..+..+....
T Consensus 65 Y~v-L~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 65 YHT-LKDPLRRSQYMLKL 81 (181)
T ss_dssp HHH-HHSHHHHHHHHHHH
T ss_pred HHH-HcChHHHHHHHHHH
Confidence 995 56677666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.37 E-value=2.9e-06 Score=72.01 Aligned_cols=74 Identities=12% Similarity=0.057 Sum_probs=66.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCC--CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGA--PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~--~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
|..+++.|+|..|+..|.+|+...++. .......++.++|.|+.++|+++.|+..+++++.++|++..++.+++
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 999999999999999999999963222 13457899999999999999999999999999999999999988776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=71.92 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ-ALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~-A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+++|.++...|++++|+..|++++.++|+++. +++.+|.++..+|++++|+..|++++++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999 9999999999999999999999999888
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=69.99 Aligned_cols=67 Identities=16% Similarity=-0.048 Sum_probs=62.3
Q ss_pred cccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 279 GFLAECYMHRAFAYRSSGR---IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 279 ~~~a~~~~nra~a~~~lg~---~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++.++..+|.+++..++ .++|...+.++|++||+++.+++.+|.+++..|+|++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5588999999999987766 799999999999999999999999999999999999999999999655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-05 Score=82.31 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLL 71 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~ 71 (580)
++.-.+-| -+|+.++......++.+|+.+|++||+++|+++.++..++.+++
T Consensus 193 ~~~Aydl~-Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 193 RGALLTNF-YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp SGGGHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34344444 45677765556788999999999999999999999999999988
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-05 Score=78.16 Aligned_cols=142 Identities=14% Similarity=-0.001 Sum_probs=102.8
Q ss_pred cccccchhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 153 NCEKEGQWRYLVLGQACCHLGL---MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTE 229 (580)
Q Consensus 153 ~~~~~~~~~~~~LG~a~~~lG~---~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd 229 (580)
.+.....|-+++.|..++..+. +.+|+.+|++++++ ||+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------------------------------------DP~ 231 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------------------------------------SPE 231 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------------------------------------CTT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------------------------CCC
Confidence 3445667888999999988766 57899999999987 477
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcC----CHHHHHH-HHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHH
Q 008039 230 SESVSQLLSHIKLLLRRRTAAIAALDAG----LYSEAIR-HFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIAD 304 (580)
Q Consensus 230 ~~~~~~ll~~~k~~~~~k~~G~~~~~~g----~y~eAi~-~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~ 304 (580)
+..+...+..+.- ..+..+ ...+++. .+..+..+ + ..+..+.+|.-++.++...|++++|+..
T Consensus 232 ~a~A~A~la~a~~---------~~~~~~~~~~~~~~~l~~a~~a~~a~--~-~~~~~a~~~~alal~~l~~gd~d~A~~~ 299 (372)
T 3ly7_A 232 FTYARAEKALVDI---------VRHSQHPLDEKQLAALNTEIDNIVTL--P-ELNNLSIIYQIKAVSALVKGKTDESYQA 299 (372)
T ss_dssp CHHHHHHHHHHHH---------HHHHHSCCCHHHHHHHHHHHHHHHTC--G-GGTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHH---------HHhccCCCchhhHHHHHHHHHHHHhc--c-cCCcCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7666654422111 001111 1112221 22222221 1 1345788898899999989999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 305 CNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 305 ~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+.++|+ ..+|..+|.++...|++++|+..|++|+.+
T Consensus 300 l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 300 INTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999975 678999999999999999999999999988
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-05 Score=84.43 Aligned_cols=208 Identities=7% Similarity=0.002 Sum_probs=146.8
Q ss_pred hhhHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 39 HSEIASAL-SLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 39 ~~d~~~Al-~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.|+..+|. ..|++|+..+|.+...|...+......|+++.|.++|++++..+... ...+
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~--------------------~~~~ 415 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD--------------------LAAL 415 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------HHHH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--------------------hhhh
Confidence 46677887 99999999999999999999999999999999999999987432100 0000
Q ss_pred c---CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh
Q 008039 118 H---SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFR 194 (580)
Q Consensus 118 ~---~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r 194 (580)
. |. +. -.+..+.+ .....|...+....+.|.++.|...|.+|++..+
T Consensus 416 ~~~~p~----------~~----~~~~~~~~------------~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---- 465 (679)
T 4e6h_A 416 MEDDPT----------NE----SAINQLKS------------KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---- 465 (679)
T ss_dssp HHHSTT----------CH----HHHHHHHH------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----
T ss_pred hhccCc----------ch----hhhhhhcc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----
Confidence 0 00 00 00000000 0011355567777888999999999999986410
Q ss_pred hhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 008039 195 RESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDA-GLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 195 ~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~-g~y~eAi~~y~~AL~~~ 273 (580)
+....+. ... +..-++. ++++.|...|..+|+.
T Consensus 466 ---------------------------------~~~~~ly--i~~----------A~lE~~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 466 ---------------------------------LVTPDIY--LEN----------AYIEYHISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp ---------------------------------GSCTHHH--HHH----------HHHHHTTTSCCHHHHHHHHHHHHH-
T ss_pred ---------------------------------CCChHHH--HHH----------HHHHHHhCCCHHHHHHHHHHHHHH-
Confidence 0001111 111 4444454 4599999999999997
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 274 RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP---SCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 274 ~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP---~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|....++...+......|+.+.|...|++|+...| .....|......-...|+.+.+...++++.+.+
T Consensus 500 ----~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 500 ----FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp ----HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred ----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344677777778888889999999999999999988 356677777777788999999999999998883
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-05 Score=68.93 Aligned_cols=99 Identities=10% Similarity=-0.067 Sum_probs=80.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
||.+|...+.+++|+.+|+++.+.. +..+ .+..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g----------------------------------------~~~a--~~~L----- 63 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN----------------------------------------SGNG--CRFL----- 63 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT----------------------------------------CHHH--HHHH-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC----------------------------------------CHHH--HHHH-----
Confidence 8999999999999999999988641 1222 2222
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcH
Q 008039 245 RRRTAAIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCI 316 (580)
Q Consensus 245 ~~k~~G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~ 316 (580)
|..++. .+++.+|+..|+++.+.. ++.+++++|.+|.. .+++++|+.+|.+|++. .++
T Consensus 64 -----g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~ 129 (138)
T 1klx_A 64 -----GDFYENGKYVKKDLRKAAQYYSKACGLN-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSE 129 (138)
T ss_dssp -----HHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred -----HHHHHcCCCCCccHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCH
Confidence 889988 899999999999999962 67899999999999 99999999999999998 567
Q ss_pred HHHHHHHH
Q 008039 317 QALDTRAL 324 (580)
Q Consensus 317 ~A~~~ra~ 324 (580)
.+.+.++.
T Consensus 130 ~A~~~l~~ 137 (138)
T 1klx_A 130 DACGILNN 137 (138)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 77666553
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.2e-05 Score=86.11 Aligned_cols=121 Identities=11% Similarity=-0.007 Sum_probs=90.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRR 246 (580)
Q Consensus 167 ~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~ 246 (580)
.-+...|++++|+..+++++.+.. . .+.|++......+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~------------~---------------------~lg~~h~~~~~~~~-------- 333 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNS------------E---------------------RLPDINIYQLKVLD-------- 333 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSS------------C---------------------CCCTTSHHHHHHHH--------
T ss_pred HHHHhhccHHHHHHHHHHHHHhcc------------C---------------------cCCccchHHHHHHH--------
Confidence 346678999999999999986521 0 11244444433322
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc---CCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcH--
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGR---RGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSCI-- 316 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~---~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~~-- 316 (580)
..|.++..+|+|++|+.+|.++|.+. -+..+|..+..++|+|.+|..+|++++|+..+.+|+++ -|+++
T Consensus 334 -~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 334 -CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred -HHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 22899999999999999999999862 24558889999999999999999999999999999976 45554
Q ss_pred -HHHHHHHHHHHhc
Q 008039 317 -QALDTRALLLETI 329 (580)
Q Consensus 317 -~A~~~ra~~~~~l 329 (580)
+.+.+++.++..+
T Consensus 413 ~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 413 EDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 4455566665443
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=5e-07 Score=103.97 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=33.0
Q ss_pred CccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 394 GNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 394 ~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
...+||.+|||.++++.++|+++||++++++||||++.. ..+.+.|+.|++||++ ++++
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~--------------------~~~~~~f~~i~~ay~~-L~~~ 77 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--------------------PNAHGDFLKINRAYEV-LKDE 77 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-------------------------------------------CTHHHH-HHSH
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--------------------hHHHHHHHHHHHHHHH-HcCh
Confidence 457899999999999999999999999999999997542 3567889999999995 5556
Q ss_pred hhHHHHH
Q 008039 474 MDEEAAE 480 (580)
Q Consensus 474 ~~~~~~~ 480 (580)
..+..+.
T Consensus 78 ~~r~~yd 84 (780)
T 3apo_A 78 DLRKKYD 84 (780)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=84.14 Aligned_cols=108 Identities=10% Similarity=0.014 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
....|++++|+.+|++++.+... .+.|++......+..
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~---------------------------------~lg~~Hp~~a~~~~n--------- 345 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSS---------------------------------VFEDSNVYMLHMMYQ--------- 345 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTT---------------------------------TBCTTSHHHHHHHHH---------
T ss_pred hhhccCHHHHHHHHHHHHHHhhC---------------------------------ccChhchHHHHHHHH---------
Confidence 34568999999999999987421 012455554333322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCcHHH
Q 008039 249 AAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL-----EPSCIQA 318 (580)
Q Consensus 249 ~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l-----dP~~~~A 318 (580)
.|.++..+|+|++|+.+|.++|.+.. +..+|..+..|+|+|.+|..+|+|++|+..+.+|+++ -|+++..
T Consensus 346 La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 346 AMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 29999999999999999999998732 3457889999999999999999999999999999986 5666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00025 Score=71.29 Aligned_cols=84 Identities=10% Similarity=-0.035 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc-----CChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHh-cCC
Q 008039 259 YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS-----GRIAESIADCNKTLALEPSC-IQALDTRALLLET-IRC 331 (580)
Q Consensus 259 y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l-----g~~~eAl~~~~~Al~ldP~~-~~A~~~ra~~~~~-lg~ 331 (580)
...|...+.++|++ ||. -....+|..+|..|... |+.+.|...|++||+++|+. +.+++..|..+.. .|+
T Consensus 179 l~~A~a~lerAleL-DP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL-WPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH-CTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh-CCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 58899999999998 332 22677999999999996 99999999999999999975 9999999999988 599
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
+++|...+++++.+
T Consensus 256 ~~~a~~~L~kAL~a 269 (301)
T 3u64_A 256 RAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0002 Score=81.04 Aligned_cols=196 Identities=8% Similarity=-0.142 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHH-HHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVA-DMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSG 120 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 120 (580)
.......|++||...|.++..|...|..+...|..++|+ ..|++++..+ |.
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---P~------------------------- 376 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---PN------------------------- 376 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---TT-------------------------
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---CC-------------------------
Confidence 455678999999999999999999999999999999997 9999976321 11
Q ss_pred CCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh--hhc
Q 008039 121 GDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR--ESI 198 (580)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~--~~~ 198 (580)
.. ..|+.++......|+++.|...|++++...+..+.. +.
T Consensus 377 -----------------------------------s~--~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~- 418 (679)
T 4e6h_A 377 -----------------------------------SA--VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED- 418 (679)
T ss_dssp -----------------------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----------------------------------CH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc-
Confidence 01 125566888889999999999999998753211110 00
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH---------HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESE---------SVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKI 269 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~---------~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~A 269 (580)
.|... .+..+.. -++...+.|..+.|...|.+|
T Consensus 419 ----------------------------~p~~~~~~~~~~~~~~~vWi~----------y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 419 ----------------------------DPTNESAINQLKSKLTYVYCV----------YMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp ----------------------------STTCHHHHHHHHHHHHHHHHH----------HHHHHHHHHCHHHHHHHHHHH
T ss_pred ----------------------------cCcchhhhhhhccchHHHHHH----------HHHHHHHcCCHHHHHHHHHHH
Confidence 01110 1111111 144445678899999999999
Q ss_pred HhccCCCCCcccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 270 VDGRRGAPQGFLAECYMHRAFAYRSSGR-IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 270 L~~~~~~~~~~~a~~~~nra~a~~~lg~-~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
++.. + +....+|...+..-...++ ++.|...|+++|+..|+++..+...+......|+.+.|...|++++..
T Consensus 461 ~~~~-~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 461 RRLK-K---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHTG-G---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHhc-C---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9851 1 1235667766776666654 999999999999999999999999999999999999999999999654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=64.02 Aligned_cols=69 Identities=26% Similarity=0.252 Sum_probs=59.6
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
+++..+-+...|..++-........+|..+|.+||.++|.++.++.++|..++..|+|++|+..+++++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677778888888744444447999999999999999999999999999999999999999999955
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00017 Score=65.59 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=61.7
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAG---LYSEAIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g---~y~eAi~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
|..+.+.+ ++.++|..++..++. + .| .+..++|++|.+|+++|+|++|+.+|+++|+++|+|..|...+-.
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~-~---~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPK-G---SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHH-S---CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-C---CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88999988 778999999999995 2 13 468999999999999999999999999999999999998654433
|
| >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=3e-05 Score=60.11 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=42.6
Q ss_pred chhhhhcccCC---CCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 397 DYYALIGLRRG---CSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 397 d~y~iLgv~~~---a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
.-|.||||..+ ++.++|+++||++....||||++++ -+...|++|++.|..
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~------------------------yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSF------------------------YLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCH------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCH------------------------HHHHHHHHHHHHHHH
Confidence 46899999999 9999999999999999999997653 346678888886543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00039 Score=63.28 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHHhcCChhH
Q 008039 260 SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSG---RIAESIADCNKTLALE-P-SCIQALDTRALLLETIRCLPD 334 (580)
Q Consensus 260 ~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg---~~~eAl~~~~~Al~ld-P-~~~~A~~~ra~~~~~lg~~~e 334 (580)
..+.+.|.+.+.. .+....+.++.|.|+.+.+ ++.++|..++..++.+ | +..+++|.+|..+.++|+|++
T Consensus 15 ~~~~~~y~~e~~~-----~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcc-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4555667777774 2347899999999999999 6779999999999999 7 679999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 335 CLHDLEHLKLL 345 (580)
Q Consensus 335 Ai~~~~~al~l 345 (580)
|+..+++++++
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999988
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00052 Score=57.82 Aligned_cols=65 Identities=14% Similarity=-0.054 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 281 LAECYMHRAFAYRSSGRIAESIADCNKTLALE-------PSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 281 ~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-------P~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+.-.+.+|..++..|+|..|+.++..|+... +.....+..+|.++.++|+++.|+..+++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56677899999999999999999999999863 456889999999999999999999999999988
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0028 Score=58.19 Aligned_cols=74 Identities=14% Similarity=0.193 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
-|.++--...++..|.|+.|+-....++.+... ..+.+ +-......+.-
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~---------~~~~~----------------------sp~~~~~~l~~ 68 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNN---------NPELF----------------------SPPQKYQLLVY 68 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------STTSS----------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC---------Ccccc----------------------cHHHHHHHHHH
Confidence 366777788899999999999999988877421 00110 11112222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGR 273 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~ 273 (580)
. |+.+|..|+|..|...|.++|...
T Consensus 69 l----------adalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 69 H----------ADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp H----------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H----------HHHHHcccHHHHHHHHHHHHHHHH
Confidence 2 999999999999999999998863
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0043 Score=56.92 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccC--CC--CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------C----
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRR--GA--PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE------P---- 313 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~--~~--~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld------P---- 313 (580)
+....++..|.|+.|+-.+..++.+.+ ++ .......+++.+|.+++..|+|..|+..|.+||.+. |
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 337888999999999999999887631 11 122356788999999999999999999999997551 1
Q ss_pred ---------------CcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 314 ---------------SCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 314 ---------------~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
...+..|..|.||.+++++++|+..++.+
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0045 Score=62.14 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHc-----cChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHH
Q 008039 40 SEIASALSLLDAALALSPR--LELALELKARSLLYL-----RRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRE 112 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~--~~~~~~~rA~~l~~l-----~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (580)
+....|...+++||+++|+ +..+|..+|..|..+ |..+.|.++|+++| +++|+..
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~--------------- 238 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHD--------------- 238 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTC---------------
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCC---------------
Confidence 6789999999999999999 778999999999996 99999999999965 4444211
Q ss_pred HHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Q 008039 113 RVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH-LGLMEDAMVLLQTGKRLA 189 (580)
Q Consensus 113 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~-lG~~eeAi~~l~~al~l~ 189 (580)
...++..|..++. .|+.++|..+|++++++.
T Consensus 239 ----------------------------------------------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 239 ----------------------------------------------PDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp ----------------------------------------------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred ----------------------------------------------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 1246667998888 599999999999999763
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.1 Score=56.59 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHh
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALE-PSCIQALDTRALLLET 328 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ld-P~~~~A~~~ra~~~~~ 328 (580)
-..+.+.|++++|+..|.+..... ...+...|..+-.+|.+.|++++|+..+.+..+.. .-+...|..+-.++..
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g----~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFG----IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC----CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 557889999999999999987741 12267788888999999999999999999987653 2256789999999999
Q ss_pred cCChhHHHHHHHHHHHH
Q 008039 329 IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 lg~~~eAi~~~~~al~l 345 (580)
.|++++|...|++..+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998655
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.62 E-value=0.3 Score=52.67 Aligned_cols=212 Identities=10% Similarity=-0.104 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCC
Q 008039 42 IASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGG 121 (580)
Q Consensus 42 ~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 121 (580)
......+|+++|...|..+..|...+..+...|..++|...|++++.. |.+. .++..-+......
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~----------~l~~~y~~~~e~~- 259 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGM----------FLSLYYGLVMDEE- 259 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSS----------HHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcH----------HHHHHHHhhcchh-
Confidence 455678999999999999999999999999999999999999997733 4322 0110000000000
Q ss_pred CCCCCCCCCCCCcccccchHHHHHHHHh------hhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh
Q 008039 122 DSSDDSLGRDPSFKCFSVSDLKKKVMAG------LCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRR 195 (580)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~------l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~ 195 (580)
.+ ...+....... .......... |...+....+.|.++.|...|+++ +.
T Consensus 260 -----------~~----~~~l~~~~~~~~~~~~~~~~~~~~~~l--w~~y~~~~~r~~~~~~AR~i~~~A-~~------- 314 (493)
T 2uy1_A 260 -----------AV----YGDLKRKYSMGEAESAEKVFSKELDLL--RINHLNYVLKKRGLELFRKLFIEL-GN------- 314 (493)
T ss_dssp -----------HH----HHHHHHHTC----------CHHHHHHH--HHHHHHHHHHHHCHHHHHHHHHHH-TT-------
T ss_pred -----------HH----HHHHHHHHHhhccchhhhhcccccHHH--HHHHHHHHHHcCCHHHHHHHHHHh-hC-------
Confidence 00 00000000000 0000111223 344456666778899999999887 32
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccC
Q 008039 196 ESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG-LYSEAIRHFSKIVDGRR 274 (580)
Q Consensus 196 ~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g-~y~eAi~~y~~AL~~~~ 274 (580)
|.. ....+... +..-+..+ +++.|...|..++..
T Consensus 315 --------------------------------~~~-~~~v~i~~----------A~lE~~~~~d~~~ar~ife~al~~-- 349 (493)
T 2uy1_A 315 --------------------------------EGV-GPHVFIYC----------AFIEYYATGSRATPYNIFSSGLLK-- 349 (493)
T ss_dssp --------------------------------SCC-CHHHHHHH----------HHHHHHHHCCSHHHHHHHHHHHHH--
T ss_pred --------------------------------CCC-ChHHHHHH----------HHHHHHHCCChHHHHHHHHHHHHH--
Confidence 110 01111111 32333333 699999999999985
Q ss_pred CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 275 GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 275 ~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|..+.++...+.-...+|+.+.|...++++ +.....|......-...|+.+.+...|++++..
T Consensus 350 ---~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 350 ---HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2334555666666777889999999999997 346777777777777789999988889998775
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=51.57 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=61.7
Q ss_pred HHHHHHcCCHHH---HHHHHHHHHhccCCCCCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 008039 250 AIAALDAGLYSE---AIRHFSKIVDGRRGAPQG-FLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALL 325 (580)
Q Consensus 250 G~~~~~~g~y~e---Ai~~y~~AL~~~~~~~~~-~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~ 325 (580)
|..+.+..+..+ +|.++...+... .| ..-.++|.+|..++++|+|..|+.+|+..|+++|+|.+|...+..+
T Consensus 42 Aw~Lv~S~~~~d~~~GI~lLe~l~~~~----~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 42 AWCLVRTRYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHTTTS----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888887776 999999988841 12 4778999999999999999999999999999999999987665544
Q ss_pred H
Q 008039 326 L 326 (580)
Q Consensus 326 ~ 326 (580)
-
T Consensus 118 ~ 118 (126)
T 1nzn_A 118 D 118 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.13 Score=55.74 Aligned_cols=101 Identities=9% Similarity=-0.073 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.|..|-.+|.+.|++++|+.+|+...+.. ..|+......+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g------------------------------------~~Pd~~tyn~l---- 146 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG------------------------------------IQPRLRSYGPA---- 146 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------------------------CCCCHHHHHHH----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------------------------CCCccceehHH----
Confidence 56777889999999999999999865431 12544443333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL--EPS 314 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l--dP~ 314 (580)
-..+.+.|++++|.+.|.+..+.. ...+...|..+-.++.+.|++++|...+.+.-+. .|+
T Consensus 147 ---------I~~~~~~g~~~~A~~l~~~M~~~G----~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 147 ---------LFGFCRKGDADKAYEVDAHMVESE----VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHTT----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 456789999999999999988742 1226778999999999999999999999987553 454
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.11 Score=54.40 Aligned_cols=103 Identities=20% Similarity=0.130 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC------Cc-----------ccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP------QG-----------FLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~------~~-----------~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
..+...|......|+...|+..|.+|+.+-.... .+ ....+...++.++...|++.+++..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344447777788999999999999999732110 00 112445567788899999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 307 KTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 307 ~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.++..+|-+..+|..+-.+|...|+..+|+..|+++.+..
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=96.05 E-value=0.36 Score=52.00 Aligned_cols=62 Identities=15% Similarity=-0.008 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-hHHHHHHHHhhh
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR-FKDVADMLQDYI 87 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r-~~eAi~~~~~~l 87 (580)
.+...+..+...+ ..|+++.+..+|.++|...| +..+|..-..-....+. .+.....|+.++
T Consensus 13 ~aR~vyer~l~~~---P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 13 SPSAIMEHARRLY---MSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp CHHHHHHHHHHHH---HTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 4445555555555 34788889999999999888 66777766665555542 233444555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.023 Score=49.75 Aligned_cols=83 Identities=8% Similarity=-0.075 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHHHhcCCh
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAE---SIADCNKTLALE-P-SCIQALDTRALLLETIRCL 332 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~e---Al~~~~~Al~ld-P-~~~~A~~~ra~~~~~lg~~ 332 (580)
....+...|.+.+.. .+....+-++.|.++.+..+..+ +|..+...+..+ | ...+.+|.+|..+.++|+|
T Consensus 16 ~l~~~~~~y~~e~~~-----~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcc-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 345566667777764 22477899999999999998777 999999999887 5 6789999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 008039 333 PDCLHDLEHLKLL 345 (580)
Q Consensus 333 ~eAi~~~~~al~l 345 (580)
++|...++.++++
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999888
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.027 Score=49.64 Aligned_cols=73 Identities=10% Similarity=0.047 Sum_probs=59.0
Q ss_pred HHHHHHcCC---HHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 250 AIAALDAGL---YSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g~---y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
+..+.+..+ ...+|..+...+.. .| ...-.+++.+|.++.++|+|..|..+++..|+++|+|.+|...+..+-
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~-~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie 122 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKE-AE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHH-CG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-Cc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 666666554 45789999988874 22 246789999999999999999999999999999999999876655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.1 Score=46.51 Aligned_cols=71 Identities=10% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHHHHHcCCH---HHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 008039 250 AIAALDAGLY---SEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g~y---~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~ 324 (580)
+..+.+..+- .++|..++..+.. .|. ..-.++|.+|.+++++|+|.+|..+|+..|+++|+|.+|...+..
T Consensus 46 Aw~Lv~S~~~~di~~GI~LLe~l~~~-~~~---~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 46 AWGLIKSTDVNDERLGVKILTDIYKE-AES---RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHH-CCS---THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhc-Ccc---chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 7778877654 5799999998884 332 367899999999999999999999999999999999998654443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.55 Score=52.76 Aligned_cols=113 Identities=16% Similarity=-0.031 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
|-.+|..+...|+++.|+.+|.++-... .+..++....
T Consensus 684 W~~la~~al~~~~~~~A~~~y~~~~d~~------------------------------------------~l~~l~~~~~ 721 (814)
T 3mkq_A 684 WRALGDASLQRFNFKLAIEAFTNAHDLE------------------------------------------SLFLLHSSFN 721 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHH------------------------------------------HHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHccChh------------------------------------------hhHHHHHHcC
Confidence 4568999999999999999999875442 2222222222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc--H-HH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC--I-QA 318 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~--~-~A 318 (580)
....+...+..+...|++..|...|.+.=+. -..-.+|..+++|++|+....+ ..|.. . ..
T Consensus 722 ~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~-------------~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~ 785 (814)
T 3mkq_A 722 NKEGLVTLAKDAETTGKFNLAFNAYWIAGDI-------------QGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDI 785 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH-------------HHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHcCCH-------------HHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHH
Confidence 2233334477777788888887776543221 1224556778888888876554 45544 3 34
Q ss_pred HHHHHHHHHhcCCh
Q 008039 319 LDTRALLLETIRCL 332 (580)
Q Consensus 319 ~~~ra~~~~~lg~~ 332 (580)
....+.-+...|++
T Consensus 786 ~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 786 VTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHTTTCH
T ss_pred HHHHHHHHHhccch
Confidence 44445555666654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.074 Score=46.88 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++--+..|+.|+......+...++.++...+..+| .....++.+|..+..+|+|++|...++.. |+..|++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l---L~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---FEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH---HTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH---HhhCCCCH
Confidence 345566889999998889999999999999999999 56899999999999999999999999994 46666544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.11 Score=46.25 Aligned_cols=73 Identities=10% Similarity=0.104 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSP-RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P-~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
..+--+..|+.|+......+...++.+++..+.-+| +...+++.+|..+..+|+|++|..+++.. |+..|++.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l---L~~eP~n~ 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL---FEHERNNK 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH---HHTCCCCH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH---HhcCCCcH
Confidence 444566889999998889999999999999999999 67899999999999999999999999994 46666544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.88 E-value=4.4 Score=42.27 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHccChHHHHHHHHhhhh
Q 008039 60 ELALELKARSLLYLRRFKDVADMLQDYIP 88 (580)
Q Consensus 60 ~~~~~~rA~~l~~l~r~~eAi~~~~~~l~ 88 (580)
..++..+|..|...|++++-.+.+....|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667899999999999999998877543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.93 Score=51.40 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 282 AECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 282 a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
..++.--+.-++..|+|+-|+....+|+.+-|.....|+.++.+|..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455555777778999999999999999999999999999999999999999999887766
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=2 Score=44.70 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH--HH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI--KL 242 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~--k~ 242 (580)
.|......|+.+.|+..|.+++.+ |..+.+... ++...+......+ ..
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L-----------~rG~~L~~~-------------------~~~~w~~~~r~~l~~~~ 170 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALRE-----------WRGPVLDDL-------------------RDFQFVEPFATALVEDK 170 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-----------CCSSTTGGG-------------------TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh-----------cCCCCCCCC-------------------CchhHHHHHHHHHHHHH
Confidence 345556679999999999999876 223222100 1111111111111 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA 310 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ 310 (580)
+......+..+...|++.+|+..+..++.. +|++-.+|..+-.++...|+..+|+..|.+.-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-----~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFE-----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233445577888999999999999999997 567888999999999999999999999887644
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.79 E-value=6.9 Score=40.77 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=100.4
Q ss_pred HHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHH
Q 008039 65 LKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKK 144 (580)
Q Consensus 65 ~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k 144 (580)
.+|..|+..|+|.+|+.++.+.+..|+... | +
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d-----------------------------------------------~ 135 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLD-D-----------------------------------------------K 135 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-C-----------------------------------------------T
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccc-c-----------------------------------------------c
Confidence 589999999999999999998775543310 0 0
Q ss_pred HHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008039 145 KVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPP 224 (580)
Q Consensus 145 ~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 224 (580)
.. ....|....+.|+.+|++..+...|.++...... +
T Consensus 136 ~~-----------llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a--------------------------------i 172 (394)
T 3txn_A 136 NL-----------LVEVQLLESKTYHALSNLPKARAALTSARTTANA--------------------------------I 172 (394)
T ss_dssp HH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------------------S
T ss_pred hh-----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc--------------------------------C
Confidence 00 1124666788999999999999999999877532 0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHH
Q 008039 225 RTMTESESVSQLLSHIKLLLRRRTAAIAAL-DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIA 303 (580)
Q Consensus 225 ~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~-~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~ 303 (580)
..+|.-...... ..|..++ ..++|.+|...|-++...-+....+....++...+.|-+-+++..+--.
T Consensus 173 ~~~p~i~a~i~~-----------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~ 241 (394)
T 3txn_A 173 YCPPKVQGALDL-----------QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ 241 (394)
T ss_dssp CCCHHHHHHHHH-----------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCHHHHHHHHH-----------HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 011211111111 2388888 8999999999999997532221123334556667778887777433222
Q ss_pred HHH-H-HHhcCCCcHHHHHHHHHHHHhcCChh
Q 008039 304 DCN-K-TLALEPSCIQALDTRALLLETIRCLP 333 (580)
Q Consensus 304 ~~~-~-Al~ldP~~~~A~~~ra~~~~~lg~~~ 333 (580)
... . ....+.....++..+..++. .+++.
T Consensus 242 ~l~~~~~~~~~~pei~~l~~L~~a~~-~~dl~ 272 (394)
T 3txn_A 242 LVSGKLAITYSGRDIDAMKSVAEASH-KRSLA 272 (394)
T ss_dssp HHHSHHHHTTCSHHHHHHHHHHHHHH-TTCHH
T ss_pred HhccccccccCCccHHHHHHHHHHHH-hCCHH
Confidence 111 1 12222223455666666653 34443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.58 E-value=8.6 Score=40.63 Aligned_cols=217 Identities=18% Similarity=0.081 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcC
Q 008039 21 KIVDKYIRDARTLIATQEHSEIASALSLLDAALA------LSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMAN 94 (580)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~------l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~ 94 (580)
+.+++-+..+..+ ..|++..|++.+-..-. -.+....++.....+++..++++...+.+.-.. +..
T Consensus 15 ~~~~~~~~~~~~l----~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr- 86 (445)
T 4b4t_P 15 QILKEEFPKIDSL----AQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKH- 86 (445)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTT-
T ss_pred HHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHh-
Confidence 3667777778776 36899999987743222 235567788888899999999988766544311 110
Q ss_pred CCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHH--HHHHhhhcccc-c-----cchhHHHHHH
Q 008039 95 DDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKK--KVMAGLCRNCE-K-----EGQWRYLVLG 166 (580)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~~~~l~~~~~-~-----~~~~~~~~LG 166 (580)
+.. -.+.++.-......+.... ..+... .++..+..-.. . +.+.....|+
T Consensus 87 ----~ql-k~ai~~~V~~~~~~l~~~~-----------------~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La 144 (445)
T 4b4t_P 87 ----GQL-KLSIQYMIQKVMEYLKSSK-----------------SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLV 144 (445)
T ss_dssp ----TTS-HHHHHHHHHHHHHHHHHHC-----------------TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHH
T ss_pred ----hhh-HHHHHHHHHHHHHHHhcCC-----------------chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 000 0011111122222221110 001111 22222211111 1 1122235689
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRR 246 (580)
Q Consensus 167 ~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~ 246 (580)
.+|...|++.+|...++....=. . ..++....+..++
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et--------~--------------------------~~~~~~~kve~~l--------- 181 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVET--------Y--------------------------GSMEMSEKIQFIL--------- 181 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH--------C--------------------------SSSCHHHHHHHHH---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHH--------H--------------------------hcccHHHHHHHHH---------
Confidence 99999999999999998765210 0 0112222233333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDG--RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~--~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
.....++..++|..|...++++... ..+.+.......+...|..+...++|.+|-.+|..++..
T Consensus 182 -~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 182 -EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3477889999999999999987431 112223345677788899999999999999999888754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=89.51 E-value=6.6 Score=43.75 Aligned_cols=75 Identities=11% Similarity=-0.123 Sum_probs=46.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+.+.|+++.|+.+|.++=.. -.+..++...|+.+........+.. ...+-. ...++..+
T Consensus 688 a~~al~~~~~~~A~~~y~~~~d~-------------~~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~----A~~~~~~~ 749 (814)
T 3mkq_A 688 GDASLQRFNFKLAIEAFTNAHDL-------------ESLFLLHSSFNNKEGLVTLAKDAET-TGKFNL----AFNAYWIA 749 (814)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTCH-------------HHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHH----HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHccCh-------------hhhHHHHHHcCCHHHHHHHHHHHHH-cCchHH----HHHHHHHc
Confidence 88999999999999999987443 1223344446666554444333333 233222 23356667
Q ss_pred CChhHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHL 342 (580)
Q Consensus 330 g~~~eAi~~~~~a 342 (580)
|++++|++.|.+.
T Consensus 750 g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 750 GDIQGAKDLLIKS 762 (814)
T ss_dssp TCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc
Confidence 8888888777655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.91 E-value=3.1 Score=37.42 Aligned_cols=103 Identities=11% Similarity=-0.034 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhccCCCCCc---ccHHHHHHHHHHHHHcCChH
Q 008039 229 ESESVSQLLSHIKLLLRRRTAAIAALDAGLY------SEAIRHFSKIVDGRRGAPQG---FLAECYMHRAFAYRSSGRIA 299 (580)
Q Consensus 229 d~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y------~eAi~~y~~AL~~~~~~~~~---~~a~~~~nra~a~~~lg~~~ 299 (580)
+++.+..++.. +-+.|+. +.-++.|++|+...+|.... ...-+|.+.| .+..+++.+
T Consensus 12 ~yd~W~~yl~l-------------lE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d 77 (161)
T 4h7y_A 12 NPEDWLSLLLK-------------LEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPD 77 (161)
T ss_dssp SHHHHHHHHHH-------------HHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGG
T ss_pred CHHHHHHHHHH-------------HHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHH
Confidence 55667666543 2233666 88889999999965443111 1234555555 446779999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 300 ESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 300 eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|...|..++.+...+.+.|...|+--...|++..|...+.+++.+
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999876
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.90 E-value=14 Score=33.95 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.|-.||......|+++-|..+|+++-.+
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 3667899999999999999999986533
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=88.09 E-value=16 Score=33.59 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhh-hhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPS-LKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
.|+|..++-++. +-+-......++.||-.+++|..|+.++++.|.. .+.+|+
T Consensus 46 ngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~---------------------- 98 (242)
T 3kae_A 46 NGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD---------------------- 98 (242)
T ss_dssp TTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC----------------------
T ss_pred cchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc----------------------
Confidence 578888776653 3345677778999999999999999999986621 111111
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRL 188 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l 188 (580)
.|..+.||=+... +..+-+..+|..+..+|+.++||.+|......
T Consensus 99 ------------~d~~~~~ffvd~~--------------DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 99 ------------VDARIQEMFVDPG--------------DEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp ------------CCHHHHTTSCCTT--------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------------cccccceeeeccc--------------hHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 1222222222111 12234667899999999999999999887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.02 E-value=4.8 Score=37.08 Aligned_cols=44 Identities=14% Similarity=0.004 Sum_probs=39.0
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDY 86 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~ 86 (580)
+.|+++.|+++.... ++...|..+|..-+..|+++=|..+|++.
T Consensus 17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 578999999887655 67899999999999999999999999983
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=85.88 E-value=14 Score=33.16 Aligned_cols=36 Identities=6% Similarity=-0.185 Sum_probs=28.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHccCh------HHHHHHHHhhhh
Q 008039 53 LALSPRLELALELKARSLLYLRRF------KDVADMLQDYIP 88 (580)
Q Consensus 53 l~l~P~~~~~~~~rA~~l~~l~r~------~eAi~~~~~~l~ 88 (580)
|-++|.++..|..-...+-..|.. +..++.|++++.
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 457899999999998888888998 888899998773
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.09 E-value=2.6 Score=44.46 Aligned_cols=96 Identities=7% Similarity=-0.112 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCc---HHHHHH
Q 008039 248 TAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLAL---EPSC---IQALDT 321 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l---dP~~---~~A~~~ 321 (580)
..|..+++.|++++|++.|.++...+-. ......++.+.-.+++..++|..+...+.++-.+ .++. .+....
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAIS--TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 4499999999999999999999886422 3447788999999999999999999999998655 2221 233455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.|.++...++|.+|...|-.+..-
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhcc
Confidence 677888999999999988777443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=83.12 E-value=14 Score=34.02 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--hc---------------C
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL--AL---------------E 312 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al--~l---------------d 312 (580)
+..++-.|.|..++-++. .++ .....+..+.||.++++|..|+...+..| .+ |
T Consensus 40 ~I~LyyngEY~R~Lf~L~---~lN-------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 40 SIVLYLNGEYTRALFHLH---KLN-------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp HHHHHHTTCHHHHHHHHH---TCC-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred hhhhhhcchHhHHHHHHH---hcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 788899999999877654 331 56777788999999999999999999999 22 3
Q ss_pred CCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 313 PSCIQA-LDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 313 P~~~~A-~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.+.+- +..+|.++...|+.+||+..|......
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 444444 456799999999999999999876443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.06 E-value=38 Score=33.95 Aligned_cols=28 Identities=7% Similarity=-0.270 Sum_probs=23.5
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 008039 313 PSCIQALDTRALLLETIRCLPDCLHDLE 340 (580)
Q Consensus 313 P~~~~A~~~ra~~~~~lg~~~eAi~~~~ 340 (580)
-.++..|...|..|..-+++.+|...|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3678889999999999999999888774
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.68 E-value=2.5 Score=34.18 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=45.7
Q ss_pred cCCCcHHH--HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHh
Q 008039 311 LEPSCIQA--LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRV 388 (580)
Q Consensus 311 ldP~~~~A--~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~ 388 (580)
+||....| +..+|.-.-..|+|++|+..|..++++.-..+...+ ++. +...+..++.+...++..++..+
T Consensus 9 ~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~--d~~------~k~~lr~K~~eYl~RAE~LK~~l 80 (86)
T 4a5x_A 9 MDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTK--DNT------KRCNLREKISKYMDRAENIKKYL 80 (86)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC--CHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544433 455666667899999999999999998765554432 221 12235556777788888887644
Q ss_pred h
Q 008039 389 A 389 (580)
Q Consensus 389 ~ 389 (580)
.
T Consensus 81 ~ 81 (86)
T 4a5x_A 81 D 81 (86)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.41 E-value=3 Score=44.90 Aligned_cols=58 Identities=14% Similarity=0.026 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 285 YMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 285 ~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
+.++|....-...+..|..+|.+|+.++|++..+|..+|.+....|++-+|+-.|-++
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 3344444444444555555555555555555555555555555555555555555554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.46 E-value=11 Score=36.97 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=56.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA 318 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A 318 (580)
...+++.|+.++|+......|+. .|.++.+...+-..+.-.|+|+.|+..++.+.+++|+....
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~-----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA-----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 44678899999999999999996 56688888889999999999999999999999999988554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.19 E-value=3 Score=47.28 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQD 85 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~ 85 (580)
.++.-|+ ..|+++-|+.+..+|+.+.|..=..|..+|.||..+|+|+.|+-.+.-
T Consensus 342 ~Qa~FLl---~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 342 IQTNFLL---NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh---ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3444455 468999999999999999999999999999999999999999975543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.51 E-value=47 Score=33.62 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 008039 299 AESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDL 339 (580)
Q Consensus 299 ~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~ 339 (580)
.+||.+..+.=...-.+++.+...|..|.+.++|.+|...|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555544421223467888888888888888888887766
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.36 E-value=8.5 Score=40.38 Aligned_cols=104 Identities=12% Similarity=0.006 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+..+|..|+..|+++.|++.|.+.....+. +. ..+...+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------------------------------------~~-~kid~~l~~- 174 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------------------------------------TG-AKIDVMLTI- 174 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------------------------------------CC-SHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------------------------------hH-HHHHHHHHH-
Confidence 4677999999999999999999997754210 11 122223322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-GFLAECYMHRAFAYRSSGRIAESIADCNKTLAL 311 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~l 311 (580)
...++..++|..+...+.++-.+.+...+ .....+...-|..++..++|.+|-..|-.++..
T Consensus 175 ---------irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 175 ---------ARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ---------HHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 55677889999999999999765322222 223456667788889999999999999888755
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 580 | ||||
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-04 |
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 3e-04
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 9/135 (6%)
Query: 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309
+ A D + A+ FS + D + + Y + E+ +++
Sbjct: 12 GVLAADKKDWKGALDAFSAVQDPH--------SRICFNIGCMYTILKNMTEAEKAFTRSI 63
Query: 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEH-LKLLYNAILRDRKLPGPAWKRHNVRYR 368
+ A R +L + DL+ L L L D K+ G +K
Sbjct: 64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 123
Query: 369 EIPGKLCALTTKIQE 383
+ A + ++
Sbjct: 124 YNIAFMYAKKEEWKK 138
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 580 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.69 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.68 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.57 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.56 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.53 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.47 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.45 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.43 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.34 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.3 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 99.3 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 99.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 99.12 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.09 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.07 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.06 | |
| d1iura_ | 88 | Hypothetical protein KIAA0730 {Human (Homo sapiens | 99.05 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 99.04 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 99.04 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.03 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.02 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 98.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.95 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.94 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 98.8 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.57 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.31 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.95 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.58 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.96 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.78 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.32 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 82.54 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.6e-21 Score=191.92 Aligned_cols=245 Identities=11% Similarity=0.072 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCC
Q 008039 24 DKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSD 103 (580)
Q Consensus 24 ~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~ 103 (580)
...+..|..++ ..|++.+|+..|+++|+++|.++.+|..+|.++..+|++++|+.+|.+++ ++.|++
T Consensus 20 ~~~~~~g~~~~---~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~------- 86 (323)
T d1fcha_ 20 PQPFEEGLRRL---QEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL---ELKPDN------- 86 (323)
T ss_dssp SSHHHHHHHHH---HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC-------
T ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh---cccccc-------
Confidence 33567898888 79999999999999999999999999999999999999999999999966 333321
Q ss_pred chhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 008039 104 SSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQ 183 (580)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~ 183 (580)
...|+.+|.+|..+|++++|+..|+
T Consensus 87 -------------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~ 111 (323)
T d1fcha_ 87 -------------------------------------------------------QTALMALAVSFTNESLQRQACEILR 111 (323)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------ccccccccccccccccccccccchh
Confidence 1357889999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHc
Q 008039 184 TGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL-------LLRRRTAAIAALDA 256 (580)
Q Consensus 184 ~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~-------~~~~k~~G~~~~~~ 256 (580)
+++.+.+..... ............+.. ....... .........+...+..+.. ..-....|..++..
T Consensus 112 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 112 DWLRYTPAYAHL--VTPAEEGAGGAGLGP---SKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHTSTTTGGG--CC------------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred hHHHhccchHHH--HHhhhhhhhhccccc---chhhHHH-HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 998875321100 000000000000000 0000000 0000000011111111110 11234568999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHH
Q 008039 257 GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCL 336 (580)
Q Consensus 257 g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi 336 (580)
|++++|+..|.+++.. .|..+.+|+++|.++..+|++++|+..|.++|+++|+++.+|+.+|.+|..+|++++|+
T Consensus 186 ~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhhhccccccccc-----ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999997 44578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008039 337 HDLEHLKLLYN 347 (580)
Q Consensus 337 ~~~~~al~l~~ 347 (580)
..|++++++.+
T Consensus 261 ~~~~~al~l~p 271 (323)
T d1fcha_ 261 EHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 99999999964
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.3e-19 Score=180.23 Aligned_cols=205 Identities=17% Similarity=0.102 Sum_probs=174.5
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
.++....-+...+.... ..|++..|+..+.+++.++|.+..++..+|.++...|+|++|+..|++++. ..+.
T Consensus 164 ~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-- 235 (388)
T d1w3ba_ 164 TQPNFAVAWSNLGCVFN---AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS---LSPN-- 235 (388)
T ss_dssp HCTTCHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---HCTT--
T ss_pred cCcchhHHHHhhccccc---ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH---Hhhh--
Confidence 34445555556666555 678999999999999999999999999999999999999999999988542 1110
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
....++.+|.++...|++++
T Consensus 236 ------------------------------------------------------------~~~~~~~l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 236 ------------------------------------------------------------HAVVHGNLACVYYEQGLIDL 255 (388)
T ss_dssp ------------------------------------------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHCCCHHH
Confidence 11346779999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++++. |+...+...+ |..+...|
T Consensus 256 A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------~~~~~~~~ 285 (388)
T d1w3ba_ 256 AIDTYRRAIELQ--------------------------------------PHFPDAYCNL------------ANALKEKG 285 (388)
T ss_dssp HHHHHHHHHHTC--------------------------------------SSCHHHHHHH------------HHHHHHHS
T ss_pred HHHHHHHHHHhC--------------------------------------CCCHHHHHHH------------HHHHHHcC
Confidence 999999998762 5544443333 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
++.+|+..|..++.. .|....++..+|.++..+|++++|+..++++|+++|+++.+++.+|.++..+|++++|+.
T Consensus 286 ~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 286 SVAEAEDCYNTALRL-----CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp CHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CHHHHHHHHHhhhcc-----CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999997 455789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++++
T Consensus 361 ~~~~al~l 368 (388)
T d1w3ba_ 361 HYKEAIRI 368 (388)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999877
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3.3e-18 Score=172.77 Aligned_cols=245 Identities=14% Similarity=0.055 Sum_probs=162.9
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhh
Q 008039 28 RDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQ 107 (580)
Q Consensus 28 ~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~ 107 (580)
..|...+ ..|++++|+..|+++++.+|.++.++..+|.+++.+|+|++|+..|++++ +..|++
T Consensus 4 ~la~~~~---~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~----------- 66 (388)
T d1w3ba_ 4 ELAHREY---QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPLL----------- 66 (388)
T ss_dssp THHHHHH---HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTC-----------
T ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCC-----------
Confidence 4566666 68999999999999999999999999999999999999999999999966 333321
Q ss_pred HhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008039 108 QLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKR 187 (580)
Q Consensus 108 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~ 187 (580)
...|+.+|.+|..+|++++|+..+..+..
T Consensus 67 ---------------------------------------------------~~a~~~l~~~~~~~g~~~~A~~~~~~~~~ 95 (388)
T d1w3ba_ 67 ---------------------------------------------------AEAYSNLGNVYKERGQLQEAIEHYRHALR 95 (388)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHhhhhccccccccccccccc
Confidence 13578899999999999999999998887
Q ss_pred HHHHhhhhh-----hcccCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH-----HHHHHHHHH
Q 008039 188 LATAAFRRE-----SISLSDDSFPF--------SKFPVSNNHQTPPATPPRTMTESESVSQLLSHI-----KLLLRRRTA 249 (580)
Q Consensus 188 l~~~~~r~~-----~~~~~~d~~~~--------~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~-----k~~~~~k~~ 249 (580)
..+...... ........... ................................. .........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 175 (388)
T d1w3ba_ 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhh
Confidence 632110000 00000000000 000000000000000000000000000000000 001223344
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+...|++++|+..+.+++.+ .|....++.++|.++...|++++|+..+.+++.++|.+...++.+|.++...
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 250 (388)
T d1w3ba_ 176 GCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cccccccCcHHHHHHHHHHHHHh-----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHC
Confidence 77888888899999999888886 3446788888888888888888888888888888888888888888888888
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++++|+..|++++++
T Consensus 251 ~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 251 GLIDLAIDTYRRAIEL 266 (388)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888888776
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.9e-18 Score=174.46 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=169.4
Q ss_pred hhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-hHHHHHHHHhhhhhhhhcCCCC
Q 008039 19 NRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRR-FKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r-~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
+|+-.+-+-..+..+. ..+.+++|+.++++||+++|.+..+|..||.++..+++ +++|+..|++++ +.+|+
T Consensus 39 ~p~~~~a~~~~~~~~~---~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al---~~~p~-- 110 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQ---RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII---EEQPK-- 110 (315)
T ss_dssp CHHHHHHHHHHHHHHH---HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH---HHCTT--
T ss_pred CHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHH---HHHHh--
Confidence 4544444433443333 45789999999999999999999999999999999986 899999999965 33322
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
..++|+.+|.++..+|++++
T Consensus 111 ------------------------------------------------------------~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 111 ------------------------------------------------------------NYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp ------------------------------------------------------------CHHHHHHHHHHHHHHTCCTT
T ss_pred ------------------------------------------------------------hhhHHHHHhHHHHhhccHHH
Confidence 13578899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+.+|.++++++ |.+..+...+ |..+...|
T Consensus 131 Al~~~~kal~~d--------------------------------------p~n~~a~~~~------------~~~~~~~~ 160 (315)
T d2h6fa1 131 ELEFIADILNQD--------------------------------------AKNYHAWQHR------------QWVIQEFK 160 (315)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHHT
T ss_pred HHHHHhhhhhhh--------------------------------------hcchHHHHHH------------HHHHHHHH
Confidence 999999999873 5555444433 99999999
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR------IAESIADCNKTLALEPSCIQALDTRALLLETIRC 331 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~------~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~ 331 (580)
+|++|+..|.++|++ +|.+..+|++||.++..++. +++|+..+.++|.++|++..+|+.++.++... .
T Consensus 161 ~~~~Al~~~~~al~~-----~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~ 234 (315)
T d2h6fa1 161 LWDNELQYVDQLLKE-----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-G 234 (315)
T ss_dssp CCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-C
T ss_pred hhHHHHHHHHHHHHH-----CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-C
Confidence 999999999999998 45588999999999999887 57999999999999999999999999987654 4
Q ss_pred hhHHHHHHHHHHHH
Q 008039 332 LPDCLHDLEHLKLL 345 (580)
Q Consensus 332 ~~eAi~~~~~al~l 345 (580)
++++...+++++++
T Consensus 235 ~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 235 LSKYPNLLNQLLDL 248 (315)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 78999999999887
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=6.3e-18 Score=169.73 Aligned_cols=227 Identities=14% Similarity=0.109 Sum_probs=162.1
Q ss_pred cchhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 17 LSNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
..+|+.+.-|...|..++ ..|++..|+..|+++++++|.+...+..+|.++..+|++++|+++|++++ ...|..
T Consensus 47 ~~~P~~~~a~~~lg~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---~~~~~~ 120 (323)
T d1fcha_ 47 QQDPKHMEAWQYLGTTQA---ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL---RYTPAY 120 (323)
T ss_dssp HSCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTSTTT
T ss_pred HhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHH---Hhccch
Confidence 367777888888887777 68999999999999999999999999999999999999999999999965 333322
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCccccc-------chHHHHHHHHhhhccccccchhHHHHHHHHH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFS-------VSDLKKKVMAGLCRNCEKEGQWRYLVLGQAC 169 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~-------~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~ 169 (580)
.......... . .. .........+. ..+....+...+..+++....+.++.+|.++
T Consensus 121 ~~~~~~~~~~---------~-~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 121 AHLVTPAEEG---------A-GG--------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp GGGCC---------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHhhhhh---------h-hh--------cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 1110000000 0 00 00000000000 0111111222344455555567788999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 008039 170 CHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTA 249 (580)
Q Consensus 170 ~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~ 249 (580)
..+|++++|+..|++++.+. |+...+...+
T Consensus 183 ~~~~~~~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l------------ 212 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR--------------------------------------PNDYLLWNKL------------ 212 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------
T ss_pred HHHHHHhhhhcccccccccc--------------------------------------cccccchhhh------------
Confidence 99999999999999998762 4444443333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
|..++..|++++|+..|.+++++ .|.++.+|+++|.+|..+|++++|+..|.+||+++|++..++...
T Consensus 213 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 280 (323)
T d1fcha_ 213 GATLANGNQSEEAVAAYRRALEL-----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C
T ss_pred hhcccccccchhHHHHHHHHHHH-----hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh
Confidence 99999999999999999999997 345789999999999999999999999999999999987765443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-16 Score=161.24 Aligned_cols=174 Identities=9% Similarity=0.025 Sum_probs=153.0
Q ss_pred HHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCC
Q 008039 52 ALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRD 131 (580)
Q Consensus 52 Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 131 (580)
+|.++|....++.++|.++...+++++|++.|+++| +++|.+.
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai---~lnP~~~---------------------------------- 77 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI---ELNAANY---------------------------------- 77 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH---HHCTTCH----------------------------------
T ss_pred ccccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH---HHCCCCh----------------------------------
Confidence 467789999999999999999999999999999966 3444322
Q ss_pred CCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCC
Q 008039 132 PSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGL-MEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKF 210 (580)
Q Consensus 132 ~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~-~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l 210 (580)
.+|+.+|.++..+|. +++|+.++++++++.
T Consensus 78 ----------------------------~a~~~r~~~l~~l~~~~~eal~~~~~al~~~--------------------- 108 (315)
T d2h6fa1 78 ----------------------------TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--------------------- 108 (315)
T ss_dssp ----------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---------------------
T ss_pred ----------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---------------------
Confidence 368889999999885 899999999999873
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHH
Q 008039 211 PVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAF 290 (580)
Q Consensus 211 ~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~ 290 (580)
|++..+.... |.++...|+|++|+..|.++|++ .|.+..+|+++|.
T Consensus 109 -----------------p~~~~a~~~~------------~~~~~~l~~~~eAl~~~~kal~~-----dp~n~~a~~~~~~ 154 (315)
T d2h6fa1 109 -----------------PKNYQVWHHR------------RVLVEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQW 154 (315)
T ss_dssp -----------------TTCHHHHHHH------------HHHHHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred -----------------HhhhhHHHHH------------hHHHHhhccHHHHHHHHhhhhhh-----hhcchHHHHHHHH
Confidence 5555554444 99999999999999999999998 4558999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCC------hhHHHHHHHHHHHH
Q 008039 291 AYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRC------LPDCLHDLEHLKLL 345 (580)
Q Consensus 291 a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~------~~eAi~~~~~al~l 345 (580)
++..+|++++|+.+|+++|++||.+..+|+.||.++..++. +++|+..|.+++++
T Consensus 155 ~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~ 215 (315)
T d2h6fa1 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 215 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887 57899999999888
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=4.4e-16 Score=150.95 Aligned_cols=207 Identities=11% Similarity=-0.078 Sum_probs=153.0
Q ss_pred chhhhHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 18 SNRKIVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++++...-|+..|..+. ..|++++|+..|+++|+++|+++.+|..+|.++..+|++++|+.+|++++ +..|+++
T Consensus 32 ~~~~~a~~~~~~G~~y~---~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~ 105 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYD---SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL---ELDPTYN 105 (259)
T ss_dssp CHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCT
T ss_pred CCHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH---HHHhhhh
Confidence 46667777888888887 68999999999999999999999999999999999999999999999966 3333222
Q ss_pred CCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHH
Q 008039 98 GSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMED 177 (580)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~ee 177 (580)
..|+.+|.+|+.+|++++
T Consensus 106 --------------------------------------------------------------~a~~~lg~~~~~~g~~~~ 123 (259)
T d1xnfa_ 106 --------------------------------------------------------------YAHLNRGIALYYGGRDKL 123 (259)
T ss_dssp --------------------------------------------------------------HHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHHhhHHH
Confidence 357889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 008039 178 AMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAG 257 (580)
Q Consensus 178 Ai~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g 257 (580)
|+..|++++++. |........+ +......+
T Consensus 124 A~~~~~~al~~~--------------------------------------p~~~~~~~~~------------~~~~~~~~ 153 (259)
T d1xnfa_ 124 AQDDLLAFYQDD--------------------------------------PNDPFRSLWL------------YLAEQKLD 153 (259)
T ss_dssp HHHHHHHHHHHC--------------------------------------TTCHHHHHHH------------HHHHHHHC
T ss_pred HHHHHHHHHhhc--------------------------------------cccHHHHHHH------------HHHHHHhh
Confidence 999999999873 3333332222 44555555
Q ss_pred CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHH
Q 008039 258 LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLH 337 (580)
Q Consensus 258 ~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~ 337 (580)
....+.......... ++. .+....+...++. ....+.+..+...+..++.+.|....+++.+|.++..+|++++|+.
T Consensus 154 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 230 (259)
T d1xnfa_ 154 EKQAKEVLKQHFEKS-DKE-QWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 230 (259)
T ss_dssp HHHHHHHHHHHHHHS-CCC-STHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHhhcc-chh-hhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555544544443 121 1111111111111 1223346677777778888889999999999999999999999999
Q ss_pred HHHHHHHH
Q 008039 338 DLEHLKLL 345 (580)
Q Consensus 338 ~~~~al~l 345 (580)
.|++++.+
T Consensus 231 ~~~~al~~ 238 (259)
T d1xnfa_ 231 LFKLAVAN 238 (259)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHc
Confidence 99999766
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.64 E-value=3.3e-15 Score=135.43 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------cccHHHHHHHHHHHHHcCChHHHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------GFLAECYMHRAFAYRSSGRIAESIADCNK 307 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------~~~a~~~~nra~a~~~lg~~~eAl~~~~~ 307 (580)
++..+..+++.|+.+|+.|+|.+|+..|+++|.+.+.... +....+|+|+|.||+++|+|++|+.+|.+
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~ 92 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 92 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence 4556777888999999999999999999999987421111 12356899999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|+++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.63 E-value=1.1e-15 Score=142.68 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q 008039 244 LRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRA 323 (580)
Q Consensus 244 ~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra 323 (580)
..+++.|+.+|+.|+|++|+..|+++|.+ .|.++.+|+|+|.||.++|+|++|+.+|.+||.++|+++.+|+++|
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 45667799999999999999999999998 4558999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHHHH
Q 008039 324 LLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 324 ~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
.+|..+|+|++|+.+|++++++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999853
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.2e-15 Score=130.28 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTR 322 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~r 322 (580)
+..+++.|+.+++.|+|++|+..|+++|.. .|.++.+|+++|.||..+|++++|+.+|.++|.++|+++.+|+++
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 77 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK 77 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH
Confidence 455677899999999999999999999997 455899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHH
Q 008039 323 ALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 323 a~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++..+|++++|+.+|++++++
T Consensus 78 g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 78 AAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999877
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7.9e-15 Score=133.27 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
.++..++.+|+.+|+.|+|++|+..|+++|.+ .|.++.+|+++|.|++.+|++++|+.+|.++|+++|+++.+|+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~ 82 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 82 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc-----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHH
Confidence 45667778899999999999999999999998 4558999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|.++..+|+|++|+.+|++++.+
T Consensus 83 ~~g~~~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 83 RRAASNMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999988
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.5e-14 Score=131.90 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP----------QGFLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~----------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
++..+..+++.|+.+|+.|+|++|+..|+++|.+.+... ......+|.|+|.||+++|+|++|+.+|+++
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 455677788899999999999999999999999742211 1234678899999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++|+++.+++++|.+|..+|+|++|+.+|++++++
T Consensus 89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.57 E-value=2.9e-14 Score=131.00 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC----------CcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 239 HIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP----------QGFLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 239 ~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~----------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
++..+..+++.|+.+|+.|+|.+|+..|++||.+.+... .+....+|.|+|.||.++|+|.+|+.+|+++
T Consensus 11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a 90 (168)
T d1kt1a1 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence 455677888999999999999999999999998632111 1234678999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 309 LALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 309 l~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
|.++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999887
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=4.6e-14 Score=142.83 Aligned_cols=244 Identities=11% Similarity=-0.020 Sum_probs=165.3
Q ss_pred hhhhHHHHHHHHHHHHHhhChhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC----------hHHHHHHHHhhh
Q 008039 19 NRKIVDKYIRDARTLIATQEHSE-IASALSLLDAALALSPRLELALELKARSLLYLRR----------FKDVADMLQDYI 87 (580)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~d-~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r----------~~eAi~~~~~~l 87 (580)
...++..|......++.....++ .++|++.++++|+++|++..+|..|+.++..+++ +++|+.+|++++
T Consensus 21 ~~~k~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l 100 (334)
T d1dcea1 21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 44456666655555554444444 3899999999999999999999999999887665 789999999965
Q ss_pred hhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHH
Q 008039 88 PSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQ 167 (580)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~ 167 (580)
+..|.+. ..+..+..++..-. -.+..+.-......+..++.....| ++.+|.
T Consensus 101 ---~~~pk~~----------~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~al~~~~~~~~~~-~~~~~~ 152 (334)
T d1dcea1 101 ---RVNPKSY----------GTWHHRCWLLSRLP--------------EPNWARELELCARFLEADERNFHCW-DYRRFV 152 (334)
T ss_dssp ---HHCTTCH----------HHHHHHHHHHHTCS--------------SCCHHHHHHHHHHHHHHCTTCHHHH-HHHHHH
T ss_pred ---HhCCCcH----------HHHHHhhHHHHHhc--------------cccHHHHHHHHHHHHhhCchhhhhh-hhHHHH
Confidence 4444333 11111222211110 0011111112222333344433333 356788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 008039 168 ACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRR 247 (580)
Q Consensus 168 a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k 247 (580)
++...|.+++|+..+++++++ +|.+..+...+
T Consensus 153 ~~~~~~~~~~Al~~~~~~i~~--------------------------------------~p~~~~a~~~l---------- 184 (334)
T d1dcea1 153 AAQAAVAPAEELAFTDSLITR--------------------------------------NFSNYSSWHYR---------- 184 (334)
T ss_dssp HHHTCCCHHHHHHHHHTTTTT--------------------------------------TCCCHHHHHHH----------
T ss_pred HHHhccccHHHHHHHHHHHHc--------------------------------------CCCCHHHHHHH----------
Confidence 888889999999888877654 35555544443
Q ss_pred HHHHHHHHcCCHHHHHHHH------------------------------HHHHhccCCCCCcccHHHHHHHHHHHHHcCC
Q 008039 248 TAAIAALDAGLYSEAIRHF------------------------------SKIVDGRRGAPQGFLAECYMHRAFAYRSSGR 297 (580)
Q Consensus 248 ~~G~~~~~~g~y~eAi~~y------------------------------~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~ 297 (580)
|.++...|+|++|+..| .+++.. .|.....+.+++.++..+|+
T Consensus 185 --~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~~~ 257 (334)
T d1dcea1 185 --SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG-----RAEPLFRCELSVEKSTVLQS 257 (334)
T ss_dssp --HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS-----CCCCSSSCCCCHHHHHHHHH
T ss_pred --HHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHhh
Confidence 88899988876543333 333332 12233345567888888999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 298 IAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 298 ~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+.+|+..+.+++..+|++..+++.+|.++..+|++++|+.+|++++++
T Consensus 258 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=7.6e-13 Score=130.77 Aligned_cols=258 Identities=12% Similarity=-0.007 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCC
Q 008039 26 YIRDARTLIATQEHSEIASALSLLDAALALSPRL-----ELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSV 100 (580)
Q Consensus 26 ~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~-----~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~ 100 (580)
..-.|..++ ..|++++|+.+|+++|++.|.+ ..++..+|.+++.+|+|++|+..|++++......+
T Consensus 15 ~~lrA~~~~---~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~------ 85 (366)
T d1hz4a_ 15 NALRAQVAI---NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 85 (366)
T ss_dssp HHHHHHHHH---HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHH---HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence 333455555 6899999999999999999987 35788899999999999999999999763211100
Q ss_pred CCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHH
Q 008039 101 SSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMV 180 (580)
Q Consensus 101 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~ 180 (580)
......+.++.+|.++...|++..|+.
T Consensus 86 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~ 112 (366)
T d1hz4a_ 86 -----------------------------------------------------VWHYALWSLIQQSEILFAQGFLQTAWE 112 (366)
T ss_dssp -----------------------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123467789999999999999999
Q ss_pred HHHHHHHHHHHhhhhhh----cccCCCCCCCCCCCCCCCCC----CCCCCCCCCC-CChHHHH-----------------
Q 008039 181 LLQTGKRLATAAFRRES----ISLSDDSFPFSKFPVSNNHQ----TPPATPPRTM-TESESVS----------------- 234 (580)
Q Consensus 181 ~l~~al~l~~~~~r~~~----~~~~~d~~~~~~l~~~~~~~----~~~~~~~~~d-Pd~~~~~----------------- 234 (580)
.+.+++.+.+....... .....-.......+...... .......... +......
T Consensus 113 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 192 (366)
T d1hz4a_ 113 TQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 192 (366)
T ss_dssp HHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999877532110000 00000000000000000000 0000000000 0000000
Q ss_pred HHHHHHHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHH
Q 008039 235 QLLSHIKL------------LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESI 302 (580)
Q Consensus 235 ~ll~~~k~------------~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl 302 (580)
..+..... .......|..+...|++++|+..|.+++.. .+...+.....+.++|.++..+|++++|+
T Consensus 193 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 271 (366)
T d1hz4a_ 193 SQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAE 271 (366)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00000000 011234577788889999999999999886 34445667788999999999999999999
Q ss_pred HHHHHHHh------cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 303 ADCNKTLA------LEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 303 ~~~~~Al~------ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
..+++++. ..|....++..+|.+|..+|++++|+..|++++++.
T Consensus 272 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 99999984 456778899999999999999999999999999884
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.53 E-value=1.1e-13 Score=126.88 Aligned_cols=105 Identities=16% Similarity=0.231 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----------CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRG-----------APQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~-----------~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
.....++..|+.++..|+|.+|+..|+++|.+.+. ...|....+|+|+|.||.++|+|++|+.+|++||
T Consensus 25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al 104 (169)
T d1ihga1 25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 104 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence 34556788899999999999999999999875210 1135578899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 310 ALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 310 ~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+++|+++++|+++|.+|..+|+|++|+.+|++++++
T Consensus 105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.6e-14 Score=126.82 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH----
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI---- 316 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~---- 316 (580)
+++.+.++.|+.+|..|+|++|+.+|+++|++ .|.+..+++|+|.||..+|+|++|+.+|+++|.++|++.
T Consensus 2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~ 76 (128)
T d1elra_ 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence 45677888899999999999999999999998 345889999999999999999999999999999998874
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 317 ---QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 317 ---~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.+|+++|.++..+++|++|+..|++++.+
T Consensus 77 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 57777888888999999999999998766
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=4.1e-13 Score=126.10 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
+.++..|..++..|+++.|+..|.++. +|. . ..+++.
T Consensus 6 ~~l~~~g~~~~~~~d~~~Al~~~~~i~----------------------------------------~~~-~--~~~~nl 42 (192)
T d1hh8a_ 6 ISLWNEGVLAADKKDWKGALDAFSAVQ----------------------------------------DPH-S--RICFNI 42 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----------------------------------------SCC-H--HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcC----------------------------------------CCC-H--HHHHHH
Confidence 456678999999999999999887421 122 2 233444
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC---- 315 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~---- 315 (580)
|.+++..|+|++|+..|++||++ .|..+.+|+++|.||..+|++++|+.+|++||...|.+
T Consensus 43 ----------G~~~~~~g~~~~A~~~~~kAl~l-----dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~ 107 (192)
T d1hh8a_ 43 ----------GCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 107 (192)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred ----------HHHHHHcCCchhHHHHHHHHHHH-----hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH
Confidence 99999999999999999999998 45589999999999999999999999999999876643
Q ss_pred ------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 316 ------------IQALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 316 ------------~~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
.++++++|.++..+|++++|+..|++++.+
T Consensus 108 ~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 108 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 578999999999999999999999999766
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=6.9e-13 Score=114.21 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+...|..++..|++++|+..|++++.++ |+...+...+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~--------------------------------------p~~~~~~~~~---- 43 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD--------------------------------------PHNHVLYSNR---- 43 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------------------Ccchhhhhcc----
Confidence 4567999999999999999999999873 5555544444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.++++.|+|++|+..|.++|.+ .|.++.+|+++|.++..+|++++|+.+|.++++++|+++.++..
T Consensus 44 --------a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 110 (117)
T d1elwa_ 44 --------SAAYAKKGDYQKAYEDGCKTVDL-----KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 110 (117)
T ss_dssp --------HHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred --------cccccccccccccchhhhhHHHh-----ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999998 45588999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 008039 322 RALLLE 327 (580)
Q Consensus 322 ra~~~~ 327 (580)
++.+..
T Consensus 111 l~~l~~ 116 (117)
T d1elwa_ 111 LQNMEA 116 (117)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=4.4e-13 Score=133.42 Aligned_cols=215 Identities=12% Similarity=0.083 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALS------PRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDD 96 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~------P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~ 96 (580)
++-|.+.|..+- ..++|.+|++.|.+|+++. |....+|...|.||..+|++++|++.|++++......+.
T Consensus 37 a~~y~~aa~~y~---~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~- 112 (290)
T d1qqea_ 37 ADLCVQAATIYR---LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ- 112 (290)
T ss_dssp HHHHHHHHHHHH---HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHH---HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-
Confidence 344444444333 5789999999999999983 445678999999999999999999999997733221100
Q ss_pred CCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHh-cCCH
Q 008039 97 SGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCH-LGLM 175 (580)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~-lG~~ 175 (580)
. ....-.+..+|.+|.. +|++
T Consensus 113 ~----------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~ 134 (290)
T d1qqea_ 113 F----------------------------------------------------------RRGANFKFELGEILENDLHDY 134 (290)
T ss_dssp H----------------------------------------------------------HHHHHHHHHHHHHHHHTTCCH
T ss_pred c----------------------------------------------------------hhHHHHHHHHHHhHhhHHHHH
Confidence 0 0001246678888865 7999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHHHHH
Q 008039 176 EDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESES-VSQLLSHIKLLLRRRTAAIAAL 254 (580)
Q Consensus 176 eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~-~~~ll~~~k~~~~~k~~G~~~~ 254 (580)
++|+.+|++++.+.+.. ..... ...+.. .|..+.
T Consensus 135 ~~A~~~~~~A~~l~~~~-----------------------------------~~~~~~~~~~~~----------la~~~~ 169 (290)
T d1qqea_ 135 AKAIDCYELAGEWYAQD-----------------------------------QSVALSNKCFIK----------CADLKA 169 (290)
T ss_dssp HHHHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----------------------------------CchhhhhhHHHH----------HHHHHH
Confidence 99999999999885320 11111 122222 399999
Q ss_pred HcCCHHHHHHHHHHHHhccCCC--CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHH
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGA--PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQA-----LDTRALLLE 327 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~--~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A-----~~~ra~~~~ 327 (580)
..|+|.+|+..|.+++...... ........+++.+.++...|++..|...++++++++|.+... +..+..++.
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 9999999999999999973221 122234678899999999999999999999999999987654 344555655
Q ss_pred h--cCChhHHHHHHHHHHH
Q 008039 328 T--IRCLPDCLHDLEHLKL 344 (580)
Q Consensus 328 ~--lg~~~eAi~~~~~al~ 344 (580)
. .+.+++|+.+|.++.+
T Consensus 250 ~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp TTCTTTHHHHHHHHTTSSC
T ss_pred hcCHHHHHHHHHHHHHHhh
Confidence 4 4669999999987633
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=7.5e-13 Score=131.69 Aligned_cols=191 Identities=12% Similarity=0.024 Sum_probs=144.6
Q ss_pred ChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhh
Q 008039 38 EHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLL 117 (580)
Q Consensus 38 ~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll 117 (580)
..++|++|.++|.+| |.+|..+|+|++|+++|.+++.......+.
T Consensus 29 ~~~~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~--------------------- 73 (290)
T d1qqea_ 29 DSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNE--------------------- 73 (290)
T ss_dssp SHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------------------
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------------------
Confidence 356789998888876 889999999999999999977321111000
Q ss_pred cCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhh
Q 008039 118 HSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRES 197 (580)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~ 197 (580)
....-.|..+|.+|..+|++++|+..|++++++.+..
T Consensus 74 --------------------------------------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~----- 110 (290)
T d1qqea_ 74 --------------------------------------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR----- 110 (290)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-----
Confidence 0011257789999999999999999999999885320
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCC
Q 008039 198 ISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALD-AGLYSEAIRHFSKIVDGRRGA 276 (580)
Q Consensus 198 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~-~g~y~eAi~~y~~AL~~~~~~ 276 (580)
......... +...|..+.. .|+|++|+.+|.+++++....
T Consensus 111 ------------------------------~~~~~~~~~---------~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~ 151 (290)
T d1qqea_ 111 ------------------------------GQFRRGANF---------KFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (290)
T ss_dssp ------------------------------TCHHHHHHH---------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------------ccchhHHHH---------HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 111211111 2223777766 599999999999999873221
Q ss_pred -CCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHH
Q 008039 277 -PQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCI-------QALDTRALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 277 -~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~-------~A~~~ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
..+....++.++|.++..+|+|++|+..|.+++.+.|... ..++..|.++...|+++.|...|++++++
T Consensus 152 ~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1234567899999999999999999999999999987763 45688899999999999999999999665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.4e-12 Score=116.50 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|..|+..|++++|+..|+++++++ |++......+
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~--------------------------------------p~~~~~~~~l--- 50 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN--------------------------------------PSNAIYYGNR--- 50 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc--------------------------------------hhhhhhhhhh---
Confidence 45678999999999999999999999883 5555544443
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.+++..|++++|+..|.++|++ .|.+..+|+++|.++..+|++++|+.++.+++.++|++..++.
T Consensus 51 ---------g~~~~~~~~~~~A~~~~~kal~~-----~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~ 116 (159)
T d1a17a_ 51 ---------SLAYLRTECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116 (159)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred ---------HHHHHhccccchHHHHHHHHHHH-----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999998 4558899999999999999999999999999999999999998
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHHH
Q 008039 321 TRALLLE--TIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~--~lg~~~eAi~~~~~al~l 345 (580)
.++.+.. ..+.+++|+...+....+
T Consensus 117 ~l~~~~~~~~~~~~~~a~~~~~~~~~~ 143 (159)
T d1a17a_ 117 KYQECNKIVKQKAFERAIAGDEHKRSV 143 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHh
Confidence 8887754 445577776655544333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=6.8e-13 Score=127.94 Aligned_cols=130 Identities=15% Similarity=0.021 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 008039 158 GQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLL 237 (580)
Q Consensus 158 ~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll 237 (580)
....|+.+|.+|+.+|++++|+..|+++++++ |++..+...+
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--------------------------------------p~~~~a~~~l 77 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR--------------------------------------PDMPEVFNYL 77 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--------------------------------------CCCHHHHhhh
Confidence 34568899999999999999999999999883 5555554433
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHH
Q 008039 238 SHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQ 317 (580)
Q Consensus 238 ~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~ 317 (580)
|.++...|+|++|+..|.+++.+ .|.++.+++++|.++..+|++++|+..+.++++++|++..
T Consensus 78 ------------g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 140 (259)
T d1xnfa_ 78 ------------GIYLTQAGNFDAAYEAFDSVLEL-----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 140 (259)
T ss_dssp ------------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------------chHHHHHHHHHHhhhhhhHHHHH-----HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH
Confidence 99999999999999999999998 3457789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 008039 318 ALDTRALLLETIRCLPDCLHDLEHL 342 (580)
Q Consensus 318 A~~~ra~~~~~lg~~~eAi~~~~~a 342 (580)
.+..++.++..++..+.+.......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 141 RSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 9999999888888766665554444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=6.1e-13 Score=124.88 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
++.++..+|..++..|+|++|++.|.++.. .++.+|+|+|.+|..+|++++|+.+|++||++||+++.+|++
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~~--------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~ 75 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ 75 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence 455666779999999999999999986422 257889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHH
Q 008039 322 RALLLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~lg~~~eAi~~~~~al~l 345 (580)
+|.++..+|+|++|+.+|++++..
T Consensus 76 ~g~~~~~~g~~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 76 RGMLYYQTEKYDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999876
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.39 E-value=1.1e-12 Score=112.20 Aligned_cols=89 Identities=15% Similarity=0.109 Sum_probs=85.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+++.|+|.+|+..|+++|.. .|.++.+|+++|.++..+|++++|+.++.++|+++|++..+++.+|.+|..+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc-----ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 99999999999999999999997 4558999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLK 343 (580)
Q Consensus 330 g~~~eAi~~~~~al 343 (580)
|++++|+..|++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999974
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.2e-11 Score=113.51 Aligned_cols=136 Identities=17% Similarity=0.057 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|..++..|++++|+..|++++.+.+. .. ........ ....+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~------------~~---------------------~~~~~~~~-~~~~~ 60 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEY------------ES---------------------SFSNEEAQ-KAQAL 60 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------------CC---------------------CCCSHHHH-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh------------cc---------------------ccchHHHh-hhchh
Confidence 3567899999999999999999999987321 00 00111111 11111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
....+...|.++++.|+|++|+..|+++|.+ .|.++.+|+++|.||..+|+|++|+.+|.+++.++|++..+..
T Consensus 61 -~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~ 134 (170)
T d1p5qa1 61 -RLASHLNLAMCHLKLQAFSAAIESCNKALEL-----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 134 (170)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhcccccchhhhhhhc-----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 1122345699999999999999999999998 4558999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHH
Q 008039 321 TRALLLETIRCLPDCL 336 (580)
Q Consensus 321 ~ra~~~~~lg~~~eAi 336 (580)
.++.++..++.+.+..
T Consensus 135 ~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 135 QLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998887777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.35 E-value=1.7e-11 Score=112.08 Aligned_cols=134 Identities=13% Similarity=-0.003 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+.-.|..+|..|++++|+..|++++.+.+. . ......... .. ..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~------------~---------------------~~~~~~~~~-~~-~~ 61 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEM------------E---------------------YGLSEKESK-AS-ES 61 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT------------C---------------------CSCCHHHHH-HH-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------h---------------------hccchhhhh-hc-ch
Confidence 3556899999999999999999999977321 0 001111111 11 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
....-+...|.++++.|+|.+|+..|+++|.+ .|.+..+|+++|.|+..+|+|++|+.+|.+++.++|++..++.
T Consensus 62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l-----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~ 136 (168)
T d1kt1a1 62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 136 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred hHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12223445699999999999999999999998 4558999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhH
Q 008039 321 TRALLLETIRCLPD 334 (580)
Q Consensus 321 ~ra~~~~~lg~~~e 334 (580)
.++.+...++.+.+
T Consensus 137 ~l~~~~~~~~~~~e 150 (168)
T d1kt1a1 137 QIFMCQKKAKEHNE 150 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 99999988877765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=7.4e-14 Score=141.30 Aligned_cols=231 Identities=10% Similarity=-0.011 Sum_probs=155.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC--hHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhh
Q 008039 39 HSEIASALSLLDAALALSPRLELALELKARSLLYLRR--FKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKL 116 (580)
Q Consensus 39 ~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r--~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 116 (580)
.|++.+|+.+|+++|.++|.+..+|..+|.++..+++ +++|+..|.+++ ...|.+... ........
T Consensus 86 ~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al---~~~~~~~~~---------~~~~~~~~ 153 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL---EADERNFHC---------WDYRRFVA 153 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH---HHCTTCHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH---hhCchhhhh---------hhhHHHHH
Confidence 4678999999999999999999999999999999887 799999999965 444433211 00111111
Q ss_pred hcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhh
Q 008039 117 LHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRE 196 (580)
Q Consensus 117 l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~ 196 (580)
...... ....-+-+-..+..+ +...+.|+.+|.++..+|++++|+..+++++.+.+.....-
T Consensus 154 ~~~~~~----------------~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 215 (334)
T d1dcea1 154 AQAAVA----------------PAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV 215 (334)
T ss_dssp HHTCCC----------------HHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH
T ss_pred HHhccc----------------cHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH
Confidence 111000 000000111122223 34456788899999999999999999999888865422111
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 008039 197 SISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKL----LLRRRTAAIAALDAGLYSEAIRHFSKIVDG 272 (580)
Q Consensus 197 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~----~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~ 272 (580)
..... .+|.......+...+.. .......|..+...|++.+|+..|.+++..
T Consensus 216 ~~~~~------------------------l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 216 QNAFF------------------------TDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp HHHHH------------------------HCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHH------------------------hcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 00000 00111111111100000 000012377888899999999999999996
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 008039 273 RRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLET 328 (580)
Q Consensus 273 ~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~ 328 (580)
.|.+..+++++|.++..+|++++|+.+|++++++||.+...|..++..+..
T Consensus 272 -----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 -----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp -----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred -----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 566899999999999999999999999999999999999999999888875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.33 E-value=1.6e-11 Score=110.59 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|..+|..|++++|+..|++++.+.+. .. ..+....... ...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~----------~~-----------------------~~~~~~~~~~-~~~ 64 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIH----------TE-----------------------EWDDQILLDK-KKN 64 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT----------CT-----------------------TCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc----------hh-----------------------hhhhHHHHHh-hhh
Confidence 3566899999999999999999999976210 00 0011111111 111
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
..+.-+...|.++++.|+|++|+..|+++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.+++.++|++..+..
T Consensus 65 ~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~-----~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~ 139 (153)
T d2fbna1 65 IEISCNLNLATCYNKNKDYPKAIDHASKVLKI-----DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 139 (153)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHhcccchhhhhhhccccc-----cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12334456799999999999999999999998 4558899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 008039 321 TRALLLETIR 330 (580)
Q Consensus 321 ~ra~~~~~lg 330 (580)
.++.+...++
T Consensus 140 ~l~~~~~kl~ 149 (153)
T d2fbna1 140 SYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888876554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.32 E-value=6.5e-12 Score=113.42 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCC-------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAP-------QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEP-- 313 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~-------~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP-- 313 (580)
.......|+.++..|+|++|+..|+++|++.+..+ .+..+.+|+|+|.||..+|+|++|+.+|+++|.+.|
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 33444559999999999999999999999742211 122468999999999999999999999999998754
Q ss_pred ---------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q 008039 314 ---------SCIQALDTRALLLETIRCLPDCLHDLEHLKLLYN 347 (580)
Q Consensus 314 ---------~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~~ 347 (580)
....+|+++|.+|..+|++++|+.+|++++++.+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2466899999999999999999999999999963
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=1.8e-12 Score=120.23 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
.+...|..++..|++++|+..|++++.++ |.+..+...+
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--------------------------------------p~~~~~~~~l--- 44 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN--------------------------------------PLVAVYYTNR--- 44 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------SCCHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------------------CCCHHHHHhH---
Confidence 45678999999999999999999999873 5555544443
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
|.++++.|+|++|+..|.++|.+ .|.+..+|+++|.+|..+|+|++|+.+|.+++.++|++...+.
T Consensus 45 ---------g~~y~~~~~~~~Ai~~~~~al~l-----~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 110 (201)
T d2c2la1 45 ---------ALCYLKMQQPEQALADCRRALEL-----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (201)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHTTS-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ---------HHHHhhhhhhhhhhHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 99999999999999999999998 4558899999999999999999999999999999987654444
Q ss_pred HHHH
Q 008039 321 TRAL 324 (580)
Q Consensus 321 ~ra~ 324 (580)
..+.
T Consensus 111 ~~~~ 114 (201)
T d2c2la1 111 DDIP 114 (201)
T ss_dssp SHHH
T ss_pred HHHH
Confidence 3333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.30 E-value=2.7e-11 Score=110.52 Aligned_cols=135 Identities=12% Similarity=0.038 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
+...|..++..|++++|+..|++++.+.+...... ...... .....
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~--------------------------------~~~~~~--~~~~~ 75 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAA--------------------------------EDADGA--KLQPV 75 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS--------------------------------CHHHHG--GGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhh--------------------------------hhHHHH--HhChh
Confidence 45679999999999999999999998753311100 000000 00011
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
.+..+...|.++++.|+|++||..|+++|++ .|.++.+|+++|.+|..+|++++|+.+|.++++++|++..++..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~ 150 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhh-----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1222334499999999999999999999998 45589999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHH
Q 008039 322 RALLLETIRCLPDC 335 (580)
Q Consensus 322 ra~~~~~lg~~~eA 335 (580)
++.+...+..+.++
T Consensus 151 l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 151 LLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998777666554
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.4e-12 Score=102.03 Aligned_cols=66 Identities=18% Similarity=0.414 Sum_probs=54.9
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIM 474 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~ 474 (580)
..|||.+|||.++++..+|+++|+++++++|||+++... .++..|..|++||++ ++++.
T Consensus 2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~--------------------~~~~~f~~i~~Ay~v-L~d~~ 60 (75)
T d1xbla_ 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--------------------EAEAKFKEIKEAYEV-LTDSQ 60 (75)
T ss_dssp CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTC--------------------HHHHHHHHHHHHHHH-TTSSH
T ss_pred CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCCh--------------------HHHHHHHHHHHHHHh-cCCHH
Confidence 469999999999999999999999999999999976532 456789999999995 56666
Q ss_pred hHHHHHH
Q 008039 475 DEEAAEK 481 (580)
Q Consensus 475 ~~~~~~~ 481 (580)
.+..+.+
T Consensus 61 ~R~~YD~ 67 (75)
T d1xbla_ 61 KRAAYDQ 67 (75)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=4.4e-12 Score=104.90 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=58.7
Q ss_pred CCccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 393 TGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 393 ~~~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
....|||.+|||.++++..+|+++|++++++|||||+..... ...+..++..|+.|++||++ +++
T Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~--------------~~~~~~a~~~f~~I~~Ay~v-L~d 77 (94)
T d1wjza_ 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVP--------------AGTMEECMQKFIEIDQAWKI-LGN 77 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCC--------------HHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccch--------------HHHHHHHHHHHHHHHHHHHH-hCC
Confidence 456799999999999999999999999999999999765322 12457889999999999995 555
Q ss_pred hhhHHHHH
Q 008039 473 IMDEEAAE 480 (580)
Q Consensus 473 ~~~~~~~~ 480 (580)
+..+..+.
T Consensus 78 ~~~R~~YD 85 (94)
T d1wjza_ 78 EETKKKYD 85 (94)
T ss_dssp SSHHHHHH
T ss_pred HHHHHHHH
Confidence 65444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=4.7e-12 Score=135.98 Aligned_cols=89 Identities=13% Similarity=0.033 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLETI 329 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~l 329 (580)
|..+.+.|++.+|+..|.+++... ...++.++|.++...|+|++|+.+|.+|+.++|++..+|+.+|.++...
T Consensus 127 g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~ 199 (497)
T d1ya0a1 127 GIISNKQTHTSAIVKPQSSSCSYI-------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK 199 (497)
T ss_dssp ----------------CCHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence 888888899999999888888862 3467888899999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHH
Q 008039 330 RCLPDCLHDLEHLKLL 345 (580)
Q Consensus 330 g~~~eAi~~~~~al~l 345 (580)
|++.+|+..|.+++.+
T Consensus 200 ~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 200 GDHLTTIFYYCRSIAV 215 (497)
T ss_dssp TCHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999988665
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=6.7e-11 Score=102.64 Aligned_cols=112 Identities=12% Similarity=0.024 Sum_probs=89.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 008039 165 LGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLL 244 (580)
Q Consensus 165 LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~ 244 (580)
|...+...+++++|.+.|++++.++ |++..+...+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~--------------------------------------p~~~~~~~n~------- 39 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG--------------------------------------SVSKSTQFEY------- 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--------------------------------------CCCHHHHHHH-------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC--------------------------------------CCCHHHHHHH-------
Confidence 5677888899999999999999873 5555555444
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 245 RRRTAAIAALDA---GLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 245 ~~k~~G~~~~~~---g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|.++++. +++.+||..|++++.. +| .+....+|+++|.+|..+|+|++|+.+|+++|+++|++..|+..
T Consensus 40 -----a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~--~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 40 -----AWCLVRTRYNDDIRKGIVLLEELLPK-GS--KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp -----HHHHTTSSSHHHHHHHHHHHHHHTTT-SC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----HHHHHHhcchHHHHHHHHHHHHHHhc-cC--CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 8888764 4566799999999985 22 23345689999999999999999999999999999999999988
Q ss_pred HHHHHHhc
Q 008039 322 RALLLETI 329 (580)
Q Consensus 322 ra~~~~~l 329 (580)
++.+...+
T Consensus 112 ~~~I~~~~ 119 (122)
T d1nzna_ 112 ERLIDKAM 119 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.9e-09 Score=105.71 Aligned_cols=185 Identities=14% Similarity=0.017 Sum_probs=144.0
Q ss_pred CcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccc
Q 008039 58 RLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCF 137 (580)
Q Consensus 58 ~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 137 (580)
-++.+..++|.+++..|++++|+.+|++++ ...|.+.
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL---~~~~~~~---------------------------------------- 46 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLAL---EELPPGW---------------------------------------- 46 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTCCTTC----------------------------------------
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hhCcCCC----------------------------------------
Confidence 356788889999999999999999999965 3333221
Q ss_pred cchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCC
Q 008039 138 SVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQ 217 (580)
Q Consensus 138 ~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~ 217 (580)
......++..+|.+|+.+|++++|+..|++++++.+..
T Consensus 47 -----------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~------------------------- 84 (366)
T d1hz4a_ 47 -----------------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH------------------------- 84 (366)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------------------------
T ss_pred -----------------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-------------------------
Confidence 00112357789999999999999999999999886420
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC---CCCCcccHHHHHHHHHHHHH
Q 008039 218 TPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR---GAPQGFLAECYMHRAFAYRS 294 (580)
Q Consensus 218 ~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~---~~~~~~~a~~~~nra~a~~~ 294 (580)
+........+... |..+...|++..|+..|.+++.+.. ....+....++.++|.++..
T Consensus 85 ---------~~~~~~~~~~~~~----------~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 145 (366)
T d1hz4a_ 85 ---------DVWHYALWSLIQQ----------SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 145 (366)
T ss_dssp ---------TCHHHHHHHHHHH----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred ---------cchHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH
Confidence 0111222233333 8999999999999999999988631 12234456788899999999
Q ss_pred cCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 295 SGRIAESIADCNKTLALEPS-----CIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 295 lg~~~eAl~~~~~Al~ldP~-----~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+|+++.++..+.+++...+. ...++...+.++...+++.++...+.++..+.
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 202 (366)
T d1hz4a_ 146 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 202 (366)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999987654 46788999999999999999999999998874
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=5.1e-11 Score=94.71 Aligned_cols=64 Identities=33% Similarity=0.485 Sum_probs=53.9
Q ss_pred cchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCchhh
Q 008039 396 VDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNIMD 475 (580)
Q Consensus 396 ~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~~~ 475 (580)
+|||.+|||.++++..+|+++|+++++++|||+.... .+.+.|+.|++||+ +++++..
T Consensus 3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~---------------------~~~~~~~~i~~Ay~-vLsdp~~ 60 (77)
T d1hdja_ 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP---------------------GAEEKFKEIAEAYD-VLSDPRK 60 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT---------------------THHHHHHHHHHHHH-HTTCHHH
T ss_pred CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch---------------------hHHHHHHHHHHHHH-HhcCHHH
Confidence 5899999999999999999999999999999997652 34567999999999 5667775
Q ss_pred HHHHHH
Q 008039 476 EEAAEK 481 (580)
Q Consensus 476 ~~~~~~ 481 (580)
+..+.+
T Consensus 61 R~~YD~ 66 (77)
T d1hdja_ 61 REIFDR 66 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.6e-10 Score=93.22 Aligned_cols=80 Identities=11% Similarity=0.041 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCC--CCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRG--APQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLLE 327 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~--~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~ 327 (580)
|..+++.|+|.+|+..|++|+.+.+. ...+..+.+|.|+|.|+.++|++++|+..++++|+++|+++.++.+++.+..
T Consensus 12 G~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999999999999999997422 2244568999999999999999999999999999999999999999987765
Q ss_pred hc
Q 008039 328 TI 329 (580)
Q Consensus 328 ~l 329 (580)
.+
T Consensus 92 ~l 93 (95)
T d1tjca_ 92 IM 93 (95)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.4e-10 Score=97.35 Aligned_cols=91 Identities=9% Similarity=-0.062 Sum_probs=82.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCc--HHHHHHHHH
Q 008039 250 AIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR---IAESIADCNKTLALEPSC--IQALDTRAL 324 (580)
Q Consensus 250 G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~---~~eAl~~~~~Al~ldP~~--~~A~~~ra~ 324 (580)
++.++..++|++|.+.|.++|.+ .|.++.+++|+|.|+++.++ +.+|+..|+++|..+|.. ..+++.+|.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 78899999999999999999997 45589999999999987554 557999999999998766 569999999
Q ss_pred HHHhcCChhHHHHHHHHHHHH
Q 008039 325 LLETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 325 ~~~~lg~~~eAi~~~~~al~l 345 (580)
+|..+|+|++|+..|++++++
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999999998
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=8.2e-10 Score=95.99 Aligned_cols=106 Identities=12% Similarity=0.119 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCC
Q 008039 22 IVDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVS 101 (580)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~ 101 (580)
....+...|..++ ..|+|.+|+..|+++|+++|.++.++.++|.+|+.+|+|++|+.+|+++| .+.|.+....
T Consensus 3 ~a~~~k~~G~~~~---~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~l~~~~~~~~- 75 (128)
T d1elra_ 3 QALKEKELGNDAY---KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI---EVGRENREDY- 75 (128)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHHHHSTTCH-
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH---HhCcccHHHH-
Confidence 4456677888888 68999999999999999999999999999999999999999999999976 3333222110
Q ss_pred CCchhhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHH
Q 008039 102 SDSSSQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVL 181 (580)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~ 181 (580)
. ...+.|+.+|.++..++++++|+.+
T Consensus 76 -------------------------------------------~-----------~~a~~~~~lg~~~~~~~~~~~A~~~ 101 (128)
T d1elra_ 76 -------------------------------------------R-----------QIAKAYARIGNSYFKEEKYKDAIHF 101 (128)
T ss_dssp -------------------------------------------H-----------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------------------H-----------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 0 0013688899999999999999999
Q ss_pred HHHHHHH
Q 008039 182 LQTGKRL 188 (580)
Q Consensus 182 l~~al~l 188 (580)
|++++.+
T Consensus 102 ~~kal~~ 108 (128)
T d1elra_ 102 YNKSLAE 108 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999865
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=7.8e-11 Score=95.66 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=50.6
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSV 469 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l 469 (580)
..++|.+|||..+++.++|++|||+++++||||++++.. ..|.+.|+.|++||++|
T Consensus 15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~-------------------~~a~~~f~~i~~Ay~~L 70 (88)
T d1iura_ 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENH-------------------DIANEVFKHLQNEINRL 70 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCH-------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchh-------------------hHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999999987632 46789999999999976
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.3e-10 Score=92.08 Aligned_cols=66 Identities=18% Similarity=0.287 Sum_probs=52.9
Q ss_pred cchhhhhcccCCCC--HHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCch
Q 008039 396 VDYYALIGLRRGCS--RSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSNI 473 (580)
Q Consensus 396 ~d~y~iLgv~~~a~--~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~~ 473 (580)
.|||++|||..+++ .++|+++|++++.++|||+..+.... .+..+...|..|++||++| +++
T Consensus 1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~---------------~~~~a~~~~~~i~~Ay~vL-~dp 64 (76)
T d1fpoa1 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQA---------------EQLAAVQQSATINQAWQTL-RHP 64 (76)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHH---------------HHHHHHHHHHHHHHHHHHH-HSH
T ss_pred CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHH---------------HHHHHHHHHHHHHHHHHHh-CCH
Confidence 38999999998654 89999999999999999997654322 4567889999999999965 556
Q ss_pred hhHH
Q 008039 474 MDEE 477 (580)
Q Consensus 474 ~~~~ 477 (580)
..+.
T Consensus 65 ~~R~ 68 (76)
T d1fpoa1 65 LMRA 68 (76)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5333
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=99.04 E-value=3.3e-11 Score=103.34 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=45.6
Q ss_pred ccchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Q 008039 395 NVDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMS 471 (580)
Q Consensus 395 ~~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~ 471 (580)
..+||++|||.+++ +..+|++|||++|+++||||++. ...|+.|++||++|.+
T Consensus 7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~------------------------~e~F~~I~~AY~vLsd 61 (114)
T d1gh6a_ 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------------------------EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------------------------TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh------------------------HHHHHHHHHHHHHhCC
Confidence 45899999999999 68899999999999999999754 1359999999996543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.03 E-value=8.2e-10 Score=93.74 Aligned_cols=93 Identities=12% Similarity=-0.004 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++.+|.+++..|++++|+..|++++.+. |++..+...+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------------p~~~~a~~~l---- 56 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE--------------------------------------PEREEAWRSL---- 56 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------------------TTCHHHHHHH----
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc--------------------------------------cccchhhhhh----
Confidence 5678999999999999999999999873 6666555554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTL 309 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al 309 (580)
|.++.+.|++.+|+..|.++|++ .|.+..+++++|.+|..+|++++|+..+++.|
T Consensus 57 --------g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 57 --------GLTQAENEKDGLAIIALNHARML-----DPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhhhhhhhHHHhhccccccccc-----ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999998 45589999999999999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.02 E-value=3e-10 Score=101.27 Aligned_cols=112 Identities=12% Similarity=0.002 Sum_probs=90.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 008039 169 CCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRT 248 (580)
Q Consensus 169 ~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~ 248 (580)
|-+++.|++|+..|++++++ +|++..+...+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~--------------------------------------~P~~~~~~~~~----------- 37 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS--------------------------------------NPLDADNLTRW----------- 37 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHH-----------
T ss_pred HHHHccHHHHHHHHHHHHhh--------------------------------------CCcchHHHHHH-----------
Confidence 45667799999999999988 36666665554
Q ss_pred HHHHHHH----------cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCC-----------hHHHHHHHHH
Q 008039 249 AAIAALD----------AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGR-----------IAESIADCNK 307 (580)
Q Consensus 249 ~G~~~~~----------~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~-----------~~eAl~~~~~ 307 (580)
|.+++. .+.+++|+..|+++|++ .|.++.+|+++|.+|..+|+ |.+|+.+|.+
T Consensus 38 -g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-----~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~k 111 (145)
T d1zu2a1 38 -GGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQ 111 (145)
T ss_dssp -HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-----cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhc
Confidence 666653 45678999999999998 45589999999999998764 7899999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcCChhHH
Q 008039 308 TLALEPSCIQALDTRALLLETIRCLPDC 335 (580)
Q Consensus 308 Al~ldP~~~~A~~~ra~~~~~lg~~~eA 335 (580)
+|.++|++..++..++.+....+.+.++
T Consensus 112 al~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 112 AVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888887555444443
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Probab=98.97 E-value=1.8e-10 Score=91.45 Aligned_cols=55 Identities=22% Similarity=0.212 Sum_probs=46.9
Q ss_pred ccchhhhhcccCCC--CHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGC--SRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a--~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..+||++|||++++ +..+|+++|++++++||||+++. .+.|+.|++||++|.+.
T Consensus 10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------------------------~e~~~~in~Ay~~L~d~ 65 (79)
T d1fafa_ 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------------------------HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------------------------HHHHHHHHHHHHHHCCH
Confidence 45799999999988 89999999999999999999643 24699999999976553
Q ss_pred h
Q 008039 473 I 473 (580)
Q Consensus 473 ~ 473 (580)
+
T Consensus 66 ~ 66 (79)
T d1fafa_ 66 V 66 (79)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.96 E-value=4.5e-10 Score=100.10 Aligned_cols=90 Identities=9% Similarity=-0.031 Sum_probs=77.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCcHHHHH
Q 008039 251 IAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS----------GRIAESIADCNKTLALEPSCIQALD 320 (580)
Q Consensus 251 ~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l----------g~~~eAl~~~~~Al~ldP~~~~A~~ 320 (580)
..+-+.+.|++|+..|+++|++ .|.++.+++++|.++..+ +.+++|+..|++||+++|+++.+|+
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~-----~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~ 79 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 79 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhh-----CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence 3455678899999999999998 455899999999999865 4558899999999999999999999
Q ss_pred HHHHHHHhcCC-----------hhHHHHHHHHHHHH
Q 008039 321 TRALLLETIRC-----------LPDCLHDLEHLKLL 345 (580)
Q Consensus 321 ~ra~~~~~lg~-----------~~eAi~~~~~al~l 345 (580)
++|.+|..+|+ |++|+..|++++++
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 99999988764 57777777777777
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.95 E-value=1.1e-09 Score=98.27 Aligned_cols=116 Identities=15% Similarity=0.036 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 008039 162 YLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIK 241 (580)
Q Consensus 162 ~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k 241 (580)
++..|..++..|++++|+..|++++++.+.. ++.. ........+..+.
T Consensus 12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~---------~~~~-------------------~~~~~~~~a~~~~---- 59 (156)
T d2hr2a1 12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTM---------PPEE-------------------AFDHAGFDAFCHA---- 59 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---------CTTS-------------------CCCHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhChhh---------hhhh-------------------hcccchhHHHHHH----
Confidence 4445889999999999999999999986320 0000 0000111122222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC------CCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Q 008039 242 LLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRR------GAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC 315 (580)
Q Consensus 242 ~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~------~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~ 315 (580)
..|.++++.|+|++|+..|+++|.+.+ +...+....+|+++|.+|..+|++++|+.+|.+|+++.|..
T Consensus 60 ------nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 60 ------GLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp ------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 339999999999999999999998631 11122345689999999999999999999999999996643
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.94 E-value=8.4e-09 Score=95.11 Aligned_cols=104 Identities=20% Similarity=0.139 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCC-----------------cccHHHHHHHHHHHHHcCChHHHHHHH
Q 008039 243 LLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQ-----------------GFLAECYMHRAFAYRSSGRIAESIADC 305 (580)
Q Consensus 243 ~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~-----------------~~~a~~~~nra~a~~~lg~~~eAl~~~ 305 (580)
+..+...|+.++..|++++|+..|.+||.+...... +....++.+++.++..+|++++|+.+|
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 344556699999999999999999999998421100 113478899999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 306 NKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 306 ~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
+++|.++|.+..+|..++.+|..+|++.+|+..|+++....
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L 131 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.88 E-value=9.2e-08 Score=94.78 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------cChHHHHHHHHhhhhhhhhcCCCCCCCCCCch
Q 008039 40 SEIASALSLLDAALALSPRLELALELKARSLLYL--------------RRFKDVADMLQDYIPSLKMANDDSGSVSSDSS 105 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l--------------~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~ 105 (580)
.....+..+|++||...|.++.+|..-+.-+... +.+++|...|++++..
T Consensus 30 ~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~---------------- 93 (308)
T d2onda1 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----------------
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH----------------
Confidence 3466788899999999999999998766654332 3346666666665411
Q ss_pred hhHhHHHHHhhhcCCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008039 106 SQQLSRERVKLLHSGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTG 185 (580)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~a 185 (580)
+.|. .. ..|+..+..+...|+++.|...|+++
T Consensus 94 -----------~~p~-----------------------------------~~--~l~~~ya~~~~~~~~~~~a~~i~~~~ 125 (308)
T d2onda1 94 -----------LLKK-----------------------------------NM--LLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp -----------TTTT-----------------------------------CH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------cCCC-----------------------------------CH--HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0111 11 13556788999999999999999998
Q ss_pred HHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008039 186 KRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMT-ESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIR 264 (580)
Q Consensus 186 l~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dP-d~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~ 264 (580)
+... | +...+...+ ++...+.|+++.|..
T Consensus 126 l~~~--------------------------------------~~~~~~~w~~~------------~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 126 LAIE--------------------------------------DIDPTLVYIQY------------MKFARRAEGIKSGRM 155 (308)
T ss_dssp HTSS--------------------------------------SSCTHHHHHHH------------HHHHHHHHCHHHHHH
T ss_pred HHHh--------------------------------------cCChHHHHHHH------------HHHHHHcCChHHHHH
Confidence 8542 2 223333333 667778899999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008039 265 HFSKIVDGRRGAPQGFLAECYMHRAFAYR-SSGRIAESIADCNKTLALEPSCIQALDTRALLLETIRCLPDCLHDLEHLK 343 (580)
Q Consensus 265 ~y~~AL~~~~~~~~~~~a~~~~nra~a~~-~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~lg~~~eAi~~~~~al 343 (580)
.|.+++.. .|....+|...+.... ..|+.+.|...|++++..+|+++..+...+..+...|+++.|...|++++
T Consensus 156 i~~~al~~-----~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 156 IFKKARED-----ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHTS-----TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-----CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999997 3446677888887644 46899999999999999999999999999999999999999999999997
Q ss_pred HH
Q 008039 344 LL 345 (580)
Q Consensus 344 ~l 345 (580)
..
T Consensus 231 ~~ 232 (308)
T d2onda1 231 TS 232 (308)
T ss_dssp HS
T ss_pred Hh
Confidence 65
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=8e-09 Score=110.25 Aligned_cols=115 Identities=12% Similarity=-0.045 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 008039 160 WRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSH 239 (580)
Q Consensus 160 ~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~ 239 (580)
..+..+|.++...|+.++|+..+++++.+.+ ..+ +..
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----------------------------------------~~~--~~~- 157 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC----------------------------------------QHC--LVH- 157 (497)
T ss_dssp ----------------------CCHHHHHHH----------------------------------------HHH--HHH-
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----------------------------------------HHH--HHH-
Confidence 3456677788888888888877777665531 111 222
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHH
Q 008039 240 IKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQAL 319 (580)
Q Consensus 240 ~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~ 319 (580)
.|..+...|+|++|+.+|.+|+.+ .|.+...|+++|.++...|++.+|+.+|.+||.++|.++.|+
T Consensus 158 ---------LG~l~~~~~~~~~A~~~y~~A~~l-----~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~ 223 (497)
T d1ya0a1 158 ---------LGDIARYRNQTSQAESYYRHAAQL-----VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223 (497)
T ss_dssp ---------HHHHHHHTTCHHHHHHHHHHHHHH-----CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHH
T ss_pred ---------HHHHHHHcccHHHHHHHHHHHHHH-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHH
Confidence 299999999999999999999998 455889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 008039 320 DTRALLLETIRC 331 (580)
Q Consensus 320 ~~ra~~~~~lg~ 331 (580)
.+++.++.....
T Consensus 224 ~nL~~~~~~~~~ 235 (497)
T d1ya0a1 224 TNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 999999876554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=9.5e-08 Score=94.68 Aligned_cols=188 Identities=10% Similarity=-0.010 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCCCCCCCCchhhHhHHHHHhhhc
Q 008039 40 SEIASALSLLDAALAL-SPRLELALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDSGSVSSDSSSQQLSRERVKLLH 118 (580)
Q Consensus 40 ~d~~~Al~~~~~Al~l-~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 118 (580)
+.+++|..+|++|+.. .|.+...|...|..+..+|.++.|...|++++. ..|.+.
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~---~~~~~~--------------------- 133 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDP--------------------- 133 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCT---------------------
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH---HhcCCh---------------------
Confidence 4578899999999974 899999999999999999999999999999662 211111
Q ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHhhhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhc
Q 008039 119 SGGDSSDDSLGRDPSFKCFSVSDLKKKVMAGLCRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESI 198 (580)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~ 198 (580)
...|..++......|+++.|...|+++++..
T Consensus 134 ----------------------------------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--------- 164 (308)
T d2onda1 134 ----------------------------------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------- 164 (308)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---------
T ss_pred ----------------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------
Confidence 1135666888899999999999999988652
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccCCCC
Q 008039 199 SLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRRRTAAIAA-LDAGLYSEAIRHFSKIVDGRRGAP 277 (580)
Q Consensus 199 ~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~k~~G~~~-~~~g~y~eAi~~y~~AL~~~~~~~ 277 (580)
|........+ |... ...|+.+.|...|.+++..
T Consensus 165 -----------------------------~~~~~~~~~~------------a~~e~~~~~~~~~a~~i~e~~l~~----- 198 (308)
T d2onda1 165 -----------------------------RTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKK----- 198 (308)
T ss_dssp -----------------------------TCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHH-----
T ss_pred -----------------------------CCcHHHHHHH------------HHHHHHhccCHHHHHHHHHHHHHh-----
Confidence 3333332222 3333 3468999999999999997
Q ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q 008039 278 QGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSC----IQALDTRALLLETIRCLPDCLHDLEHLKLLY 346 (580)
Q Consensus 278 ~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~----~~A~~~ra~~~~~lg~~~eAi~~~~~al~l~ 346 (580)
.|.+..++...+......|+++.|...|+++|...|.+ ...|......-...|+.+.+...++++.+++
T Consensus 199 ~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 199 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45578999999999999999999999999999987754 3456666666678899999999999998884
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.80 E-value=9e-10 Score=91.31 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=52.1
Q ss_pred ccchhhhhcccCCCCHHHHHHHHHHHHhhcCCCCCCCchhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHhcCc
Q 008039 395 NVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKAISFTERCEFADERDLDSVRDRAKMSALLLYRLLQRGYSSVMSN 472 (580)
Q Consensus 395 ~~d~y~iLgv~~~a~~~ei~~ayr~lal~~hPDk~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~f~~i~~Ay~~l~~~ 472 (580)
..++|+.||+...++..+|+++|+++++.+||||+++... +..|+..|..|++||++|.+.
T Consensus 32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~-----------------~~~a~~~f~~I~~Ay~~L~d~ 92 (98)
T d1nz6a_ 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY-----------------EQYAKMIFMELNDAWSEFENQ 92 (98)
T ss_dssp TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTT-----------------HHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHH-----------------HHHHHHHHHHHHHHHHHHCCH
Confidence 3468999999999999999999999999999999765443 256889999999999976553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.65 E-value=6.8e-06 Score=78.46 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=75.2
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHH
Q 008039 250 AIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDT 321 (580)
Q Consensus 250 G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ 321 (580)
|..++. ..+...++..+..+.+.. +..+++++|.+|.. ..+++.|+.+|.++.+. +++.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g-------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~ 219 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK-------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFN 219 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc-------ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHH
Confidence 666665 567889999999998852 67899999999998 67899999999999987 57999999
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHHH
Q 008039 322 RALLLET----IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 322 ra~~~~~----lg~~~eAi~~~~~al~l 345 (580)
+|.+|.. ..++++|+..|+++.++
T Consensus 220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 220 LGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 9999986 45899999999999777
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.2e-07 Score=75.88 Aligned_cols=87 Identities=10% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 008039 161 RYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHI 240 (580)
Q Consensus 161 ~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~ 240 (580)
-++.+|.+++..|++++|+..|++++++.+.. ....++...+... .
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~-------------------------------~~~~~~~~~~l~~--L- 52 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEG-------------------------------EISTIDKVSVLDY--L- 52 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-------------------------------CCCSSCHHHHHHH--H-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh-------------------------------hccCccHHHHHHH--H-
Confidence 47889999999999999999999999886420 0001222333332 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHc
Q 008039 241 KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSS 295 (580)
Q Consensus 241 k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~l 295 (580)
|.++++.|+|++|+..|+++|++ .|.+..++.|++.....+
T Consensus 53 ---------g~~~~~~g~~~~A~~~y~~aL~l-----~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 53 ---------SYAVYQQGDLDKALLLTKKLLEL-----DPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHH
T ss_pred ---------hhHHHhcCChHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 455789999998776554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.43 E-value=2.6e-06 Score=77.94 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 008039 159 QWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLS 238 (580)
Q Consensus 159 ~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~ 238 (580)
...++..|..+...|++++|+..|.+++.+.+ ++.+... ++...+.....
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~r-----------G~~l~~~-------------------~~~~w~~~~r~ 60 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWR-----------GPVLDDL-------------------RDFQFVEPFAT 60 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-----------SSTTGGG-------------------TTSTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-----------ccccccC-------------------cchHHHHHHHH
Confidence 34577889999999999999999999998731 1111100 01111111111
Q ss_pred HH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 008039 239 HI--KLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKT 308 (580)
Q Consensus 239 ~~--k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~A 308 (580)
.+ ..+......|..+...|+|++|+..++++|.+ +|.+..+|.+++.++..+|++.+|+..|.++
T Consensus 61 ~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~-----~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 61 ALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE-----HPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11 22344556799999999999999999999998 5668999999999999999999999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.31 E-value=5.7e-07 Score=87.71 Aligned_cols=124 Identities=8% Similarity=-0.061 Sum_probs=106.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 008039 167 QACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFPFSKFPVSNNHQTPPATPPRTMTESESVSQLLSHIKLLLRR 246 (580)
Q Consensus 167 ~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~dPd~~~~~~ll~~~k~~~~~ 246 (580)
+-.+..|++++|+..|+++++. +|++..+...+
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~--------------------------------------~P~d~~ar~~L--------- 36 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKA--------------------------------------SPKDASLRSSF--------- 36 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--------------------------------------CTTCHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHH--------------------------------------CCCCHHHHHHH---------
Confidence 4567889999999999999976 36777776666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCcHHHHHHHHHH
Q 008039 247 RTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLA-LEPSCIQALDTRALL 325 (580)
Q Consensus 247 k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~-ldP~~~~A~~~ra~~ 325 (580)
|..++..|+|++|+..|++++++ .|....++.+++.++...+...+++..+.+... .+|....++..++.+
T Consensus 37 ---a~lL~~~G~~e~A~~~l~~a~~l-----~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~ 108 (264)
T d1zbpa1 37 ---IELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNL 108 (264)
T ss_dssp ---HHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHH
Confidence 89999999999999999999998 456888899999999888888887776665444 467778889999999
Q ss_pred HHhcCChhHHHHHHHHHHHH
Q 008039 326 LETIRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 326 ~~~lg~~~eAi~~~~~al~l 345 (580)
+...|++++|+..++++.++
T Consensus 109 ~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 109 SMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhc
Confidence 99999999999999999888
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.27 E-value=5e-07 Score=88.15 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccChHHHHHHHHhhh
Q 008039 30 ARTLIATQEHSEIASALSLLDAALALSPRLELALELKARSLLYLRRFKDVADMLQDYI 87 (580)
Q Consensus 30 ~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~~~~~~rA~~l~~l~r~~eAi~~~~~~l 87 (580)
++.++ ..|++++|+..|.++|+.+|.++.++.++|.+|+..|++++|+..|+.++
T Consensus 3 ~~~aL---~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~ 57 (264)
T d1zbpa1 3 WKNAL---SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 57 (264)
T ss_dssp HHHHT---TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHH---HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44556 68999999999999999999999999999999999999999999999965
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.95 E-value=0.00051 Score=64.78 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh---
Q 008039 256 AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLET--- 328 (580)
Q Consensus 256 ~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~--- 328 (580)
......|+..+.+..... ....++++|.++.. ..+...++..+..+.+ +.++.+++.+|.++..
T Consensus 123 ~~~~~~a~~~~~~~~~~~-------~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~ 193 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACDLN-------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEG 193 (265)
T ss_dssp CCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHhhhhhccc-------ccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcc
Confidence 556888888888887742 56788999999997 4566778888888775 5789999999999997
Q ss_pred -cCChhHHHHHHHHHHHH
Q 008039 329 -IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 -lg~~~eAi~~~~~al~l 345 (580)
..++++|+..|+++.+.
T Consensus 194 ~~~d~~~A~~~~~~aa~~ 211 (265)
T d1ouva_ 194 ATKNFKEALARYSKACEL 211 (265)
T ss_dssp SCCCHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhHhhhhcc
Confidence 77999999999999665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.00026 Score=59.90 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=61.3
Q ss_pred HHHHHHcC---CHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 008039 250 AIAALDAG---LYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCNKTLALEPSCIQALDTRALLL 326 (580)
Q Consensus 250 G~~~~~~g---~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~ 326 (580)
|..+.+.. +..++|.++..++.. +| .....+++++|.+|.++|+|+.|+.+|+++|+++|+|..|...+-.+-
T Consensus 42 Aw~Lv~S~~~~d~~~gI~lLe~~~~~-~p---~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie 117 (124)
T d2pqrb1 42 AWGLIKSTDVNDERLGVKILTDIYKE-AE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE 117 (124)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHH-CG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhc-Cc---hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 77777654 457999999999985 22 124589999999999999999999999999999999999987666554
Q ss_pred H
Q 008039 327 E 327 (580)
Q Consensus 327 ~ 327 (580)
.
T Consensus 118 ~ 118 (124)
T d2pqrb1 118 D 118 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.58 E-value=0.00047 Score=58.76 Aligned_cols=82 Identities=9% Similarity=-0.036 Sum_probs=71.4
Q ss_pred HcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--
Q 008039 255 DAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALEPSCIQALDTRALLLET-- 328 (580)
Q Consensus 255 ~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ldP~~~~A~~~ra~~~~~-- 328 (580)
...++++|+..|.++.+.. ++.+.+++|..|.. ..++..|+.+|.++.+. .++.+.+.+|.+|..
T Consensus 35 ~~~~~~~a~~~~~~aa~~g-------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~ 105 (133)
T d1klxa_ 35 SQINKQKLFQYLSKACELN-------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGK 105 (133)
T ss_dssp TTSCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred cccCHHHHHHHHhhhhccc-------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCC
Confidence 3578999999999999852 67889999999987 56789999999999876 689999999999987
Q ss_pred --cCChhHHHHHHHHHHHH
Q 008039 329 --IRCLPDCLHDLEHLKLL 345 (580)
Q Consensus 329 --lg~~~eAi~~~~~al~l 345 (580)
..++.+|+..|+++.++
T Consensus 106 gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 106 GVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp SSCCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHC
Confidence 56899999999999765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.0014 Score=55.24 Aligned_cols=72 Identities=8% Similarity=0.081 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccChHHHHHHHHhhhhhhhhcCCCC
Q 008039 23 VDKYIRDARTLIATQEHSEIASALSLLDAALALSPRLE-LALELKARSLLYLRRFKDVADMLQDYIPSLKMANDDS 97 (580)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~d~~~Al~~~~~Al~l~P~~~-~~~~~rA~~l~~l~r~~eAi~~~~~~l~~l~~~~~~~ 97 (580)
++--+..|+.|+......+...++.+|..++..+|... .+++++|.++..+|+|++|..+++++| ++.|++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L---~ieP~n~ 107 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF---EHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTTCH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---ccCCCcH
Confidence 45566889999988888999999999999999999764 799999999999999999999999954 6666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.78 E-value=0.075 Score=44.23 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=47.9
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 008039 250 AIAALD----AGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRS----SGRIAESIADCNKTLALE 312 (580)
Q Consensus 250 G~~~~~----~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~----lg~~~eAl~~~~~Al~ld 312 (580)
|..++. ..++.+|+..|.++.+.. ++.+.+++|.+|.. ..++..|+.+|.+|.++.
T Consensus 62 g~~y~~g~~~~~d~~~A~~~~~~aa~~g-------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 62 GDFYENGKYVKKDLRKAAQYYSKACGLN-------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHhhhhccccchhhHHHHHHHhhhhccC-------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 777765 568999999999999962 57889999999987 468999999999999874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.32 E-value=9.5 Score=37.36 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=72.6
Q ss_pred hccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCC----CCCCCCCCCCCCCCCCCCCC
Q 008039 151 CRNCEKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLATAAFRRESISLSDDSFP----FSKFPVSNNHQTPPATPPRT 226 (580)
Q Consensus 151 ~~~~~~~~~~~~~~LG~a~~~lG~~eeAi~~l~~al~l~~~~~r~~~~~~~~d~~~----~~~l~~~~~~~~~~~~~~~~ 226 (580)
..+......|.|+ +|.++..+|+.++|...|..+..- .+|. ...+|.....+ ..++..
T Consensus 312 ~~~~~~~~r~~YW-~gRa~~~~G~~~~A~~~~~~~a~~--------------~~fYG~LAa~~Lg~~~~~~---~~~~~~ 373 (450)
T d1qsaa1 312 PMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLMQQ--------------RGFYPMVAAQRIGEEYELK---IDKAPQ 373 (450)
T ss_dssp CTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTS--------------CSHHHHHHHHHTTCCCCCC---CCCCCS
T ss_pred CcccccHHHHHHH-HHHHHHHcCChhhHHHHHHHHhcC--------------CChHHHHHHHHcCCCCCCC---cCCCCc
Confidence 3344445567665 799999999999999999986531 0111 11122211111 011111
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHcCChHHHHHHHH
Q 008039 227 MTESESVSQLLSHIKLLLRRRTAAIAALDAGLYSEAIRHFSKIVDGRRGAPQGFLAECYMHRAFAYRSSGRIAESIADCN 306 (580)
Q Consensus 227 dPd~~~~~~ll~~~k~~~~~k~~G~~~~~~g~y~eAi~~y~~AL~~~~~~~~~~~a~~~~nra~a~~~lg~~~eAl~~~~ 306 (580)
.++. .... ......+..++..|...+|...+..++... +..-...++....+.|.++.||....
T Consensus 374 ~~~~-~~~~--------~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-------~~~~~~~la~lA~~~g~~~~aI~a~~ 437 (450)
T d1qsaa1 374 NVDS-ALTQ--------GPEMARVRELMYWNLDNTARSEWANLVKSK-------SKTEQAQLARYAFNNQWWDLSVQATI 437 (450)
T ss_dssp CCCC-HHHH--------SHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHH-hhhc--------ChHHHHHHHHHHcCCchHHHHHHHHHHhCC-------CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 1111 1110 011223777888899999988888777631 34445567888888899988887776
Q ss_pred HH
Q 008039 307 KT 308 (580)
Q Consensus 307 ~A 308 (580)
++
T Consensus 438 ~~ 439 (450)
T d1qsaa1 438 AG 439 (450)
T ss_dssp HT
T ss_pred HH
Confidence 65
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.54 E-value=1.5 Score=34.00 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHHHhhhcCCCCCccccccccccccchhhHHHHHHHHHHHHHHhh
Q 008039 319 LDTRALLLETIRCLPDCLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTTKIQELKQRVA 389 (580)
Q Consensus 319 ~~~ra~~~~~lg~~~eAi~~~~~al~l~~~~l~~~~~p~~~w~~~~~r~~ei~~~l~~~~~~~k~lk~~~~ 389 (580)
+..+|.-+-..|+|++|+..|..++++.-..++..+ ++. +...+..++.+...++..+++.+.
T Consensus 18 l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~--~~~------~k~~l~~k~~eYl~RAE~LK~~l~ 80 (93)
T d1wfda_ 18 VLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTK--ESS------KRCVLRTKISGYMDRAENIKKYLD 80 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCC--CHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccC--CHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566889999999999999998766554432 211 123456677788888888876543
|