Citrus Sinensis ID: 008040

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

MEALKLWSTLSSLPISFRHVIRRRTSLTFVRCRSSTSITVSAGTRNRRASSSSTSTSDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ

cHHccccHHHccccHHHHHHHcccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccEEEEEEEEHHHHcccccccEEEEEccccEEEEEEcccccHHHHHHHHHccccccEEEEEEEEEEcccccEEEEEcEEEEEcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccccccccccccHHHHHcccccHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHccccccccc

cHHHHHHHHHccccccHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccHHHHHHcccEEEEEEHHEEEcccccEEEEEEEccccEEEEEEEcccccHHHHHHHHHHcccccEEEEEEEEEEccccEEEEEEcHEHHHHHHccccccHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccHccHHHHHHHHHHHHHHHHHHccHHHHHHHcHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEcccccHHHHHHHHHHHHcccccHccccHHHHHHHHcHHHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHHccccEEEEcccEEEcccccccccccccccHEEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHccccccHHHHHHccccHHHcccccHHHHHHccEccccEEEEEEEHHHHHHHHHccccHHHHcccccccccc

MEALKLWSTLsslpisfrHVIRRRtsltfvrcrsstsitvsagtrnrrasssststsDREAVRALRIKKVEELRskglepyaykwdrthsANQLQEIYRHLAngeesnsendhvSVAGRVVARRAFGKLAFLtlrddsgtiQLYCEKERLLSDQFDQLKVFVDIGdilgvsgsmkrtekgELSVLVNSFVILTksllplpdkyhgltdvdkRYRQRYVdmiskpevADVFRKRAKIVSEIRKTVESLgfvevetpvlqgaaggaearpfvtyhnslGRDLYLRIATELHLKRMLIGGFEKIYEIGRIfrneglstrhnpeftTIEMYEAYSDYQSMMNITEEIVTHCAlavngkltidyqgveiclerpwrreTMHNLVKeatgidfnelGNDLKVAKETTLRAlgdglenkdkfviesspsvgnLLNEVFEIVvepklvqptfvldypieisplakphrrhaglteRFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKlkesddhsyevtlddDFVTAleygmppasgmglgIDRLVMLLTNSASIRDVIAFPILKIQQ

MEALKLWStlsslpisfrhvirrrtsltfvrcrsstsitvsagtrnrrasssststsdreavRALRikkveelrskglepyaykwdrtHSANQLQEIYRHLANgeesnsendhVSVAGRVVARRAFGKLafltlrddsgTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILtksllplpdkyhgltdvdkrYRQRYVdmiskpevadvfrKRAKIVSEIRktveslgfvevETPVLqgaaggaearPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRifrneglstrhnpefTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEatgidfnelgNDLKVAKETTLRalgdglenkdKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEIsplakphrrhaGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNekraaavsekssaqeklkesddhsyevTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSasirdviafpilkiqq

MEALKLWSTLSSLPISFRHVIRRRTSLTFVRCRSSTSITVSAGTRNRRAsssststsDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSvagrvvarraFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ

****KLWSTLSSLPISFRHVIRRRTSLTFVRCRS******************************************GLEPYAYKWDRTHSANQLQEIYRHL************VSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAF**********************************************EVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKI**

****K**STLSSLPISFRHVIRRRTSLT*************************************RIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKI**

MEALKLWSTLSSLPISFRHVIRRRTSLTFVRCRSSTSIT**********************VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANG********HVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLE*****************************HSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ

*EALKLWSTLSSLPISFRHVIRRRTSLTFVRCRSS*********************SDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNE******************SDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPIL****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo

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MEALKLWSTLSSLPISFRHVIRRRTSLTFVRCRSSTSITVSAGTRNRRASSSSTSTSDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		580	2.2.26 [Sep-21-2011]
Q8DMA9		506	Lysine--tRNA ligase OS=Th	yes	no	0.834	0.956	0.607	0.0
P73443		510	Lysine--tRNA ligase OS=Sy	N/A	no	0.858	0.976	0.589	0.0
B2J384		561	Lysine--tRNA ligase OS=No	yes	no	0.837	0.866	0.590	1e-176
Q8YPW9		561	Lysine--tRNA ligase OS=No	yes	no	0.837	0.866	0.584	1e-175
Q3M8C8		561	Lysine--tRNA ligase OS=An	yes	no	0.837	0.866	0.577	1e-174
Q5N1D9		504	Lysine--tRNA ligase OS=Sy	yes	no	0.834	0.960	0.586	1e-173
Q31KH4		504	Lysine--tRNA ligase OS=Sy	yes	no	0.834	0.960	0.586	1e-173
Q0IDW9		489	Lysine--tRNA ligase OS=Sy	yes	no	0.832	0.987	0.554	1e-158
Q7U3A4		508	Lysine--tRNA ligase OS=Pr	yes	no	0.834	0.952	0.547	1e-157
Q7U9X5		502	Lysine--tRNA ligase OS=Sy	yes	no	0.834	0.964	0.552	1e-156

>sp\|Q8DMA9\|SYK_THEEB Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1	Back alignment and function desciption

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/520 (60%), Positives = 389/520 (74%), Gaps = 36/520 (6%)

Query: 62  VRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVV 121
           +RA RI+K + L+++G+ PYAY+W+RTH+A  LQ+ Y HLA GE   +  D VSVAGR++
Sbjct: 11  IRATRIEKAKTLQAQGMSPYAYRWERTHTAALLQDKYAHLAAGE---AVGDRVSVAGRIM 67

Query: 122 ARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQ----FDQLKVFVDIGDILGVSGSMKRT 177
           ARR FGKLAF TL+DDSGTIQLY +K+ +        F  LK   D+GDILG  G++KRT
Sbjct: 68  ARRIFGKLAFFTLQDDSGTIQLYLDKQTISQTMGEAAFADLKHLTDVGDILGAVGTLKRT 127

Query: 178 EKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRAKIV 237
           EKGELSV+V S+ +LTKSLLPLPDK+HGLTDV+KRYRQRYVD+I  P+V D FRKRA I 
Sbjct: 128 EKGELSVVVESYTMLTKSLLPLPDKWHGLTDVEKRYRQRYVDLIVNPQVRDTFRKRALIT 187

Query: 238 SEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLIGG 297
           + IR+ +   GF+E+ETPVLQ  AGGAEARPF+TYHN+L   LYLRIATELHLKR+++GG
Sbjct: 188 AAIRRYLNEQGFIEIETPVLQVEAGGAEARPFITYHNTLEMQLYLRIATELHLKRLIVGG 247

Query: 298 FEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTI 357
           FEK+YE+GRIFRNEG+ST+HNPEFT+IE+Y+AY+DY  MM +TE I+T  A+ V G L I
Sbjct: 248 FEKVYELGRIFRNEGISTKHNPEFTSIEVYQAYADYNDMMTLTEAIITTGAMEVLGTLKI 307

Query: 358 DYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVI 417
            YQG  I L  PWRR TMH+ V  ATGIDF +LG DL  AK   + A   G+++ D    
Sbjct: 308 TYQGETIDLTPPWRRVTMHDAVLAATGIDFRQLG-DLTAAK---IAAQKVGVKDLD---- 359

Query: 418 ESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFICGRE 477
            +  ++G +LNEVFE +VEP L+QPTFVLDYP+EISPLAKPHR   GL ERFELFI GRE
Sbjct: 360 -TCDTIGRVLNEVFEQIVEPTLIQPTFVLDYPVEISPLAKPHRSQPGLVERFELFIVGRE 418

Query: 478 MANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDDFV 537
            AN+FSELTDPLDQR RLEEQ R+      AA                HS    +D+DF+
Sbjct: 419 HANSFSELTDPLDQRQRLEEQARRKAAGDLAA----------------HS----VDEDFL 458

Query: 538 TALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILK 577
           TALE+GMPP  G+G+GIDRLVMLLT+S SIRDVIAFP+L+
Sbjct: 459 TALEHGMPPTGGLGIGIDRLVMLLTDSPSIRDVIAFPLLR 498

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 6

>sp\|P73443\|SYK_SYNY3 Lysine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|B2J384\|SYK_NOSP7 Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q8YPW9\|SYK_NOSS1 Lysine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q3M8C8\|SYK_ANAVT Lysine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q5N1D9\|SYK_SYNP6 Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q31KH4\|SYK_SYNE7 Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q0IDW9\|SYK_SYNS3 Lysine--tRNA ligase OS=Synechococcus sp. (strain CC9311) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q7U3A4\|SYK_PROMM Lysine--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=lysS PE=3 SV=1	Back alignment and function description

>sp\|Q7U9X5\|SYK_SYNPX Lysine--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=lysS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
255564836		585	lysyl-tRNA synthetase, putative [Ricinus	0.996	0.988	0.820	0.0
225435776		592	PREDICTED: lysyl-tRNA synthetase [Vitis	1.0	0.979	0.800	0.0
147798996		601	hypothetical protein VITISV_036995 [Viti	1.0	0.965	0.785	0.0
449463846		603	PREDICTED: lysine--tRNA ligase-like [Cuc	0.993	0.955	0.747	0.0
356504551		584	PREDICTED: lysyl-tRNA synthetase-like [G	0.993	0.986	0.782	0.0
297834174		603	hypothetical protein ARALYDRAFT_478735 [	0.901	0.867	0.831	0.0
15231261		602	Lysyl-tRNA synthetase, class II [Arabido	0.901	0.868	0.831	0.0
242037499		580	hypothetical protein SORBIDRAFT_01g00214	0.886	0.886	0.749	0.0
357150238		583	PREDICTED: lysyl-tRNA synthetase-like [B	0.891	0.886	0.744	0.0
326511347		582	predicted protein [Hordeum vulgare subsp	0.989	0.986	0.688	0.0

>gi\|255564836\|ref\|XP_002523412.1\| lysyl-tRNA synthetase, putative [Ricinus communis] gi\|223537362\|gb\|EEF38991.1\| lysyl-tRNA synthetase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/586 (82%), Positives = 529/586 (90%), Gaps = 8/586 (1%)

Query: 1   MEALKLWSTLSSLPISFRHVIRRRTSLT-----FVRCRS-STSITVSAGTRNRRASSSST 54
           +EAL++W T SS  + FRH +R  T+        +RC S S+S       RNRR+SSSS+
Sbjct: 2   VEALRVW-TFSSSIVPFRHFLRFTTTKRTFTSLLLRCSSNSSSAATKVAGRNRRSSSSSS 60

Query: 55  STSDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHV 114
           STSDREAVRA+R+KKVEELRSKGLEPYAYKW+RTH+ANQLQEIYR+LANGEE  +E+D+V
Sbjct: 61  STSDREAVRAIRLKKVEELRSKGLEPYAYKWERTHTANQLQEIYRYLANGEELRNESDNV 120

Query: 115 SVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSM 174
           S+AGR+VARRAFGKLAFLTLRDDSGTIQLYCEKERLL+D+F++LK  VDIGDILG SGSM
Sbjct: 121 SIAGRIVARRAFGKLAFLTLRDDSGTIQLYCEKERLLNDEFEKLKTLVDIGDILGASGSM 180

Query: 175 KRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYVDMISKPEVADVFRKRA 234
           KRTEKGELS+ VNSF ILTKSLLPLPDKYHGLTDVDKRYRQRYVDMI+ PEVADVFRKRA
Sbjct: 181 KRTEKGELSICVNSFTILTKSLLPLPDKYHGLTDVDKRYRQRYVDMIANPEVADVFRKRA 240

Query: 235 KIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRML 294
           KIVSEIRKTVES GF+EVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRML
Sbjct: 241 KIVSEIRKTVESSGFLEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRML 300

Query: 295 IGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGK 354
           +GGFEK+YEIGRIFRNEG+STRHNPEFTTIEMYEAYSDYQSMMN+ EEIVT CALAV+GK
Sbjct: 301 VGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNMAEEIVTRCALAVHGK 360

Query: 355 LTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDK 414
           LTIDYQGV++CLERPWRRETMHNLVKEATGIDFNELGNDLKVAK+TTLR LG  LE+KD+
Sbjct: 361 LTIDYQGVDVCLERPWRRETMHNLVKEATGIDFNELGNDLKVAKDTTLRNLGPVLEHKDR 420

Query: 415 FVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKPHRRHAGLTERFELFIC 474
             +E   SVGNLLNEVFEIVVEPKL+QPTFVLDYPIEISPLAKPHRRH GLTERFELFIC
Sbjct: 421 SSVEGCSSVGNLLNEVFEIVVEPKLLQPTFVLDYPIEISPLAKPHRRHVGLTERFELFIC 480

Query: 475 GREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDD 534
           GRE+ANAFSELTDP+DQR RLEEQVRQHNEKR + +SE    +EK  E +D SY VTLDD
Sbjct: 481 GRELANAFSELTDPMDQRGRLEEQVRQHNEKR-STISEAHKEEEKKDEQEDDSYSVTLDD 539

Query: 535 DFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ 580
           DF+TALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFP+LK+QQ
Sbjct: 540 DFLTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPVLKVQQ 585

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225435776\|ref\|XP_002285737.1\| PREDICTED: lysyl-tRNA synthetase [Vitis vinifera] gi\|297746486\|emb\|CBI16542.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147798996\|emb\|CAN72569.1\| hypothetical protein VITISV_036995 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449463846\|ref\|XP_004149642.1\| PREDICTED: lysine--tRNA ligase-like [Cucumis sativus] gi\|449515797\|ref\|XP_004164934.1\| PREDICTED: lysine--tRNA ligase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356504551\|ref\|XP_003521059.1\| PREDICTED: lysyl-tRNA synthetase-like [Glycine max]	Back alignment and taxonomy information

>gi\|297834174\|ref\|XP_002884969.1\| hypothetical protein ARALYDRAFT_478735 [Arabidopsis lyrata subsp. lyrata] gi\|297330809\|gb\|EFH61228.1\| hypothetical protein ARALYDRAFT_478735 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15231261\|ref\|NP_187958.1\| Lysyl-tRNA synthetase, class II [Arabidopsis thaliana] gi\|9280301\|dbj\|BAB01756.1\| lysyl-tRNA synthetase [Arabidopsis thaliana] gi\|26983796\|gb\|AAN86150.1\| putative lysyl-tRNA synthetase [Arabidopsis thaliana] gi\|332641843\|gb\|AEE75364.1\| Lysyl-tRNA synthetase, class II [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|242037499\|ref\|XP_002466144.1\| hypothetical protein SORBIDRAFT_01g002140 [Sorghum bicolor] gi\|241919998\|gb\|EER93142.1\| hypothetical protein SORBIDRAFT_01g002140 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|357150238\|ref\|XP_003575390.1\| PREDICTED: lysyl-tRNA synthetase-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326511347\|dbj\|BAJ87687.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
TAIR\|locus:2092850		602	OVA5 "OVULE ABORTION 5" [Arabi	0.943	0.908	0.789	4.4e-235
TIGR_CMR\|CHY_2365		488	CHY_2365 "lysyl-tRNA synthetas	0.720	0.856	0.488	1.7e-124
TIGR_CMR\|BA_0076		499	BA_0076 "lysyl-tRNA synthetase	0.737	0.857	0.456	2.5e-121
UNIPROTKB\|Q97RS9		496	lysS "Lysine--tRNA ligase" [St	0.731	0.854	0.432	7e-113
TIGR_CMR\|DET_0578		498	DET_0578 "lysyl-tRNA synthetas	0.748	0.871	0.425	2.3e-112
TIGR_CMR\|GSU_2271		491	GSU_2271 "lysyl-tRNA synthetas	0.718	0.849	0.448	5.6e-109
TIGR_CMR\|CJE_0450		501	CJE_0450 "lysyl-tRNA synthetas	0.751	0.870	0.408	1.4e-103
TIGR_CMR\|CBU_0430		498	CBU_0430 "lysyl-tRNA synthetas	0.75	0.873	0.389	6.6e-102
UNIPROTKB\|P0A8N5		505	lysU [Escherichia coli K-12 (t	0.725	0.833	0.417	2.2e-101
UNIPROTKB\|P0A8N3		505	lysS [Escherichia coli K-12 (t	0.725	0.833	0.417	7.5e-101

TAIR\|locus:2092850 OVA5 "OVULE ABORTION 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2242 (794.3 bits), Expect = 4.4e-235, Sum P(2) = 4.4e-235
 Identities = 432/547 (78%), Positives = 478/547 (87%)

Query:    34 SSTSITVSAGTRNRRAXXXXXXXXDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQ 93
             ++T+ T     RNRR+        DREA+R++R+KKVEELR +GLEPYAYKW+++HSANQ
Sbjct:    56 ATTAETSKPSGRNRRSASSSNSTSDREAIRSIRLKKVEELRGQGLEPYAYKWEKSHSANQ 115

Query:    94 LQEIYRHLANGEESNSENDHVSXXXXXXXXXXFGKLAFLTLRDDSGTIQLYCEKERLLSD 153
             LQEIY+HLANGEES++E D VS          FGKLAFLTLRDDSGTIQLYCEKERL  D
Sbjct:   116 LQEIYKHLANGEESDNEIDCVSIAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLSDD 175

Query:   154 QFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRY 213
             QF+QLK F+DIGDILG SGSMKRTEKGELS+ VNSF ILTKSLLPLPDKYHGLTD+DKRY
Sbjct:   176 QFEQLKQFIDIGDILGASGSMKRTEKGELSICVNSFSILTKSLLPLPDKYHGLTDIDKRY 235

Query:   214 RQRYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYH 273
             RQRYVDMI+ PEVADVFR+RAKIVSEIRKTVES G++EVETPVLQGAAGGAEARPFVT+H
Sbjct:   236 RQRYVDMIANPEVADVFRRRAKIVSEIRKTVESFGYLEVETPVLQGAAGGAEARPFVTFH 295

Query:   274 NSLGRDLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDY 333
             NSLGRDLYLRIATELHLKRML+GGFEK+YEIGRIFRNEG+STRHNPEFTTIEMYEAYSDY
Sbjct:   296 NSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDY 355

Query:   334 QSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGND 393
              SMM++ E IVT C++AVNGKLTIDYQG EICLERPWRRETMHNLVKE TGI+F+ELG D
Sbjct:   356 HSMMDMAELIVTQCSMAVNGKLTIDYQGTEICLERPWRRETMHNLVKEITGINFSELGED 415

Query:   394 LKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEIS 453
             L  AK+T L AL D LE KDK  I +  S+G+LLNE+FE+VVEPKLVQPTFVLDYPIEIS
Sbjct:   416 LGNAKDTVLLALQDVLEPKDKSGIRACSSLGHLLNEIFEVVVEPKLVQPTFVLDYPIEIS 475

Query:   454 PLAKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEK 513
             PLAKPHR +AGLTERFELFICGREMANAFSELTDP+DQR RLEEQVRQHN KRA AV E 
Sbjct:   476 PLAKPHRGNAGLTERFELFICGREMANAFSELTDPVDQRTRLEEQVRQHNAKRAEAVRES 535

Query:   514 SSAQEKLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAF 573
                  K  + DD SYEVTLD+DF+TALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAF
Sbjct:   536 PEPNAKKDDDDDESYEVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAF 595

Query:   574 PILKIQQ 580
             P+LK+QQ
Sbjct:   596 PVLKLQQ 602

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS

GO:0004824 "lysine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS

GO:0006430 "lysyl-tRNA aminoacylation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

TIGR_CMR\|CHY_2365 CHY_2365 "lysyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_0076 BA_0076 "lysyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

UNIPROTKB\|Q97RS9 lysS "Lysine--tRNA ligase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0578 DET_0578 "lysyl-tRNA synthetase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_2271 GSU_2271 "lysyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_0450 CJE_0450 "lysyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_0430 CBU_0430 "lysyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

UNIPROTKB\|P0A8N5 lysU [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|P0A8N3 lysS [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0B0N3	SYK_SYNWW	6, ., 1, ., 1, ., 6	0.4748	0.8224	0.9675	yes	no
A9BD62	SYK_PROM4	6, ., 1, ., 1, ., 6	0.5333	0.8362	0.9642	yes	no
A8G7C4	SYK_PROM2	6, ., 1, ., 1, ., 6	0.5142	0.8327	0.9433	yes	no
P73443	SYK_SYNY3	6, ., 1, ., 1, ., 6	0.5895	0.8586	0.9764	N/A	no
Q5HIF7	SYK_STAAC	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q7U3A4	SYK_PROMM	6, ., 1, ., 1, ., 6	0.5477	0.8344	0.9527	yes	no
P67609	SYK_STAAM	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q4L3H5	SYK_STAHJ	6, ., 1, ., 1, ., 6	0.4688	0.8327	0.9737	yes	no
Q2RM49	SYK_MOOTA	6, ., 1, ., 1, ., 6	0.4796	0.8241	0.9775	yes	no
Q3ANE6	SYK_SYNSC	6, ., 1, ., 1, ., 6	0.5394	0.8344	0.9641	yes	no
Q8NXZ0	SYK_STAAW	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q7U9X5	SYK_SYNPX	6, ., 1, ., 1, ., 6	0.5529	0.8344	0.9641	yes	no
Q53638	SYK_STAAU	6, ., 1, ., 1, ., 6	0.4766	0.8310	0.9737	yes	no
Q7UZP0	SYK_PROMP	6, ., 1, ., 1, ., 6	0.5142	0.8293	0.9394	yes	no
Q6GJF4	SYK_STAAR	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q2YVW8	SYK_STAAB	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q3M8C8	SYK_ANAVT	6, ., 1, ., 1, ., 6	0.5771	0.8379	0.8663	yes	no
P37477	SYK_BACSU	6, ., 1, ., 1, ., 6	0.4697	0.8293	0.9639	yes	no
Q7V9Q0	SYK_PROMA	6, ., 1, ., 1, ., 6	0.5229	0.8362	0.9661	yes	no
A3PFA8	SYK_PROM0	6, ., 1, ., 1, ., 6	0.5180	0.8327	0.9433	yes	no
Q0IDW9	SYK_SYNS3	6, ., 1, ., 1, ., 6	0.5542	0.8327	0.9877	yes	no
Q31KH4	SYK_SYNE7	6, ., 1, ., 1, ., 6	0.5869	0.8344	0.9603	yes	no
Q318C3	SYK_PROM9	6, ., 1, ., 1, ., 6	0.5066	0.8327	0.9433	yes	no
Q6GBX1	SYK_STAAS	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q8EU10	SYK_OCEIH	6, ., 1, ., 1, ., 6	0.4815	0.8327	0.9797	yes	no
Q49V26	SYK_STAS1	6, ., 1, ., 1, ., 6	0.4805	0.8310	0.9737	yes	no
A5GI38	SYK_SYNPW	6, ., 1, ., 1, ., 6	0.5426	0.8327	0.9877	yes	no
Q5N1D9	SYK_SYNP6	6, ., 1, ., 1, ., 6	0.5869	0.8344	0.9603	yes	no
Q5HRN7	SYK_STAEQ	6, ., 1, ., 1, ., 6	0.4661	0.8258	0.9676	yes	no
Q8YPW9	SYK_NOSS1	6, ., 1, ., 1, ., 6	0.5847	0.8379	0.8663	yes	no
Q3B0J9	SYK_SYNS9	6, ., 1, ., 1, ., 6	0.5414	0.8344	0.9641	yes	no
Q8DMA9	SYK_THEEB	6, ., 1, ., 1, ., 6	0.6076	0.8344	0.9565	yes	no
A7WYS8	SYK_STAA1	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
A7HM68	SYK_FERNB	6, ., 1, ., 1, ., 6	0.4699	0.8224	0.9371	yes	no
A5GQ58	SYK_SYNR3	6, ., 1, ., 1, ., 6	0.5310	0.8327	0.9621	yes	no
A2BZ03	SYK_PROM5	6, ., 1, ., 1, ., 6	0.5142	0.8293	0.9394	yes	no
P67610	SYK_STAAN	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q2G0Q3	SYK_STAA8	6, ., 1, ., 1, ., 6	0.4785	0.8310	0.9737	yes	no
Q3A9M2	SYK_CARHZ	6, ., 1, ., 1, ., 6	0.4970	0.8137	0.9672	yes	no
A2C629	SYK_PROM3	6, ., 1, ., 1, ., 6	0.5381	0.8344	0.9527	yes	no
A7GJY9	SYK_BACCN	6, ., 1, ., 1, ., 6	0.4573	0.8344	0.9699	yes	no
Q7NG18	SYK_GLOVI	6, ., 1, ., 1, ., 6	0.5249	0.8362	0.9758	yes	no
Q8CQV5	SYK_STAES	6, ., 1, ., 1, ., 6	0.4661	0.8258	0.9676	yes	no
B7HPY8	SYK_BACC7	6, ., 1, ., 1, ., 6	0.4612	0.8344	0.9699	yes	no
Q73FD1	SYK_BACC1	6, ., 1, ., 1, ., 6	0.4612	0.8344	0.9699	yes	no
B2J384	SYK_NOSP7	6, ., 1, ., 1, ., 6	0.5904	0.8379	0.8663	yes	no
A5D5Q4	SYK_PELTS	6, ., 1, ., 1, ., 6	0.4981	0.8396	0.9624	yes	no
Q839A8	SYK_ENTFA	6, ., 1, ., 1, ., 6	0.4678	0.8293	0.9658	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.6	0.946
3rd Layer	6.1.1	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		580
PLN02502		553	PLN02502, PLN02502, lysyl-tRNA synthetase	0.0
PRK00484		491	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	0.0
COG1190		502	COG1190, LysU, Lysyl-tRNA synthetase (class II) [T	0.0
TIGR00499		496	TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar	0.0
cd00775		329	cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c	0.0
PRK02983		1094	PRK02983, lysS, lysyl-tRNA synthetase; Provisional	1e-160
PRK12445		505	PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe	1e-135
PTZ00385		659	PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi	1e-113
PTZ00417		585	PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona	1e-111
pfam00152		345	pfam00152, tRNA-synt_2, tRNA synthetases class II	1e-107
cd00669		269	cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn	6e-78
TIGR00462		290	TIGR00462, genX, EF-P lysine aminoacylase GenX	8e-72
COG2269		322	COG2269, COG2269, Truncated, possibly inactive, ly	1e-62
PRK09350		306	PRK09350, PRK09350, poxB regulator PoxA; Provision	2e-54
cd04322		108	cd04322, LysRS_N, LysRS_N: N-terminal, anticodon r	7e-50
COG0017		435	COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas	9e-44
PRK05159		437	PRK05159, aspC, aspartyl-tRNA synthetase; Provisio	1e-43
TIGR00458		428	TIGR00458, aspS_nondisc, nondiscriminating asparty	2e-42
cd00776		322	cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As	4e-29
TIGR00459		583	TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba	9e-26
COG0173		585	COG0173, AspS, Aspartyl-tRNA synthetase [Translati	3e-22
PRK00476		588	PRK00476, aspS, aspartyl-tRNA synthetase; Validate	8e-22
PRK12820		706	PRK12820, PRK12820, bifunctional aspartyl-tRNA syn	1e-21
PLN02903		652	PLN02903, PLN02903, aminoacyl-tRNA ligase	1e-19
PTZ00401		550	PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov	6e-18
TIGR00457		453	TIGR00457, asnS, asparaginyl-tRNA synthetase	1e-17
cd00768		211	cd00768, class_II_aaRS-like_core, Class II tRNA am	8e-16
PLN02850		530	PLN02850, PLN02850, aspartate-tRNA ligase	7e-15
pfam01336		75	pfam01336, tRNA_anti, OB-fold nucleic acid binding	2e-14
cd04100		85	cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter	2e-14
cd00777		280	cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c	3e-14
PRK00476		588	PRK00476, aspS, aspartyl-tRNA synthetase; Validate	8e-14
COG0173		585	COG0173, AspS, Aspartyl-tRNA synthetase [Translati	2e-13
cd00777		280	cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c	4e-12
TIGR00459		583	TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba	1e-11
PRK03932		450	PRK03932, asnC, asparaginyl-tRNA synthetase; Valid	2e-11
PLN02903		652	PLN02903, PLN02903, aminoacyl-tRNA ligase	7e-10
cd04317		135	cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina	3e-09
PRK06462		335	PRK06462, PRK06462, asparagine synthetase A; Revie	7e-08
PRK12820		706	PRK12820, PRK12820, bifunctional aspartyl-tRNA syn	2e-06
PRK03932		450	PRK03932, asnC, asparaginyl-tRNA synthetase; Valid	3e-06
pfam00587		171	pfam00587, tRNA-synt_2b, tRNA synthetase class II	4e-05
cd04316		108	cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t	5e-05
PLN02603		565	PLN02603, PLN02603, asparaginyl-tRNA synthetase	0.001
PTZ00425		586	PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis	0.001

>gnl\|CDD\|215278 PLN02502, PLN02502, lysyl-tRNA synthetase	Back alignment and domain information

 Score =  902 bits (2332), Expect = 0.0
 Identities = 308/542 (56%), Positives = 380/542 (70%), Gaps = 30/542 (5%)

Query: 41  SAGTRNRRASSSSTSTSDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRH 100
           +A  R+R+++++   T D    RA R+KKVE LR+KG+EPY YK+D TH+A +LQE Y  
Sbjct: 40  AAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGS 99

Query: 101 LANGEESNSENDHVSVAGRVVARRAFGKLAFLTLRDDSGTIQLYCEKERLLSDQ--FDQL 158
           L NGEE    +  VSVAGR++A+RAFGKLAF  LRDD G IQLY +K+RL  D+  F++L
Sbjct: 100 LENGEELEDVS--VSVAGRIMAKRAFGKLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKL 157

Query: 159 KVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQRYV 218
              VD GDI+GV+G+  +T+KGELS+   SF +LTK LL LPDKYHGLTD + RYRQRY+
Sbjct: 158 HSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQRYL 217

Query: 219 DMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGR 278
           D+I+ PEV D+FR RAKI+S IR+ ++  GF+EVETP+L   AGGA ARPFVT+HN L  
Sbjct: 218 DLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNM 277

Query: 279 DLYLRIATELHLKRMLIGGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMN 338
           DLYLRIATELHLKR+++GGFE++YEIGR FRNEG+STRHNPEFTT E Y+AY+DY  MM 
Sbjct: 278 DLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMME 337

Query: 339 ITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETMHNLVKEATGIDFNELGNDLKVAK 398
           +TEE+V+     + G   I Y G+EI    P+RR +M +LV+EATGIDF          K
Sbjct: 338 LTEEMVSGMVKELTGSYKIKYHGIEIDFTPPFRRISMISLVEEATGIDFP------ADLK 391

Query: 399 ETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPLAKP 458
                A       K         + G LLNE+FE  +E  LVQPTFVLD+P+E+SPLAKP
Sbjct: 392 SDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKP 451

Query: 459 HRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQE 518
           HR   GLTERFELFI GRE+ANAFSELTDP+DQR R EEQV+QHN               
Sbjct: 452 HRSKPGLTERFELFINGRELANAFSELTDPVDQRERFEEQVKQHNA-------------- 497

Query: 519 KLKESDDHSYEVTLDDDFVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKI 578
                      + LD+DF TALEYG+PP  G GLGIDRLVMLLT+SASIRDVIAFP +K 
Sbjct: 498 ------GDDEAMALDEDFCTALEYGLPPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMKP 551

Query: 579 QQ 580
           Q 
Sbjct: 552 QD 553

Length = 553

>gnl\|CDD\|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial	Back alignment and domain information

>gnl\|CDD\|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain	Back alignment and domain information

>gnl\|CDD\|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N)	Back alignment and domain information

>gnl\|CDD\|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain	Back alignment and domain information

>gnl\|CDD\|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX	Back alignment and domain information

>gnl\|CDD\|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional	Back alignment and domain information

>gnl\|CDD\|239817 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS)	Back alignment and domain information

>gnl\|CDD\|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain	Back alignment and domain information

>gnl\|CDD\|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type	Back alignment and domain information

>gnl\|CDD\|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional	Back alignment and domain information

>gnl\|CDD\|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>gnl\|CDD\|215456 PLN02850, PLN02850, aspartate-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain	Back alignment and domain information

>gnl\|CDD\|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs)	Back alignment and domain information

>gnl\|CDD\|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain	Back alignment and domain information

>gnl\|CDD\|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain	Back alignment and domain information

>gnl\|CDD\|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type	Back alignment and domain information

>gnl\|CDD\|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS	Back alignment and domain information

>gnl\|CDD\|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed	Back alignment and domain information

>gnl\|CDD\|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional	Back alignment and domain information

>gnl\|CDD\|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	Back alignment and domain information

>gnl\|CDD\|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T)	Back alignment and domain information

>gnl\|CDD\|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>gnl\|CDD\|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		580
COG1190		502	LysU Lysyl-tRNA synthetase (class II) [Translation	100.0
KOG1885		560	consensus Lysyl-tRNA synthetase (class II) [Transl	100.0
PLN02502		553	lysyl-tRNA synthetase	100.0
TIGR00499		496	lysS_bact lysyl-tRNA synthetase, eukaryotic and no	100.0
PRK12445		505	lysyl-tRNA synthetase; Reviewed	100.0
PRK00484		491	lysS lysyl-tRNA synthetase; Reviewed	100.0
PTZ00417		585	lysine-tRNA ligase; Provisional	100.0
PRK02983		1094	lysS lysyl-tRNA synthetase; Provisional	100.0
PTZ00385		659	lysyl-tRNA synthetase; Provisional	100.0
TIGR00459		583	aspS_bact aspartyl-tRNA synthetase, bacterial type	100.0
TIGR00458		428	aspS_arch aspartyl-tRNA synthetase, archaeal type.	100.0
PRK05159		437	aspC aspartyl-tRNA synthetase; Provisional	100.0
COG0173		585	AspS Aspartyl-tRNA synthetase [Translation, riboso	100.0
PTZ00401		550	aspartyl-tRNA synthetase; Provisional	100.0
PLN02850		530	aspartate-tRNA ligase	100.0
TIGR00457		453	asnS asparaginyl-tRNA synthetase. In a multiple se	100.0
PRK03932		450	asnC asparaginyl-tRNA synthetase; Validated	100.0
PLN02903		652	aminoacyl-tRNA ligase	100.0
COG0017		435	AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl	100.0
PRK00476		588	aspS aspartyl-tRNA synthetase; Validated	100.0
PRK12820		706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	100.0
PLN02603		565	asparaginyl-tRNA synthetase	100.0
PTZ00425		586	asparagine-tRNA ligase; Provisional	100.0
PLN02221		572	asparaginyl-tRNA synthetase	100.0
PLN02532		633	asparagine-tRNA synthetase	100.0
cd00775		329	LysRS_core Lys_tRNA synthetase (LysRS) class II co	100.0
KOG2411		628	consensus Aspartyl-tRNA synthetase, mitochondrial	100.0
PF00152		335	tRNA-synt_2: tRNA synthetases class II (D, K and N	100.0
TIGR00462		304	genX lysyl-tRNA synthetase-like protein GenX. Many	100.0
KOG0556		533	consensus Aspartyl-tRNA synthetase [Translation, r	100.0
cd00776		322	AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class	100.0
PRK06462		335	asparagine synthetase A; Reviewed	100.0
KOG0554		446	consensus Asparaginyl-tRNA synthetase (mitochondri	100.0
PRK09350		306	poxB regulator PoxA; Provisional	100.0
cd00669		269	Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl	100.0
KOG0555		545	consensus Asparaginyl-tRNA synthetase [Translation	100.0
COG2269		322	Truncated, possibly inactive, lysyl-tRNA synthetas	100.0
cd00777		280	AspRS_core Asp tRNA synthetase (aspRS) class II co	100.0
cd04322		108	LysRS_N LysRS_N: N-terminal, anticodon recognition	99.92
cd04317		135	EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod	99.87
cd04316		108	ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a	99.79
cd04319		103	PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod	99.79
cd04320		102	AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r	99.75
cd04100		85	Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant	99.65
cd04321		86	ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a	99.64
cd04323		84	AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a	99.61
PRK09537		417	pylS pyrolysyl-tRNA synthetase; Reviewed	99.61
cd04318		82	EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod	99.6
cd00768		211	class_II_aaRS-like_core Class II tRNA amino-acyl s	99.51
TIGR02367		453	PylS pyrrolysyl-tRNA synthetase. PylS is the archa	99.48
cd00645		309	AsnA Asparagine synthetase (aspartate-ammonia liga	99.37
PF01409		247	tRNA-synt_2d: tRNA synthetases class II core domai	99.36
PTZ00213		348	asparagine synthetase A; Provisional	99.35
PRK00488		339	pheS phenylalanyl-tRNA synthetase subunit alpha; V	99.32
PRK05425		327	asparagine synthetase AsnA; Provisional	99.28
TIGR00669		330	asnA aspartate--ammonia ligase, AsnA-type. The fac	99.23
PLN02853		492	Probable phenylalanyl-tRNA synthetase alpha chain	99.21
PTZ00326		494	phenylalanyl-tRNA synthetase alpha chain; Provisio	99.21
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	99.14
COG0016		335	PheS Phenylalanyl-tRNA synthetase alpha subunit [T	99.13
TIGR00468		294	pheS phenylalanyl-tRNA synthetase, alpha subunit.	98.99
PRK04172		489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	98.92
PLN02788		402	phenylalanine-tRNA synthetase	98.85
cd00496		218	PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe	98.7
PF00587		173	tRNA-synt_2b: tRNA synthetase class II core domain	98.63
cd00670		235	Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t	98.45
cd00773		261	HisRS-like_core Class II Histidinyl-tRNA synthetas	98.44
TIGR00470		533	sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam	98.42
TIGR00469		460	pheS_mito phenylalanyl-tRNA synthetase, mitochondr	98.41
cd00772		264	ProRS_core Prolyl-tRNA synthetase (ProRS) class II	98.38
cd00774		254	GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik	98.3
cd00778		261	ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS)	98.27
cd00779		255	ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla	98.2
TIGR00442		397	hisS histidyl-tRNA synthetase. This model finds a	98.19
PRK09194		565	prolyl-tRNA synthetase; Provisional	98.12
TIGR00409		568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	98.08
PRK00037		412	hisS histidyl-tRNA synthetase; Reviewed	98.06
PLN02908		686	threonyl-tRNA synthetase	98.02
PRK08661		477	prolyl-tRNA synthetase; Provisional	98.01
cd00770		297	SerRS_core Seryl-tRNA synthetase (SerRS) class II	98.0
TIGR00414		418	serS seryl-tRNA synthetase. This model represents	97.98
PRK14799		545	thrS threonyl-tRNA synthetase; Provisional	97.98
cd00771		298	ThrRS_core Threonyl-tRNA synthetase (ThrRS) class	97.97
PRK12305		575	thrS threonyl-tRNA synthetase; Reviewed	97.92
PRK12444		639	threonyl-tRNA synthetase; Reviewed	97.9
TIGR00408		472	proS_fam_I prolyl-tRNA synthetase, family I. Proly	97.9
PRK05431		425	seryl-tRNA synthetase; Provisional	97.89
PRK12325		439	prolyl-tRNA synthetase; Provisional	97.88
TIGR00443		314	hisZ_biosyn_reg ATP phosphoribosyltransferase, reg	97.87
TIGR00418		563	thrS threonyl-tRNA synthetase. This model represen	97.86
CHL00201		430	syh histidine-tRNA synthetase; Provisional	97.84
PF13393		311	tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI	97.84
PRK00413		638	thrS threonyl-tRNA synthetase; Reviewed	97.83
COG2502		330	AsnA Asparagine synthetase A [Amino acid transport	97.81
PLN02972		763	Histidyl-tRNA synthetase	97.8
PRK12292		391	hisZ ATP phosphoribosyltransferase regulatory subu	97.79
PRK12293		281	hisZ ATP phosphoribosyltransferase regulatory subu	97.78
PLN02530		487	histidine-tRNA ligase	97.78
COG0124		429	HisS Histidyl-tRNA synthetase [Translation, riboso	97.74
PRK03991		613	threonyl-tRNA synthetase; Validated	97.73
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	97.71
PRK12420		423	histidyl-tRNA synthetase; Provisional	97.67
KOG2784		483	consensus Phenylalanyl-tRNA synthetase, beta subun	97.6
PRK12421		392	ATP phosphoribosyltransferase regulatory subunit;	97.59
PLN02837		614	threonine-tRNA ligase	97.49
PRK04173		456	glycyl-tRNA synthetase; Provisional	97.39
PRK12295		373	hisZ ATP phosphoribosyltransferase regulatory subu	97.36
cd04487		73	RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f	97.25
COG0442		500	ProS Prolyl-tRNA synthetase [Translation, ribosoma	97.21
PRK12294		272	hisZ ATP phosphoribosyltransferase regulatory subu	97.18
PLN02678		448	seryl-tRNA synthetase	97.15
PLN02320		502	seryl-tRNA synthetase	96.97
cd04485		84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	96.81
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	96.8
TIGR00415		520	serS_MJ seryl-tRNA synthetase, Methanococcus janna	96.79
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	96.78
PF13742		99	tRNA_anti_2: OB-fold nucleic acid binding domain	96.75
cd04490		79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	96.71
cd04483		92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	96.55
PRK07373		449	DNA polymerase III subunit alpha; Reviewed	96.46
PRK00960		517	seryl-tRNA synthetase; Provisional	96.44
cd04482		91	RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara	96.31
PRK05672		1046	dnaE2 error-prone DNA polymerase; Validated	95.91
COG0441		589	ThrS Threonyl-tRNA synthetase [Translation, riboso	95.8
COG0172		429	SerS Seryl-tRNA synthetase [Translation, ribosomal	95.69
cd04492		83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	95.64
PRK06826		1151	dnaE DNA polymerase III DnaE; Reviewed	95.61
PF10451		256	Stn1: Telomere regulation protein Stn1; InterPro:	95.57
COG0423		558	GRS1 Glycyl-tRNA synthetase (class II) [Translatio	95.4
PRK07374		1170	dnaE DNA polymerase III subunit alpha; Validated	95.3
PRK06920		1107	dnaE DNA polymerase III DnaE; Reviewed	95.28
KOG2324		457	consensus Prolyl-tRNA synthetase [Translation, rib	95.04
PRK05673		1135	dnaE DNA polymerase III subunit alpha; Validated	95.03
PRK09616		552	pheT phenylalanyl-tRNA synthetase subunit beta; Re	94.93
COG3705		390	HisZ ATP phosphoribosyltransferase involved in his	94.55
PRK07279		1034	dnaE DNA polymerase III DnaE; Reviewed	94.53
KOG1936		518	consensus Histidyl-tRNA synthetase [Translation, r	94.26
PF04076		103	BOF: Bacterial OB fold (BOF) protein; InterPro: IP	93.84
TIGR00389		551	glyS_dimeric glycyl-tRNA synthetase, dimeric type.	93.69
COG1107		715	Archaea-specific RecJ-like exonuclease, contains D	93.37
PRK14894		539	glycyl-tRNA synthetase; Provisional	93.16
cd04474		104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	92.74
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	92.32
PRK15491		374	replication factor A; Provisional	92.12
cd04488		75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	91.52
TIGR00156		126	conserved hypothetical protein TIGR00156. As of th	91.49
COG3111		128	Periplasmic protein with OB-fold [Function unknown	91.34
PRK00286		438	xseA exodeoxyribonuclease VII large subunit; Revie	91.22
PRK06461		129	single-stranded DNA-binding protein; Reviewed	90.08
cd00769		198	PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR	89.94
TIGR00237		432	xseA exodeoxyribonuclease VII, large subunit. This	89.78
PF12869		144	tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442	89.77
PRK10053		130	hypothetical protein; Provisional	89.66
COG5235		258	RFA2 Single-stranded DNA-binding replication prote	89.07
PRK07217		311	replication factor A; Reviewed	88.93
COG1570		440	XseA Exonuclease VII, large subunit [DNA replicati	88.78
cd04484		82	polC_OBF polC_OBF: A subfamily of OB folds corresp	88.23
PF15072		86	DUF4539: Domain of unknown function (DUF4539)	88.09
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	87.8
PRK14699		484	replication factor A; Provisional	87.66
COG4085		204	Predicted RNA-binding protein, contains TRAM domai	85.83
cd04479		101	RPA3 RPA3: A subfamily of OB folds similar to huma	85.07
PRK13480		314	3'-5' exoribonuclease YhaM; Provisional	84.72
KOG2783		436	consensus Phenylalanyl-tRNA synthetase [Translatio	84.13
PRK07218		423	replication factor A; Provisional	83.82
PRK07459		121	single-stranded DNA-binding protein; Provisional	83.66
TIGR00471		551	pheT_arch phenylalanyl-tRNA synthetase, beta subun	83.46
KOG1035		1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	83.32
PRK12366		637	replication factor A; Reviewed	82.7
cd05707		68	S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a	82.59
PRK07211		485	replication factor A; Reviewed	82.38
KOG3108		265	consensus Single-stranded DNA-binding replication	82.15
COG2024		536	Phenylalanyl-tRNA synthetase alpha subunit (archae	81.52
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	81.45
PRK07135		973	dnaE DNA polymerase III DnaE; Validated	80.42
PF00436		104	SSB: Single-strand binding protein family; InterPr	80.23

>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=4.1e-142  Score=1125.90  Aligned_cols=496  Identities=52%  Similarity=0.872  Sum_probs=466.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHcCCCCCCCCCccCCCHHHHHHHHhhccCCccCCCCCCEEEEEEEEEeEecCCCeEEEEEe
Q 008040           56 TSDREAVRALRIKKVEELRSKGLEPYAYKWDRTHSANQLQEIYRHLANGEESNSENDHVSVAGRVVARRAFGKLAFLTLR  135 (580)
Q Consensus        56 ~~~~~e~~~~R~~kl~~L~~~g~~pyp~~~~~t~~~~~i~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~gk~~F~~Lr  135 (580)
                      ....+++.+.|++|+++|+++|++|||+.|.++|++.+++++|.+....+..+ ....|+|+|||+++|.+||++|++|.
T Consensus         7 ~~~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~-~~~~v~vAGRi~~~R~~GK~~F~~i~   85 (502)
T COG1190           7 ARDLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKTKEELEA-LNIEVSVAGRIMTIRNMGKASFADLQ   85 (502)
T ss_pred             cccCcHHHHHHHHHHHHHHHcCCCCCCCcCcccccHHHHHHHHhccchhhhhh-ccceeEEecceeeecccCceeEEEEe
Confidence            45668999999999999999999999999999999999999998765443321 23359999999999999999999999


Q ss_pred             eCCeeEEEEEecCccChHHHHhhhcccCCCcEEEEEeEEEecCCceeEEEEeEEEEccccCCCCCCCCCCCCChhhcccc
Q 008040          136 DDSGTIQLYCEKERLLSDQFDQLKVFVDIGDILGVSGSMKRTEKGELSVLVNSFVILTKSLLPLPDKYHGLTDVDKRYRQ  215 (580)
Q Consensus       136 D~sg~iQvv~~~~~~~~~~~~~~~~~l~~gd~v~v~G~v~~t~~ge~el~~~~i~vls~a~~plP~~~~~l~d~e~r~r~  215 (580)
                      |++|+||++++++.++++.|+.+.+.+++||+|+|+|.+++|++||++|.|+++++|+||+.|||+||||++|+|+|||+
T Consensus        86 d~~gkiQ~yi~k~~~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR~  165 (502)
T COG1190          86 DGSGKIQLYVNKDEVGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQ  165 (502)
T ss_pred             cCCceEEEEEeccccchhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHHH
Confidence            99999999999998888899987777899999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeeecCHHHHHHHHHHHHHHHHHHHHHHhCCCeeecCceeeccCCCCCCCceeeccCCCCeeEEEEecHHHHHHHHHh
Q 008040          216 RYVDMISKPEVADVFRKRAKIVSEIRKTVESLGFVEVETPVLQGAAGGAEARPFVTYHNSLGRDLYLRIATELHLKRMLI  295 (580)
Q Consensus       216 R~ldl~~~~~~~~~~~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~llv  295 (580)
                      |||||++|++.+++|..||+|+++||+||+++||+|||||+|++.+|||.|+||.||||+++.++|||||||||||+|+|
T Consensus       166 RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliV  245 (502)
T COG1190         166 RYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIV  245 (502)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEecccccCCCCCCCCccceeeeeEeecCCHHHHHHHHHHHHHHHHHHHhCCceeecCceeecCCCCcceeeH
Q 008040          296 GGFEKIYEIGRIFRNEGLSTRHNPEFTTIEMYEAYSDYQSMMNITEEIVTHCALAVNGKLTIDYQGVEICLERPWRRETM  375 (580)
Q Consensus       296 ~g~~rVfeIg~~FR~E~~~~rH~pEFtmlE~e~a~~d~~d~m~l~E~li~~~~~~v~~~~~~~~~~~~i~~~~pf~rit~  375 (580)
                      |||+||||||++|||||+|++|||||||||+|+||+||+|+|+++|+||+++++.+.|+..+.|.+.++||++||+|++|
T Consensus       246 GG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~a~~v~gt~~v~y~~~~id~~~pf~ri~m  325 (502)
T COG1190         246 GGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKELAKEVNGTTKVTYGGQEIDFSKPFKRITM  325 (502)
T ss_pred             cCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCeEEEECCEeEecCCCeeeeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCCCCccccccCCCCcHHhHHHHHHHHHhcCCCCCcEEEEecCCCCCcc
Q 008040          376 HNLVKEATGIDFNELGNDLKVAKETTLRALGDGLENKDKFVIESSPSVGNLLNEVFEIVVEPKLVQPTFVLDYPIEISPL  455 (580)
Q Consensus       376 ~eai~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~lg~~l~~~~~~~ve~~l~~P~fV~dyP~~~~pf  455 (580)
                      .||+++++|+++.... +.+++++++++ .|++....     ..| .+|++++++|+.+||+++.+||||+|||.++|||
T Consensus       326 ~dal~e~~g~~~~~~~-~~e~~~~~ak~-~~i~~~~~-----~~~-~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPL  397 (502)
T COG1190         326 VDALKEYLGVDFDDLF-DDEEAKELAKK-HGIEVEKY-----GTW-GLGHLLNELFEELVEAKLIQPTFVTDHPVEISPL  397 (502)
T ss_pred             HHHHHHHhCccccccC-CHHHHHHHHHH-hCCCcCcc-----ccc-cHHHHHHHHHHHHhhhhhcCCceeecCccccCcc
Confidence            9999999998644333 67899999998 88743210     013 3599999999999999999999999999999999


Q ss_pred             ccccCCCCCceeEEEEEEcCEeecccccccCCHHHHHHHHHHHHHhhhhhhHhhhhhhhhhHHhhhcCCccccccCCcHH
Q 008040          456 AKPHRRHAGLTERFELFICGREMANAFSELTDPLDQRARLEEQVRQHNEKRAAAVSEKSSAQEKLKESDDHSYEVTLDDD  535 (580)
Q Consensus       456 a~~~~~~~~~~~rFdL~i~G~Ei~ng~~el~dp~~q~~rf~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~e~~~~~~d~~  535 (580)
                      ||+|+++|++++||||||+|.||||||+|||||.+|++||++|+++                  ++.||+|++.  +|++
T Consensus       398 ak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF~~Q~~~------------------k~~Gddea~~--~Ded  457 (502)
T COG1190         398 AKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERFEAQVEE------------------KEAGDDEAME--LDED  457 (502)
T ss_pred             ccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHHHHHHHH------------------HHcCCccccc--cCHH
Confidence            9999999999999999999999999999999999999999999887                  7889999997  9999


Q ss_pred             HHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccCCcCCCCC
Q 008040          536 FVTALEYGMPPASGMGLGIDRLVMLLTNSASIRDVIAFPILKIQQ  580 (580)
Q Consensus       536 yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~~~  580 (580)
                      ||+||+||||||||+|||||||||+|||+.||||||+||.||+++
T Consensus       458 fv~ALeyGmPPTgG~GiGIDRLvMllT~~~sIRdVilFP~mr~~~  502 (502)
T COG1190         458 FVEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVILFPAMRPEK  502 (502)
T ss_pred             HHHHHhcCCCCCCCccccHHHHHHHHcCCCchhheecccccCCCC
Confidence            999999999999999999999999999999999999999999874

>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02502 lysyl-tRNA synthetase	Back alignment and domain information

>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial	Back alignment and domain information

>PRK12445 lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK00484 lysS lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00417 lysine-tRNA ligase; Provisional	Back alignment and domain information

>PRK02983 lysS lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>PTZ00385 lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type	Back alignment and domain information

>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type	Back alignment and domain information

>PRK05159 aspC aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00401 aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02850 aspartate-tRNA ligase	Back alignment and domain information

>TIGR00457 asnS asparaginyl-tRNA synthetase	Back alignment and domain information

>PRK03932 asnC asparaginyl-tRNA synthetase; Validated	Back alignment and domain information

>PLN02903 aminoacyl-tRNA ligase	Back alignment and domain information

>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK00476 aspS aspartyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional	Back alignment and domain information

>PLN02603 asparaginyl-tRNA synthetase	Back alignment and domain information

>PTZ00425 asparagine-tRNA ligase; Provisional	Back alignment and domain information

>PLN02221 asparaginyl-tRNA synthetase	Back alignment and domain information

>PLN02532 asparagine-tRNA synthetase	Back alignment and domain information

>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain	Back alignment and domain information

>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX	Back alignment and domain information

>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain	Back alignment and domain information

>PRK06462 asparagine synthetase A; Reviewed	Back alignment and domain information

>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09350 poxB regulator PoxA; Provisional	Back alignment and domain information

>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain	Back alignment and domain information

>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain	Back alignment and domain information

>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS)	Back alignment and domain information

>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS	Back alignment and domain information

>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS)	Back alignment and domain information

>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs)	Back alignment and domain information

>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs	Back alignment and domain information

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS	Back alignment and domain information

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain	Back alignment and domain information

>TIGR02367 PylS pyrrolysyl-tRNA synthetase	Back alignment and domain information

>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia	Back alignment and domain information

>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PTZ00213 asparagine synthetase A; Provisional	Back alignment and domain information

>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated	Back alignment and domain information

>PRK05425 asparagine synthetase AsnA; Provisional	Back alignment and domain information

>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type	Back alignment and domain information

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain	Back alignment and domain information

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit	Back alignment and domain information

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional	Back alignment and domain information

>PLN02788 phenylalanine-tRNA synthetase	Back alignment and domain information

>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain	Back alignment and domain information

>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes	Back alignment and domain information

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain	Back alignment and domain information

>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	Back alignment and domain information

>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase	Back alignment and domain information

>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial	Back alignment and domain information

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain	Back alignment and domain information

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain	Back alignment and domain information

>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain	Back alignment and domain information

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain	Back alignment and domain information

>TIGR00442 hisS histidyl-tRNA synthetase	Back alignment and domain information

>PRK09194 prolyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II	Back alignment and domain information

>PRK00037 hisS histidyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02908 threonyl-tRNA synthetase	Back alignment and domain information

>PRK08661 prolyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain	Back alignment and domain information

>TIGR00414 serS seryl-tRNA synthetase	Back alignment and domain information

>PRK14799 thrS threonyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain	Back alignment and domain information

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12444 threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I	Back alignment and domain information

>PRK05431 seryl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12325 prolyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit	Back alignment and domain information

>TIGR00418 thrS threonyl-tRNA synthetase	Back alignment and domain information

>CHL00201 syh histidine-tRNA synthetase; Provisional	Back alignment and domain information

>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A	Back alignment and domain information

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]	Back alignment and domain information

>PLN02972 Histidyl-tRNA synthetase	Back alignment and domain information

>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional	Back alignment and domain information

>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional	Back alignment and domain information

>PLN02530 histidine-tRNA ligase	Back alignment and domain information

>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK03991 threonyl-tRNA synthetase; Validated	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>PRK12420 histidyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional	Back alignment and domain information

>PLN02837 threonine-tRNA ligase	Back alignment and domain information

>PRK04173 glycyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional	Back alignment and domain information

>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ	Back alignment and domain information

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional	Back alignment and domain information

>PLN02678 seryl-tRNA synthetase	Back alignment and domain information

>PLN02320 seryl-tRNA synthetase	Back alignment and domain information

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain	Back alignment and domain information

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit	Back alignment and domain information

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)	Back alignment and domain information

>PRK07373 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>PRK00960 seryl-tRNA synthetase; Provisional	Back alignment and domain information

>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PRK05672 dnaE2 error-prone DNA polymerase; Validated	Back alignment and domain information

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)	Back alignment and domain information

>PRK06826 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA	Back alignment and domain information

>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK07374 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed	Back alignment and domain information

>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]	Back alignment and domain information

>PRK07279 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif)	Back alignment and domain information

>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type	Back alignment and domain information

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK14894 glycyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

>TIGR00156 conserved hypothetical protein TIGR00156	Back alignment and domain information

>COG3111 Periplasmic protein with OB-fold [Function unknown]	Back alignment and domain information

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain	Back alignment and domain information

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit	Back alignment and domain information

>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold []	Back alignment and domain information

>PRK10053 hypothetical protein; Provisional	Back alignment and domain information

>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07217 replication factor A; Reviewed	Back alignment and domain information

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC)	Back alignment and domain information

>PF15072 DUF4539: Domain of unknown function (DUF4539)	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]	Back alignment and domain information

>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14)	Back alignment and domain information

>PRK13480 3'-5' exoribonuclease YhaM; Provisional	Back alignment and domain information

>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK07459 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit	Back alignment and domain information

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair]	Back alignment and domain information

>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PRK07135 dnaE DNA polymerase III DnaE; Validated	Back alignment and domain information

>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		580
3e9h_A		493	Lysyl-Trna Synthetase From Bacillus Stearothermophi		1e-129
4ex5_A		529	Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr		1e-114
1lyl_A		504	Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe		1e-109
1bbu_A		504	Lysyl-Trna Synthetase (Lyss) Complexed With Lysine		1e-108
4dpg_A		513	Crystal Structure Of Human Lysrs: P38/aimp2 Complex		2e-91
3bju_A		521	Crystal Structure Of Tetrameric Form Of Human Lysyl		3e-91
3a5z_A		328	Crystal Structure Of Escherichia Coli Genx In Compl		2e-36
3g1z_A		326	Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe		2e-36
3a5y_A		345	Crystal Structure Of Genx From Escherichia Coli In		2e-36
1wyd_A		429	Crystal Structure Of Aspartyl-Trna Synthetase From		4e-22
1eqr_A		590	Crystal Structure Of Free Aspartyl-Trna Synthetase		8e-21
1eqr_A		590	Crystal Structure Of Free Aspartyl-Trna Synthetase		8e-08
1c0a_A		585	Crystal Structure Of The E. Coli Aspartyl-Trna Synt		9e-21
1c0a_A		585	Crystal Structure Of The E. Coli Aspartyl-Trna Synt		8e-08
1asy_A		490	Class Ii Aminoacyl Transfer Rna Synthetases: Crysta		2e-20
1eov_A		487	Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1		2e-20
1b8a_A		438	Aspartyl-trna Synthetase Length = 438		4e-18
1b8a_A		438	Aspartyl-trna Synthetase Length = 438		6e-05
3nel_A		438	Aspartyl-Trna Synthetase Complexed With Aspartic Ac		4e-18
3nel_A		438	Aspartyl-Trna Synthetase Complexed With Aspartic Ac		6e-05
3i7f_A		548	Aspartyl Trna Synthetase From Entamoeba Histolytica		3e-15
1x54_A		434	Crystal Structure Of Asparaginyl-trna Synthetase Fr		1e-10
1efw_A		580	Crystal Structure Of Aspartyl-Trna Synthetase From		3e-10
1efw_A		580	Crystal Structure Of Aspartyl-Trna Synthetase From		4e-08
4ah6_A		617	Human Mitochondrial Aspartyl-Trna Synthetase Length		1e-09
4ah6_A		617	Human Mitochondrial Aspartyl-Trna Synthetase Length		1e-08
1krs_A		120	Solution Structure Of The Anticodon Binding Domain		2e-08
1n9w_A		422	Crystal Structure Of The Non-Discriminating And Arc		1e-06
3m4p_A		456	Entamoeba Histolytica Asparaginyl-Trna Synthetase (		5e-05

>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493