Citrus Sinensis ID: 008054

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58

MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR

ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc

cccHHHHEcccccccccccEEHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHcc

mgsclmektsldddEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDyqfsgledndgedgedsyyaneagelsfdyrdnkqgldVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidpaerIRQVQqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqkkedrdygdahlsehsglksqsllkesdsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssgpitytelPQIVSGllshapvpqtktsprvsptaspplvsspriselhelprppnafatkpakssglvghsaplmfrnqehtstnknpsmasytasplpipplivsrsfsipsssQKAMALHVSKflespkvveksegvssppltpislanvkpVSIVSEVSsqsaqnqr

mgsclmektsldddeeSRKVLLMLGEVQFELQKLVDNYRSNIFLtitnpsesllnELRTVEDMKRQCDEKRNVCEYVMAQQrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAgelsfdyrdnkQGLDVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidPAERIRQVqqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqKKEDRDYGDAHLsehsglksqslLKESDsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssGPITYTELPQIVSGLLSHAPVPQTktsprvsptasppLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKvveksegvssppltpislanvkpVSIVSevssqsaqnqr

MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSgledndgedgedSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQassgpltsksssskpalsssgPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVsrsfsipsssQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR

*******************VLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELR*************NVCEYV**********************************ARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSG*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

*GSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCE*******************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEA***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

***************ESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQ**************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGE***********SFSAPIFPERKIDPAER***********PSTYVLPTPIDAKVPISS***************************************************************PLRDGLALPQLDTLNSSDTKK************************GPITYTELPQIVSGLLSHAPV*******************SPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFS********MALHVSKFLESP***********PPLTPISLANVKPVSIV************

**SCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREK*********SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE************ANEAGELSFDYRDNK*********************************************************************I***QQSSARQPSTYVLPTPIDA***********************************************************************************************************************************************************P*IS***E*PRPPN******************************************LPIPPLIVSRSFSIPSSSQKAMALHVSK*********************************************

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MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGExxxxxxxxxxxxxxxxxxxxxCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		579	2.2.26 [Sep-21-2011]
O22799		623	Uncharacterized protein A	yes	no	0.886	0.823	0.480	1e-118

>sp\|O22799\|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2	Back alignment and function desciption

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 284/591 (48%), Positives = 374/591 (63%), Gaps = 78/591 (13%)

Query: 1   MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60
           +G+CL+EKT+L+DDEES +VL+MLG++QFELQKLVD YRS+IF TIT PSESLLNELR V
Sbjct: 70  LGACLLEKTALNDDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITIPSESLLNELRIV 129

Query: 61  EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLK 120
           E+M+R CDEKRNV E ++ +QREKG+SK GKGE+ S  QQLQ A+D+YE E  L VFRLK
Sbjct: 130 EEMQRLCDEKRNVYEGMLTRQREKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLK 188

Query: 121 SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL----- 175
           SLKQGQ RSLLTQAARHHAAQL FF+K   SLE VD HV++V E QHIDY FSGL     
Sbjct: 189 SLKQGQTRSLLTQAARHHAAQLCFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDG 248

Query: 176 ------EDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQAS 229
                  +NDG +  D       GELSF+YR N +  D  S++  S E+ + D++FPQ  
Sbjct: 249 DDEIENNENDGSEVHDD------GELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIG 302

Query: 230 TVENAEVNLDKNPGEYQASH---RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPS 285
               A+ N +   G Y+ SH   R+ R  S SAP+FPE R   P+E++ +++ +  R+ +
Sbjct: 303 GPYTAQENEE---GNYRKSHSFRRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFN 359

Query: 286 TYVLPTPIDAKVPISSSVAPRTR---PSNPS-GRTYNLSHSSPLEQKKEDRDYGDAHLSE 341
           TY LPTP++     SS+ +P  +    SNP+   T  + +SSPLE +      G A +S 
Sbjct: 360 TYALPTPVETTRSPSSTTSPGHKNVGSSNPTKAITKQIWYSSPLETR------GPAKVSS 413

Query: 342 HS--GLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKS 399
            S   LK Q +L+ES+  N S  PPPL DGL   +L TL        K ++ SGPLTSK 
Sbjct: 414 RSMVALKEQ-VLRESN-KNTSRLPPPLADGLLFSRLGTL--------KRRSFSGPLTSKP 463

Query: 400 SSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTS--PRV--SPTASPPLVSSPRISE 455
             +KP  ++S          + SG     P+P+   S  P+V  SPTASP  VS+P+ISE
Sbjct: 464 LPNKPLSTTS---------HLYSG-----PIPRNPVSKLPKVSSSPTASPTFVSTPKISE 509

Query: 456 LHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVS 515
           LHELPRPP   +T   KSS  +G+SAPL+ R+Q  +       + + +ASPLPIPP I +
Sbjct: 510 LHELPRPPPRSST---KSSRELGYSAPLVSRSQLLSK-----PLITNSASPLPIPPAI-T 560

Query: 516 RSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSI 566
           RSFSIP+S+ +A  L +SK      +  K  G  SPPLTP+SL +  P ++
Sbjct: 561 RSFSIPTSNLRASDLDMSK----TSLGTKKLGTPSPPLTPMSLIHPPPQAL 607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,367,820
Number of Sequences: 539616
Number of extensions: 8993447
Number of successful extensions: 33624
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 869
Number of HSP's that attempted gapping in prelim test: 30918
Number of HSP's gapped (non-prelim): 2372
length of query: 579
length of database: 191,569,459
effective HSP length: 123
effective length of query: 456
effective length of database: 125,196,691
effective search space: 57089691096
effective search space used: 57089691096
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
255543639		656	conserved hypothetical protein [Ricinus	0.986	0.870	0.703	0.0
296082302		643	unnamed protein product [Vitis vinifera]	0.951	0.856	0.679	0.0
359488563		700	PREDICTED: uncharacterized protein At2g3	0.979	0.81	0.626	0.0
224129244		625	predicted protein [Populus trichocarpa]	0.911	0.844	0.647	0.0
224055789		649	predicted protein [Populus trichocarpa]	0.982	0.876	0.642	1e-177
356560450		637	PREDICTED: uncharacterized protein At2g3	0.934	0.849	0.578	1e-167
357508303		628	hypothetical protein MTR_7g083240 [Medic	0.939	0.866	0.584	1e-156
356570208		620	PREDICTED: uncharacterized protein At2g3	0.932	0.870	0.591	1e-156
296088724		651	unnamed protein product [Vitis vinifera]	0.970	0.863	0.529	1e-143
225425164		653	PREDICTED: uncharacterized protein At2g3	0.970	0.860	0.527	1e-142

>gi\|255543639\|ref\|XP_002512882.1\| conserved hypothetical protein [Ricinus communis] gi\|223547893\|gb\|EEF49385.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/584 (70%), Positives = 472/584 (80%), Gaps = 13/584 (2%)

Query: 1   MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60
           MGSCL+EKT+L DDE+S +VLLMLG+VQFELQKLVD+YRS+IFLTITNPSESLLNELRTV
Sbjct: 71  MGSCLLEKTALHDDEQSGRVLLMLGKVQFELQKLVDSYRSHIFLTITNPSESLLNELRTV 130

Query: 61  EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLK 120
           EDMKRQCDEKRNV EY++AQQ+EKGKSKSGKGES +L Q+L+ A+DEY+EEA LCVFRLK
Sbjct: 131 EDMKRQCDEKRNVYEYMVAQQKEKGKSKSGKGESFTL-QELRTAHDEYDEEATLCVFRLK 189

Query: 121 SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL---ED 177
           SLKQGQ RSLLTQAARHHAAQLNFFRKG KSLEAVD HV++VAE+QHIDYQFSGL     
Sbjct: 190 SLKQGQSRSLLTQAARHHAAQLNFFRKGLKSLEAVDDHVKIVAEQQHIDYQFSGLEDDGR 249

Query: 178 NDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVN 237
            DGED +D   ANE  ELSFDYR+NKQG DV+S SR SMEVDD D+SFPQAS  ENAE+N
Sbjct: 250 EDGEDDDDIGDANEGRELSFDYRENKQGHDVISASRNSMEVDDEDLSFPQASFTENAELN 309

Query: 238 LDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKV 297
            DK+ G  QAS RE R  S SAPIFPERK DP ERIR + QSSAR+ +TYVLPTPIDAK 
Sbjct: 310 PDKSQGGLQASLREPRPGSHSAPIFPERKSDPIERIR-LMQSSARKSNTYVLPTPIDAKS 368

Query: 298 PISS----SVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKE 353
           PISS    SVA  TRPS+ SGRT+NL HSSPLEQKK ++D GD HLSE + LK++S  K+
Sbjct: 369 PISSRTSGSVA-NTRPSDFSGRTHNLWHSSPLEQKKHEKDPGDYHLSELTALKTRSAHKD 427

Query: 354 SDSNNAST-RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPI 412
           S  N+ ST  PPPL +G++LP LD  N+SD KKIK Q+ SGP+TSK  S+KPALS+SGPI
Sbjct: 428 SSINSTSTLLPPPLVEGISLPHLDMYNASDNKKIKRQSFSGPITSKPWSTKPALSASGPI 487

Query: 413 TYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAK 472
              ELPQ VSG+ S   +PQ  TSP+VSPTASPPL SSPRISELHELPRPP  F TKPAK
Sbjct: 488 FSNELPQQVSGVPSRVTIPQN-TSPKVSPTASPPLASSPRISELHELPRPPGNFVTKPAK 546

Query: 473 SSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHV 532
           SS  VGHSAPL+ RN EH+ T +  S  +  ASPLPIPPLIV RSFSIPSSSQ+AM +HV
Sbjct: 547 SSAPVGHSAPLV-RNPEHSGTIRVSSGVTNLASPLPIPPLIVPRSFSIPSSSQRAMTIHV 605

Query: 533 SKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQ 576
           SK +ES ++ +K+E V SPPLTPISLAN+K  S +SE+   S Q
Sbjct: 606 SKSVESLQMPDKTEEVDSPPLTPISLANLKTASTISEIIPHSGQ 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296082302\|emb\|CBI21307.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488563\|ref\|XP_002275111.2\| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129244\|ref\|XP_002328926.1\| predicted protein [Populus trichocarpa] gi\|222839356\|gb\|EEE77693.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224055789\|ref\|XP_002298654.1\| predicted protein [Populus trichocarpa] gi\|222845912\|gb\|EEE83459.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356560450\|ref\|XP_003548505.1\| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]	Back alignment and taxonomy information

>gi\|357508303\|ref\|XP_003624440.1\| hypothetical protein MTR_7g083240 [Medicago truncatula] gi\|355499455\|gb\|AES80658.1\| hypothetical protein MTR_7g083240 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356570208\|ref\|XP_003553282.1\| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]	Back alignment and taxonomy information

>gi\|296088724\|emb\|CBI38174.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225425164\|ref\|XP_002263726.1\| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		579
TAIR\|locus:2088389		614	AT3G26910 "AT3G26910" [Arabido	0.571	0.539	0.46	4.7e-99
TAIR\|locus:2051058		623	AT2G33490 "AT2G33490" [Arabido	0.766	0.712	0.450	3.3e-86
TAIR\|locus:2163061		586	AT5G41100 "AT5G41100" [Arabido	0.566	0.559	0.478	5.2e-75
ASPGD\|ASPL0000012800		961	chiA [Emericella nidulans (tax	0.424	0.255	0.247	0.00074

TAIR\|locus:2088389 AT3G26910 "AT3G26910" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 702 (252.2 bits), Expect = 4.7e-99, Sum P(2) = 4.7e-99
 Identities = 161/350 (46%), Positives = 215/350 (61%)

Query:     1 MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60
             MGSCL E+ +  +DEES ++L MLG+VQ ELQ+L+D YRS+IF TIT+PSE+LL +LR V
Sbjct:    73 MGSCL-EQIAPHNDEESSRILFMLGKVQSELQRLLDTYRSHIFETITSPSEALLKDLRYV 131

Query:    61 EDMKRQCDEKRNVCEYVMAQQRXXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLK 120
             EDMK+QCD KRNV E  + +++              +  + + A  E+ +EA +C+FRLK
Sbjct:   132 EDMKQQCDGKRNVYEMSLVKEKGRPKSSKGERH---IPPESRPAYSEFHDEATMCIFRLK 188

Query:   121 SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXXXX 180
             SLK+GQ RSLL QA RHH AQ+  F  G KSLEAV+ HV++  E+QHID   S       
Sbjct:   189 SLKEGQARSLLIQAVRHHTAQMRLFHTGLKSLEAVERHVKVAVEKQHIDCDLSVHGNEME 248

Query:   181 XXXXXS---YYANEAGELSFDYRDNKQGLDVVSTSRK-SMEVDDVDVSFPQASTVENAEV 236
                       Y N  GELSFDYR N+Q ++  S S   + ++DD D+SFP+ ST   A V
Sbjct:   249 ASEDDDDDGRYMNREGELSFDYRTNEQKVEASSLSTPWATKMDDTDLSFPRPSTTRPAAV 308

Query:   237 NLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAK 296
             N D    EY  S R++  SS SAP+FPE+K D +ER+RQ   S     + YVLPTP D++
Sbjct:   309 NADHRE-EYPVSTRDKYLSSHSAPLFPEKKPDVSERLRQANPSF----NAYVLPTPNDSR 363

Query:   297 V--PISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSG 344
                P+S ++ PR  P+N S    N+ HSSPLE  K  +D  DA  +   G
Sbjct:   364 YSKPVSQALNPR--PTNHSAG--NIWHSSPLEPIKSGKDGKDAESNSFYG 409

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR\|locus:2051058 AT2G33490 "AT2G33490" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2163061 AT5G41100 "AT5G41100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000012800 chiA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22799	Y2349_ARATH	No assigned EC number	0.4805	0.8860	0.8234	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		579
cd07307		194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	9e-18
pfam03114		230	pfam03114, BAR, BAR domain	3e-04

>gnl\|CDD\|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature	Back alignment and domain information

 Score = 81.3 bits (201), Expect = 9e-18
 Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 15/164 (9%)

Query: 1   MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRT 59
           +G  L + ++ D  E     L   G++Q EL++  D     +   +  P +  L  +L+ 
Sbjct: 40  LGKELPDLSNTDLGE----ALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKE 95

Query: 60  VEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVF 117
           ++  +++ D+ R   +Y  A+++ K   K  K  S     +++LQ A ++YEE     + 
Sbjct: 96  IKKRRKKLDKARL--DYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIE 153

Query: 118 RLKSLKQGQ---YRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH 158
            L  L++ +   + SLL         Q  FF++  K LE +  +
Sbjct: 154 DLNKLEEKRKELFLSLLLSFIEA---QSEFFKEVLKILEQLLPY 194

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

>gnl\|CDD\|145973 pfam03114, BAR, BAR domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		579
cd07642		215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07640		213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07604		215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07641		215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07603		200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.74
cd07634		207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	99.72
cd07639		200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	99.68
cd07606		202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	99.67
cd07601		215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	99.67
cd07307		194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.63
KOG0521		785	consensus Putative GTPase activating proteins (GAP	99.48
PF03114		229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	99.47
cd07637		200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	99.43
cd07638		200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.05
smart00721		239	BAR BAR domain.	99.04
cd07635		207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	99.01
cd07631		215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.98
cd07602		207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	98.94
cd07595		244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	98.94
cd07632		215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.89
cd07592		223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	98.89
cd07594		229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	98.75
cd07593		215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	98.75
cd07636		207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	98.7
cd07600		242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	98.67
cd07618		246	BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.66
cd07613		223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	98.62
cd07616		229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	98.62
cd07619		248	BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of	98.61
KOG1118		366	consensus Lysophosphatidic acid acyltransferase en	98.61
cd07615		223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	98.59
cd07614		223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	98.56
cd07620		257	BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.54
cd07633		207	BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of	98.4
cd07617		220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	98.38
cd07590		225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	97.71
PF10455		289	BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr	97.6
PF08397		219	IMD: IRSp53/MIM homology domain; InterPro: IPR0136	97.49
cd07596		218	BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So	97.1
cd07591		224	BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o	97.08
cd07609		214	BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domai	96.52
PF09325		236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	96.37
cd07588		211	BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma	95.81
KOG3771		460	consensus Amphiphysin [Intracellular trafficking,	95.79
cd07627		216	BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of	95.71
cd07624		200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	95.69
cd07589		195	BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of	95.57
cd07611		211	BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR)	94.93
cd07643		231	I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I	94.78
cd07599		216	BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o	94.55
cd07628		185	BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of	94.32
cd07623		224	BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of	93.85
cd07612		211	BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B	93.76
PF13805		271	Pil1: Eisosome component PIL1; PDB: 3PLT_B.	93.71
cd07605		223	I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5	93.32
cd07621		219	BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of	93.05
PF06456		229	Arfaptin: Arfaptin-like domain; InterPro: IPR01050	93.0
cd07598		211	BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of	91.58
cd07660		201	BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain	91.44
cd07610		191	FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or	90.5
cd07630		198	BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain	89.88
cd07659		215	BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of	86.7
cd07629		187	BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of	86.56
KOG3725		375	consensus SH3 domain protein SH3GLB [Signal transd	85.5
cd07608		192	BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) dom	85.49
cd07645		226	I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as	84.71
cd07625		230	BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of	84.33
cd07664		234	BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S	83.43
cd07622		201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	83.13
cd07663		218	BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S	82.93
cd00011		203	BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do	81.72
cd07662		218	BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S	80.16

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2	Back alignment and domain information

Probab=100.00  E-value=3.5e-45  Score=353.50  Aligned_cols=156  Identities=24%  Similarity=0.365  Sum_probs=144.5

Q ss_pred             CCc-cccccccCCCchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHH-HHHHHHHHHHHHHHHH
Q 008054            1 MGS-CLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYV   77 (579)
Q Consensus         1 MGs-CLlEk~alndd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~ve-emKkqcDekr~~YE~m   77 (579)
                      ||+ ||     .+||+++|++|+|||++++||++|+++|++||+|||++|++|||| |||+|+ |||||||++|++||+|
T Consensus        49 LG~~~l-----~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~  123 (215)
T cd07642          49 FGSNCV-----CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETK  123 (215)
T ss_pred             Hhhccc-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            577 88     468999999999999999999999999999999999999999999 999997 9999999999999999


Q ss_pred             HHHHHhhccccCCCCCcchhH--------HHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhh
Q 008054           78 MAQQREKGKSKSGKGESVSLQ--------QQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGF  149 (579)
Q Consensus        78 ~a~~~EKgrsk~~K~e~~i~~--------~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGL  149 (579)
                      + .++||+++|++|++++|++        ++|+.++.+|+.++..|+|+|++||+||+++|||++++|||||++||++||
T Consensus       124 ~-~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~  202 (215)
T cd07642         124 V-TKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGL  202 (215)
T ss_pred             H-HHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9 5999999999999999842        166777777777777777888899999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHH
Q 008054          150 KSLEAVDTHVRLV  162 (579)
Q Consensus       150 KsLE~lephVk~~  162 (579)
                      ++||+|+|||++|
T Consensus       203 k~le~l~p~~~~l  215 (215)
T cd07642         203 KAVETLKPSIEKL  215 (215)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999999875

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3	Back alignment and domain information

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins	Back alignment and domain information

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1	Back alignment and domain information

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins	Back alignment and domain information

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like	Back alignment and domain information

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1	Back alignment and domain information

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)	Back alignment and domain information

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins	Back alignment and domain information

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature	Back alignment and domain information

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]	Back alignment and domain information

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Back alignment and domain information

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3	Back alignment and domain information

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2	Back alignment and domain information

>smart00721 BAR BAR domain	Back alignment and domain information

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2	Back alignment and domain information

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1	Back alignment and domain information

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins	Back alignment and domain information

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins	Back alignment and domain information

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2	Back alignment and domain information

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A	Back alignment and domain information

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B	Back alignment and domain information

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins	Back alignment and domain information

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase	Back alignment and domain information

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins	Back alignment and domain information

>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1	Back alignment and domain information

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1	Back alignment and domain information

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1	Back alignment and domain information

>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2	Back alignment and domain information

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3	Back alignment and domain information

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2	Back alignment and domain information

>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1	Back alignment and domain information

>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1	Back alignment and domain information

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2	Back alignment and domain information

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3	Back alignment and domain information

>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Back alignment and domain information

>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family	Back alignment and domain information

>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins	Back alignment and domain information

>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins	Back alignment and domain information

>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3	Back alignment and domain information

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking	Back alignment and domain information

>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins	Back alignment and domain information

>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p	Back alignment and domain information

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30	Back alignment and domain information

>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein	Back alignment and domain information

>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II	Back alignment and domain information

>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis	Back alignment and domain information

>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins	Back alignment and domain information

>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p	Back alignment and domain information

>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2	Back alignment and domain information

>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2	Back alignment and domain information

>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B	Back alignment and domain information

>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6	Back alignment and domain information

>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules	Back alignment and domain information

>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92)	Back alignment and domain information

>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin	Back alignment and domain information

>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins	Back alignment and domain information

>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1	Back alignment and domain information

>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p	Back alignment and domain information

>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]	Back alignment and domain information

>cd07608 BAR_ArfGAP_fungi The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized fungal Arf GAP proteins	Back alignment and domain information

>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1	Back alignment and domain information

>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p	Back alignment and domain information

>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2	Back alignment and domain information

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4	Back alignment and domain information

>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5	Back alignment and domain information

>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes	Back alignment and domain information

>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		579
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2q12_A		265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	1e-09
2z0v_A		240	SH3-containing GRB2-like protein 3; helix bundle,	4e-07
2fic_A		251	Bridging integrator 1; BAR domain, homodimer, coil	7e-05
1uru_A		244	Amphiphysin; endocytosis, coiled-coil, membrane cu	1e-04
1zww_A		256	SH3-containing GRB2-like protein 2; coiled coil, t	2e-04
4avm_A		237	Bridging integrator 2; protein binding, plasma mem	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 64/469 (13%), Positives = 137/469 (29%), Gaps = 134/469 (28%)

Query: 8   KTSLD--DDEESRKVLLMLGEVQFELQ---KLVDNYRSNIFLTITNPSESLLNELRTVED 62
             + D  D ++  K +L   E+   +     +    R  +F T+ +  E ++ +   VE+
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKF--VEE 85

Query: 63  MKRQCDEKRNVCEYVMAQQREKGKSKSGKGES-VSLQQQLQAANDEYEEEARLCVFR--- 118
           + R      N  +++M+  + + +  S      +  + +L   N  +   A+  V R   
Sbjct: 86  VLRI-----NY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQP 136

Query: 119 -------LKSLKQGQY----------RSLLT-QAARHHAAQLNFFRKGF-KSLEAVDTHV 159
                  L  L+  +           ++ +       +  Q     K F  +L+  ++  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 160 RLVAERQHIDYQFSGLEDNDGEDGEDSYYAN---EAGELS--FDYRDNKQGL----DVVS 210
            ++   Q + YQ          D   +          EL      +  +  L    +V +
Sbjct: 197 TVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 211 ---------------TSRKSMEVDDVDVSFPQASTVENAEVNLDKNPG-EYQAS------ 248
                          T+R     D +  +     ++++  + L  +              
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 249 ----HRERRGSSFSAPIFPERKIDPAERI---RQV---QQSSARQPSTYVLPT------- 291
                     +     I  E   D        + V   + ++  + S  VL         
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 292 ------PIDAKVPI-----------------------SSSVAPRTRPSNPSGRTYNLSHS 322
                 P  A +P                          S+  +     P   T ++  S
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTISI-PS 430

Query: 323 SPLEQKKEDRDYGDAH--LSEHSGLKSQSLLKESDSNNASTRPPPLRDG 369
             LE K +  +    H  + +H      ++ K  DS++    PP L D 
Sbjct: 431 IYLELKVKLENEYALHRSIVDH-----YNIPKTFDSDDLI--PPYL-DQ 471

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Length = 265	Back alignment and structure

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240	Back alignment and structure

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Length = 251	Back alignment and structure

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244	Back alignment and structure

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A Length = 256	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		579
2q12_A		265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	99.66
2q13_A		385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.58
4h8s_A		407	DCC-interacting protein 13-beta; BAR domain, pleck	99.48
2z0v_A		240	SH3-containing GRB2-like protein 3; helix bundle,	99.24
1zww_A		256	SH3-containing GRB2-like protein 2; coiled coil, t	99.15
1uru_A		244	Amphiphysin; endocytosis, coiled-coil, membrane cu	98.53
2fic_A		251	Bridging integrator 1; BAR domain, homodimer, coil	98.42
4avm_A		237	Bridging integrator 2; protein binding, plasma mem	97.64
4a3a_A		243	Amphiphysin; structural genomics, invagination, kn	96.78
2ykt_A		253	Brain-specific angiogenesis inhibitor 1-associate	96.21
2d1l_A		253	Metastasis suppressor protein 1; IRSP53, actin bin	94.82
1i4d_A		224	Arfaptin 2, partner of RAC1; coiled coil, G-protei	94.3
3dyt_A		366	Sorting nexin-9; 3-helix bundle, BAR domain, PX do	93.81
4akv_A		386	Sorting nexin-33; transport protein, organelle bio	93.42
3plt_A		234	Sphingolipid long chain base-responsive protein L;	92.66
3ok8_A		222	Brain-specific angiogenesis inhibitor 1-associate	88.02
2efl_A		305	Formin-binding protein 1; EFC domain, structural g	83.47
3abh_A		312	Pacsin2, protein kinase C and casein kinase substr	81.49
2v0o_A		276	FCHO2, FCH domain only protein 2; lipid-binding pr	81.35

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A	Back alignment and structure

Probab=99.66  E-value=1.3e-15  Score=145.32  Aligned_cols=148  Identities=15%  Similarity=0.191  Sum_probs=124.2

Q ss_pred             CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054           13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK   91 (579)
Q Consensus        13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K   91 (579)
                      +|+.++.+|..||++..||......+..++.++|..|++.+++ ||+.++|.||.||+.|++|+..++.+..-.|+|  +
T Consensus        78 ~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~  155 (265)
T 2q12_A           78 DDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--E  155 (265)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--C
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--c
Confidence            7888999999999999999999999999999999999999999 999999999999999999998886544444433  2


Q ss_pred             CCcchhHHHHHHHHHHHHHHH-----HHHHHHhh--hhccccchhHHHHHHHHHHHHHhhHHHhhhhh-hhhhHHHHHHh
Q 008054           92 GESVSLQQQLQAANDEYEEEA-----RLCVFRLK--SLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA  163 (579)
Q Consensus        92 ~e~~i~~~ql~~a~eE~eeEa-----~lc~frLK--sLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL-E~lephVk~~a  163 (579)
                      .|    . +++++..++++.+     ++|.|-++  .|+.++..++|..+..|.+||.+||+.|...+ +.++|+++.|.
T Consensus       156 ~e----~-~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~  230 (265)
T 2q12_A          156 ND----K-VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG  230 (265)
T ss_dssp             CH----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ch----h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    1 3445555555555     56777776  89999999999999999999999999999998 49999999988


Q ss_pred             hhhc
Q 008054          164 ERQH  167 (579)
Q Consensus       164 e~~h  167 (579)
                      ...+
T Consensus       231 ~~l~  234 (265)
T 2q12_A          231 TSVQ  234 (265)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

PyMOL of 2q12

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A	Back alignment and structure

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}	Back alignment and structure

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}	Back alignment and structure

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A	Back alignment and structure

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1	Back alignment and structure

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A	Back alignment and structure

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}	Back alignment and structure

>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A	Back alignment and structure

>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}	Back alignment and structure

>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*	Back alignment and structure

>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*	Back alignment and structure

>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}	Back alignment and structure

>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}	Back alignment and structure

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4	Back alignment and structure

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A	Back alignment and structure

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		579
d1i4da_		200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	6e-16
d2d4ca1		237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	1e-13
d1urua_		217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	1e-12
d2elba1		268	a.238.1.1 (A:6-273) DCC-interacting protein 13-alp	1e-11

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200	Back information, alignment and structure


class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 6e-16
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 5/156 (3%)

Query: 1   MGSCLMEKTSLDDDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTV 60
           +G    + +      E ++      E Q  L K  +     +   +++ +  +   +   
Sbjct: 46  LGDAFADLS--QKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDT 103

Query: 61  EDMKRQCDEKRNVCEYV---MAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVF 117
               +Q +  R   +     + +     +    +G   S Q   QA  D+YE+       
Sbjct: 104 LMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAI 163

Query: 118 RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE 153
           +LK L++ + + +  Q    H A   +F    K LE
Sbjct: 164 KLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199

PyMOL of d1i4da_

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237	Back information, alignment and structure

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217	Back information, alignment and structure

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 268	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		579
d2elba1		268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.67
d2d4ca1		237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1i4da_		200	Arfaptin, Rac-binding fragment {Human (Homo sapien	99.41
d1urua_		217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	99.32
d1y2oa1		248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	99.23
d2efla1		288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	92.67
d2efka1		279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	89.48
d2d4ca1		237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	80.45

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=145.78  Aligned_cols=151  Identities=16%  Similarity=0.214  Sum_probs=124.3

Q ss_pred             CchHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhccCCcHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q 008054           13 DDEESRKVLLMLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGK   91 (579)
Q Consensus        13 dd~e~g~vll~lgk~q~EL~kL~d~yr~nI~~tIt~PsESLLk-eLk~veemKkqcDekr~~YE~m~a~~~EKgrsk~~K   91 (579)
                      ||+.+|.+|..||.+..||....+.+..++..+|..|++++++ +++.++++||.||+.+++|+..++.+....|.|.  
T Consensus        73 dd~~~~~~l~~f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~~~~~k~k~--  150 (268)
T d2elba1          73 DDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRE--  150 (268)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC----
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--
Confidence            7888999999999999999999999999999999999999998 9999999999999999999999865543333221  


Q ss_pred             CCcch--hHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhhHHHhhhhh-hhhhHHHHHHhhh
Q 008054           92 GESVS--LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVAER  165 (579)
Q Consensus        92 ~e~~i--~~~ql~~a~eE~eeEa~lc~frLKsLKqgq~rsLLtqaaRhhaAQl~fFrkGLKsL-E~lephVk~~ae~  165 (579)
                      .+..+  ..++|.+++..|+..+-=+++.|..|..++...+|..++.+++||++||++|+..| +.++++++.|.+.
T Consensus       151 ~~~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l~~~  227 (268)
T d2elba1         151 NDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTS  227 (268)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111  12266677777777665555667799999999999999999999999999999987 7899999888754

PyMOL of d2elba1

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure