Citrus Sinensis ID: 008056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEEccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccEEEEEEHHHHcHHHHHHHHHHHcccHHHHHHccc
ccEEEEcccccccccccccccEccccccEcccEEEccccccccEEEEEEcccccccccccccccHHHHHcccEEEEccHHHcccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHcccccccccEEEccccccccEEcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
meatllsshhftpqlftttpvklggghvladnrfchplctkTFVSVRLSLLdskrrqvpllnrpflsrankrysvyssdqlrsDYVNVEASSALsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIgyfiplpgfdrrlipqdylsFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDtisesgfgqgsSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFklasaaredspitevepyipfninpsgmqpvlttTYLLAFPSILASILGSPFWQHVKEIlnpetsvgarpwvYYTIYAFFVFLFNIFDIANLPKEIADYLNKMgaripnvkpgkaTIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
meatllsshhftpqlfTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLslldskrrqvpllnrpflsrankrysvyssdqlrSDYVNVEASSAlsvnleavpprlddevdsqglrdvtdnetfrskpkmykNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLasaaredspitEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRsyqaynvmpslskalrrygv
MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGlllsilatsstilDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
*********HFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYS******DYVNV****************************************MYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMP***********
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRL****************FLSRANKRYSV**************************************************************IRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKL**********TEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY**
********HHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
*EATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPP***************DNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYG*
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MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query579 2.2.26 [Sep-21-2011]
F4IQV7575 Preprotein translocase su yes no 0.932 0.939 0.735 0.0
P0A4H1439 Protein translocase subun yes no 0.694 0.915 0.317 5e-45
P0A4H0439 Protein translocase subun yes no 0.694 0.915 0.317 5e-45
O66491429 Protein translocase subun yes no 0.694 0.937 0.314 2e-43
Q1XDJ1411 Protein translocase subun N/A no 0.659 0.929 0.295 1e-41
P51297411 Protein translocase subun N/A no 0.659 0.929 0.292 1e-39
Q05217430 Protein translocase subun yes no 0.692 0.932 0.285 7e-38
Q8CNF3430 Protein translocase subun yes no 0.685 0.923 0.291 1e-37
Q5HM19430 Protein translocase subun yes no 0.685 0.923 0.291 1e-37
Q7A086430 Protein translocase subun yes no 0.682 0.918 0.293 9e-37
>sp|F4IQV7|SCY2_ARATH Preprotein translocase subunit SCY2, chloroplastic OS=Arabidopsis thaliana GN=SCY2 PE=2 SV=1 Back     alignment and function desciption
 Score =  827 bits (2137), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/545 (73%), Positives = 470/545 (86%), Gaps = 5/545 (0%)

Query: 38  LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
           LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct: 33  LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query: 95  SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
           ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct: 93  ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query: 155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
           EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct: 151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query: 215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
           LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct: 211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query: 275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
           L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct: 271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query: 335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDS 394
           L+KML+Q+ GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLASA+RE S
Sbjct: 331 LHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLASASREGS 390

Query: 395 PITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 454
           PITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE++VGA P
Sbjct: 391 PITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPESTVGAPP 450

Query: 455 WVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFW 514
           WVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN+KPGKATIEYLTKIQASTRFW
Sbjct: 451 WVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQASTRFW 510

Query: 515 GGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 574
           GGLLLS LAT+ST+LDHYLR IN+GFSIGFTSVLIIVGSIIELRRSY AYNVMPSLSKAL
Sbjct: 511 GGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMPSLSKAL 570

Query: 575 RRYGV 579
           +RYGV
Sbjct: 571 KRYGV 575
Involved in protein export. Probably interacts with other proteins to allow the postimport or conservative sorting pathway for inner membrane proteins in plastids. Central subunit of the protein translocation channel SecYE. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug.
Arabidopsis thaliana (taxid: 3702)
>sp|P0A4H1|SECY_SYNP6 Protein translocase subunit SecY OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P0A4H0|SECY_SYNE7 Protein translocase subunit SecY OS=Synechococcus elongatus (strain PCC 7942) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|O66491|SECY_AQUAE Protein translocase subunit SecY OS=Aquifex aeolicus (strain VF5) GN=secY PE=1 SV=1 Back     alignment and function description
>sp|Q1XDJ1|SECY_PORYE Protein translocase subunit SecY OS=Porphyra yezoensis GN=secY PE=3 SV=1 Back     alignment and function description
>sp|P51297|SECY_PORPU Protein translocase subunit SecY OS=Porphyra purpurea GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q05217|SECY_STACT Protein translocase subunit SecY OS=Staphylococcus carnosus (strain TM300) GN=secY PE=3 SV=2 Back     alignment and function description
>sp|Q8CNF3|SECY_STAES Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 12228) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q5HM19|SECY_STAEQ Protein translocase subunit SecY OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=secY PE=3 SV=1 Back     alignment and function description
>sp|Q7A086|SECY_STAAW Protein translocase subunit SecY OS=Staphylococcus aureus (strain MW2) GN=secY PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
296086738613 unnamed protein product [Vitis vinifera] 1.0 0.944 0.792 0.0
225437006668 PREDICTED: preprotein translocase subuni 0.977 0.847 0.787 0.0
147784859 1622 hypothetical protein VITISV_011897 [Viti 0.944 0.337 0.796 0.0
224066513552 SecY protein [Populus trichocarpa] gi|22 0.953 1.0 0.754 0.0
255559472538 protein translocase secy subunit, putati 0.844 0.908 0.815 0.0
449444663494 PREDICTED: preprotein translocase subuni 0.853 1.0 0.807 0.0
240254559575 secY protein transport-like protein [Ara 0.932 0.939 0.735 0.0
356503539546 PREDICTED: preprotein translocase subuni 0.936 0.992 0.708 0.0
297822899567 hypothetical protein ARALYDRAFT_320901 [ 0.924 0.943 0.694 0.0
4582448556 putative preprotein translocase SECY pro 0.943 0.982 0.698 0.0
>gi|296086738|emb|CBI32373.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/579 (79%), Positives = 506/579 (87%)

Query: 1   MEATLLSSHHFTPQLFTTTPVKLGGGHVLADNRFCHPLCTKTFVSVRLSLLDSKRRQVPL 60
           MEATLLSSHHF P+ F+  P K  GG V    + C P   +T VS++L   +S  R+  L
Sbjct: 35  MEATLLSSHHFNPRFFSPKPFKFPGGQVEHGLQLCCPFYARTNVSLKLISSESSARRFSL 94

Query: 61  LNRPFLSRANKRYSVYSSDQLRSDYVNVEASSALSVNLEAVPPRLDDEVDSQGLRDVTDN 120
           L+RPFLSRANK+  V  S+QLRSDY+N EA+   SVN E  P R DD  D  G  +V ++
Sbjct: 95  LSRPFLSRANKKLCVNFSEQLRSDYLNAEATPLQSVNDELFPQRHDDGSDVFGPHNVNNS 154

Query: 121 ETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPG 180
           ET + + KM++NRFLNF RL SVLNNAAESFFKSEIRRRLFVTAVL+VISR+GYFIPLPG
Sbjct: 155 ETLQPRTKMFRNRFLNFARLGSVLNNAAESFFKSEIRRRLFVTAVLLVISRVGYFIPLPG 214

Query: 181 FDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQL 240
           FDRRL+P+DYLSFVSGSVDELGDF  ELKLS FQLGISPQI ASILMQVLCH+VPSLV+L
Sbjct: 215 FDRRLMPEDYLSFVSGSVDELGDFAGELKLSLFQLGISPQIAASILMQVLCHVVPSLVKL 274

Query: 241 RKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGA 300
           RKEGLDGHEKIKSYIWWISLGFAILEA+++ACYSL YS+YAASH VKHVMVT   LVCGA
Sbjct: 275 RKEGLDGHEKIKSYIWWISLGFAILEALVLACYSLTYSVYAASHRVKHVMVTTLFLVCGA 334

Query: 301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVF 360
           MTM+WICD ISESGFGQGSSLIICVGILTGYT+TLYKML QL G +V WWP++L +LGVF
Sbjct: 335 MTMTWICDKISESGFGQGSSLIICVGILTGYTDTLYKMLVQLSGGAVSWWPYILAVLGVF 394

Query: 361 TIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTY 420
           TIVTMWAVVVTEGCRK+KLQYYGFKLASA R+DSPITEVEPYIPFNINPSGMQPVLTT Y
Sbjct: 395 TIVTMWAVVVTEGCRKIKLQYYGFKLASATRDDSPITEVEPYIPFNINPSGMQPVLTTAY 454

Query: 421 LLAFPSILASILGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIANLPKEI 480
           LLAFPSILAS+L SPFW+H+KEILNPETS+GA PWVYY+IYAFFVF+FNIFDIAN+PKEI
Sbjct: 455 LLAFPSILASLLRSPFWEHIKEILNPETSIGAEPWVYYSIYAFFVFVFNIFDIANMPKEI 514

Query: 481 ADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGF 540
           ADYLNKMGARIPN+KPGKATI YLTKIQASTRFWGGLLLS LAT STILDHYLRRIN+GF
Sbjct: 515 ADYLNKMGARIPNIKPGKATIAYLTKIQASTRFWGGLLLSFLATMSTILDHYLRRINQGF 574

Query: 541 SIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRYGV 579
           SIGFTSVLIIVGSIIELRRSYQAYNVMP LSKALRRYGV
Sbjct: 575 SIGFTSVLIIVGSIIELRRSYQAYNVMPDLSKALRRYGV 613

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437006|ref|XP_002272499.1| PREDICTED: preprotein translocase subunit secY-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784859|emb|CAN77495.1| hypothetical protein VITISV_011897 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224066513|ref|XP_002302117.1| SecY protein [Populus trichocarpa] gi|222843843|gb|EEE81390.1| SecY protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255559472|ref|XP_002520756.1| protein translocase secy subunit, putative [Ricinus communis] gi|223540141|gb|EEF41718.1| protein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444663|ref|XP_004140093.1| PREDICTED: preprotein translocase subunit SCY2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|240254559|ref|NP_180711.4| secY protein transport-like protein [Arabidopsis thaliana] gi|363805540|sp|F4IQV7.1|SCY2_ARATH RecName: Full=Preprotein translocase subunit SCY2, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2289; Flags: Precursor gi|330253463|gb|AEC08557.1| secY protein transport-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503539|ref|XP_003520565.1| PREDICTED: preprotein translocase subunit secY-like [Glycine max] Back     alignment and taxonomy information
>gi|297822899|ref|XP_002879332.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] gi|297325171|gb|EFH55591.1| hypothetical protein ARALYDRAFT_320901 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4582448|gb|AAD24832.1| putative preprotein translocase SECY protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query579
TAIR|locus:2065868575 SCY2 "SECY HOMOLOG 2" [Arabido 0.932 0.939 0.717 2.4e-209
UNIPROTKB|P0AGA2443 secY [Escherichia coli K-12 (t 0.702 0.918 0.288 8e-37
TIGR_CMR|CPS_0621445 CPS_0621 "preprotein transloca 0.699 0.910 0.276 8.9e-36
TIGR_CMR|SO_0251446 SO_0251 "preprotein translocas 0.704 0.914 0.273 3.5e-35
UNIPROTKB|P78283444 secY "Protein translocase subu 0.708 0.923 0.263 1e-34
TIGR_CMR|VC_2576444 VC_2576 "preprotein translocas 0.708 0.923 0.263 1e-34
TIGR_CMR|CBU_0258442 CBU_0258 "preprotein transloca 0.715 0.936 0.258 2.3e-34
TIGR_CMR|CHY_2289419 CHY_2289 "preprotein transloca 0.694 0.959 0.265 3.3e-33
TIGR_CMR|DET_0494438 DET_0494 "preprotein transloca 0.704 0.931 0.271 9.4e-33
TIGR_CMR|SPO_0506455 SPO_0506 "preprotein transloca 0.687 0.874 0.261 1.6e-32
TAIR|locus:2065868 SCY2 "SECY HOMOLOG 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2024 (717.5 bits), Expect = 2.4e-209, P = 2.4e-209
 Identities = 391/545 (71%), Positives = 458/545 (84%)

Query:    38 LCTKTFVSVRLSLLDSKRRQ---VPLLNRPFLSRANKRYSVYSSDQLRSDYVNVEASSAL 94
             LC++    +  +L  S+ RQ   + +  R  L +  K +S+  SD+ R D ++ E     
Sbjct:    33 LCSQPRKCLTTNLNMSRTRQGHSIQMNRRHLLMKERKSFSINYSDKFRDDSMSSEEMHTD 92

Query:    95 SVNLEAVPPRLDDEVDSQGLRDVTDNETFRSKPKMYKNRFLNFIRLSSVLNNAAESFFKS 154
             ++++E +PP   D  +SQ       N     +PK ++NRFL+F+R+SSVLN AAE FFKS
Sbjct:    93 ALDVEIIPPDSQDIRNSQN--SAVSNTLQDDRPKSFRNRFLDFVRISSVLNTAAERFFKS 150

Query:   155 EIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQ 214
             EIRRRLFVTAVL+V+SR+GYFIPLPGFDRRLIPQDYLSFVSGSV+ELG+FGAE+KLS FQ
Sbjct:   151 EIRRRLFVTAVLLVLSRVGYFIPLPGFDRRLIPQDYLSFVSGSVEELGEFGAEIKLSLFQ 210

Query:   215 LGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYS 274
             LG+SPQI+ASI+MQVLCH++PSLV+LRKEGLDGHEKIKSYIWW+S  FAI+EA++VA  S
Sbjct:   211 LGLSPQIIASIIMQVLCHVLPSLVKLRKEGLDGHEKIKSYIWWLSFFFAIVEALVVAYTS 270

Query:   275 LPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGYTET 334
             L YS++AA+  VKHVM+T+ LLVCGAMTM+W+CDTISESGFG GSSLIICVGILTGYTET
Sbjct:   271 LQYSVFAATAQVKHVMMTSSLLVCGAMTMTWLCDTISESGFGHGSSLIICVGILTGYTET 330

Query:   335 LYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASAAREDS 394
             L+KML+Q+ GS   W P++LGLLG+FT+VTM+AVVVTEGCRK+KLQYYGFKLASA+RE S
Sbjct:   331 LHKMLNQISGSFSNWLPYLLGLLGIFTVVTMFAVVVTEGCRKIKLQYYGFKLASASREGS 390

Query:   395 PITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILNPETSVGARP 454
             PITEVEPYIPFNINP+GMQPVLTTTYLLAFPSILASILGSPF  ++KEILNPE++VGA P
Sbjct:   391 PITEVEPYIPFNINPAGMQPVLTTTYLLAFPSILASILGSPFLLNMKEILNPESTVGAPP 450

Query:   455 WVYYTIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFW 514
             WVYY+IYAFFVFLFNIFDIANLPKEIADYLNKMGARIPN+KPGKATIEYLTKIQASTRFW
Sbjct:   451 WVYYSIYAFFVFLFNIFDIANLPKEIADYLNKMGARIPNIKPGKATIEYLTKIQASTRFW 510

Query:   515 GGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKAL 574
             GG             DHYLR IN+GFSIGFTSVLIIVGSIIELRRSY AYNVMPSLSKAL
Sbjct:   511 GGLLLSFLATASTVLDHYLRSINQGFSIGFTSVLIIVGSIIELRRSYHAYNVMPSLSKAL 570

Query:   575 RRYGV 579
             +RYGV
Sbjct:   571 KRYGV 575
GO:0005886 "plasma membrane" evidence=ISM
GO:0009306 "protein secretion" evidence=ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0009526 "plastid envelope" evidence=IDA
GO:0006354 "DNA-dependent transcription, elongation" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
UNIPROTKB|P0AGA2 secY [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0621 CPS_0621 "preprotein translocase, SecY subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0251 SO_0251 "preprotein translocase, SecY subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P78283 secY "Protein translocase subunit SecY" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2576 VC_2576 "preprotein translocase, SecY subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0258 CBU_0258 "preprotein translocase, SecY subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2289 CHY_2289 "preprotein translocase, SecY subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0494 DET_0494 "preprotein translocase, SecY subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0506 SPO_0506 "preprotein translocase, SecY subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
F4IQV7SCY2_ARATHNo assigned EC number0.73570.93260.9391yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
pfam00344340 pfam00344, SecY, SecY translocase 9e-75
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 3e-72
COG0201436 COG0201, SecY, Preprotein translocase subunit SecY 7e-64
CHL00161417 CHL00161, secY, preprotein translocase subunit Sec 8e-64
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 1e-56
PRK12907434 PRK12907, secY, preprotein translocase subunit Sec 4e-31
PRK12417404 PRK12417, secY, preprotein translocase subunit Sec 3e-25
TIGR02920395 TIGR02920, acc_sec_Y2, accessory Sec system transl 4e-21
PRK08568462 PRK08568, PRK08568, preprotein translocase subunit 0.003
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information 
 Score =  241 bits (617), Expect = 9e-75
 Identities = 103/356 (28%), Positives = 170/356 (47%), Gaps = 23/356 (6%)

Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIV 270
           S F LGI P I ASI+MQ+L  + P L +L KEG +G +KI+ Y  +++L  A+++A+ +
Sbjct: 1   SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60

Query: 271 ACYSLPYSIYAASHSVK----HVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVG 326
                 Y  ++    +     ++++    L  G M + W+ + I++ G G G SLII  G
Sbjct: 61  VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAG 120

Query: 327 ILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYGFK 385
           I+      +  + S L  +        L LL + T+  +  VV + E  R++ +QY    
Sbjct: 121 IVASIPWAIINLFSLLSSAGGLLSILYLLLLLLATLAVILLVVYLQEARRRIPIQYAKRV 180

Query: 386 LASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEILN 445
           +     + S       Y+P  +N +G+ P++  + LLA P  +A  LGS F       L 
Sbjct: 181 VGGGRGQSS-------YLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLA 233

Query: 446 PETSVGARPWVYYTIYAFFVFLFNIF--DIANLPKEIADYLNKMGARIPNVKPGKATIEY 503
               +G+   VY   Y   +  F+ F   I   PK+IA+ L K G  IP ++PGK+T +Y
Sbjct: 234 YYLPIGS--PVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKY 291

Query: 504 LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRR 559
           L ++     F G + L ++A    +L             G TS+LI VG  ++   
Sbjct: 292 LNRVIPRLTFIGAIFLGLIAVLPDLLGAL-------GGFGGTSLLIAVGVALDTYE 340

Length = 340
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|214379 CHL00161, secY, preprotein translocase subunit SecY; Validated Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|131966 TIGR02920, acc_sec_Y2, accessory Sec system translocase SecY2 Back     alignment and domain information
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 579
COG0201436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK12907434 secY preprotein translocase subunit SecY; Reviewed 100.0
PRK09204426 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12417404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK08568462 preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PTZ00219474 Sec61 alpha subunit; Provisional 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
KOG1373476 consensus Transport protein Sec61, alpha subunit [ 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 89.2
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-91  Score=745.11  Aligned_cols=417  Identities=29%  Similarity=0.448  Sum_probs=346.5

Q ss_pred             hhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccchhhcCchhH
Q 008056          142 SVLNNAAESF-FKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQ  220 (579)
Q Consensus       142 ~~~~~~~~~~-~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLFsLGI~Py  220 (579)
                      ...|++.++. +.++++||++||++++++||+|++||+||+|.++..+.+.+...+.++.+..-||++++|+|+|||+||
T Consensus         4 ~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~Py   83 (436)
T COG0201           4 PLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIMPY   83 (436)
T ss_pred             hhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccHHH
Confidence            3457778876 469999999999999999999999999999998764433222111111111125679999999999999


Q ss_pred             HHHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccchhHHHHHHHHHHH
Q 008056          221 IVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYS--IYAASHSVKHVMVTAFLLVC  298 (579)
Q Consensus       221 ItASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~--~~~~~~~~~~~l~ivl~Lva  298 (579)
                      ||||||||||+...|.++|++||+|+||+|+|++|||+|+++|++||++++......+  ......+..++++++++|++
T Consensus        84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~  163 (436)
T COG0201          84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTA  163 (436)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHHHH
Confidence            9999999999977999999999999999999999999999999999999975432111  11112235568899999999


Q ss_pred             HHHHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCC--cccHHHHHHHHHHHHHHHHHHHhhccceEE
Q 008056          299 GAMTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSS--VRWWPFMLGLLGVFTIVTMWAVVVTEGCRK  376 (579)
Q Consensus       299 Ga~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~--~~~~~~ll~il~i~llvi~~iV~v~~~~rr  376 (579)
                      |+|++|||||+|||||+|||+||+|++||++++|+.+.+.......+.  .++.. .+..++.+++++++++|+|+++||
T Consensus       164 Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~l~ii~~vvyve~~~r~  242 (436)
T COG0201         164 GTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILF-LLLLVLLTLAIIFLVVYVEQARRR  242 (436)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHhHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHHHHHHHhhheEEE
Confidence            999999999999999999999999999999999999988665444331  12221 122344455567779999999999


Q ss_pred             EEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCCh-------hHHHHHHHcCCCCC
Q 008056          377 VKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSP-------FWQHVKEILNPETS  449 (579)
Q Consensus       377 IPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~~-------~~~~i~~~l~~~~s  449 (579)
                      |||||+|++         ..+++++|+|+|+||||+||+||||+++++|++++++++++       |...+..++++.  
T Consensus       243 IPI~y~~~~---------~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~--  311 (436)
T COG0201         243 IPIQYAKRQ---------SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPG--  311 (436)
T ss_pred             eehhhhhhh---------hcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhcCCCccccccchhhHHHhccCC--
Confidence            999999854         13367899999999999999999999999999999998622       334555666644  


Q ss_pred             CCCcchHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHH
Q 008056          450 VGARPWVYYTIYAFFVFLFNIFD--IANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSST  527 (579)
Q Consensus       450 ~~~~~~iy~iiy~~~ii~Fs~f~--i~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~  527 (579)
                          .|+|.++|++++++|||||  ++.||||+||||||+|.+|||+|||++|+|||+|+++|+|++||+|++++|++|+
T Consensus       312 ----~~~y~~~y~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~  387 (436)
T COG0201         312 ----SPVYIALYVVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPE  387 (436)
T ss_pred             ----cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                4899999999999999999  4568999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008056          528 ILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY  577 (579)
Q Consensus       528 il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~  577 (579)
                      +++...+   ..+.+||||+||+||+++|+++|+++++.+++|+++.+..
T Consensus       388 l~~~~~~---~~~~~gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~~~  434 (436)
T COG0201         388 LLGTAGG---VPFYFGGTSLLIVVGVALDTYEQIEAELLMEKYPGLRRIK  434 (436)
T ss_pred             HHHHhcC---CcccccCeeeeeehHHHHHHHHHHHHHHHHhhchhHHhhc
Confidence            9998642   3478899999999999999999999999999999985543

>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
3dl8_G429 Structure Of The Complex Of Aquifex Aeolicus Secyeg 5e-41
3din_C431 Crystal Structure Of The Protein-Translocation Comp 2e-31
2zjs_Y434 Crystal Structure Of Secye Translocon From Thermus 2e-29
3j01_A435 Structure Of The Ribosome-Secye Complex In The Memb 8e-24
2akh_Y400 Normal Mode-Based Flexible Fitted Coordinates Of A 6e-17
>pdb|3DL8|G Chain G, Structure Of The Complex Of Aquifex Aeolicus Secyeg And Bacillus Subtilis Seca Length = 429 Back     alignment and structure 
Iteration: 1

 Score =  165 bits (418), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/439 (30%), Positives = 218/439 (49%), Gaps = 37/439 (8%)
Query: 154 SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF--GAEL-KL 210
            E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D   G  L +L
Sbjct: 12  KELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDIFSGGNLGRL 70
Query: 211 SFFQLGISPQIVASILMQVLCHIVPSLVQLRKEGLD-GHEKIKSYIWWISLGFAILEAVI 269
           + F LG+ P I ASI+MQ+L   +PSL +L KE  D G  KI  Y  +++L  A ++++ 
Sbjct: 71  TVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLG 130
Query: 270 VACY----SLPYSIYAASH-SVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIIC 324
           +A +      P  I    +  +  +++T   LV G M + WI D I+E G G G+SLII 
Sbjct: 131 IAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGIGNGASLIIF 190
Query: 325 VGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVV-VTEGCRKVKLQYYG 383
            GI+  +   + +   ++    +   P  L L+    I  +  +V V E  R++ +QY G
Sbjct: 191 AGIVANFPNAVIQFYEKVKTGDI--GPLTLLLIIALIIAIIVGIVYVQEAERRIPIQYPG 248
Query: 384 FKLAS---AAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHV 440
            ++     A R+         Y+P  INP+G+ P++    LL  PS L + + +PF + +
Sbjct: 249 RQVGRQLYAGRKT--------YLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPFIKVI 300
Query: 441 KEILNPETSVGARPWVYYT-IYAFFVFLFNIFDIANL--PKEIADYLNKMGARIPNVKPG 497
            ++  P    GA   ++Y  +Y  F+  F  F  A L  P E+A+ L+K GA IP V+PG
Sbjct: 301 ADMFQP----GA---IFYNFLYVTFIVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPG 353
Query: 498 KATIEYLTKIQASTRFWGGXXXXXXXXXXXXXDHYLRRINEGFSIGFTSVLIIVGSIIEL 557
           + T++YL +I     F+G                +    N  F  G T+ LI+VG  ++ 
Sbjct: 354 QDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTALIVVGVALDT 410
Query: 558 RRSYQAYNVMPSLSKALRR 576
            R  + Y +       +RR
Sbjct: 411 FRQIETYLIQKKYKSYVRR 429
>pdb|3DIN|C Chain C, Crystal Structure Of The Protein-Translocation Complex Formed By The Secy Channel And The Seca Atpase Length = 431 Back     alignment and structure
>pdb|2ZJS|Y Chain Y, Crystal Structure Of Secye Translocon From Thermus Thermophilus With A Fab Fragment Length = 434 Back     alignment and structure
>pdb|3J01|A Chain A, Structure Of The Ribosome-Secye Complex In The Membrane Environment Length = 435 Back     alignment and structure
>pdb|2AKH|Y Chain Y, Normal Mode-Based Flexible Fitted Coordinates Of A Non- Translocating Secyeg Protein-Conducting Channel Into The Cryo-Em Map Of A Secyeg-Nascent Chain-70s Ribosome Complex From E. Coli Length = 400 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query579
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 7e-68
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 3e-67
3din_C431 Preprotein translocase subunit SECY; protein trans 8e-66
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 2e-65
1rh5_A436 Preprotein translocase SECY subunit; protein trans 4e-46
3mp7_A482 Preprotein translocase subunit SECY; protein trans 8e-45
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 4e-34
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 3e-29
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure
 Score =  225 bits (576), Expect = 7e-68
 Identities = 129/439 (29%), Positives = 220/439 (50%), Gaps = 38/439 (8%)

Query: 146 NAAESFFK-SEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDF 204
              ++ F+  E+R++   T ++ VI R+G  IP+PG +   + +D+L    GSV  L D 
Sbjct: 3   EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEAL-RDFLKAFEGSVFALYDI 61

Query: 205 ---GAELKLSFFQLGISPQIVASILMQVLCHIVPSLVQLRKE-GLDGHEKIKSYIWWISL 260
              G   +L+ F LG+ P I ASI+MQ+L   +PSL +L KE G  G  KI  Y  +++L
Sbjct: 62  FSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTL 121

Query: 261 GFAILEAVIVACY-----SLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGF 315
             A ++++ +A +     S        +  +  +++T   LV G M + WI D I+E G 
Sbjct: 122 FVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181

Query: 316 GQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCR 375
           G G+SLII  GI+  +   + +   ++    +     +L ++ +   + +  V V E  R
Sbjct: 182 GNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPL-TLLLIIALIIAIIVGIVYVQEAER 240

Query: 376 KVKLQY----YGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASI 431
           ++ +QY     G +L +  +          Y+P  INP+G+ P++    LL  PS L + 
Sbjct: 241 RIPIQYPGRQVGRQLYAGRKT---------YLPIKINPAGVIPIIFAQALLLIPSTLLNF 291

Query: 432 LGSPFWQHVKEILNPETSVGARPWVYYTIYAFFVFLFNIFDIA---NLPKEIADYLNKMG 488
           + +PF + + ++  P          Y  +Y  F+  F  F  A   N P E+A+ L+K G
Sbjct: 292 VQNPFIKVIADMFQPGA------IFYNFLYVTFIVFFTYFYTAVLIN-PVELAENLHKAG 344

Query: 489 ARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVL 548
           A IP V+PG+ T++YL +I     F+G L LS++A    ++  +    N  F  G T+ L
Sbjct: 345 AFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWF---NIPFYFGGTTAL 401

Query: 549 IIVGSIIELRRSYQAYNVM 567
           I+VG  ++  R  + Y + 
Sbjct: 402 IVVGVALDTFRQIETYLIQ 420
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Length = 434 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
2zjs_Y434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3j01_A435 Preprotein translocase SECY subunit; ribonucleopro 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A436 Preprotein translocase SECY subunit; protein trans 100.0
3mp7_A482 Preprotein translocase subunit SECY; protein trans 100.0
2ww9_A490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
2wwb_A476 Protein transport protein SEC61 subunit alpha ISO; 100.0
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
Probab=100.00  E-value=4.6e-95  Score=780.81  Aligned_cols=414  Identities=27%  Similarity=0.452  Sum_probs=338.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCcccc-cccc--ccccccchhhcCchhHHHHHH
Q 008056          149 ESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDE-LGDF--GAELKLSFFQLGISPQIVASI  225 (579)
Q Consensus       149 ~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~-l~~~--ga~~~~SLFsLGI~PyItASI  225 (579)
                      ..++++|+|+|++||++++++||+|++||+||+|.++.++ ..+..+++++. ++.+  |+++++|+|+|||+|||||||
T Consensus         7 ~~~~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~-~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASI   85 (434)
T 2zjs_Y            7 SALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQE-FLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAI   85 (434)
T ss_dssp             HHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHH-HHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHH
T ss_pred             hHhcchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHH-HHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHH
Confidence            3567899999999999999999999999999999987643 22221223443 3333  478999999999999999999


Q ss_pred             HHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhc-cc-cc-cccc--cchhHHHHHHHHHHHHH
Q 008056          226 LMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSL-PY-SI-YAAS--HSVKHVMVTAFLLVCGA  300 (579)
Q Consensus       226 I~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~-~~-~~-~~~~--~~~~~~l~ivl~LvaGa  300 (579)
                      |||||+.++|.++|++||||+||+|+|+||||+|+++|++||++++.... .. +. ...+  ++..+.++++++|++|+
T Consensus        86 I~QLL~~vip~l~~l~keGe~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt  165 (434)
T 2zjs_Y           86 IMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGI  165 (434)
T ss_dssp             HHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999975421 21 21 1122  34456778999999999


Q ss_pred             HHHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccceEEEEEe
Q 008056          301 MTMSWICDTISESGFGQGSSLIICVGILTGYTETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQ  380 (579)
Q Consensus       301 ~il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~rrIPIq  380 (579)
                      +++|||||+|||||+|||+|++|++||++++|+.+.+.++....+..++. .++.++++++++++++|++|+++||||||
T Consensus       166 ~~lmwLgE~It~~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~vi~~vV~~~~~~rrIPvq  244 (434)
T 2zjs_Y          166 ALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLV-AFLFFLAFIVLAFAGMAAVQQAERRIPVQ  244 (434)
T ss_dssp             HHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHH-HHHHHHHHHHHHHHHHHHHHHCEEEEEEE
T ss_pred             HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhccCcccHH-HHHHHHHHHHHHHHHHHHheeeEEEEeeh
Confidence            99999999999999999999999999999999999887765443333443 23334555566677889999999999999


Q ss_pred             eccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhC-ChhHHHHHHHcCCCCCCCCcchHHHH
Q 008056          381 YYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILG-SPFWQHVKEILNPETSVGARPWVYYT  459 (579)
Q Consensus       381 y~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~-~~~~~~i~~~l~~~~s~~~~~~iy~i  459 (579)
                      |+++.  .+++   .++++++|+|+|+|+||+||+|||++++++|+++++++. ++|..++.++++|+      .|+|.+
T Consensus       245 yakr~--~gr~---~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~l~~~------~~~y~~  313 (434)
T 2zjs_Y          245 YARKV--VGGR---VYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPT------RPSGLF  313 (434)
T ss_dssp             ECC------------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHCSS------SHHHHH
T ss_pred             hhhhh--ccCc---ccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCCC------ChHHHH
Confidence            99753  1222   456789999999999999999999999999999999764 45656677888875      389999


Q ss_pred             HHHHHHHHHHHHHh--ccChHHHHHHHHHcCCccccccCChhhHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHhhccC
Q 008056          460 IYAFFVFLFNIFDI--ANLPKEIADYLNKMGARIPNVKPGKATIEYLTKIQASTRFWGGLLLSILATSSTILDHYLRRIN  537 (579)
Q Consensus       460 iy~~~ii~Fs~f~i--~~~PkdiAe~Lkk~G~~IpGvRPG~~T~~YL~kvi~rlt~iGal~L~llAvlP~il~~~~~~i~  537 (579)
                      +|++++++|||||.  +.||||+||||||+|++|||+|||++|++||+|+++|+|++||+|++++|++|++++.. .++.
T Consensus       314 ~y~~lii~Fs~fyt~i~~np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~~-~~~~  392 (434)
T 2zjs_Y          314 IEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNL-TGIH  392 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCcc
Confidence            99999999999994  46899999999999999999999999999999999999999999999999999998654 2221


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Q 008056          538 EGFSIGFTSVLIIVGSIIELRRSYQAYNVMPSLSKALRRY  577 (579)
Q Consensus       538 ~~~~~ggTsLLIlVgvil~~~~qi~a~~~~~~y~~~l~~~  577 (579)
                       ++.+||||+||+||+++|++||+|+++.+++|+++++|.
T Consensus       393 -~~~~gGTslLI~VgV~ldt~~qi~s~~~~~~Y~~~~~~~  431 (434)
T 2zjs_Y          393 -SIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRG  431 (434)
T ss_dssp             -CGGGSSHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred             -cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Confidence             577899999999999999999999999999999999873
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 579
d1rh5a_422 f.41.1.1 (A:) Preprotein translocase SecY subunit 3e-54
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  187 bits (477), Expect = 3e-54
 Identities = 68/430 (15%), Positives = 141/430 (32%), Gaps = 60/430 (13%)

Query: 153 KSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSF 212
           +   + +L  T +++V+  I   I +     +        F            A    + 
Sbjct: 19  EITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ--IPAIFEFWQT-------ITASRIGTL 69

Query: 213 FQLGISPQIVASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVAC 272
             LGI P + A I+MQ+L  +   ++Q+     +     +     +S+    +EAV+   
Sbjct: 70  ITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL--- 124

Query: 273 YSLPYSIYAASHSVKHVMVTAFLLVCGAMTMSWICDTISESGFGQGSSLIICVGILTGY- 331
           +    +    +  +  +++    +  G++ + ++ + +S+ G G G  L I  G+     
Sbjct: 125 FVGAGAFGILTPLLAFLVI--IQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIF 182

Query: 332 --TETLYKMLSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGCRKVKLQYYGFKLASA 389
                    L + L S ++  P +  +  +   + ++ +VV   C +V++     +    
Sbjct: 183 VGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGR---- 238

Query: 390 AREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGSPFWQHVKEI------ 443
                 I       P         PV+    L A   +    L       +         
Sbjct: 239 ------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV 292

Query: 444 ------------LNPETSVGARPWVYYTIYAFFVFLFNIFDIANL---PKEIADYLNKMG 488
                       L+   S      VY         +F IF +      PK +A  +  +G
Sbjct: 293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLG 352

Query: 489 ARIPNVKPGKATIEY-LTKIQASTRFWGGLLLSILATSSTILDHYLRRINEGFSIGFTSV 547
             I   +  +  IE+ L +            +  LAT +  +         G   G T V
Sbjct: 353 MAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFI---------GALGGGTGV 403

Query: 548 LIIVGSIIEL 557
           L+ V  +  +
Sbjct: 404 LLTVSIVYRM 413

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query579
d1rh5a_422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.3e-83  Score=690.20  Aligned_cols=385  Identities=16%  Similarity=0.181  Sum_probs=304.9

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhCccccCCCccCCCchhhhhhhccCccccccccccccccchhhcCchhHH
Q 008056          142 SVLNNAAESFFKSEIRRRLFVTAVLIVISRIGYFIPLPGFDRRLIPQDYLSFVSGSVDELGDFGAELKLSFFQLGISPQI  221 (579)
Q Consensus       142 ~~~~~~~~~~~~~~l~~Ril~Tl~iL~IyrlGs~IPLPGId~~~~~~~~~~~~~g~~~~l~~~ga~~~~SLFsLGI~PyI  221 (579)
                      ..+||+++|.+|.++|||++||++++++||+|+|||+||+|.+.. +        .+.+++.++|.+++|+|+|||+|||
T Consensus         8 ~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~~-~--------~~~~~~~~~a~~~~Sif~LGI~PyI   78 (422)
T d1rh5a_           8 EKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-A--------IFEFWQTITASRIGTLITLGIGPIV   78 (422)
T ss_dssp             HHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCCC-S--------CCTTHHHHHTCCTTBTTTTTTHHHH
T ss_pred             hhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCcc-c--------HHHHHHHHhccccccHHHhChHHHH
Confidence            345999999999999999999999999999999999999998764 2        1223334456789999999999999


Q ss_pred             HHHHHHHHHHhHhhhHHHhhhcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHH
Q 008056          222 VASILMQVLCHIVPSLVQLRKEGLDGHEKIKSYIWWISLGFAILEAVIVACYSLPYSIYAASHSVKHVMVTAFLLVCGAM  301 (579)
Q Consensus       222 tASII~QLL~~~iP~L~kl~keg~~gr~ki~~~tr~ltl~~AiiQa~~i~~~~~~~~~~~~~~~~~~~l~ivl~LvaGa~  301 (579)
                      ||||+||+|+  .|+++++++|+++||+|+|++|||+|+++|++||++++. ...+.    ..+....++++++|++|+|
T Consensus        79 tASIImQLL~--~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~-~~~~~----~~~~~~~~~iv~~L~aGt~  151 (422)
T d1rh5a_          79 TAGIIMQLLV--GSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVG-AGAFG----ILTPLLAFLVIIQIAFGSI  151 (422)
T ss_dssp             HHHHHHHHHH--HHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTSSC----CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH--hhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC----CCCchHHHHHHHHHHHHHH
Confidence            9999999997  479999999999999999999999999999999999863 22221    2333456788999999999


Q ss_pred             HHHHHHhhhhccCCCCcchHHhHHhHhhHHHHHHHHH-------HHhhhcCCcccHHHHHHHHHHHHHHHHHHHhhccce
Q 008056          302 TMSWICDTISESGFGQGSSLIICVGILTGYTETLYKM-------LSQLLGSSVRWWPFMLGLLGVFTIVTMWAVVVTEGC  374 (579)
Q Consensus       302 il~WL~ElItk~GIGnG~SLiI~~gIis~lp~~l~~~-------~~~~~~~~~~~~~~ll~il~i~llvi~~iV~v~~~~  374 (579)
                      ++|||||+|||||+|||+|++|++||++++|++.++.       ......+. ..++.++ .++.+++++.+++++++++
T Consensus       152 ~lmwL~E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~~~i~i~~~vv~~~~~~  229 (422)
T d1rh5a_         152 ILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGV-PNIEYIA-PIIGTIIVFLMVVYAECMR  229 (422)
T ss_dssp             HHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTC-CCGGGTH-HHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHhccchhHHHHHHHHhhhccc-chHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999876532       11111111 1122222 2334444566789999999


Q ss_pred             EEEEEeeccccccccccCCCCCCCCCCcccccccCCCCchHHHHHHHHHhHHHHHHHhCC------------hhHHHHHH
Q 008056          375 RKVKLQYYGFKLASAAREDSPITEVEPYIPFNINPSGMQPVLTTTYLLAFPSILASILGS------------PFWQHVKE  442 (579)
Q Consensus       375 rrIPIqy~~~~~~~~~r~~~~~~~~~sYiPiKLn~aGvMPIIfAssLl~~P~~i~~~l~~------------~~~~~i~~  442 (579)
                      ||||+||++++            +.++|+|+|+|++|+||+|||++++++|+++++++.+            .+..++.+
T Consensus       230 ~~IPv~~~~~~------------~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~  297 (422)
T d1rh5a_         230 VEIPLAHGRIK------------GAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY  297 (422)
T ss_dssp             EEEECCCSSST------------TCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTG
T ss_pred             hcccccccccc------------ccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhcccccccccCCCchHHHHHH
Confidence            99999998642            3568999999999999999999999999999987621            12245677


Q ss_pred             HcCCCCCCCC------cchHHHHHHHHHHHHHHHHHh--c-cChHHHHHHHHHcCCccccccCChhhHH-HHHHhhhhHH
Q 008056          443 ILNPETSVGA------RPWVYYTIYAFFVFLFNIFDI--A-NLPKEIADYLNKMGARIPNVKPGKATIE-YLTKIQASTR  512 (579)
Q Consensus       443 ~l~~~~s~~~------~~~iy~iiy~~~ii~Fs~f~i--~-~~PkdiAe~Lkk~G~~IpGvRPG~~T~~-YL~kvi~rlt  512 (579)
                      |++++.+...      ..++|.++|++++++|++||.  . .||||+||||||+|++|||+|||++|.+ ||+|+++|+|
T Consensus       298 ~~~~~~~~~~~~~~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit  377 (422)
T d1rh5a_         298 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLT  377 (422)
T ss_dssp             GGCCCCSSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HhCCcchhhccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHHHHHHHHHHHH
Confidence            7777655432      134677788888999999994  3 5899999999999999999999999966 6999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 008056          513 FWGGLLLSILATSSTILDHYLRRINEGFSIGFTSVLIIVGSIIELRRSYQAYN  565 (579)
Q Consensus       513 ~iGal~L~llAvlP~il~~~~~~i~~~~~~ggTsLLIlVgvil~~~~qi~a~~  565 (579)
                      ++||+|++++|++|++++.+         +||||+||+||+++|++||+++++
T Consensus       378 ~~Ga~~l~~ia~~p~~l~~~---------~gGTslLI~V~v~l~~~~qi~~e~  421 (422)
T d1rh5a_         378 VMSSAFVGFLATIANFIGAL---------GGGTGVLLTVSIVYRMYEQLLRER  421 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHCCT---------TCSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHh---------cchHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999988643         389999999999999999999875