Citrus Sinensis ID: 008060

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHccccccccEEHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHEEEEHHHHHHHHHHHHHHHHHEEHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEcccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccHHHcccc
Coil and Loop (DISEMBL)
megavhgggttdasAFRECfslswknpYVLRLAFSAGIGGLLFGYDTGVISGALLYIrddfksvdrktLLQESIVSMAVAGAIIGAAIGgwmndrfgrrtSILVADFLFFVGAVIMaaapnpgaliTGRVFVGLGVGmasmtsplyiseaspakIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLpesprwlyRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIntvmyysptivqlsgfaSNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHettshspmvsavetshfsnltcpdyssaatadRWDCMkclkasspdcgfcashsnklfpgaclisnstvkdlchdesrewytrgcpskfgWLALVGLALYIIFfspgmgtapwivnseiyplrfrGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFvpetkglpiEEIEKMLELRALHFKFwekrslpdksqsv
Flexible Loop (DISEMBL)
megavhgggttdasafRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAIlrkvypaheveteirDLKESVDKeieeegssekinlvkllkTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFkfwekrslpdksqsv
Low Complexity Region (SEG)
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVagaiigaaiggWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDkeieeegssekiNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKllvislsgvilslgvlsAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQSV
Disordered region (IsUnstruct)
*************SAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEV***********************INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWE***********
Disordered Region (DISOPRED)
***************************YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL*******************VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML**********************
Disordered Region (DISEMBL)
**********TDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESV*********SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKR*********
Disordered Region (DISPRO)
****************RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPxxxxxxxxxxxxxxxxxxxxxEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQSV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
Q9C757	580	Probable inositol transpo	yes	no	0.994	0.993	0.785	0.0
O23492	582	Inositol transporter 4 OS	no	no	0.953	0.948	0.611	0.0
Q9ZQP6	580	Probable inositol transpo	no	no	0.913	0.912	0.6	0.0
Q8VZR6	509	Inositol transporter 1 OS	no	no	0.590	0.671	0.582	1e-105
Q96QE2	648	Proton myo-inositol cotra	yes	no	0.910	0.813	0.384	1e-101
Q921A2	637	Proton myo-inositol cotra	yes	no	0.886	0.805	0.398	1e-99
Q3UHK1	637	Proton myo-inositol cotra	yes	no	0.886	0.805	0.400	9e-99
P46333	461	Probable metabolite trans	yes	no	0.547	0.687	0.421	9e-65
Q0P4G6	555	Solute carrier family 2,	yes	no	0.889	0.927	0.306	2e-64
Q8BFW9	622	Solute carrier family 2,	no	no	0.873	0.813	0.303	6e-64

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/579 (78%), Positives = 514/579 (88%), Gaps = 3/579 (0%)

Query: 1   MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
           MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct: 1   MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query: 60  DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
           DFKSVDR T LQE IVSMAVAGAI+GAAIGGW ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct: 59  DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query: 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
           PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct: 119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query: 180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
           AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct: 179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            EIR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct: 239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKKLL+ISL GVI+SLG+L
Sbjct: 299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           + VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct: 359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query: 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
           K  PGAC IS+ +VKDLCH+E+R WYTRGCPS FGW AL+GL LYIIFFSPGMGT PWIV
Sbjct: 419 KEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWIV 478

Query: 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
           NSEIYPLRFRG+CGGIAATANWISNLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV+
Sbjct: 479 NSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVM 538

Query: 540 IFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQS 578
           + VPETKG+P+EEIEKMLE R++ FKFW+K+S   + Q+
Sbjct: 539 VCVPETKGMPMEEIEKMLERRSMEFKFWKKKSKLVEKQN 577

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.
Arabidopsis thaliana (taxid: 3702)

>sp|O23492|INT4_ARATH Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/564 (61%), Positives = 430/564 (76%), Gaps = 12/564 (2%)

Query: 5   VHGG-GTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS 63
           V GG    D + F EC+  +WK PY++RLA SAGIGGLLFGYDTGVISGALL+I++DF  
Sbjct: 2   VEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDE 61

Query: 64  VDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG 123
           VD+KT LQ +IVSMAVAGAI+GAA+GGW+ND+FGRR SIL+AD LF +GA++MA AP P 
Sbjct: 62  VDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPW 121

Query: 124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183
            +I GR+FVG GVGMASMTSPLYISEASPA+IRGALVSTNG LIT GQF SYLINLAF  
Sbjct: 122 VIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVH 181

Query: 184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
            PGTWRWMLGVAG+PA++QF+LML LPESPRWLYRK R  E++AIL ++YPA EVE E+ 
Sbjct: 182 TPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEME 241

Query: 244 DLKESVDKEIEEE---GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
            LK SV+ E  +E   G S    L        VRRGL AG+ +QV QQFVGINTVMYYSP
Sbjct: 242 ALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSP 301

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           +IVQ +G+ASN+TA+ LSL+TSGLNA GSIVS+ F+DR GR+KL++IS+ G+I  L +L+
Sbjct: 302 SIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILA 361

Query: 361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD----RWDCMKCLKASSPDCGFCA 415
            VF +   H+P + A E+  F+ N TC  Y+  A  +    RW+CMKCL++   +CGFCA
Sbjct: 362 TVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRS---ECGFCA 418

Query: 416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTA 475
           S      PGAC++ +  +K  C    R ++  GCPSKFG+LA+V L LYI+ ++PGMGT 
Sbjct: 419 SGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTV 478

Query: 476 PWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAAL 535
           PWIVNSEIYPLR+RG+ GGIAA +NW+SNLIV++SFLSLT A+G+S TFL+F   S   L
Sbjct: 479 PWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGL 538

Query: 536 LFVLIFVPETKGLPIEEIEKMLEL 559
            F+ + VPETKGL  EE+EK+LE+
Sbjct: 539 FFIWLLVPETKGLQFEEVEKLLEV 562

Plasma membrane inositol-proton symporter. Mediates high-affinity myoinositol-proton symport across the plasma membrane. Active with myoinositol, scylloinositol and D-chiroinositol. Low activity with mucoinositol and alloinositol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/540 (60%), Positives = 416/540 (77%), Gaps = 11/540 (2%)

Query: 27  PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGA 86
           PY++RLA SAGIGGLLFGY+TGVI+GALLYI+++F  VD KT LQE IVSM VAGAI+GA
Sbjct: 24  PYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGA 83

Query: 87  AIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLY 146
           AIGGW ND+FGRR S+L+AD LF +GA++M  A  P  +I GR+ VG GVGMASMTSPLY
Sbjct: 84  AIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLY 143

Query: 147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILM 206
           ISE SPA+IRGALVSTNG LIT GQFLSYLINLAF   PGTWRWMLGV+ IPA++QF LM
Sbjct: 144 ISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAIPAIIQFCLM 203

Query: 207 LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEE---GSSEKIN 263
           L LPESPRWLYR  R+ E++ IL ++YPA  VE EI  LKESV  E  +E   G +    
Sbjct: 204 LTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADEDIIGHTFSDK 263

Query: 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323
           L   L    VR GL AG+ +QV QQFVGINTVMYYSPTI+Q +G+ASN+TA+ L+L+TSG
Sbjct: 264 LRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTAMALALITSG 323

Query: 324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS- 382
           LNA GS+VS+ F+DR GR+KL++IS+ G+I  L +L+AVF+E ++H+P +   ++ +F+ 
Sbjct: 324 LNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASNHAPKIDKRDSRNFAK 383

Query: 383 NLTCPDY----SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCH 438
           N TCP +    +S +    W+CMKCL+    DCGFC++ + +  PGAC++ ++ +K LCH
Sbjct: 384 NATCPAFAPFTASRSPPSNWNCMKCLQY---DCGFCSNGAQEYAPGACIVQSADMKALCH 440

Query: 439 DESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAAT 498
            + R ++  GCPSKFG+LA+V L LYII ++PGMGT PWIVNSEIYPLR+RG+ GGIAA 
Sbjct: 441 SKGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYRGLAGGIAAV 500

Query: 499 ANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 558
           +NW+SNL+V+++FL+LT A+G+S TFL+F   S   L F+ + VPETKGL  EE+EK+LE
Sbjct: 501 SNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQFEEVEKLLE 560

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR6|INT1_ARATH Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/345 (58%), Positives = 264/345 (76%), Gaps = 3/345 (0%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIG 85
           N Y+L L  +AGIGGLLFGYDTGVISGALLYI+DDF+ V + + LQE+IVSMA+ GA+IG
Sbjct: 28  NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIG 87

Query: 86  AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
           AA GGW+ND +GR+ + L AD +F  GA++MAAAP+P  LI+GR+ VGLGVG+AS+T+P+
Sbjct: 88  AAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPV 147

Query: 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
           YI+EASP+++RG LVSTN  +IT GQFLSYL+N AFT+ PGTWRWMLGV+G+PA++QFIL
Sbjct: 148 YIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFIL 207

Query: 206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265
           ML +PESPRWL+ K R+ EA  +L + Y    +E EI  L  +   E EE+     +  +
Sbjct: 208 MLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAA---EEEEKQRKRTVGYL 264

Query: 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
            + +++ +R   +AG GLQ FQQF GINTVMYYSPTIVQ++GF SN+ AL LSL+ + +N
Sbjct: 265 DVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMN 324

Query: 326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS 370
           AAG++V IYFID  GRKKL + SL GVI+SL +LS  F + +  S
Sbjct: 325 AAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETS 369

Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles. Not involved in glucose or fructose transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 329/565 (58%), Gaps = 38/565 (6%)

Query: 15  AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESI 74
           A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++   + +    L QE +
Sbjct: 67  AARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK---RQLSLDALWQELL 123

Query: 75  VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGL 134
           VS  V  A + A  GG +N  FGRR +IL+A  LF  G+ ++AAA N   L+ GR+ VGL
Sbjct: 124 VSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGL 183

Query: 135 GVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLG 193
           G+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+      WR+MLG
Sbjct: 184 GIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLG 243

Query: 194 VAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI 253
           +A +PA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ E   +K ++++E 
Sbjct: 244 LAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEE 303

Query: 254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRT 313
           +E GS+  + + ++L     RR LI G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R 
Sbjct: 304 KEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRL 362

Query: 314 ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG-----VILSLG-VLSAVFHETT 367
           A+ L+ VT+  N   ++V ++ +++ GR+KL   SL+G     +IL+LG VLSA      
Sbjct: 363 AIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSPRI 422

Query: 368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS-HSNKLFPGAC 426
           +  P+  + +     N TC  YS         C +C+    PDCGFC   + + +   +C
Sbjct: 423 TFKPIAPSGQ-----NATCTRYSY--------CNECML--DPDCGFCYKMNKSTVIDSSC 467

Query: 427 LISNSTVKD-----LCHDESR------EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTA 475
           +  N    +      C +E++       W    CP+ + W AL+GL LY++FF+PGMG  
Sbjct: 468 VPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPM 527

Query: 476 PWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAAL 535
           PW VNSEIYPL  R      ++  NWI N++V+ +FL   + +     F ++   +   L
Sbjct: 528 PWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGL 587

Query: 536 LFVLIFVPETKGLPIEEIEKMLELR 560
           LF+   +PETKG  +EEIE + + R
Sbjct: 588 LFIYGCLPETKGKKLEEIESLFDNR 612

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|Q921A2|MYCT_RAT Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=2

 Score =  364 bits (934), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 216/542 (39%), Positives = 326/542 (60%), Gaps = 29/542 (5%)

Query: 33  AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWM 92
           AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV  A + A  GG +
Sbjct: 75  AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query: 93  NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
           N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct: 131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query: 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIPALLQFILMLLLPE 211
             +RG LV+ N   IT GQF + +++ AF+      WR+MLG+A IPA++QF+  L LPE
Sbjct: 191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPE 250

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL +KG+ ++A+ IL ++     ++ E   ++ S+++E +E  ++  I + ++L   
Sbjct: 251 SPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPI-ICRMLSYP 309

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
             RR L  G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++V
Sbjct: 310 PTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLV 369

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETS-HFSNLTCPDYS 390
            ++ +++ GR+KL   SL+G  ++L +L+  F  +   SP V+   T+    N TC +YS
Sbjct: 370 GVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAPSGQNATCTEYS 429

Query: 391 SAATADRWDCMKCLKASSPDCGFCAS-HSNKLFPGACLISNSTVKD-----LCHDESR-- 442
                    C +C+    PDCGFC   +S+ +   +C+  N    +      C +E++  
Sbjct: 430 Y--------CNECML--DPDCGFCYKINSSAVIDSSCVPVNKASTNEAAWGRCENETKFK 479

Query: 443 ----EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAAT 498
                W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A 
Sbjct: 480 AEDVHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAG 539

Query: 499 ANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 558
            NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + +
Sbjct: 540 INWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFD 599

Query: 559 LR 560
            R
Sbjct: 600 HR 601

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Rattus norvegicus (taxid: 10116)

>sp|Q3UHK1|MYCT_MOUSE Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=2

 Score =  361 bits (926), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 327/542 (60%), Gaps = 29/542 (5%)

Query: 33  AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWM 92
           AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV  A + A  GG +
Sbjct: 75  AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query: 93  NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
           N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct: 131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query: 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIPALLQFILMLLLPE 211
             +RG LV+ N   IT GQF + +++ AF+      WR+MLG+A IPA++QF+  L LPE
Sbjct: 191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPE 250

Query: 212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR 271
           SPRWL +KG+ ++A+ IL ++     ++ E   ++ S+++E +E  ++  I + ++L   
Sbjct: 251 SPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPI-ICRMLSYP 309

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
             RR L+ G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++V
Sbjct: 310 PTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLV 369

Query: 332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETS-HFSNLTCPDYS 390
            ++ +++ GR+KL   SL+G  ++L +L+  F  +   SP V+   T+    N TC  YS
Sbjct: 370 GVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTPSDQNTTCTGYS 429

Query: 391 SAATADRWDCMKCLKASSPDCGFCAS-HSNKLFPGACLISN--STVK---DLCHDESR-- 442
                    C +C+    PDCGFC   + + +   +C+  N  ST +     C +E++  
Sbjct: 430 Y--------CNECML--DPDCGFCYKINGSAVIDSSCVPVNKASTTEAAWGRCDNETKFK 479

Query: 443 ----EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAAT 498
                W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A 
Sbjct: 480 AEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAG 539

Query: 499 ANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 558
            NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + +
Sbjct: 540 INWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFD 599

Query: 559 LR 560
            R
Sbjct: 600 HR 601

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Mus musculus (taxid: 10090)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  248 bits (633), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/330 (42%), Positives = 207/330 (62%), Gaps = 13/330 (3%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
           F   +GGLL+GYDTGVISGALL+I +D   +   TL +  +VSM + GAI G+A+ G  +
Sbjct: 12  FFGALGGLLYGYDTGVISGALLFINND---IPLTTLTEGLVVSMLLLGAIFGSALSGTCS 68

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA 153
           DR+GRR  + V   +F +GA+  A +   G LI  RV +GL VG ++   P+Y+SE +P 
Sbjct: 69  DRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPT 128

Query: 154 KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP 213
           KIRG L + N  +I +G  L+Y++N  FT     WRWM+G+A +PA+L  I +  +PESP
Sbjct: 129 KIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESP 187

Query: 214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV 273
           RWL ++G EEEA+ I+   +   ++E E+ ++K+    E E++ ++     + +LK + +
Sbjct: 188 RWLVKRGSEEEARRIMNITHDPKDIEMELAEMKQG---EAEKKETT-----LGVLKAKWI 239

Query: 274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI 333
           R  L+ GVGL +FQQ VGINTV+YY+PTI   +G  ++ +A L ++    LN    I ++
Sbjct: 240 RPMLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGLGTSASA-LGTMGIGILNVIMCITAM 298

Query: 334 YFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
             IDR GRKKLL+    G+ LSL  LS V 
Sbjct: 299 ILIDRVGRKKLLIWGSVGITLSLAALSGVL 328

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q0P4G6|GTR10_XENTR Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus tropicalis GN=slc2a10 PE=2 SV=1

 Score =  247 bits (630), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 174/567 (30%), Positives = 285/567 (50%), Gaps = 52/567 (9%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIG 85
           +P ++  A  + +GG++FGY+ G+ISGALL ++  ++        QE++VS  + GA++ 
Sbjct: 5   SPTLILAATVSLLGGIVFGYELGIISGALLVLKTVYQ---LTCFEQEALVSAVLFGALLA 61

Query: 86  AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
           + IGG + DR+GRRT+IL ++ +   G++I+ A      LI GRV +G  + ++SM   +
Sbjct: 62  SLIGGIIIDRWGRRTAILASNLVVLAGSIILIATSTFWWLIVGRVTIGFAISISSMACCI 121

Query: 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
           Y+SE      RG LVS     IT G  +SY +N   +    +W++M G+A +PA  QFI 
Sbjct: 122 YVSEIVRPHQRGMLVSLYETGITVGILISYAMNYFLSGVNESWKYMFGLAIVPAAFQFIS 181

Query: 206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDK-EIEEEGSSEKINL 264
           +L LP  P  L                +   + +    +L+E+ +  E + +    +   
Sbjct: 182 ILFLPSKPHKLN---------------FWEQDTDDGFIELEETGEAGEFKPDTYDRQYTF 226

Query: 265 VKLLKTR-TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323
           + L +++  +R   + G+GL +FQQF G   V+YY+ TI Q  GF SN +A+L S+    
Sbjct: 227 LDLFRSKDNMRTRTLLGLGLVLFQQFTGQPNVLYYASTIFQSVGFQSNSSAVLASVGLGV 286

Query: 324 LNAAGSIVSIYFIDRTGRKKLLV---ISLSGVILSLGVLSAVFHETTSHSPMVSAV---- 376
           +  A ++++I F D+ GR+ LL+   I ++  I  +G++S    +  SH    S      
Sbjct: 287 VKVASTLIAICFADKAGRRILLLAGCIVMTIAITGIGIVSFTV-KMDSHRDCGSVTGRNM 345

Query: 377 -----ETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS 431
                  S    +   + S+  T D       +   SP     AS ++K      LIS +
Sbjct: 346 SSGESNVSQLLGIVHAETSTINTLDNSVHQLAMAIRSPSLANSASSNHK-----DLISQN 400

Query: 432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV 491
           +       E    YT        W+ L+ +  ++  FS G G   WIV SEIYP   RG 
Sbjct: 401 STVLPASPELPSNYT-----ILNWITLLSMMAFVSAFSIGFGPMTWIVLSEIYPADIRGR 455

Query: 492 CGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIE 551
                 + NW +NL++  +FL +  +IG SWTFL++GV+ + A+ F+  F+PETKG  +E
Sbjct: 456 AFAFCNSFNWAANLLITLTFLDVIASIGLSWTFLLYGVVGLLAIAFIYFFIPETKGQSLE 515

Query: 552 EIEKMLELRALHFKFWEKRSLPDKSQS 578
           EI+K         +F  KR L  +  S
Sbjct: 516 EIDK---------QFSTKRILQKRETS 533

Facilitative glucose transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q8BFW9|GTR12_MOUSE Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1

 Score =  245 bits (626), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 162/533 (30%), Positives = 281/533 (52%), Gaps = 27/533 (5%)

Query: 33  AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWM 92
           + +A I GLL GY+ G+ISGALL IR        +   QE +VS  + GA + +  GG +
Sbjct: 48  SVTAAISGLLVGYELGLISGALLQIRTLLALTCHE---QEMVVSSLLIGAFLASLTGGVL 104

Query: 93  NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
            DR+GRR +I+++  L  +G++++  + +   LI GRV +G+ + ++S+ + +YI+E +P
Sbjct: 105 IDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAP 164

Query: 153 AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES 212
              RG LVS N  +I +G   +Y+ N AF      W++M G+     +LQ I M  LP S
Sbjct: 165 QHRRGLLVSLNELMIVTGILFAYISNYAFANISNGWKYMFGLVIPLGVLQAIAMYFLPPS 224

Query: 213 PRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR- 271
           PR+L  KG+EE A  +LRK+    +   E+  +K S+  E +        +   L +++ 
Sbjct: 225 PRFLVMKGQEESAGKVLRKLRVISDTTEELTLIKSSLKDEYQ-------YSFWDLFRSKD 277

Query: 272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV 331
            +R  ++ G+ L  F Q  G   +++Y+ T+++  GF SN  A L S     +    +I 
Sbjct: 278 NMRTRILIGLTLVFFVQTTGQPNILFYASTVLKSVGFQSNEAASLASTGVGVVKVVSTIP 337

Query: 332 SIYFIDRTGRKKLLVIS---LSGVILSLGVLSAVFHET-----TSHSPMVSAVETSHFSN 383
           +   +D  G K  L I    +S  +L++G+++   +        SHS +  ++E   F  
Sbjct: 338 ATLLVDHIGSKTFLCIGSSVMSASLLTMGIVNLNINMNFTNICRSHSLLNQSLEEFVFYA 397

Query: 384 LTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD--LCHDES 441
                 S+++  + +      + +    G      N + P   +   S++ +  L   E 
Sbjct: 398 TGNLSISNSSLREHFK-----RITPYSKGSFMPMGNGMEPKGEMTFTSSLPNAGLSRTEH 452

Query: 442 REWY-TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN 500
           +    T   P+ + WL+L  L +Y+  FS G+G  PW+V SEI+P   RG    + ++ N
Sbjct: 453 QGVTDTAVVPAAYKWLSLASLLVYVAAFSIGLGPMPWLVLSEIFPGGIRGRAMALTSSMN 512

Query: 501 WISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEI 553
           W  NL+++ +FL++T  IG SW   I+ ++S+A+L FV++F+PETKG  +E+I
Sbjct: 513 WGVNLLISLTFLTVTDLIGLSWVCFIYTIMSLASLAFVVLFIPETKGCSLEQI 565

Facilitative glucose transporter.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
225443922	577	PREDICTED: probable inositol transporter	0.987	0.991	0.844	0.0
449439573	587	PREDICTED: probable inositol transporter	0.998	0.984	0.810	0.0
297851452	580	ATINT2 [Arabidopsis lyrata subsp. lyrata	0.993	0.991	0.798	0.0
15220697	580	putative inositol transporter 2 [Arabido	0.994	0.993	0.785	0.0
357450525	580	Carbohydrate transporter/sugar porter [M	0.986	0.984	0.750	0.0
356510859	580	PREDICTED: probable inositol transporter	0.989	0.987	0.763	0.0
356530545	581	PREDICTED: probable inositol transporter	0.991	0.987	0.745	0.0
356556509	573	PREDICTED: probable inositol transporter	0.977	0.987	0.732	0.0
356525098	580	PREDICTED: probable inositol transporter	0.977	0.975	0.775	0.0
326518016	580	predicted protein [Hordeum vulgare subsp	0.994	0.993	0.771	0.0

>gi|225443922|ref|XP_002278732.1| PREDICTED: probable inositol transporter 2 isoform 1 [Vitis vinifera] gi|297740750|emb|CBI30932.3| unnamed protein product [Vitis vinifera] gi|310877898|gb|ADP37180.1| putative inositol transporter [Vitis vinifera]

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/577 (84%), Positives = 530/577 (91%), Gaps = 5/577 (0%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG +H     + SAFR+CFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI++D
Sbjct: 1   MEGGIH---PVETSAFRDCFSLAWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIKED 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           F SVD++T+LQESIVSMAVAGAIIGAAIGGWMNDR+GR+T+IL+ADFLFF+GAVIMA+A 
Sbjct: 58  FDSVDKQTVLQESIVSMAVAGAIIGAAIGGWMNDRYGRKTAILIADFLFFIGAVIMASAQ 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLIT GQFL+YLINLA
Sbjct: 118 NPATLIVGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITGGQFLAYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVAG+PAL+QFILM+LLPESPRWL+RKGREEEA+AILRK+YPAHEVET
Sbjct: 178 FTKAPGTWRWMLGVAGVPALVQFILMILLPESPRWLFRKGREEEAKAILRKIYPAHEVET 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI+DLKESV+KEIEEEGSSEKIN +KL +T+TVRRGLIAGVGLQVFQQFVGINTVMYYSP
Sbjct: 238 EIQDLKESVEKEIEEEGSSEKINFIKLWRTKTVRRGLIAGVGLQVFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQ +GFASNRTALLLSLVT+GLNA GSIVSIYFIDRTGRKKLLVISL GVI+SLG+LS
Sbjct: 298 TIVQFAGFASNRTALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLVISLIGVIISLGLLS 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
           AVFHETTSHSP VS + TS F+N TCPDYSSA     WDCMKCLKASSPDCGFCAS  NK
Sbjct: 358 AVFHETTSHSPDVSPLATSRFANYTCPDYSSAKEDATWDCMKCLKASSPDCGFCASAINK 417

Query: 421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVN 480
           L PGACLISN TVKDLCH E   WYT GCPSK+GWLA+VGLALYIIFFSPGMGT PWIVN
Sbjct: 418 LLPGACLISNDTVKDLCHKEDSLWYTSGCPSKYGWLAVVGLALYIIFFSPGMGTVPWIVN 477

Query: 481 SEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540
           SEIYPLRFRGVCGGIAATANW+SNLIVAQSFLSLTQAIGTSWTFL+FGVISV AL FV+I
Sbjct: 478 SEIYPLRFRGVCGGIAATANWVSNLIVAQSFLSLTQAIGTSWTFLLFGVISVVALFFVII 537

Query: 541 FVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQ 577
           +VPETKGLPIEE+EKMLE+R L  +FWEKR  PD  Q
Sbjct: 538 YVPETKGLPIEEVEKMLEMRTLQLRFWEKR--PDSLQ 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439573|ref|XP_004137560.1| PREDICTED: probable inositol transporter 2-like [Cucumis sativus] gi|449520855|ref|XP_004167448.1| PREDICTED: probable inositol transporter 2-like [Cucumis sativus]

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/582 (81%), Positives = 516/582 (88%), Gaps = 4/582 (0%)

Query: 1   MEGAVHGGGTTDAS---AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI 57
           MEG +HGG +        FR+CFSL+WKNPYVLRLAFSAGIGG LFGYDTGVISGALLYI
Sbjct: 1   MEGGIHGGSSNSDDGSSTFRDCFSLAWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYI 60

Query: 58  RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA 117
           RDDFKSVD  T+LQE+IVSMA+AGAIIGAAIGGWMNDRFGRRT IL+ADFLFF+GAV+MA
Sbjct: 61  RDDFKSVDSSTVLQETIVSMAIAGAIIGAAIGGWMNDRFGRRTVILIADFLFFIGAVVMA 120

Query: 118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
           A+P P  LI GRVFVGLGVGMASMTSPLYISEASP KIRGALVSTNGFLIT GQFLSYLI
Sbjct: 121 ASPGPSLLIVGRVFVGLGVGMASMTSPLYISEASPPKIRGALVSTNGFLITGGQFLSYLI 180

Query: 178 NLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHE 237
           NLAFT+APGTWRWMLG+AG+PALLQFILM LLPESPRWLYRKGR EEA+ ILRK+Y  +E
Sbjct: 181 NLAFTKAPGTWRWMLGIAGLPALLQFILMFLLPESPRWLYRKGRSEEAERILRKIYSENE 240

Query: 238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMY 297
           VE EIRDLKESV+ EI+E+  SEKI+L+KLLKT+TVRRGL AGVGLQ+FQQFVGINTVMY
Sbjct: 241 VEGEIRDLKESVEAEIKEKEISEKISLIKLLKTKTVRRGLYAGVGLQIFQQFVGINTVMY 300

Query: 298 YSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG 357
           YSP+IVQL+GFASN TALLLSLVT+GLNA GSIVSIYFIDRTGRKKLLVISL GVI+SLG
Sbjct: 301 YSPSIVQLAGFASNETALLLSLVTAGLNALGSIVSIYFIDRTGRKKLLVISLFGVIISLG 360

Query: 358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH 417
           +L+AVFHETTSHSP+V    T      TCPDYS A  +  WDCMKCLKASSPDCGFCAS 
Sbjct: 361 ILTAVFHETTSHSPLVRITNTP-LKAYTCPDYSFADNSASWDCMKCLKASSPDCGFCASG 419

Query: 418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPW 477
           +NKLFPG CL++N TVK LCH E R WYTRGCPSKFGWLAL+GLALYIIFFSPGMGT PW
Sbjct: 420 TNKLFPGECLVANDTVKGLCHGEDRLWYTRGCPSKFGWLALIGLALYIIFFSPGMGTVPW 479

Query: 478 IVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLF 537
           IVNSEIYPLR+RGVCGG+AATANWISNLIVAQSFLSLTQ+IG SWTFLIFG+ISV ALLF
Sbjct: 480 IVNSEIYPLRYRGVCGGVAATANWISNLIVAQSFLSLTQSIGPSWTFLIFGLISVVALLF 539

Query: 538 VLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQSV 579
           VL  VPETKGLPIEE+E+MLE RALHFKFWEK+S     QS+
Sbjct: 540 VLTCVPETKGLPIEEVEQMLEKRALHFKFWEKKSKILDKQSI 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851452|ref|XP_002893607.1| ATINT2 [Arabidopsis lyrata subsp. lyrata] gi|297339449|gb|EFH69866.1| ATINT2 [Arabidopsis lyrata subsp. lyrata]

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/577 (79%), Positives = 516/577 (89%), Gaps = 2/577 (0%)

Query: 2   EGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 61
           EG VHGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF
Sbjct: 3   EGIVHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF 60

Query: 62  KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN 121
           KSVDR T LQE IVSMAVAGAI+GAAIGGW ND+FGRR++IL+ADFLF +GA+IMAAAP 
Sbjct: 61  KSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKFGRRSAILMADFLFLLGAIIMAAAPY 120

Query: 122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF 181
           P  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINLAF
Sbjct: 121 PSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAF 180

Query: 182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETE 241
           T   GTWRWMLG+AGIPALLQFILM  LPESPRWLYRKGREEEA+AILR++Y A +VE E
Sbjct: 181 TDVTGTWRWMLGIAGIPALLQFILMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQE 240

Query: 242 IRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPT 301
           IR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYSPT
Sbjct: 241 IRALKDSVELEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYSPT 300

Query: 302 IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSA 361
           IVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDRTGRKKLL+ISL GVI+SLG+L+ 
Sbjct: 301 IVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRTGRKKLLIISLFGVIISLGILTG 360

Query: 362 VFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL 421
           VF+E T+H+P +S++ET  F+N+TCPDY SA   + WDCM CLKASSP CG+C+S + K 
Sbjct: 361 VFYEATTHAPAISSLETQRFNNITCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPTGKE 420

Query: 422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNS 481
            PGAC IS+ +VKDLCH+E+R WYTRGCPS FGW AL+GL LYIIFFSPGMGT PWIVNS
Sbjct: 421 HPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWIVNS 480

Query: 482 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF 541
           EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV++ 
Sbjct: 481 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVVVC 540

Query: 542 VPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQS 578
           VPETKG+P+EEIEKMLE R++ FKFW+KRS   + Q+
Sbjct: 541 VPETKGMPMEEIEKMLEGRSMEFKFWKKRSKLVEKQN 577

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220697|ref|NP_174313.1| putative inositol transporter 2 [Arabidopsis thaliana] gi|75333454|sp|Q9C757.1|INT2_ARATH RecName: Full=Probable inositol transporter 2 gi|12320850|gb|AAG50560.1|AC073506_2 hypothetical protein [Arabidopsis thaliana] gi|18377759|gb|AAL67029.1| unknown protein [Arabidopsis thaliana] gi|21689841|gb|AAM67564.1| unknown protein [Arabidopsis thaliana] gi|84617969|emb|CAJ00304.1| inositol transporter 2 [Arabidopsis thaliana] gi|332193073|gb|AEE31194.1| putative inositol transporter 2 [Arabidopsis thaliana]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/579 (78%), Positives = 514/579 (88%), Gaps = 3/579 (0%)

Query: 1   MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
           MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct: 1   MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query: 60  DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
           DFKSVDR T LQE IVSMAVAGAI+GAAIGGW ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct: 59  DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query: 120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
           PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct: 119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query: 180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
           AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct: 179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            EIR LK+SV+ EI EEGSSEKIN++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct: 239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKKLL+ISL GVI+SLG+L
Sbjct: 299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           + VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct: 359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query: 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
           K  PGAC IS+ +VKDLCH+E+R WYTRGCPS FGW AL+GL LYIIFFSPGMGT PWIV
Sbjct: 419 KEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWIV 478

Query: 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
           NSEIYPLRFRG+CGGIAATANWISNLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV+
Sbjct: 479 NSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVM 538

Query: 540 IFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQS 578
           + VPETKG+P+EEIEKMLE R++ FKFW+K+S   + Q+
Sbjct: 539 VCVPETKGMPMEEIEKMLERRSMEFKFWKKKSKLVEKQN 577

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450525|ref|XP_003595539.1| Carbohydrate transporter/sugar porter [Medicago truncatula] gi|355484587|gb|AES65790.1| Carbohydrate transporter/sugar porter [Medicago truncatula]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/577 (75%), Positives = 508/577 (88%), Gaps = 6/577 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGVP---EADVSAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDR+T LQE+IVS A+AGAIIGA++GGW+NDRFGR+ +I++AD LFF+G+VIMAAA 
Sbjct: 58  FKAVDRQTWLQEAIVSTALAGAIIGASVGGWINDRFGRKKAIILADALFFIGSVIMAAAI 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSY+INLA
Sbjct: 118 NPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT APGTWRWMLGVA +PAL Q +LML+LPESPRWL+RKG+EEEA+ ILRK+YP  +VE 
Sbjct: 178 FTNAPGTWRWMLGVAAVPALTQIVLMLMLPESPRWLFRKGKEEEAKEILRKIYPPQDVED 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  LKESV+ E +++ SS K++++KLLKT+TVRRGL AGVGLQ+FQQFVGINTVMYYSP
Sbjct: 238 EIIALKESVEMESKDDSSSNKVSIIKLLKTKTVRRGLYAGVGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASN+TALLLSLVT+G+NA GSI+SIYFID+TGRKKLL+ SLSGVI+SL VL+
Sbjct: 298 TIVQLAGFASNKTALLLSLVTAGINAFGSILSIYFIDKTGRKKLLLFSLSGVIVSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH+TT+HSPMVS +E+S F+N TCPDY +A  A +WDCMKCLKA SP+CGFCAS  NK
Sbjct: 358 VVFHQTTTHSPMVSEIESSKFNN-TCPDYRTALDAAQWDCMKCLKA-SPECGFCASAGNK 415

Query: 421 LFPGACLISNSTVKDLCHDE-SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
           L PGACLISN T +D C  E SR+WYTRGCPSK GWLAL+GL+LYI+FFSPGMGT PW+V
Sbjct: 416 LLPGACLISNDTTEDQCQKEQSRQWYTRGCPSKNGWLALIGLSLYILFFSPGMGTVPWVV 475

Query: 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
           NSEIYPLR+RG+CGGIA+T+NWISNLIVAQSFLSLT AIGTS+TF+IF  ++VAA++FV+
Sbjct: 476 NSEIYPLRYRGICGGIASTSNWISNLIVAQSFLSLTDAIGTSYTFMIFIFVTVAAIVFVI 535

Query: 540 IFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKS 576
           +FVPETKGLPIEE+E MLE R L+FKFW++ S  D++
Sbjct: 536 VFVPETKGLPIEEVENMLERRTLNFKFWQRNSGSDQA 572

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510859|ref|XP_003524151.1| PREDICTED: probable inositol transporter 2-like [Glycine max]

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/584 (76%), Positives = 515/584 (88%), Gaps = 11/584 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG   GG   DASAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGA+LYIRDD
Sbjct: 1   MEG---GGVEVDASAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGAILYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDRKT LQE+IVSMA+AGAI+GAA+GGW+NDRFGRR +IL+AD LFF+G+ +MAAA 
Sbjct: 58  FKAVDRKTWLQEAIVSMALAGAIVGAAVGGWINDRFGRRKAILLADTLFFIGSAVMAAAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSYLINLA
Sbjct: 118 NPSILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLG A +PAL+Q +LM++LPESPRWL+RKGREEE + ILRK+YP  EVE 
Sbjct: 178 FTKAPGTWRWMLGAAVVPALIQIVLMMMLPESPRWLFRKGREEEGKEILRKIYPPQEVEA 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  L+ESV+ EI+E  +++ I++VK+LKT+TVRRGL AG+GLQ+FQQFVGINTVMYYSP
Sbjct: 238 EINTLRESVEIEIKEAEATDNISIVKMLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSLVTSGLNA GSI+SIYFIDRTGRKKL++ SL GV+ SL VL+
Sbjct: 298 TIVQLAGFASNRTALLLSLVTSGLNAFGSILSIYFIDRTGRKKLVLFSLCGVVFSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH++T+HSPMVSA+ETSHF+N TCPDY SAA    WDCMKCLKA SP+CGFCAS +NK
Sbjct: 358 VVFHQSTTHSPMVSALETSHFNN-TCPDYHSAANPGGWDCMKCLKA-SPNCGFCASGANK 415

Query: 421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVN 480
           L PGACLISN T KD CH+E R WYT GCPSKFGWLA+VGLALYIIFFSPGMGT PW+VN
Sbjct: 416 LLPGACLISNDTTKDQCHEEDRLWYTVGCPSKFGWLAIVGLALYIIFFSPGMGTVPWVVN 475

Query: 481 SEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540
           SEIYPLR+RG+CGG+A+T+NW+SNLIVAQSFLSLTQAIGTSWTF+IF  I++AA++FV+I
Sbjct: 476 SEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSWTFMIFIFITIAAIIFVII 535

Query: 541 FVPETKGLPIEEIEKMLELRALHFKFWEKRSL------PDKSQS 578
           FVPETKGLP+EE+EKMLE R L+FKFW++ S       P K+QS
Sbjct: 536 FVPETKGLPMEEVEKMLEGRDLNFKFWQRSSHCGEEVPPQKTQS 579

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530545|ref|XP_003533841.1| PREDICTED: probable inositol transporter 2-like isoform 1 [Glycine max]

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/586 (74%), Positives = 508/586 (86%), Gaps = 12/586 (2%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGG LFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGVP---EADISAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK VDRKT LQE+IVSMA+AGAIIGA++GGW+NDRFGR+ +IL+AD LFF+G+++MAAA 
Sbjct: 58  FKEVDRKTWLQEAIVSMALAGAIIGASVGGWINDRFGRKKAILLADTLFFIGSIVMAAAI 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLSY+INLA
Sbjct: 118 NPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT APGTWRWMLGVA +PAL Q ILM+LLPESPRWL+RKG++EEA+ ILR++YP  +VE 
Sbjct: 178 FTSAPGTWRWMLGVAAVPALTQIILMVLLPESPRWLFRKGKQEEAKEILRRIYPPQDVED 237

Query: 241 EIRDLKESVDKEIEEEGS-SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
           EI  LKES++ E+ EE S S K++++KLLKT+TVRRGL AG+GLQ+FQQFVGINTVMYYS
Sbjct: 238 EINALKESIETELNEEASASNKVSIMKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYS 297

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           PTIVQL+GFASNR ALLLSLVT+GLNA GSI+SIYFID+TGR+KLL+ SL GV++SL VL
Sbjct: 298 PTIVQLAGFASNRVALLLSLVTAGLNAFGSILSIYFIDKTGRRKLLLFSLCGVVVSLVVL 357

Query: 360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           +  FHETT+HSPMVS +ETSHF+N TCPDYS+A     WDCMKCLKA SP+CGFCAS +N
Sbjct: 358 TVAFHETTTHSPMVSTIETSHFNN-TCPDYSTAFNPGEWDCMKCLKA-SPECGFCASRAN 415

Query: 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
           KL PGACLISN T ++ C  E R WYTRGCPS++GWLALVGLALYIIFFSPGMGT PW+V
Sbjct: 416 KLLPGACLISNDTTENQCQKEDRLWYTRGCPSQYGWLALVGLALYIIFFSPGMGTVPWVV 475

Query: 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
           NSEIYPLR+RG+CGG+A+T+NW+SNLIVAQSFLSLTQAIGTS TF+IF  I+VAA++FV+
Sbjct: 476 NSEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSSTFMIFIFITVAAIVFVI 535

Query: 540 IFVPETKGLPIEEIEKMLELRALHFKFWE----KRSLP--DKSQSV 579
           IFVPETKGLPIEE+E MLE R+L+FKFW+       +P   K+QSV
Sbjct: 536 IFVPETKGLPIEEVENMLERRSLNFKFWQTSPDSNDIPIKQKNQSV 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556509|ref|XP_003546567.1| PREDICTED: probable inositol transporter 2-like [Glycine max]

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/572 (73%), Positives = 494/572 (86%), Gaps = 6/572 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG V      D SAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYI+D+
Sbjct: 1   MEGGVP---EADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIKDE 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK+VDRKT LQE+IVS A+AGAIIGA++GGW+NDRFGR+  I++AD LFF+G+VIMAAA 
Sbjct: 58  FKAVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVIADTLFFIGSVIMAAAS 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           +P  LI GRVFVG+GVGMASM SPLYISEASP ++RGALVS N FLIT GQFLSYLINLA
Sbjct: 118 SPAILIVGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVA +PALLQ +LML LPESPRWLYRKG+EEEA++IL+K+YP HEVE 
Sbjct: 178 FTKAPGTWRWMLGVAAVPALLQIVLMLTLPESPRWLYRKGKEEEAKSILKKIYPPHEVEG 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI+ LKESVD EI+E  SSEKIN+VKLL+T  VRRGL AGVGL +FQQFVGINTVMYYSP
Sbjct: 238 EIQALKESVDMEIKEAESSEKINIVKLLRTSAVRRGLYAGVGLLIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSL+T+GLNA GSI+SIYFID+TGRKKL +ISL GV+ SL +L+
Sbjct: 298 TIVQLAGFASNRTALLLSLITAGLNAFGSILSIYFIDKTGRKKLALISLCGVVFSLALLT 357

Query: 361 AVFHETTSHSPMVSAVETSHF-SNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
           A F E+  HSPMVSA+++S F +N TCPDY +A  +  W CM CLKA SP CG+CA+  +
Sbjct: 358 AAFRESEIHSPMVSAIQSSQFNNNNTCPDYKTALNSAEWTCMTCLKA-SPSCGYCAAD-D 415

Query: 420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
           KL PGACLI+N   K +C ++ R WYT GCPSK+GW AL+GLALYIIFFSPGMGT PW+V
Sbjct: 416 KLLPGACLIANVDTKKMCGNDHRAWYTTGCPSKYGWAALIGLALYIIFFSPGMGTVPWVV 475

Query: 480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
           NSEIYPLR+RGVCGGIA+T  WISNLIVA+SFLSLT+AIGT+WTF++FG++++ A+ FV+
Sbjct: 476 NSEIYPLRYRGVCGGIASTTVWISNLIVAESFLSLTEAIGTAWTFMLFGIVAIVAIFFVI 535

Query: 540 IFVPETKGLPIEEIEKMLELRALHFKFWEKRS 571
           +FVPETKG+ +EE+EKMLE R++ FKFWEKR 
Sbjct: 536 VFVPETKGVSMEEVEKMLEQRSVQFKFWEKRD 567

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525098|ref|XP_003531164.1| PREDICTED: probable inositol transporter 2-like isoform 1 [Glycine max]

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/571 (77%), Positives = 506/571 (88%), Gaps = 5/571 (0%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG   GG   D SAFREC SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD
Sbjct: 1   MEG---GGVEVDVSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           FK VD KT LQE+IVSMA+AGAIIGAA+GGW+NDRFGRR +IL+AD LFF+G+ +MAAA 
Sbjct: 58  FKEVDSKTWLQEAIVSMALAGAIIGAAVGGWINDRFGRRKAILLADTLFFIGSAVMAAAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
           NP  LI GRVFVGLGVGMASM SPLYISEASP ++RGALVS NGFLIT GQFLS LINLA
Sbjct: 118 NPSILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSNLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
           FT+APGTWRWMLGVA +PAL+Q +LM++LPESPRWL+RKGREEE +AILRK+YP  EVE 
Sbjct: 178 FTKAPGTWRWMLGVAAVPALIQIVLMMMLPESPRWLFRKGREEEGKAILRKIYPPQEVEA 237

Query: 241 EIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
           EI  LKESV+ EI+E  +S+K+++VK+LKT+TVRRGL AG+GLQ+FQQFVGINTVMYYSP
Sbjct: 238 EINTLKESVEIEIKEAEASDKVSIVKMLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSP 297

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
           TIVQL+GFASNRTALLLSL+TSGLNA GSI+SIYFIDRTGRKKL++ SL GV+ SL VL+
Sbjct: 298 TIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDRTGRKKLVLFSLCGVVFSLVVLT 357

Query: 361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK 420
            VFH++T+HSPMVSA+ETSHF+N TCPDY SA     WDCMKCLKA SP CGFCAS +NK
Sbjct: 358 VVFHQSTTHSPMVSALETSHFNN-TCPDYHSAVNPGGWDCMKCLKA-SPGCGFCASGANK 415

Query: 421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVN 480
           L PGACLIS  T KD CH E R WYTRGCPSKFGWLA+VGLALYIIFFSPGMGT PW+VN
Sbjct: 416 LLPGACLISGDTTKDQCHKEDRLWYTRGCPSKFGWLAIVGLALYIIFFSPGMGTVPWVVN 475

Query: 481 SEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI 540
           SEIYPLR+RG+CGG+A+T+NW+SNLIVAQSFLSLTQAIGTSWTF+IF  I++AA++FV+I
Sbjct: 476 SEIYPLRYRGICGGMASTSNWVSNLIVAQSFLSLTQAIGTSWTFMIFIFITIAAIIFVII 535

Query: 541 FVPETKGLPIEEIEKMLELRALHFKFWEKRS 571
           FVPETKGLP+EE+EKMLE R L+FKFW++ S
Sbjct: 536 FVPETKGLPMEEVEKMLEGRDLNFKFWQRSS 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518016|dbj|BAK07260.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/583 (77%), Positives = 505/583 (86%), Gaps = 7/583 (1%)

Query: 1   MEGAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD 60
           MEG  HG    D SAFRECFSLSW+NPY+LRLAFSAGIGGLLFGYDTGVISGALLYIRDD
Sbjct: 1   MEGGAHG---FDGSAFRECFSLSWRNPYILRLAFSAGIGGLLFGYDTGVISGALLYIRDD 57

Query: 61  FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP 120
           F+SVD+ T LQE IVSMAVAGAIIGAA+GGW NDRFGRRTSILVAD LFF GAV+MA+A 
Sbjct: 58  FRSVDKNTWLQEMIVSMAVAGAIIGAAVGGWANDRFGRRTSILVADLLFFAGAVVMASAT 117

Query: 121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA 180
            P  L+ GRVFVGLGVGMASMT+PLYISEASPA+IRGALVSTNGFLIT GQFLSYLINLA
Sbjct: 118 GPVQLVVGRVFVGLGVGMASMTAPLYISEASPARIRGALVSTNGFLITGGQFLSYLINLA 177

Query: 181 FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA-HEVE 239
           FT+APGTWRWMLGVAG+PA++QF+LML LPESPRWLYRKGR EEA+AILRK+Y A  EVE
Sbjct: 178 FTKAPGTWRWMLGVAGLPAVVQFVLMLFLPESPRWLYRKGRVEEAEAILRKIYTAEEEVE 237

Query: 240 TEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
            E+++LKESV+ E  E GSSEK++L  L+KT TVRR L+AGVGLQVFQQ VGINTVMYYS
Sbjct: 238 REMQELKESVEAEARERGSSEKVSLTALVKTATVRRALVAGVGLQVFQQLVGINTVMYYS 297

Query: 300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL 359
           P+IVQL+GFASN+TAL LSLVTSGLNA GSIVSIYFIDRTGR+KLLVISL GVI SL +L
Sbjct: 298 PSIVQLAGFASNQTALALSLVTSGLNALGSIVSIYFIDRTGRRKLLVISLVGVIASLALL 357

Query: 360 SAVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD-RWDCMKCLKASSPDCGFCASH 417
           SAVFHETTSHSP V + ET HF  +LTCPDY + +++   WDC +CLKASS +CGFCAS 
Sbjct: 358 SAVFHETTSHSPAVGSAETGHFDGSLTCPDYRTTSSSGWEWDCTRCLKASSTECGFCASG 417

Query: 418 S-NKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAP 476
           + +KL PGACL+SN+TV+D CH E R WYTRGCPS++GWLA+VGLALYI FFSPGMGT P
Sbjct: 418 AGSKLLPGACLLSNATVRDACHGEGRLWYTRGCPSRYGWLAMVGLALYISFFSPGMGTVP 477

Query: 477 WIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALL 536
           WIVNSEIYPLR RGVCGG+AATANW+SNL+VAQSFLSLT+A G +WTFLIFGV+SVAAL 
Sbjct: 478 WIVNSEIYPLRHRGVCGGVAATANWVSNLVVAQSFLSLTEATGPAWTFLIFGVLSVAALA 537

Query: 537 FVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQSV 579
           FVL+ VPETKGLPIEE+EKMLE R L  KFW  R    K+  V
Sbjct: 538 FVLVCVPETKGLPIEEVEKMLEKRELRLKFWAPRGRGSKNDGV 580

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.994	0.993	0.733	2.6e-230
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.953	0.948	0.578	4.9e-172
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.929	0.927	0.559	2.7e-164
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.544	0.618	0.559	1.6e-132
RGD|621814	637	Slc2a13 "solute carrier family	0.884	0.803	0.373	8.1e-92
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.884	0.803	0.377	2.1e-91
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.930	0.831	0.361	2.7e-91
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.941	0.841	0.360	4.5e-91
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.936	0.831	0.359	1.2e-90
ZFIN|ZDB-GENE-090812-1	546	slc2a13b "solute carrier famil	0.461	0.489	0.439	1.7e-84

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2222 (787.2 bits), Expect = 2.6e-230, P = 2.6e-230
 Identities = 426/581 (73%), Positives = 480/581 (82%)

Query:     1 MEGAV-HGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 59
             MEG + HGG   D SAF+ECFSL+WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD
Sbjct:     1 MEGGIIHGGA--DESAFKECFSLTWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD 58

Query:    60 DFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAA 119
             DFKSVDR T LQE IVSMAV           W ND+ GRR++IL+ADFLF +GA+IMAAA
Sbjct:    59 DFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAA 118

Query:   120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
             PNP  L+ GRVFVGLGVGMASMT+PLYISEASPAKIRGALVSTNGFLIT GQFLSYLINL
Sbjct:   119 PNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINL 178

Query:   180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE 239
             AFT   GTWRWMLG+AGIPALLQF+LM  LPESPRWLYRKGREEEA+AILR++Y A +VE
Sbjct:   179 AFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVE 238

Query:   240 TEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
              EIR LK+SV+            N++KL K +TVRRGLIAGVGLQVFQQFVGINTVMYYS
Sbjct:   239 QEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGLIAGVGLQVFQQFVGINTVMYYS 298

Query:   300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXX 359
             PTIVQL+GFASNRTALLLSLVT+GLNA GSI+SIYFIDR GRKK                
Sbjct:   299 PTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYFIDRIGRKKLLIISLFGVIISLGIL 358

Query:   360 XAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN 419
               VF+E  +H+P +S++ET  F+N++CPDY SA   + WDCM CLKASSP CG+C+S   
Sbjct:   359 TGVFYEAATHAPAISSLETQRFNNISCPDYKSAMNTNAWDCMTCLKASSPSCGYCSSPIG 418

Query:   420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV 479
             K  PGAC IS+ +VKDLCH+E+R WYTRGCPS FGW AL+GL LYIIFFSPGMGT PWIV
Sbjct:   419 KEHPGACWISDDSVKDLCHNENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWIV 478

Query:   480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL 539
             NSEIYPLRFRG+CGGIAATANWISNLIVAQSFLSLT+AIGTSWTFLIFGVISV ALLFV+
Sbjct:   479 NSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFVM 538

Query:   540 IFVPETKGLPIEEIEKMLELRALHFKFWEKRS-LPDK-SQS 578
             + VPETKG+P+EEIEKMLE R++ FKFW+K+S L +K +QS
Sbjct:   539 VCVPETKGMPMEEIEKMLERRSMEFKFWKKKSKLVEKQNQS 579

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1672 (593.6 bits), Expect = 4.9e-172, P = 4.9e-172
 Identities = 326/564 (57%), Positives = 402/564 (71%)

Query:     5 VHGG-GTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS 63
             V GG    D + F EC+  +WK PY++RLA SAGIGGLLFGYDTGVISGALL+I++DF  
Sbjct:     2 VEGGIAKADKTEFTECWRTTWKTPYIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDE 61

Query:    64 VDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPG 123
             VD+KT LQ +IVSMAV           W+ND+FGRR SIL+AD LF +GA++MA AP P 
Sbjct:    62 VDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPW 121

Query:   124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR 183
              +I GR+FVG GVGMASMTSPLYISEASPA+IRGALVSTNG LIT GQF SYLINLAF  
Sbjct:   122 VIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVH 181

Query:   184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
              PGTWRWMLGVAG+PA++QF+LML LPESPRWLYRK R  E++AIL ++YPA EVE E+ 
Sbjct:   182 TPGTWRWMLGVAGVPAIVQFVLMLSLPESPRWLYRKDRIAESRAILERIYPADEVEAEME 241

Query:   244 DLKESVDXXXXXXXXXXXXNLVKL---LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
              LK SV+               KL        VRRGL AG+ +QV QQFVGINTVMYYSP
Sbjct:   242 ALKLSVEAEKADEAIIGDSFSAKLKGAFGNPVVRRGLAAGITVQVAQQFVGINTVMYYSP 301

Query:   301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXX 360
             +IVQ +G+ASN+TA+ LSL+TSGLNA GSIVS+ F+DR GR+K                 
Sbjct:   302 SIVQFAGYASNKTAMALSLITSGLNALGSIVSMMFVDRYGRRKLMIISMFGIIACLIILA 361

Query:   361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATAD----RWDCMKCLKASSPDCGFCA 415
              VF +   H+P + A E+  F+ N TC  Y+  A  +    RW+CMKCL++   +CGFCA
Sbjct:   362 TVFSQAAIHAPKIDAFESRTFAPNATCSAYAPLAAENAPPSRWNCMKCLRS---ECGFCA 418

Query:   416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTA 475
             S      PGAC++ +  +K  C    R ++  GCPSKFG+LA+V L LYI+ ++PGMGT 
Sbjct:   419 SGVQPYAPGACVVLSDDMKATCSSRGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTV 478

Query:   476 PWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAAL 535
             PWIVNSEIYPLR+RG+ GGIAA +NW+SNLIV++SFLSLT A+G+S TFL+F   S   L
Sbjct:   479 PWIVNSEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGL 538

Query:   536 LFVLIFVPETKGLPIEEIEKMLEL 559
              F+ + VPETKGL  EE+EK+LE+
Sbjct:   539 FFIWLLVPETKGLQFEEVEKLLEV 562

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1599 (567.9 bits), Expect = 2.7e-164, P = 2.7e-164
 Identities = 307/549 (55%), Positives = 394/549 (71%)

Query:    18 ECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM 77
             E ++ +W+ PY++RLA SAGIGGLLFGY+TGVI+GALLYI+++F  VD KT LQE IVSM
Sbjct:    15 EVWTTTWETPYIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSM 74

Query:    78 AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVG 137
              V           W ND+FGRR S+L+AD LF +GA++M  A  P  +I GR+ VG GVG
Sbjct:    75 TVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVG 134

Query:   138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI 197
             MASMTSPLYISE SPA+IRGALVSTNG LIT GQFLSYLINLAF   PGTWRWMLGV+ I
Sbjct:   135 MASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTPGTWRWMLGVSAI 194

Query:   198 PALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXX 257
             PA++QF LML LPESPRWLYR  R+ E++ IL ++YPA  VE EI  LKESV        
Sbjct:   195 PAIIQFCLMLTLPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKESVRAETADED 254

Query:   258 XXXXXNLVKL---LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTA 314
                     KL   L    VR GL AG+ +QV QQFVGINTVMYYSPTI+Q +G+ASN+TA
Sbjct:   255 IIGHTFSDKLRGALSNPVVRHGLAAGITVQVAQQFVGINTVMYYSPTILQFAGYASNKTA 314

Query:   315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVS 374
             + L+L+TSGLNA GS+VS+ F+DR GR+K                 AVF+E ++H+P + 
Sbjct:   315 MALALITSGLNAVGSVVSMMFVDRYGRRKLMIISMFGIITCLVILAAVFNEASNHAPKID 374

Query:   375 AVETSHFS-NLTCPDYS----SAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLIS 429
               ++ +F+ N TCP ++    S +    W+CMKCL+    DCGFC++ + +  PGAC++ 
Sbjct:   375 KRDSRNFAKNATCPAFAPFTASRSPPSNWNCMKCLQY---DCGFCSNGAQEYAPGACIVQ 431

Query:   430 NSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFR 489
             ++ +K LCH + R ++  GCPSKFG+LA+V L LYII ++PGMGT PWIVNSEIYPLR+R
Sbjct:   432 SADMKALCHSKGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPWIVNSEIYPLRYR 491

Query:   490 GVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLP 549
             G+ GGIAA +NW+SNL+V+++FL+LT A+G+S TFL+F   S   L F+ + VPETKGL 
Sbjct:   492 GLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWLLVPETKGLQ 551

Query:   550 IEEIEKMLE 558
              EE+EK+LE
Sbjct:   552 FEEVEKLLE 560

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 1.6e-132, Sum P(2) = 1.6e-132
 Identities = 178/318 (55%), Positives = 234/318 (73%)

Query:    26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXX 85
             N Y+L L  +AGIGGLLFGYDTGVISGALLYI+DDF+ V + + LQE+IVSMA+      
Sbjct:    28 NSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIG 87

Query:    86 XXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
                  W+ND +GR+ + L AD +F  GA++MAAAP+P  LI+GR+ VGLGVG+AS+T+P+
Sbjct:    88 AAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPV 147

Query:   146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
             YI+EASP+++RG LVSTN  +IT GQFLSYL+N AFT+ PGTWRWMLGV+G+PA++QFIL
Sbjct:   148 YIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFIL 207

Query:   206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLV 265
             ML +PESPRWL+ K R+ EA  +L + Y    +E EI  L  + +              +
Sbjct:   208 MLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTV---GYL 264

Query:   266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
              + +++ +R   +AG GLQ FQQF GINTVMYYSPTIVQ++GF SN+ AL LSL+ + +N
Sbjct:   265 DVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMN 324

Query:   326 AAGSIVSIYFIDRTGRKK 343
             AAG++V IYFID  GRKK
Sbjct:   325 AAGTVVGIYFIDHCGRKK 342

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 203/543 (37%), Positives = 308/543 (56%)

Query:    33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWM 92
             AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +
Sbjct:    75 AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query:    93 NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
             N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct:   131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query:   153 AKIRGALVSTNGFLITSGQFLSYLINLAFT--RAPGTWRWMLGVAGIPALLQFILMLLLP 210
               +RG LV+ N   IT GQF + +++ AF+  +  G WR+MLG+A IPA++QF+  L LP
Sbjct:   191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQFLGFLFLP 249

Query:   211 ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKT 270
             ESPRWL +KG+ ++A+ IL ++     ++ E   ++ S++             + ++L  
Sbjct:   250 ESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPI-ICRMLSY 308

Query:   271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330
                RR L  G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++
Sbjct:   309 PPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTL 368

Query:   331 VSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDY 389
             V ++ +++ GR+K                   F  +   SP V+   T+    N TC +Y
Sbjct:   369 VGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAPSGQNATCTEY 428

Query:   390 SSAATADRWDCMKCLKASSPDCGFCAS-HSNKLFPGACL-ISNSTVKDL----CHDESR- 442
             S         C +C+    PDCGFC   +S+ +   +C+ ++ ++  +     C +E++ 
Sbjct:   429 SY--------CNECML--DPDCGFCYKINSSAVIDSSCVPVNKASTNEAAWGRCENETKF 478

Query:   443 -----EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA 497
                   W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A
Sbjct:   479 KAEDVHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSA 538

Query:   498 TANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 557
               NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + 
Sbjct:   539 GINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLF 598

Query:   558 ELR 560
             + R
Sbjct:   599 DHR 601

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 205/543 (37%), Positives = 306/543 (56%)

Query:    33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWM 92
             AFSA +GG LFGYDTGV+SGA+L +R   + +    + QE +VS AV            +
Sbjct:    75 AFSA-LGGFLFGYDTGVVSGAMLLLR---RQMRLGAMWQELLVSGAVGAAAVAALAGGAL 130

Query:    93 NDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP 152
             N   GRR++IL+A  L  VG+ ++AAA N   L+ GR+ VGLG+G+ASMT P+YI+E SP
Sbjct:   131 NGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 190

Query:   153 AKIRGALVSTNGFLITSGQFLSYLINLAFT--RAPGTWRWMLGVAGIPALLQFILMLLLP 210
               +RG LV+ N   IT GQF + +++ AF+  +  G WR+MLG+A IPA++QF+  L LP
Sbjct:   191 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDG-WRYMLGLAAIPAVIQFLGFLFLP 249

Query:   211 ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKT 270
             ESPRWL +KG+ ++A+ IL ++     ++ E   ++ S++             + ++L  
Sbjct:   250 ESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPI-ICRMLSY 308

Query:   271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI 330
                RR L+ G GLQ+FQQ  GINT+MYYS TI+Q+SG   +R A+ L+ +T+  N   ++
Sbjct:   309 PPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTL 368

Query:   331 VSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDY 389
             V ++ +++ GR+K                   F  +   SP V+   T+    N TC  Y
Sbjct:   369 VGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTPSDQNTTCTGY 428

Query:   390 SSAATADRWDCMKCLKASSPDCGFCAS-HSNKLFPGACLISN--STVKDL---CHDESR- 442
             S         C +C+    PDCGFC   + + +   +C+  N  ST +     C +E++ 
Sbjct:   429 SY--------CNECML--DPDCGFCYKINGSAVIDSSCVPVNKASTTEAAWGRCDNETKF 478

Query:   443 -----EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA 497
                   W    CP+ + W ALVGL LY++FF+PGMG  PW VNSEIYPL  R      +A
Sbjct:   479 KAEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSA 538

Query:   498 TANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 557
               NWI N++V+ +FL   + +     F ++   +   LLFV   +PETKG  +EEIE + 
Sbjct:   539 GINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLF 598

Query:   558 ELR 560
             + R
Sbjct:   599 DHR 601

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 206/570 (36%), Positives = 314/570 (55%)

Query:     7 GGGTTDAS-AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD 65
             GGG  D   A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++    S+D
Sbjct:    58 GGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQL-SLD 116

Query:    66 RKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL 125
                L QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AAA N   L
Sbjct:   117 --ALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETL 174

Query:   126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT--R 183
             + GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+  +
Sbjct:   175 LAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQ 234

Query:   184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
               G WR+MLG+A +PA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ E  
Sbjct:   235 KDG-WRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYD 293

Query:   244 DLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV 303
              +K +++             + ++L     RR LI G GLQ+FQQ  GINT+MYYS TI+
Sbjct:   294 SIKNNIEEEEKEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATIL 352

Query:   304 QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXXAVF 363
             Q+SG   +R A+ L+ VT+  N   ++V ++ +++ GR+K                   F
Sbjct:   353 QMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGF 412

Query:   364 HETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS-HSNKL 421
               +   SP ++    +    N TC  YS         C +C+    PDCGFC   + + +
Sbjct:   413 VLSAQVSPRITFKPIAPSGQNATCTRYSY--------CNECML--DPDCGFCYKMNKSTV 462

Query:   422 FPGACL-ISNSTVKDL----CHDESR---E---WYTRGCPSKFGWLALVGLALYIIFFSP 470
                +C+ ++ ++  +     C +E++   E   W    CP+ + W AL+GL LY++FF+P
Sbjct:   463 IDSSCVPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFFAP 522

Query:   471 GMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVI 530
             GMG  PW VNSEIYPL  R      ++  NWI N++V+ +FL   + +     F ++   
Sbjct:   523 GMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGF 582

Query:   531 SVAALLFVLIFVPETKGLPIEEIEKMLELR 560
             +   LLF+   +PETKG  +EEIE + + R
Sbjct:   583 AAVGLLFIYGCLPETKGKKLEEIESLFDNR 612

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 208/577 (36%), Positives = 317/577 (54%)

Query:     1 MEGA-VHGGGTTDAS-AFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIR 58
             ++GA   GGG  D   A R  F       +V  +A  + +GG LFGYDTGV+SGA+L ++
Sbjct:    51 LQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLK 110

Query:    59 DDFKSVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAA 118
                 S+D   + QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AA
Sbjct:   111 RQL-SLD--AMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAA 167

Query:   119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN 178
             A N   L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++
Sbjct:   168 ANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVD 227

Query:   179 LAFT--RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH 236
              AF+  +  G WR+MLG+A IPA++QF   L LPESPRWL +KG+ ++A+ IL ++    
Sbjct:   228 GAFSYLQKDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQ 286

Query:   237 EVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVM 296
              ++ E   +K +++             + ++L     RR LI G GLQ+FQQ  GINT+M
Sbjct:   287 TIDEEYDSIKNNIEEEEKEVGSAGPV-ICRMLSYPPTRRALIVGCGLQMFQQLSGINTIM 345

Query:   297 YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXX 356
             YYS TI+Q+SG   +R A+ L+ +T+  N   ++V ++ +++ GR+K             
Sbjct:   346 YYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVAL 405

Query:   357 XXXXAVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFCA 415
                   F  +   SP ++         N TC  YS         C +C+    PDCGFC 
Sbjct:   406 IILALGFLLSAQVSPPITFKPIPPLGQNTTCTRYSY--------CNECML--DPDCGFCY 455

Query:   416 S-HSNKLFPGACL-ISNSTVKDL----CHDESR----E--WYTRGCPSKFGWLALVGLAL 463
               + + +   +C+ ++ ++  +     C +E++    E  W    CP+ + W AL+GL L
Sbjct:   456 QMNKSTVIDSSCVPVNKASTNEAAWGRCENETKFKTEEIFWAYNFCPTPYSWTALLGLIL 515

Query:   464 YIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWT 523
             Y+IFF+PGMG  PW VNSEIYPL  R      ++  NWI N++V+ +FL   + +     
Sbjct:   516 YLIFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGA 575

Query:   524 FLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 560
             F ++   +   LLF+   +PETKG  +EEIE + + R
Sbjct:   576 FFLYAGFASMGLLFIYGCLPETKGKKLEEIESLFDNR 612

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 206/573 (35%), Positives = 316/573 (55%)

Query:     3 GAVHGGGTTDASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK 62
             G   GGG  + +A R+ F       +V   A  + +GG LFGYDTGV+SGA+L ++    
Sbjct:    60 GGGGGGGDLERAARRQ-FQQDETPAFVYVAAVFSALGGFLFGYDTGVVSGAMLLLKRQL- 117

Query:    63 SVDRKTLLQESIVSMAVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP 122
             S+D   L QE +VS  V            +N  FGRR +IL+A  LF  G+ ++AAA N 
Sbjct:   118 SLD--ALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFAAGSAVLAAAGNR 175

Query:   123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT 182
               L+ GR+ VGLG+G+ASMT P+YI+E SP  +RG LV+ N   IT GQF + +++ AF+
Sbjct:   176 ETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFS 235

Query:   183 --RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVET 240
               +  G WR+MLG+A IPA++QF   L LPESPRWL +KG+ ++A+ IL ++     ++ 
Sbjct:   236 YLQKDG-WRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDE 294

Query:   241 EIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSP 300
             E   +K +++             + ++L     RR LI G GLQ+FQQ  GINT+MYYS 
Sbjct:   295 EYDSIKNNIEEEEKEVGSAGPV-IYRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSA 353

Query:   301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKXXXXXXXXXXXXXXXXX 360
             TI+Q+SG   +R A+ L+ VT+  N   ++V ++ +++ GR+K                 
Sbjct:   354 TILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALLVLA 413

Query:   361 AVFHETTSHSPMVSAVETSHFS-NLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS-HS 418
               F  +   SP ++    +    N +C  YS         C +C+    PDCGFC   + 
Sbjct:   414 LGFLLSAQVSPRITFKPVAPSGQNTSCTRYSY--------CNECML--DPDCGFCYKMNK 463

Query:   419 NKLFPGACL-ISNSTVKDL----CHDESR----E--WYTRGCPSKFGWLALVGLALYIIF 467
             + +   +C+ ++ ++  +     C +E++    E  W    CP+ + W AL+GL LY++F
Sbjct:   464 STVIDSSCVPVNKASTNEAAWGRCENETKFKTEEVFWAYNFCPTPYSWTALLGLILYLVF 523

Query:   468 FSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIF 527
             F+PGMG  PW VNSEIYPL  R      ++  NWI N++V+ +FL   + +     F ++
Sbjct:   524 FAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLY 583

Query:   528 GVISVAALLFVLIFVPETKGLPIEEIEKMLELR 560
                +   LLF+   +PETKG  +EEIE + + R
Sbjct:   584 AGFAGVGLLFIYGCLPETKGKKLEEIESLFDNR 616

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-090812-1 slc2a13b "solute carrier family 2 (facilitated glucose transporter), member 13b" [Danio rerio (taxid:7955)]

 Score = 570 (205.7 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 120/273 (43%), Positives = 172/273 (63%)

Query:    28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVXXXXXXXX 87
             +V  LAF + +GG LFGYDTGV+SGA+L ++ + K     ++ QE +VS+ V        
Sbjct:    34 FVYTLAFFSALGGFLFGYDTGVVSGAMLLLKREKKL---SSVWQELLVSITVGAAAVSAL 90

Query:    88 XXXWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYI 147
                ++N RFGRR  IL+A F+F  G +I++ A N  AL+ GR+ VGLG+G+ASMT P+YI
Sbjct:    91 AGGFLNGRFGRRVCILLASFIFCAGGIILSVARNKEALLCGRLTVGLGLGIASMTVPVYI 150

Query:   148 SEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT-WRWMLGVAGIPALLQFILM 206
             +E SP  +RG LV+ N   IT GQF++ +++ AF+  P   WR+MLG++ +PA LQF+  
Sbjct:   151 AEVSPPDLRGQLVTVNTLFITGGQFIASVVDGAFSYLPHDGWRFMLGLSVVPAALQFLGF 210

Query:   207 LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVK 266
             L LPESPRWL +KG  + A  +LR++    +VE E   ++ S+              L +
Sbjct:   211 LFLPESPRWLLQKGFTQNALLVLRQIRGDVDVEEEFESIRCSIQEEQRDVAGGPV--LWR 268

Query:   267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS 299
             +L +   RR LI G GLQ+FQQ  GINTV+YYS
Sbjct:   269 MLASPPARRALIVGCGLQMFQQLAGINTVIYYS 301

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015758 "glucose transport" evidence=IDA

GO:0055056 "D-glucose transmembrane transporter activity" evidence=IDA

GO:0035428 "hexose transmembrane transport" evidence=IDA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P4G6	GTR10_XENTR	No assigned EC number	0.3068	0.8894	0.9279	yes	no
Q9C757	INT2_ARATH	No assigned EC number	0.7858	0.9948	0.9931	yes	no
Q96QE2	MYCT_HUMAN	No assigned EC number	0.3840	0.9101	0.8132	yes	no
Q921A2	MYCT_RAT	No assigned EC number	0.3985	0.8860	0.8053	yes	no
Q3UHK1	MYCT_MOUSE	No assigned EC number	0.4003	0.8860	0.8053	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	579
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-86
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	7e-85
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-69
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-26
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	6e-24
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-23
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-23
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	4e-20
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-18
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-14
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	7e-14
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	7e-13
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	2e-11
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-10
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	2e-09
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	1e-08
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-08
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-07
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-07
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	3e-07
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	7e-07
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	8e-07
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	2e-06
COG0477	338	COG0477, ProP, Permeases of the major facilitator	3e-06
pfam06609	598	pfam06609, TRI12, Fungal trichothecene efflux pump	9e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-05
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	4e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-04
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-04
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	2e-04
COG2807	395	COG2807, CynX, Cyanate permease [Inorganic ion tra	0.002
smart00423	47	smart00423, PSI, domain found in Plexins, Semaphor	0.004

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  275 bits (705), Expect = 2e-86
 Identities = 134/344 (38%), Positives = 201/344 (58%), Gaps = 19/344 (5%)

Query: 32  LAFSAGIGGLLFGYDTGVISGALLYIRDDF--------KSVDRKTLLQESIVSMAVAGAI 83
           LA  A +GG LFGYDTGVI   L  I+            +    T+L   IVS+   G +
Sbjct: 1   LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASM 141
           IG+   G + DRFGR+ S+L+ + LF +GA++   A   +   LI GRV VGLGVG  S+
Sbjct: 61  IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120

Query: 142 TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF--TRAPGTWRWMLGVAGIPA 199
             P+YISE +P K+RGAL S     IT G  ++ +I L          WR  LG+  +PA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259
           +L  I +L LPESPRWL  KG+ EEA+A+L K+    +V+ EI++ K+S+++ +E E +S
Sbjct: 181 ILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKAS 240

Query: 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL 319
                 +L + +TVR+ L+ GV LQ+FQQ  GIN + YYSPTI +  G +    +LL+++
Sbjct: 241 WL----ELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLS---DSLLVTI 293

Query: 320 VTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
           +   +N   + ++I+ +DR GR+ LL++  +G+ +   VL    
Sbjct: 294 IVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVAL 337

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  272 bits (697), Expect = 7e-85
 Identities = 143/349 (40%), Positives = 197/349 (56%), Gaps = 12/349 (3%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK-----SVDRKTLLQESIVSMAVA 80
              V  L+  A IGGL+FGYDTGVI GAL     +FK     S    + L   +VS+ + 
Sbjct: 23  YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLV 82

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN---PGALITGRVFVGLGVG 137
           G  IGA   GW++DRFGR+ S+L+   LF +GA++M  A        LI GRV +G+GVG
Sbjct: 83  GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142

Query: 138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT--WRWMLGVA 195
           +AS   P+Y+SE +P  +RGAL S     IT G  ++Y           T  WR  LG+ 
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEE 255
            IPA L F+ +  LPESPRWL  KGR EEA+  L ++      + E+ D  E +D +   
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262

Query: 256 EGSSEKINLVKLLK-TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTA 314
           E  S + +   L   TR +RR L  GV LQ FQQF GIN +MYYSPTI + +G  S   A
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGV-STDHA 321

Query: 315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
            L+S++   +N A + V+I+ +DR GR+ LL+I  +G+ + L VL  + 
Sbjct: 322 FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG 370

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  231 bits (590), Expect = 2e-69
 Identities = 132/364 (36%), Positives = 197/364 (54%), Gaps = 37/364 (10%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSMAVA 80
           + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ A+ 
Sbjct: 7   SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALI 66

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV---------IMAAAPNPGALIT---G 128
           G IIG A+GG+ ++RFGRR S+ +A  LFF+ A+               N G +      
Sbjct: 67  GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIY 126

Query: 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT- 187
           R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F I  GQ + Y +N    R+    
Sbjct: 127 RIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186

Query: 188 ------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETE 241
                 WR+M     IPALL  +L+  +PE+PR+L  +G++E+A+ ILRK+         
Sbjct: 187 WLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQA 246

Query: 242 IRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA-GVGLQVFQQFVGINTVMYYSP 300
           ++++K S+D   +  G        KLL       G+I  GV L VFQQFVGIN V+YY+P
Sbjct: 247 LQEIKHSLDHGRKTGG--------KLL---MFGVGVIVIGVMLSVFQQFVGINVVLYYAP 295

Query: 301 TIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLS 360
            I +  G AS   ALL +++   +N   ++++I  +D+ GRK L +I   G+ + +  L 
Sbjct: 296 EIFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 354

Query: 361 AVFH 364
             F+
Sbjct: 355 TAFY 358

Length = 479

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  110 bits (277), Expect = 8e-26
 Identities = 44/100 (44%), Positives = 64/100 (64%)

Query: 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513
           G +A+V + L+I FF+ G G  PW++ SEI+PL  R     IA  ANW++N IV   F +
Sbjct: 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPT 441

Query: 514 LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEI 553
           + ++IG    F+ FG ++V  L+FV  F+PETKG  +EEI
Sbjct: 442 MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  104 bits (262), Expect = 6e-24
 Identities = 44/117 (37%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 444 WYTRGCPSKFGW---LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN 500
                  +K      +A+V + L+I FF+ G G  PW++ SE++PL  R     IA  AN
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393

Query: 501 WISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 557
           W++N ++   F  +T AIG  + FL+F  + V  +LFV  FVPETKG  +EEI+++ 
Sbjct: 394 WLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  102 bits (256), Expect = 1e-23
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 4/177 (2%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
               +G  L G D G++S AL  + +D             IVS    G  +G+ + G+++
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLS---ASQAGLIVSAFSLGYALGSLLAGYLS 58

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA 153
           DRFGRR  +L+   LF +G++++A A +   L+ GR  +GLG G     +   I+E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 154 KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP 210
           K RG  +         G  L  L+      + G WRW+  +  I  LL  +L+L L 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  102 bits (255), Expect = 2e-23
 Identities = 86/343 (25%), Positives = 139/343 (40%), Gaps = 28/343 (8%)

Query: 26  NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIG 85
           + Y  R    + +  L+ GYD   +  A   I  ++  +D   L    + S  + G   G
Sbjct: 12  SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW-GLDPVQL--GFLFSAGLIGMAFG 68

Query: 86  AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
           A   G + DR GRR  +L +  LF V  ++ A A N   L+  R   GLG+G        
Sbjct: 69  ALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128

Query: 146 YISEASPAKIRGALVST--NGFLI--TSGQFLSYLINLAFTRAPGTWRWMLGVAGI-PAL 200
            +SE +P + RG  V     G+ I    G FL+  +   F      WR +  V GI P L
Sbjct: 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-----GWRSLFYVGGIAPLL 183

Query: 201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE 260
           L  +LM  LPES  +L  K R E  + I+  + P          ++      + E+ +++
Sbjct: 184 LLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQ---------MQAEAQSALPEQKATQ 233

Query: 261 KI--NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS 318
               ++ K L      R  +    L       G+  +  + P ++   GF+ +  A   +
Sbjct: 234 GTKRSVFKALFQGKTARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 319 LVTSGLNAAGSIVSIYFIDRTGRKKLLVISL-SGVILSLGVLS 360
           L   G    GSI+  +  DR G +   ++ L   V   L   +
Sbjct: 293 LFNFG-GVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGST 334

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 93.2 bits (232), Expect = 4e-20
 Identities = 76/289 (26%), Positives = 138/289 (47%), Gaps = 19/289 (6%)

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
           G ++G+ + G+++DRFGR+  +L++  +  V  V+ A +PN    +  R+ VG+G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA-FTRAPGTWRWMLGVAGIPA 199
           + + +  +E  P K R  + +      + G  L  L  +A F      WRW+     +P 
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVL--LPLVAYFIP---DWRWLQLAVSLPT 253

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS 259
            L F+L   +PESPRWL  +GR EEA  IL+++   +  +     L  S++K++    S 
Sbjct: 254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS--SK 311

Query: 260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL 319
           ++ + + L +T  +R+  +      +   F       YY   ++ L     N   + L L
Sbjct: 312 KQYSFLDLFRTPNLRKTTL----CLMMLWF--TTAFSYYG-LVLDLGNLGGN---IYLDL 361

Query: 320 VTSGL-NAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT 367
             SGL      ++++  IDR GR+  +  SL    ++L +L  V  +  
Sbjct: 362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLY 410

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 76/340 (22%), Positives = 129/340 (37%), Gaps = 42/340 (12%)

Query: 38  IGGLLFGYDTGVISGAL-LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF 96
           +   L G    ++  AL LY+ +D             +++    G  +   + G ++DRF
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISP---TEIGLLLTAFSLGYALAQPLAGRLSDRF 59

Query: 97  GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIR 156
           GRR  +L+   LF +G +++  A +   L+  RV  GLG G     +   I++  P + R
Sbjct: 60  GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119

Query: 157 GALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWL 216
           G  +         G  L  L+        G WR    +  I ALL  +L  LL       
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAALL------- 171

Query: 217 YRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG 276
                                     R   ES   +  EE  +  +   KLL    V   
Sbjct: 172 ------------------------LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWL 207

Query: 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           L+A +             ++ Y P   ++ G  S   A LL  +   L A G ++     
Sbjct: 208 LLALLLF-----GFAFFALLTYLPLYQEVLGL-SALLAGLLLGLAGLLGAIGRLLLGRLS 261

Query: 337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
           DR GR++ L+++L  +IL+   L+ +    +S   +V+ +
Sbjct: 262 DRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301

Length = 346

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSF-- 511
           G +AL+ +  Y+  F+   G   W++ SEI+P   RG    IA  A WI+N  V+ +F  
Sbjct: 363 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPM 422

Query: 512 ----LSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKM 556
                 L       +++ I+G + V A LF+  FVPETKG  +EE+E +
Sbjct: 423 MDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEAL 471

Length = 479

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 73.4 bits (180), Expect = 7e-14
 Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 22/241 (9%)

Query: 22  LSWKNPYVLRLAFSAG-IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA 80
           L+         AFSA  +G LL  +D  +++  L  +  +F      T+   S++S A+ 
Sbjct: 6   LTRAQ----WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF---GLTTVDAASLISAALI 58

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
               GA + G   DR+GRR  ++ +  LF  G +    AP    +   R+ +G+G+G   
Sbjct: 59  SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEY 118

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-----TWRWMLGVA 195
            +S  Y+ E+ P  +R      +G LI SG  +  ++               WR +  ++
Sbjct: 119 GSSAAYVIESWPKHLRNKA---SGLLI-SGYAVGAVVAAQVYSLVVPVWGDGWRALFFIS 174

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVY-----PAHEVETEIRDLKESVD 250
            +P +    L   +PE+  W  +   +   + ++  +Y      A+ V T    + +S  
Sbjct: 175 ILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG 234

Query: 251 K 251
           K
Sbjct: 235 K 235

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 70.9 bits (174), Expect = 7e-13
 Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 24/200 (12%)

Query: 31  RLAFSAGIGGLLFGYDTGVISGALLYIRDDF--KSVDRKTLLQESIVSMAVAGAIIGAAI 88
           +   +A +G LL G+D  +I+  L  ++ +F   +V   +L+  + +S    G ++GA  
Sbjct: 20  KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGA-- 77

Query: 89  GGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS 148
              M DR+GRR +++++  LF VG +    AP    L   R+ +G+G+     +S  Y+ 
Sbjct: 78  ---MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVI 134

Query: 149 EASPAKIRGALVSTNGFLIT--------SGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL 200
           E+ P  +R      +GFLI+        + Q  S ++          WR +  +  +P +
Sbjct: 135 ESWPKHLRN---KASGFLISGFSIGAVVAAQVYSLVV------PVWGWRALFFIGILPII 185

Query: 201 LQFILMLLLPESPRWLYRKG 220
               L   LPE+  W  +  
Sbjct: 186 FALWLRKNLPEAEDWKEKHA 205

Length = 496

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 80  AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMA 139
            G +I + + G + DRFGR+  +LV  F+F +   + A + N   LI  R   G G   A
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFA 68

Query: 140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---TWRWMLGVAG 196
            +     I++  P + RG  +     L+++G  L  L+             WR       
Sbjct: 69  LVAGAALIADIYPPEERGVALG----LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124

Query: 197 IPALLQFILML-LLPES 212
           I AL  FIL+  LLPE+
Sbjct: 125 ILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135
           S  + G + GA +GG + DR GR+  ++V+  LF + ++  A A +  +L+  R+  G+G
Sbjct: 57  SAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVG 116

Query: 136 VGMASMTSPLYI---SEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML 192
           +G A    P  I   SEA   ++RG  VS     +  G  L+ +I +        WR + 
Sbjct: 117 LGGA---LPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV-LAAGDAAWRHIF 172

Query: 193 GVAGI-PALLQFILMLLLPESPRWLYRKGREEEAQAILR 230
            V G+ P LL  +LM  LPES  +    G  ++   +LR
Sbjct: 173 YVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLR 211

Length = 406

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 3/185 (1%)

Query: 28  YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGA 86
            +L L     +  L F   +    G L Y+    + V   +  +  ++      G I+GA
Sbjct: 169 LLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA 228

Query: 87  AIGGWMNDRFGRRTSILVADFLFF-VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPL 145
            +GG ++DR GRR  +L+   L   +G +++A AP+   L+   + +G G+G A      
Sbjct: 229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288

Query: 146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL 205
             SE +P + RG          + G  L  L+        G +  +  +    ALL  +L
Sbjct: 289 LASELAPPEARGTASGLFNTFGSLGGALGPLL-AGLLLDTGGYGGVFLILAALALLAALL 347

Query: 206 MLLLP 210
           +LLLP
Sbjct: 348 LLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 73/325 (22%), Positives = 122/325 (37%), Gaps = 43/325 (13%)

Query: 50  ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF 109
           +S A   +++D      +     S  S    G ++G   GGW+ DRFG R ++ V   ++
Sbjct: 13  LSFAAPMLQEDLGLSAAQYGYVFSAFS---WGYVVGQFPGGWLLDRFGARKTLAVFIVIW 69

Query: 110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS 169
            V   + A A    +L   RV +G           L ++   PA  R   VS    +  S
Sbjct: 70  GVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVS----IFNS 125

Query: 170 GQFLSYLIN---LAFTRAPGTWRWMLGVAGIPALLQFILMLLL----PESPRWLYRKGRE 222
            Q L  +I    + +     +W+W   + G+  ++  +L L      P+  +WL      
Sbjct: 126 AQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL-----T 180

Query: 223 EEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVG 282
           EE + I+               L E   K      + +K  + +LLK R V        G
Sbjct: 181 EEEKYIVVG-----------GLLAEQQGK---GPSTPKKYQIKELLKDRRV-------WG 219

Query: 283 LQVFQQFVGINTVM--YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG 340
           L + Q  V I       + PT +      S   A  ++ +   +   G I+     D   
Sbjct: 220 LALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLL 279

Query: 341 RK-KLLVISLSGVILSLGVLSAVFH 364
           R+ K LV +    I++  VLS +  
Sbjct: 280 RRGKSLVFARKTAIIAGLVLSLLMF 304

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 79/347 (22%), Positives = 140/347 (40%), Gaps = 46/347 (13%)

Query: 78  AVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP------GALITGRVF 131
           A  G + G    GW+ D+ GR+    +   +  +  V    +P          L   R +
Sbjct: 65  ASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFW 124

Query: 132 VGLGVGMASMTSPLYISEASPAKIRGALVST----NGFLITSGQFLSYLINLAFT---RA 184
           +G+G+G     S +  SE +  K RGA+++      GF I +G  ++ ++   F     A
Sbjct: 125 LGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEA 184

Query: 185 PGT---------------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAIL 229
                             WR ++G   +PALL     L +PE+PR+     ++ E  A  
Sbjct: 185 AADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASD 244

Query: 230 RKVYPAHEVETEIRDL-KESVDKEIEEEGSSEKI-------NLVKLLKTRTVRRGL-IAG 280
                  ++E E  ++ K S   E+ +   S+         +   LL T      L IA 
Sbjct: 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAF 304

Query: 281 VGLQVFQQFVGINTVMYYSPTIVQLSGFAS-NRTALLLSLVTSGLNAAGSIVSIYFIDRT 339
            G+ + Q+   I + + YSP     + +    +TA+   ++       G  V+++ +D  
Sbjct: 305 YGVNLNQKV--ILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII 362

Query: 340 GRKKLLVISLSG-VILSL--GVLSAVFHETTSHSPMVSAVETSHFSN 383
           GRK    I L G  IL++   VL   ++  ++H  +   V    F+N
Sbjct: 363 GRK---PIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFAN 406

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 55.3 bits (134), Expect = 4e-08
 Identities = 79/361 (21%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 21  SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA 80
             + + P  L L  +  +     G    V  G L  I  D   V      Q  +++    
Sbjct: 4   PATARKPMWLAL-LALALAAFAIGTTEFVPVGLLPPIAADL-GVSEGAAGQ--LITAYAL 59

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMA- 139
           G  +GA +   +  R  RR  +L    LF V  ++ A AP+   L+  R   GL  G+  
Sbjct: 60  GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119

Query: 140 SMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT---WRW-MLGVA 195
           S+ + L      P K   AL      L+ +G  L+ ++ +      G    WR   L +A
Sbjct: 120 SIAAALAARLVPPGKRGRALA-----LVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIA 174

Query: 196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEE 255
            +  L   +L  LLP S                                       EI  
Sbjct: 175 VLALLALLLLWKLLPPS---------------------------------------EISG 195

Query: 256 EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTAL 315
                   L++LL+   V  GL+A   L +   F       Y  P +  ++GF+ +  +L
Sbjct: 196 SLPGPLRTLLRLLRRPGVLLGLLA-TFLFMTGHFALYT---YIRPFLESVAGFSVSAVSL 251

Query: 316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA 375
           +L L        G+++     DR G ++ L+ +L  + L+L  L+      T  SP ++ 
Sbjct: 252 VL-LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF-----TGASPALAL 304

Query: 376 V 376
            
Sbjct: 305 A 305

Length = 394

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 61/311 (19%), Positives = 121/311 (38%), Gaps = 61/311 (19%)

Query: 73  SIVSMAVAGA-----IIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN------ 121
            + + A   A      +GA + G   DR GR+ ++++   +  +G +++   P+      
Sbjct: 34  LLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGI 93

Query: 122 --PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRG------ALVSTNGFLITSGQF- 172
             P  L+  R+  G  +G     + LY++E +P   RG       + +  G L+ +    
Sbjct: 94  WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153

Query: 173 -LSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRK 231
            LSYL+        G WR    V+ +  L+   L   L E+P +   + + ++ +  + +
Sbjct: 154 LLSYLLGDDALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAE 212

Query: 232 VYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVG 291
               H                                     R+  + G+GL V      
Sbjct: 213 TLTKH-------------------------------------RKPFLLGLGL-VIATTTT 234

Query: 292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI-SLS 350
              +  Y PT +  +   S  +ALL+ +++  L      +S    DR GR+ +L+I ++ 
Sbjct: 235 FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL 294

Query: 351 GVILSLGVLSA 361
             +L++ +L A
Sbjct: 295 AALLAVPLLMA 305

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 14/108 (12%)

Query: 461 LALYII---FFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ- 516
           LA+Y++   F + G     +IV  E++P R+R    GI+A +     +I    FL L Q 
Sbjct: 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454

Query: 517 ---------AIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEK 555
                     I       IF +     +LF L+ +PETKG  +EE+  
Sbjct: 455 GDPTKGYPTGIWMGHVLEIFALFMFLGILFTLL-IPETKGKSLEELSG 501

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)

Query: 34  FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN 93
           FSA +G +  G+D  +I   +  I+ D    D +      + + A  G   G A+ G + 
Sbjct: 21  FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAF---LATAAFIGRPFGGALFGLLA 77

Query: 94  DRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP- 152
           D+FGR+  ++ +   + VG  +   A     L   R  VG+G+      +  Y  E+ P 
Sbjct: 78  DKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPK 137

Query: 153 ---AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL 209
              +K    LVS  GF I  G  ++     +F  A G WR    V  +P LL   +    
Sbjct: 138 HLKSKASAFLVS--GFGI--GNIIAAYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARA 192

Query: 210 PESPRWLYRK 219
           PES  W   K
Sbjct: 193 PESKEWEEAK 202

Length = 426

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 51.6 bits (124), Expect = 7e-07
 Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 14/184 (7%)

Query: 30  LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIG 89
           L L     +G  +   D+ +++ A+  I  D  S    + +Q  I S  +A AI    + 
Sbjct: 1   LLLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS--SLSQVQWVITSYMLANAIS-IPLT 57

Query: 90  GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISE 149
           GW+  RFG R   L++ F F +G+++   APN   +I  RV  G G G     S   +  
Sbjct: 58  GWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLN 117

Query: 150 ASPAKIRGALVSTNGFLITSGQFL-----SYLINLAFTRAPGTWRWMLGVAGIPALLQFI 204
             P + RG  ++  G  +     L      ++I          WRW+  +     ++  +
Sbjct: 118 IYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY------HWRWIFLINVPIGIIVVV 171

Query: 205 LMLL 208
           +   
Sbjct: 172 VAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 44/207 (21%), Positives = 80/207 (38%), Gaps = 28/207 (13%)

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG 135
            +   G ++GA   G + D+ GR+  +L+   +    A   +     G  +  R+  G G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268

Query: 136 VGMASMTSPLYISEASPAKIRGALVS-TNGFLITSGQFLSYLI-------NLAFTRAPG- 186
           +G A      Y +E    + RG  +S    F +  G + + +          +F      
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328

Query: 187 ---TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR 243
              +WR  + V   P +     +  +PESPR+    G+ +EA  IL+ ++          
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIH---------- 378

Query: 244 DLKESVDKEIEEEGSSEKINLVKLLKT 270
                 D  +  +G  EK+  V  +KT
Sbjct: 379 ------DTNMRAKGHPEKVFSVNHIKT 399

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 28/215 (13%)

Query: 16  FRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIV 75
            R+ F   +KN  +L L     +  LL      V +G LLY    F  V     L   ++
Sbjct: 211 LRDMFKALFKNRPLLILL----LLYLLNALAMAVRNGLLLYY---FTYVLGNAGLFSVLL 263

Query: 76  SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVG 133
            +    AI+GA +  W+  RFG++ + L+   L  +G V++   P  +    +   V  G
Sbjct: 264 LIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAG 323

Query: 134 LGVGMASMTSPLYISEA-------SPAKIRGALVSTNGFLITSGQFLS---YLINLAFT- 182
           +G+G+A++     +++        +  +  G   S   F    G  L      + LAF  
Sbjct: 324 IGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAG 383

Query: 183 --------RAPGTWRWMLGVAGIPALLQFILMLLL 209
                    A       L    IPA+L  + +L+L
Sbjct: 384 YVANATAQSAAALSGIRLLFTLIPAVLALLALLIL 418

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 73/338 (21%), Positives = 117/338 (34%), Gaps = 20/338 (5%)

Query: 31  RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGG 90
           R   +  +  LL G D G++S AL  +         + L    ++S    G  IG+ + G
Sbjct: 2   RSLLALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYG-LLLSAFFLGYAIGSLLAG 60

Query: 91  WMNDRFGRRTSILVADFLFFVGAVIMAAAPN--PGALITGRVFVGLGVGMASMTSPLYIS 148
            + DR+GRR  +++   LF +G +++A APN     L+  R+  GLG G     +   +S
Sbjct: 61  PLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLS 120

Query: 149 EASPAKIR--GALVSTNGFLITSGQFLSYLINLAFT-RAPGTWRWMLGVAGIPALLQFIL 205
           E  P       A+          G  L  L+           WR    +A +  LL  IL
Sbjct: 121 EWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLIL 180

Query: 206 MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV 265
           +LLL               A   L K+     +                  G    +  +
Sbjct: 181 VLLLDLLLAAPRLPLAVGLALIELGKLLLLLLILLLG--------------GLVLLLLGL 226

Query: 266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN 325
            L       R L+ G+GL +   FVG   ++   P ++  +G  S        L+   L 
Sbjct: 227 YLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALVGAAGGLLALILL 286

Query: 326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF 363
               ++           +L        IL  G L    
Sbjct: 287 GLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAI 324

Length = 338

>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12)

 Score = 48.1 bits (114), Expect = 9e-06
 Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 6/154 (3%)

Query: 81  GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS 140
           G  +   + G + DRFGRR  ++    +  VGA++   A     L+     +G+  G A 
Sbjct: 90  GQAVSILMMGRLTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLLAAMTLLGVAAGPAG 149

Query: 141 MTSPLYISE--ASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198
             SPL+I E  ++  K  G L+ +   +  +G    +   LA     G WRW+  +  I 
Sbjct: 150 -ASPLFIGELMSNKTKFLGLLIVSAPTIAMNGAGPYFGQRLAIQ---GNWRWIFYIYIIM 205

Query: 199 ALLQFILMLLLPESPRWLYRKGREEEAQAILRKV 232
           + +  +L+++    P +    G++   +  L K+
Sbjct: 206 SAIAVLLIIIWYHPPSFAQLHGKKARKRDELAKL 239

This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster.It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes. Length = 598

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSL 514
            L LV L L              +  SE+ P   RG   G+  T   +   +       L
Sbjct: 266 ALLLVALLLLGFGLGFAFPALLTLA-SELAPPEARGTASGLFNTFGSLGGALGPLLAGLL 324

Query: 515 TQAIGTSWTFLIFGVISVAALLFVLIFV 542
               G    FLI   +++ A L +L+  
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 74  IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP---NPGALITGRV 130
           ++ +A     IG  + G ++DR GRR  +L+A  L  + A+ +A      +   L+   +
Sbjct: 242 LLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALL 301

Query: 131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS 174
            +G G G+        +S+ +P + RG          + G  L 
Sbjct: 302 LLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 17/157 (10%)

Query: 35  SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWM 92
            A  G L+  +D  V S   LY    F      T  LLQ + V    A   +   IGGW+
Sbjct: 26  GASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGV---FAAGFLMRPIGGWL 82

Query: 93  ----NDRFGRRTSILVADFLFFVGAVIMAAAPN--------PGALITGRVFVGLGVGMAS 140
                D+ GR+ S+L++  +   G++++A  P         P  L+  R+F GL VG   
Sbjct: 83  FGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEY 142

Query: 141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
            TS  Y+SE +    +G   S     +  GQ L+ L+
Sbjct: 143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV 179

Length = 432

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           L+  + L  F    G   ++ Y P  +Q     S   A LL  +       G+++     
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 337 DRTGRKK-LLVISLSGVILSLGVLSAVFH 364
           DR GR++ LL+I L    L L +L+    
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPS 264

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 16  FRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIV 75
            RE      KNP +  L   A +  L+F      I     Y++        +       V
Sbjct: 199 TREGIKFVLKNPLLRTLLLLALLFNLVF---APAIVALFPYVQSK---YLGRGSTHYGWV 252

Query: 76  SMAVA-GAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP-GALITGRVFVG 133
             A   GA++GA + G +   F R   +  A F+  +  +++   P      +     +G
Sbjct: 253 LAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIG 312

Query: 134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI 177
           +G G  ++     +    PA++ G +      L  +   L  ++
Sbjct: 313 VGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL 356

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 449 CPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA 508
            P    +L    LA+   F         ++  +E+YP   R +  G+ +T   + ++I  
Sbjct: 405 VPVDLYFLRTA-LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSII-- 461

Query: 509 QSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEE 552
             FL            ++FG +++ A +  L F+PETKG+P+ E
Sbjct: 462 SPFLVYLGEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 73  SIVSMAVAGAIIGAAIG----GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG 128
           SIV M +   ++G A G    G ++DR+GRR  +L+  F+F + ++ +A + N   L+  
Sbjct: 40  SIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVL 99

Query: 129 RVFVGLGVGMASMTS 143
           R     G    S+ S
Sbjct: 100 RFVQAFGASAGSVIS 114

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|225365 COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%)

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTS 143
           + A     +  RFG   S+ +A  L   G +I +    P  L  G +  G G+ + ++  
Sbjct: 62  LFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLP-LLFLGTLLAGAGIAVINVLL 120

Query: 144 PLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203
           P  I    P ++ G +       + +G  L+  + +   +  G WR  LG   + ALL  
Sbjct: 121 PSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL 179

Query: 204 ILMLLLPESPR 214
           ++   LP++ R
Sbjct: 180 LIW--LPQALR 188

Length = 395

>gnl|CDD|214655 smart00423, PSI, domain found in Plexins, Semaphorins and Integrins

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 11/52 (21%)

Query: 399 DCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP 450
            C +CL A  P C +C+S         C     T  + C    + W + GCP
Sbjct: 7   SCSECLLARDPYCAWCSSQGR------C-----TSGERCDSRRQNWLSGGCP 47

Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
PRK03699	394	putative transporter; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK10504	471	putative transporter; Provisional	99.98
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.98
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.97
PRK11043	401	putative transporter; Provisional	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.97
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.97
KOG2532	466	consensus Permease of the major facilitator superf	99.97
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.96
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.96
KOG2533	495	consensus Permease of the major facilitator superf	99.96
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.96
PRK10054	395	putative transporter; Provisional	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK11902	402	ampG muropeptide transporter; Reviewed	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.94
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.93
KOG2615	451	consensus Permease of the major facilitator superf	99.93
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.92
PTZ00207	591	hypothetical protein; Provisional	99.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.9
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.88
PRK09669	444	putative symporter YagG; Provisional	99.86
PRK10429	473	melibiose:sodium symporter; Provisional	99.85
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.85
KOG2563	480	consensus Permease of the major facilitator superf	99.85
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.83
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.83
PF13347	428	MFS_2: MFS/sugar transport protein	99.83
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.82
PRK09848	448	glucuronide transporter; Provisional	99.82
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.82
PRK11462	460	putative transporter; Provisional	99.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.8
KOG3626	735	consensus Organic anion transporter [Secondary met	99.79
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.77
COG2211	467	MelB Na+/melibiose symporter and related transport	99.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.72
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.68
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.67
PRK10642	490	proline/glycine betaine transporter; Provisional	99.67
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.6
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.56
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.54
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.5
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.49
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.48
PRK09528	420	lacY galactoside permease; Reviewed	99.46
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.44
PRK15011	393	sugar efflux transporter B; Provisional	99.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.43
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.4
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
TIGR00895	398	2A0115 benzoate transport.	99.37
PRK09874	408	drug efflux system protein MdtG; Provisional	99.37
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.35
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.35
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.35
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.34
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.34
PRK10054	395	putative transporter; Provisional	99.34
PRK11663	434	regulatory protein UhpC; Provisional	99.33
PRK10489	417	enterobactin exporter EntS; Provisional	99.33
PRK12382	392	putative transporter; Provisional	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.29
PRK03545	390	putative arabinose transporter; Provisional	99.29
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.29
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.29
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.28
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.28
PRK09705	393	cynX putative cyanate transporter; Provisional	99.27
PRK03699	394	putative transporter; Provisional	99.26
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.26
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.25
PRK03633	381	putative MFS family transporter protein; Provision	99.25
PRK09952	438	shikimate transporter; Provisional	99.25
PRK03893	496	putative sialic acid transporter; Provisional	99.25
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.24
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.24
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.23
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.23
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.22
TIGR00891	405	2A0112 putative sialic acid transporter.	99.22
TIGR00900	365	2A0121 H+ Antiporter protein.	99.21
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.21
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.21
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.2
PRK11010	491	ampG muropeptide transporter; Validated	99.19
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.19
PRK10504	471	putative transporter; Provisional	99.18
PRK10091	382	MFS transport protein AraJ; Provisional	99.18
PLN00028	476	nitrate transmembrane transporter; Provisional	99.18
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.18
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.18
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.18
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.17
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.17
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.16
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.16
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.16
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.15
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.15
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.14
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.13
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.13
PRK12307	426	putative sialic acid transporter; Provisional	99.12
KOG0569	485	consensus Permease of the major facilitator superf	99.11
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.11
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.1
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.09
PRK11043	401	putative transporter; Provisional	99.08
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.07
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.05
TIGR00898	505	2A0119 cation transport protein.	99.05
PRK15075	434	citrate-proton symporter; Provisional	99.03
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.01
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.01
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.01
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.99
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.99
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.99
PRK11902	402	ampG muropeptide transporter; Reviewed	98.98
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.95
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.93
KOG3762	618	consensus Predicted transporter [General function	98.93
TIGR00901	356	2A0125 AmpG-related permease.	98.91
KOG0637	498	consensus Sucrose transporter and related proteins	98.9
KOG2615	451	consensus Permease of the major facilitator superf	98.9
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.83
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.83
PRK09848	448	glucuronide transporter; Provisional	98.82
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.82
COG0477	338	ProP Permeases of the major facilitator superfamil	98.81
TIGR00805	633	oat sodium-independent organic anion transporter.	98.81
PRK09669	444	putative symporter YagG; Provisional	98.77
PRK10133	438	L-fucose transporter; Provisional	98.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.75
PF13347	428	MFS_2: MFS/sugar transport protein	98.75
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.75
PRK10429	473	melibiose:sodium symporter; Provisional	98.74
PTZ00207	591	hypothetical protein; Provisional	98.73
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.72
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.72
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.7
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.67
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.65
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.64
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.6
KOG2532	466	consensus Permease of the major facilitator superf	98.58
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.57
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.55
KOG0254	513	consensus Predicted transporter (major facilitator	98.5
KOG3810	433	consensus Micronutrient transporters (folate trans	98.49
KOG2533	495	consensus Permease of the major facilitator superf	98.45
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.44
PRK11462	460	putative transporter; Provisional	98.43
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.41
KOG3762	618	consensus Predicted transporter [General function	98.41
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.39
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.37
COG2211	467	MelB Na+/melibiose symporter and related transport	98.37
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.32
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.25
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.24
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.23
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.2
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.14
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.14
COG3202	509	ATP/ADP translocase [Energy production and convers	98.05
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.98
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.97
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.91
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.85
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.75
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.75
PF12832	77	MFS_1_like: MFS_1 like family	97.72
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.64
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.63
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.6
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.47
PF12832	77	MFS_1_like: MFS_1 like family	97.4
KOG3626	735	consensus Organic anion transporter [Secondary met	97.2
KOG2563	480	consensus Permease of the major facilitator superf	96.95
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.78
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.71
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.62
PRK03612	521	spermidine synthase; Provisional	96.59
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.53
KOG3097	390	consensus Predicted membrane protein [Function unk	96.49
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.23
COG0477	338	ProP Permeases of the major facilitator superfamil	95.96
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.51
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.05
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.35
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	94.24
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.87
PRK03612	521	spermidine synthase; Provisional	93.68
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	92.6
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.55
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	89.11
COG3202	509	ATP/ADP translocase [Energy production and convers	88.84
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	87.4
KOG3880	409	consensus Predicted small molecule transporter inv	87.07
KOG0637	498	consensus Sucrose transporter and related proteins	86.36
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.69
PF06912	209	DUF1275: Protein of unknown function (DUF1275); In	82.74
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	82.49
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	82.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.22

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.2e-42  Score=354.67  Aligned_cols=449  Identities=34%  Similarity=0.603  Sum_probs=376.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--------cc--cccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDD--------FK--SVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~--------~~--~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~   96 (579)
                      +.........++.+-.++....+++..+.+.+-        +|  .++++ ....+.+.+++.+|.++|+++.|+++||+
T Consensus         8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~   87 (485)
T KOG0569|consen    8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF   87 (485)
T ss_pred             HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344455556666677888888777766555433        34  22222 23458899999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060           97 GRRTSILVADFLFFVGAVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (579)
Q Consensus        97 Grr~vl~~~~~l~~i~~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i  173 (579)
                      |||..+.++.++..++.++..+   .+++.+++++|++.|+..|........++.|..|++.||....+...+..+|..+
T Consensus        88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll  167 (485)
T KOG0569|consen   88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL  167 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence            9999999988888777776655   5789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH-hccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHh-cCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhh
Q 008060          174 SYLINLA-FTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYR-KGREEEAQAILRKVYPAHEVETEIRDLKESVDK  251 (579)
Q Consensus       174 g~~l~~~-l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (579)
                      +..++.- +......|++.+.+..+++++..+.+.++||||||+.. |++++++++.++..++.++.+++.++..+..++
T Consensus       168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~  247 (485)
T KOG0569|consen  168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEE  247 (485)
T ss_pred             HHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            9777743 33333359999999999999999999999999999988 899999999999999887766555544433322


Q ss_pred             hHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 008060          252 EIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV  331 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (579)
                      ++  ..+.+..+++++++++..++...+.+.+...+++.+.+...+|...++++.|. +...+.+.....++...+.+++
T Consensus       248 ~~--~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~-~~~~a~~an~~~g~v~~~~t~~  324 (485)
T KOG0569|consen  248 EE--LEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGF-TPEEAQYANLGIGIVNLLSTLV  324 (485)
T ss_pred             hc--cccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            21  12235678999999999999999999999999999999999999999999987 5667788888889999999999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCC
Q 008060          332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDC  411 (579)
Q Consensus       332 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (579)
                      +.+++||.|||++++.++.++.+..+++...........                          .|.            
T Consensus       325 ~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~~------------  366 (485)
T KOG0569|consen  325 SPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--------------------------SWL------------  366 (485)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------------------hHH------------
Confidence            999999999999999999999888887776644221100                          111            


Q ss_pred             CcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060          412 GFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV  491 (579)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  491 (579)
                                                                .|..+...+++...+..|.+|+.|.+.+|++|++.|+.
T Consensus       367 ------------------------------------------~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~a  404 (485)
T KOG0569|consen  367 ------------------------------------------SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSA  404 (485)
T ss_pred             ------------------------------------------HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHH
Confidence                                                      44557888899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHHHHHhh
Q 008060          492 CGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR  560 (579)
Q Consensus       492 ~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (579)
                      ++++....+++++++....+..+.+..|. ..|+.+.+.+++..++.++.+||||+|+.+|+.++.+++
T Consensus       405 a~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  405 AQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            99999999999999999999999999998 789999999999999999999999999999998887766

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=2e-40  Score=364.77  Aligned_cols=436  Identities=19%  Similarity=0.214  Sum_probs=333.1

Q ss_pred             HHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060           17 RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (579)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~   96 (579)
                      ++.+++....+++|.++++++++.+..+++...++.++|.+.++++++..+.   +++.+++.++.+++++++|+++||+
T Consensus       153 d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~---g~l~s~~~lG~iiG~li~G~LsDR~  229 (742)
T TIGR01299       153 ELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK---GMLGLIVYLGMMVGAFFWGGLADKL  229 (742)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3334445566788999999999999999999999999999999999988777   9999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060           97 GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL  176 (579)
Q Consensus        97 Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~  176 (579)
                      |||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.|++|+++|++.+++..+++.+|.++++.
T Consensus       230 GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~  309 (742)
T TIGR01299       230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA  309 (742)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhccCc------------CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchh----h
Q 008060          177 INLAFTRAP------------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVE----T  240 (579)
Q Consensus       177 l~~~l~~~~------------~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~----~  240 (579)
                      ++..+....            .+||+.+++.++++++.++..+++||+|+|+..+++.+++.+.++++...+...    .
T Consensus       310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~  389 (742)
T TIGR01299       310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE  389 (742)
T ss_pred             HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence            886665321            249999999888888877778889999999999999999999998887654321    1


Q ss_pred             hH---HHhhhhhhhhH--H-hhcc----------------chhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          241 EI---RDLKESVDKEI--E-EEGS----------------SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYY  298 (579)
Q Consensus       241 ~~---~~~~~~~~~~~--~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (579)
                      ..   ...+.....+.  + +...                ....+++++++.+ +++..+..... ++...++++.+..|
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~-~~~~tl~l~~~-wf~~~~~yygl~~w  467 (742)
T TIGR01299       390 KVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREITIKLMGV-WFTLSFGYYGLSVW  467 (742)
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCcc-HHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            00   00000000000  0 0000                0011355556554 44444444434 45566678999999


Q ss_pred             HHHHHHHh---C---------------------------------------C-----C----------------------
Q 008060          299 SPTIVQLS---G---------------------------------------F-----A----------------------  309 (579)
Q Consensus       299 ~~~~~~~~---~---------------------------------------~-----~----------------------  309 (579)
                      +|.+++..   .                                       .     .                      
T Consensus       468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (742)
T TIGR01299       468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK  547 (742)
T ss_pred             HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence            99876431   0                                       0     0                      


Q ss_pred             ---------------------------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          310 ---------------------------------------------SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       310 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                                                                   +.........+..++.+++.+++|+++||+|||++
T Consensus       548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~  627 (742)
T TIGR01299       548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM  627 (742)
T ss_pred             ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence                                                         00112344556678889999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      +.++.++.+++.+++.+...                                                            
T Consensus       628 l~~~~~lsai~~ll~~~~~s------------------------------------------------------------  647 (742)
T TIGR01299       628 LAGSMVLSCISCFFLSFGNS------------------------------------------------------------  647 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcc------------------------------------------------------------
Confidence            99888888888776654321                                                            


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN  504 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~  504 (579)
                                                   .+..++..+ +..++..+..+..+++++|++|++.|++++|+.++.+.+|+
T Consensus       648 -----------------------------~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGa  697 (742)
T TIGR01299       648 -----------------------------ESAMIALLC-LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAA  697 (742)
T ss_pred             -----------------------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence                                         111122222 22333334456677899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060          505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      +++|.+.+.+.+. +...+|++++++.++++++.+ ++|||+++.
T Consensus       698 iigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       698 VLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            9999999988775 456788888888888777654 569998865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.1e-39  Score=352.60  Aligned_cols=441  Identities=21%  Similarity=0.302  Sum_probs=318.1

Q ss_pred             hhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc-ccc-cchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc
Q 008060           21 SLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF-KSV-DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR   98 (579)
Q Consensus        21 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~-~~s-~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr   98 (579)
                      ++....+++++.+..++++.+.++++...++.+.|.+..++ +.+ ..+....+++.+.+.++..++++++|+++||+||
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Gr   85 (502)
T TIGR00887         6 DTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGR   85 (502)
T ss_pred             hccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34445667888888899999999999999999999887753 211 1112233899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcch------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH
Q 008060           99 RTSILVADFLFFVGAVIMAAAPN------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF  172 (579)
Q Consensus        99 r~vl~~~~~l~~i~~ll~~~a~~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~  172 (579)
                      |+++.++.++..++.++++++++      ++.++++|+++|++.|...+....+++|++|+++|++++++......+|..
T Consensus        86 r~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~  165 (502)
T TIGR00887        86 KRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGIL  165 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888765      789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccC----------------------cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHH-HHHHHH
Q 008060          173 LSYLINLAFTRA----------------------PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREE-EAQAIL  229 (579)
Q Consensus       173 ig~~l~~~l~~~----------------------~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~-~~~~~~  229 (579)
                      +++.++..+...                      ..+||+.|.+.++++++..+..+++||+|+|+..+++.+ ++.+.+
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~  245 (502)
T TIGR00887       166 AGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDM  245 (502)
T ss_pred             HHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHH
Confidence            999888765320                      114999999888888877777888999999998877764 355555


Q ss_pred             HhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          230 RKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR---TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS  306 (579)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (579)
                      ++....+..++ .++..+.    +++ ++..+.+++++++++   +.++..+.. ....+.+...++....|.|.++++.
T Consensus       246 ~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~p~i~~~~  318 (502)
T TIGR00887       246 SAVLQVKIEAE-PDEVEKA----STA-VEVPKASWSDFFTHFFKWRHGKHLLGT-AGSWFLLDIAFYGVNLNQKVILSAI  318 (502)
T ss_pred             HHHhccccccC-cccccch----hcc-ccchhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHccccccHHHHHHH
Confidence            55433211111 0110000    000 011123466676643   222222222 2222333344556667789998877


Q ss_pred             CCCchhH-----------HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 008060          307 GFASNRT-----------ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA  375 (579)
Q Consensus       307 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (579)
                      +......           .........++.+++.++.++++||+|||++++.+..+..++..++........        
T Consensus       319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~--------  390 (502)
T TIGR00887       319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS--------  390 (502)
T ss_pred             cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence            7643211           111233444566778899999999999999988888777777666654432100        


Q ss_pred             ccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcch
Q 008060          376 VETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGW  455 (579)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (579)
                                                                                                    ..
T Consensus       391 ------------------------------------------------------------------------------~~  392 (502)
T TIGR00887       391 ------------------------------------------------------------------------------TH  392 (502)
T ss_pred             ------------------------------------------------------------------------------hh
Confidence                                                                                          00


Q ss_pred             HHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh----------cccchhhH
Q 008060          456 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA----------IGTSWTFL  525 (579)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~----------~g~~~~~~  525 (579)
                      ..+....++..++..+..+..+.+.+|++|++.|+++.|+.++.++++++++|.+++.+.+.          .++...|+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  472 (502)
T TIGR00887       393 GFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLE  472 (502)
T ss_pred             HHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHH
Confidence            11222223333445566677788899999999999999999999999999999999999884          34456788


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060          526 IFGVISVAALLFVLIFVPETKGLPIEEIEK  555 (579)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (579)
                      +++++++++.++. +++|||++++.||+++
T Consensus       473 i~~~~~~~~~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       473 IFALFMFLGILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence            8888888877654 5779999999877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1.1e-38  Score=343.30  Aligned_cols=436  Identities=37%  Similarity=0.652  Sum_probs=327.6

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhc--------ccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDF--------KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~--------~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~   96 (579)
                      ..++..+......++.+..+++...+++..|.+.+++        +.+..+.   +++.+++.++..++++++|+++||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~~ig~~~~~~~~G~l~dr~   82 (479)
T PRK10077          6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL---GFCVASALIGCIIGGALGGYCSNRF   82 (479)
T ss_pred             cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455677778888899999999999999999999888        5555555   9999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhc------------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH
Q 008060           97 GRRTSILVADFLFFVGAVIMAAA------------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG  164 (579)
Q Consensus        97 Grr~vl~~~~~l~~i~~ll~~~a------------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~  164 (579)
                      |||++++++.++++++.++++++            ++++.+++.|+++|++.|...+...++++|++|+++|++++++.+
T Consensus        83 Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~  162 (479)
T PRK10077         83 GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQ  162 (479)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHH
Confidence            99999999999999998887763            235678899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc--------cCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCC
Q 008060          165 FLITSGQFLSYLINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH  236 (579)
Q Consensus       165 ~~~~iG~~ig~~l~~~l~--------~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~  236 (579)
                      .+..+|.++++.+++.+.        +.. +||+.|++.+++.++..+..+++||+|+++..+++.++.++..++.....
T Consensus       163 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~  241 (479)
T PRK10077        163 FAIIFGQLVVYFVNYFIARSGDASWLNTD-GWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT  241 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccccccC-ChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence            999999999988876553        233 49999999888777776667788999999888887777766665554332


Q ss_pred             chhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 008060          237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALL  316 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (579)
                      ......++......    .+    .......+.  ..............+.+..+++...++.|.+.++.+.. .....+
T Consensus       242 ~~~~~~~~~~~~~~----~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~-~~~~~~  310 (479)
T PRK10077        242 LATQALQEIKHSLD----HG----RKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS-TDIALL  310 (479)
T ss_pred             hHHHHHHHHHHHHH----Hh----hhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCC-CchHHH
Confidence            22111111110000    00    000011111  01111222233334455556667778889888877664 344556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccc
Q 008060          317 LSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATAD  396 (579)
Q Consensus       317 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (579)
                      .....++..+++.+++++++||+|||++++.+..+++++.+++........                             
T Consensus       311 ~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~-----------------------------  361 (479)
T PRK10077        311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------------------------  361 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc-----------------------------
Confidence            666777888999999999999999999999999888888777654432110                             


Q ss_pred             cccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccc
Q 008060          397 RWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAP  476 (579)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (579)
                                                                              ..+.....++++..++..+..+..
T Consensus       362 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  385 (479)
T PRK10077        362 --------------------------------------------------------PGIVALLSMLFYVAAFAMSWGPVC  385 (479)
T ss_pred             --------------------------------------------------------ccHHHHHHHHHHHHHHhccccchh
Confidence                                                                    012233444555555555556777


Q ss_pred             ceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH------HhcccchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060          477 WIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT------QAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPI  550 (579)
Q Consensus       477 ~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (579)
                      +.+++|.+|++.|++++|+.+..+++++++++.+++.+.      +..++...|++++++++++.++.+++.||+|+++.
T Consensus       386 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  465 (479)
T PRK10077        386 WVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTL  465 (479)
T ss_pred             HHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCH
Confidence            899999999999999999999999999999987776554      56778888999998888888887778999999998


Q ss_pred             HHHHHHHHhh
Q 008060          551 EEIEKMLELR  560 (579)
Q Consensus       551 ~~~~~~~~~~  560 (579)
                      ||.++..+++
T Consensus       466 ~~~~~~~~~~  475 (479)
T PRK10077        466 EEMEALWEPE  475 (479)
T ss_pred             HHHHHHHhhc
Confidence            8877766544

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=5.9e-38  Score=339.51  Aligned_cols=451  Identities=42%  Similarity=0.695  Sum_probs=363.4

Q ss_pred             hhHHHHHHHHHHHHHhhhh--hhhhhhhhhhhhhhcccccchh----hHHHHHHHHHHHHHHHHHHhHhhhhccccchHH
Q 008060           28 YVLRLAFSAGIGGLLFGYD--TGVISGALLYIRDDFKSVDRKT----LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTS  101 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~--~~~~~~~lp~i~~~~~~s~~~~----~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~v  101 (579)
                      ..........+..+..+++  ....++....+.++........    ...+++.+++.++..+++++.|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4445555556666666665  5566777777776543322222    233899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          102 ILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       102 l~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      ++++.+++.++.+++++++|+++++++|+++|+|.|........+++|..|++.||...+..+....+|..++..++...
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999996666555


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCC--CchhhhHHHhhhhhhhhHHhhccc
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA--HEVETEIRDLKESVDKEIEEEGSS  259 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                      .+...+||..+.+..+++++..+..+++||+|+|+.++++.+++++.+++..+.  .+...+.++....  ...+.....
T Consensus       202 ~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~--~~~~~~~~~  279 (513)
T KOG0254|consen  202 SKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIK--LLVEAEVAE  279 (513)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHH--HHHhhhccc
Confidence            433114999999999999888888888999999999999999999999998883  3333333333311  111111111


Q ss_pred             hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (579)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (579)
                      .+....++++ |..++..++++.+..++++.+++...+|.+.+++..+..+..  .......++..+++.+++.++.||+
T Consensus       280 ~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~  356 (513)
T KOG0254|consen  280 GKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT--FLASIILGVVNFLGTLVATYLVDRF  356 (513)
T ss_pred             ccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1113444554 778888888999999999999999999999999999886554  5555666777888999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCC
Q 008060          340 GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN  419 (579)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (579)
                      |||++++.+...+.++.+++.........+..                                                
T Consensus       357 gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~------------------------------------------------  388 (513)
T KOG0254|consen  357 GRRKLLLFGAAGMSICLVILAVVGVFALYYPN------------------------------------------------  388 (513)
T ss_pred             ccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC------------------------------------------------
Confidence            99999999999999999988877654322100                                                


Q ss_pred             CCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH
Q 008060          420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA  499 (579)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~  499 (579)
                                                   +.....++.++..+++...+..+++++.|.+.+|++|.+.|+.+.++....
T Consensus       389 -----------------------------~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~  439 (513)
T KOG0254|consen  389 -----------------------------SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAV  439 (513)
T ss_pred             -----------------------------cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHH
Confidence                                         123357888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH-HhhhhccCCCCCChHHHHHHHHhh
Q 008060          500 NWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALL-FVLIFVPETKGLPIEEIEKMLELR  560 (579)
Q Consensus       500 ~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  560 (579)
                      +++.+.+....+....+..+....|..++.++.+..+ +.++++||||++++||+++.++++
T Consensus       440 n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  440 NWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            9999998888887777766545677777777777777 778899999999999999877665

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=1.2e-37  Score=333.99  Aligned_cols=442  Identities=41%  Similarity=0.683  Sum_probs=324.9

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccc--------cchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSV--------DRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG   97 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s--------~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G   97 (579)
                      .++.+.....+.++.+...++...+++..+.+..+++.+        ..+.   +++.+++.++..++++++|+++||+|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~l~d~~g   99 (481)
T TIGR00879        23 YWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLW---GLVVSIFLVGGFIGALFAGWLSDRFG   99 (481)
T ss_pred             cHHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHH---HHHHHHHHHHHHHHHHHhhHhhhhhh
Confidence            344455555666677788889999999999999988876        4455   99999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHH
Q 008060           98 RRTSILVADFLFFVGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS  174 (579)
Q Consensus        98 rr~vl~~~~~l~~i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig  174 (579)
                      ||++++++.++++++.+++.+.   .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++
T Consensus       100 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~  179 (481)
T TIGR00879       100 RKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVA  179 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999988554   4456899999999999999999999999999999999999999999999999999


Q ss_pred             HHHH---HHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhh
Q 008060          175 YLIN---LAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDK  251 (579)
Q Consensus       175 ~~l~---~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (579)
                      +.++   ....+..+ ||+.|++.++..++..+..+++||+|+++..+++.++..+..++.......+....+.....+.
T Consensus       180 ~~~~~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (481)
T TIGR00879       180 YGFGSGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDI  258 (481)
T ss_pred             HHHHHHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence            9999   66555555 9999999777776666667788999988776666665555444433222111111110000000


Q ss_pred             hHHhhccchhhhHHHhhhcch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 008060          252 EIEEEGSSEKINLVKLLKTRT-VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI  330 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (579)
                      ....+.+..+..+.+.++..+ .....+....+..+..........++.|.++++.+... ..++.......++.+++.+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~  337 (481)
T TIGR00879       259 KRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVST-DHAFLVSIIVGAVNFAFTF  337 (481)
T ss_pred             HHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHH
Confidence            000111111111233333211 22333333334444444555566778888888877654 6677888888888999999


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCC
Q 008060          331 VSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPD  410 (579)
Q Consensus       331 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (579)
                      +.++++||++||+.+..++.+.+++.+++.........+..                                       
T Consensus       338 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------  378 (481)
T TIGR00879       338 VAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS---------------------------------------  378 (481)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc---------------------------------------
Confidence            99999999999999988887777777666543221100000                                       


Q ss_pred             CCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccch
Q 008060          411 CGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRG  490 (579)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  490 (579)
                                                              ....+..+....++..+++.+..+....+..|.+|++.|+
T Consensus       379 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  418 (481)
T TIGR00879       379 ----------------------------------------KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP  418 (481)
T ss_pred             ----------------------------------------cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHH
Confidence                                                    0012333455556666666666677778889999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChH
Q 008060          491 VCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIE  551 (579)
Q Consensus       491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (579)
                      +++|+.++..++|++++|.+.+.+.++.|+.+.|++.+++++++.++.+++.||+|+++.+
T Consensus       419 ~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       419 KGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            9999999999999999999999999999999999999999999888877778988877653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.3e-37  Score=308.44  Aligned_cols=401  Identities=17%  Similarity=0.126  Sum_probs=314.5

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      +++|+.+++.+++++...++.+..++...|.+.++.+++..+.   |++.+.+.+.|.++..+.|.++||.++|+.+.++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l---G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~g  100 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL---GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFG  100 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHH
Confidence            4578899999999999999999999999999999999999888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH--HHhcc
Q 008060          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN--LAFTR  183 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~--~~l~~  183 (579)
                      +++.++.+++++++++++.+.++-++.|+++|..+|++...++.|+|+++||+..++++++.++|..+.|++.  +++..
T Consensus       101 Lilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         101 LILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999  88887


Q ss_pred             CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc---
Q 008060          184 APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS---  259 (579)
Q Consensus       184 ~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  259 (579)
                      +.+ ||..|++.++++++..++ ++..+++|+..-...-++                     ..++..+..+++++.   
T Consensus       181 ~~~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~---------------------~~~d~~e~~~~~~~~~~l  238 (448)
T COG2271         181 HGG-WRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEE---------------------YRGDPLEIYEEEKENEGL  238 (448)
T ss_pred             ccc-hhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHH---------------------hhcCchhhhhhhccCCCc
Confidence            776 999999999988877766 666788875221111000                     000000000111111   


Q ss_pred             --hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          260 --EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID  337 (579)
Q Consensus       260 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  337 (579)
                        .+.-.+..+++|.+|..     .+..++....-+.+..|.|.|+.+..+.+...+.......-.++++|++++|+++|
T Consensus       239 s~~~i~~~YVL~Nk~iW~l-----a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSD  313 (448)
T COG2271         239 TAWQIFVKYVLKNKLIWLL-----ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSD  313 (448)
T ss_pred             cHHHHHHHHHHcChHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence              12233445566665543     34444455568899999999999998889999999999999999999999999999


Q ss_pred             hc--CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCccc
Q 008060          338 RT--GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA  415 (579)
Q Consensus       338 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (579)
                      |+  |||....+.+.+.....++......                                                   
T Consensus       314 klfkgrR~p~~~i~~~~i~~~~~~~w~~~---------------------------------------------------  342 (448)
T COG2271         314 KLFKGRRGPMALIFMLLITASLVLYWLAP---------------------------------------------------  342 (448)
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHHcCC---------------------------------------------------
Confidence            96  5666554433333222222222111                                                   


Q ss_pred             CCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH
Q 008060          416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI  495 (579)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi  495 (579)
                                                         ++ ++......++.++++..|..-+.-....|..|.+..|++.|+
T Consensus       343 -----------------------------------~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf  386 (448)
T COG2271         343 -----------------------------------NG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGF  386 (448)
T ss_pred             -----------------------------------Cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhch
Confidence                                               11 223344444444444444443445678899999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          496 AATANWI-SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       496 ~~~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      ...++++ |++.+....|.+.|..||...|.++.+.++++.++......
T Consensus       387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999 88899999999999999999999998888888877655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=4.1e-36  Score=322.02  Aligned_cols=413  Identities=14%  Similarity=0.037  Sum_probs=294.6

Q ss_pred             hhhHHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhh
Q 008060           14 SAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN   93 (579)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~ls   93 (579)
                      .+++|++.+....+..+.++..+++.++..++++..+++..|.+.+|+|.+..+.   |++.+.+.+++.+++++.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~   88 (467)
T PRK09556         12 LDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL---GMIGLGFSITYGVGKTLVGYYA   88 (467)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhhHh
Confidence            3455544444445567788888999999999999999999999999999998888   9999999999999999999999


Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHH
Q 008060           94 DRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLIT  168 (579)
Q Consensus        94 Dr~Grr~vl~~~~~l~~i~~ll~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~  168 (579)
                      ||+|||+++.+++++++++.++.++     +++++.+++.|+++|++.+...|...++++||+|+++|+++++++..+.+
T Consensus        89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~  168 (467)
T PRK09556         89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN  168 (467)
T ss_pred             hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence            9999999999888888777766654     68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccCc--CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHh
Q 008060          169 SGQFLSYLINLAFTRAP--GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL  245 (579)
Q Consensus       169 iG~~ig~~l~~~l~~~~--~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (579)
                      +|.+++++++.++....  ++||..|.+.+++.++..++ +++.+++|+....+. .++   .   .....  ..     
T Consensus       169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~-~~~---~---~~~~~--~~-----  234 (467)
T PRK09556        169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGK-AEE---I---FGEPI--SE-----  234 (467)
T ss_pred             hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCC-hhh---c---ccCcc--ch-----
Confidence            99999999987766532  24999999888877766555 455566664211110 000   0   00000  00     


Q ss_pred             hhhhhhhHHhhccch-hhh-HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 008060          246 KESVDKEIEEEGSSE-KIN-LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG  323 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (579)
                          +++..+.++.. ... .++.+++|.+|...+.     .++..........|.|.|+++..+.+..++++......+
T Consensus       235 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~  305 (467)
T PRK09556        235 ----EDKETESTDMTKWQIFVEYVLKNPVIWLLCFA-----NIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEI  305 (467)
T ss_pred             ----hhhccccccCcHHHHHHHHHHcChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence                00000000000 111 1236777776643332     223333455677899999977655577777888888888


Q ss_pred             HHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccccc
Q 008060          324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKC  403 (579)
Q Consensus       324 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (579)
                      +.+++.++.|+++||++||+.+.....+..++..++..... .                                     
T Consensus       306 ~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~-~-------------------------------------  347 (467)
T PRK09556        306 GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHA-T-------------------------------------  347 (467)
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhc-C-------------------------------------
Confidence            89999999999999999998766554444333222222111 0                                     


Q ss_pred             ccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccc
Q 008060          404 LKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEI  483 (579)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (579)
                                                                       ..+...+..++++ .+..+..........|.
T Consensus       348 -------------------------------------------------~~~~~~~~~~~~G-~~~~~~~~~~~~~~~~~  377 (467)
T PRK09556        348 -------------------------------------------------SEYMYLASLFALG-FLVFGPQLLIGVAAVGF  377 (467)
T ss_pred             -------------------------------------------------cHHHHHHHHHHHH-HHHhhHHHHHHHHHHhh
Confidence                                                             0111112222222 12222222223456699


Q ss_pred             cccccchhhhHHHHHHHHH-HHHHHHHHHHHHHH------------hcccchhhHHHHHHHHHHHHHhhh
Q 008060          484 YPLRFRGVCGGIAATANWI-SNLIVAQSFLSLTQ------------AIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       484 ~p~~~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +|++.+|++.|+.++.+++ |++++|.+.|.+.|            ..||+..|.+.+++++++.+..++
T Consensus       378 ~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        378 VPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999997 77999999999999            578999999998888888776554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.1e-35  Score=315.98  Aligned_cols=402  Identities=16%  Similarity=0.180  Sum_probs=278.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh-hHHHH--HHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT-LLQES--IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~-~~~g~--l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      ++.+....++.+++++|...++...|.+.++++.+.++. .+.+.  +.++.++++.++++++|+++||+|||+++.+++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            346667788999999999999999999999987544332 11122  358888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhH--------HHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH
Q 008060          107 FLFFVGAVIMAAAPNPGA--------LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~--------ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~  178 (579)
                      ++++++++++++++|+++        ++++|+++|++.|+.++...++++|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        899999999999999999999999999999999999999988888888888666


Q ss_pred             HHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhh
Q 008060          179 LAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD  250 (579)
Q Consensus       179 ~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (579)
                      ..+..        ..+ ||+.|++.++++++..++...+||+|++...+++.++..+                       
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-----------------------  230 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-----------------------  230 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-----------------------
Confidence            54432        344 9999999877666555556678999886533221111000                       


Q ss_pred             hhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHH
Q 008060          251 KEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSI  330 (579)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (579)
                         +...+.++.++.+++++.  ++....... ..+.....++....|.|.++++..+.+.....+......++.+++.+
T Consensus       231 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~  304 (490)
T PRK10642        231 ---EGLQDGPKVSFKEIATKH--WRSLLTCIG-LVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQP  304 (490)
T ss_pred             ---ccccccccCCHHHHHHHh--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence               000001122345555531  222222221 22233455677778999999765444555566666777788899999


Q ss_pred             HHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCC
Q 008060          331 VSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPD  410 (579)
Q Consensus       331 ~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (579)
                      +.|+++||+|||+.+..+..+..++...+.......                                            
T Consensus       305 ~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------  340 (490)
T PRK10642        305 VMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSN--------------------------------------------  340 (490)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCC--------------------------------------------
Confidence            999999999999988777654433322222111100                                            


Q ss_pred             CCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccch
Q 008060          411 CGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRG  490 (579)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  490 (579)
                                                                ......+..++...+.+.+ ......+..|++|++.||
T Consensus       341 ------------------------------------------~~~~~~~~~~~~g~~~~~~-~g~~~~~~~~~~p~~~Rg  377 (490)
T PRK10642        341 ------------------------------------------VIGLIFAGLLMLAVILNCF-TGVMASTLPAMFPTHIRY  377 (490)
T ss_pred             ------------------------------------------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCccch
Confidence                                                      0111122222222222222 223346677899999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060          491 VCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      ++.|+.+..+.+++.++|.+.+.+.+..+ ++.++++..+.++++++.. +++||++++.
T Consensus       378 ~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~  436 (490)
T PRK10642        378 SALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCC
Confidence            99998766677888899999999988655 5656666666666666654 4568886543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.4e-35  Score=314.74  Aligned_cols=406  Identities=14%  Similarity=0.091  Sum_probs=290.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      +.++.+.....+..+..+++...++..+|.+.+++|.+..+.   |++.+.+.+++.+++++.|+++||+|||+++.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~   95 (434)
T PRK11663         19 YWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI---GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHH
Confidence            456667777778888888888899999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ++.+++.++.+++++++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.++++.+++++.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  175 (434)
T PRK11663         96 IATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG  175 (434)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh-H
Q 008060          187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN-L  264 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  264 (579)
                       ||+.|++.+++.++..+. .++++|+|++...+...+..++              .   .+. .++ .+.++.+..+ .
T Consensus       176 -w~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------------~---~~~-~~~-~~~~~~~~~~~~  235 (434)
T PRK11663        176 -WRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD--------------A---LEL-AQQ-QEGAGLSRKEIL  235 (434)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc--------------c---ccc-chh-ccccCCChhhhH
Confidence             999999988776655444 5567887653211100000000              0   000 000 0000000111 1


Q ss_pred             -HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 008060          265 -VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT--GR  341 (579)
Q Consensus       265 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~  341 (579)
                       ...++++.++...+.     .+........+..|.|.|+++..+.+...++.......++.++++++.|+++||+  ++
T Consensus       236 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~  310 (434)
T PRK11663        236 TKYVLLNPYIWLLSFS-----YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGN  310 (434)
T ss_pred             HHHHhcChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC
Confidence             124555655443222     2223334556677889999665555677778888888899999999999999998  33


Q ss_pred             chhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCC
Q 008060          342 KKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (579)
Q Consensus       342 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (579)
                      |+.. ........+....+..... .                                                      
T Consensus       311 r~~~~~~~~~~~~~~~~~~~~~~~-~------------------------------------------------------  335 (434)
T PRK11663        311 RGPMNLIFAAGILLSVGSLWLMPF-A------------------------------------------------------  335 (434)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHccc-c------------------------------------------------------
Confidence            3332 2222222222221111100 0                                                      


Q ss_pred             CCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHH
Q 008060          421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN  500 (579)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~  500 (579)
                                                       .........+..+++..+..........|.+|++.||+++|+.++.+
T Consensus       336 ---------------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  382 (434)
T PRK11663        336 ---------------------------------SYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFA  382 (434)
T ss_pred             ---------------------------------cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHH
Confidence                                             01111122222222222222223356689999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          501 WISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       501 ~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      ++|++++|.++|.+.|..|+...|.+.+++++++.+..+...++.+++
T Consensus       383 ~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        383 YLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            999999999999999999999999999999888877666555544433

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=8.8e-36  Score=323.00  Aligned_cols=394  Identities=23%  Similarity=0.351  Sum_probs=295.1

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l  131 (579)
                      +..|.+.+|+++++++....+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            56788999999996555556999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE  211 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe  211 (579)
                      .|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.    +||+.|++.+++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP----DWRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999987765    4999999999888887777788999


Q ss_pred             ChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHH
Q 008060          212 SPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVG  291 (579)
Q Consensus       212 sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (579)
                      +|+|+..+++.+++.+..++..+.+......+......++  +..++.++.+.++++++|.++...+......+. .   
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~---  339 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK--DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT-T---  339 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh--hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH-H---
Confidence            9999999999888887777655443322111111110001  011111234678899998887766654433221 1   


Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060          292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP  371 (579)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
                       ....+..+.+....+. +   ........++..+++.++.+++.||+|||+.+..+.++.+++.+++......      
T Consensus       340 -~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~------  408 (505)
T TIGR00898       340 -AFSYYGLVLDLGNLGG-N---IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD------  408 (505)
T ss_pred             -HHHHHHHhccccccCC-C---hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC------
Confidence             1111122233333333 2   2233445567788999999999999999999988888777776665543210      


Q ss_pred             ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060          372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS  451 (579)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (579)
                                                                                                      
T Consensus       409 --------------------------------------------------------------------------------  408 (505)
T TIGR00898       409 --------------------------------------------------------------------------------  408 (505)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060          452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS  531 (579)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~  531 (579)
                       ..+...... +...++..+..+..+.+.+|++|++.|++++|+.++.+.+|++++|.+.+ + +..+...++.+++++.
T Consensus       409 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~  484 (505)
T TIGR00898       409 -LYFLRTALA-VLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLA  484 (505)
T ss_pred             -chHHHHHHH-HHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHH
Confidence             012222222 22222222234556688899999999999999999999999999999998 4 4456677888888888


Q ss_pred             HHHHHHhhhhccCCCCCChH
Q 008060          532 VAALLFVLIFVPETKGLPIE  551 (579)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~  551 (579)
                      +++.++. +++|||++++.+
T Consensus       485 ~~~~~~~-~~lpet~~~~l~  503 (505)
T TIGR00898       485 LLAGILT-LFLPETKGVPLP  503 (505)
T ss_pred             HHHHHHH-HcCcCCCCCCCC
Confidence            8887765 468999988764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=9.1e-35  Score=292.66  Aligned_cols=378  Identities=21%  Similarity=0.203  Sum_probs=312.3

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      +..+..++.+.++.|..+........++|++.+|++.+..+.   |++.|+|.++.+++.++...++||+.||++++..+
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a---G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l   85 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA---GQLITAYALGVALGAPLLALLTGRLERRRLLLGLL   85 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH
Confidence            445667788889999999999999999999999999999999   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      .++.++.+++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+..|
T Consensus        86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060          187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (579)
                       ||+.|++.+.++++..+. +..+|  |+.                                     ..++++.+..+..
T Consensus       166 -WR~~F~~ia~l~ll~~~~~~~~lP--~~~-------------------------------------~~~~~~~~~~~~~  205 (394)
T COG2814         166 -WRATFLAIAVLALLALLLLWKLLP--PSE-------------------------------------ISGSLPGPLRTLL  205 (394)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCC--Ccc-------------------------------------CCCCCCcchhHHH
Confidence             999999999998888777 67778  210                                     0011222334577


Q ss_pred             HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhh
Q 008060          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLL  345 (579)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~  345 (579)
                      +.+|+|.++...+..++.     +.+.+...+|...++++..+.+.....+....++++.++|..++|++.|| +.|+.+
T Consensus       206 ~~l~~p~v~~~l~~t~l~-----~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l  279 (394)
T COG2814         206 RLLRRPGVLLGLLATFLF-----MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRAL  279 (394)
T ss_pred             HHhcCchHHHHHHHHHHH-----HcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHH
Confidence            889999998766655443     44667777777778887777788888999999999999999999999999 888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcc
Q 008060          346 VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGA  425 (579)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (579)
                      .....++++..+.+.+....                                                            
T Consensus       280 ~~~~~l~a~~~l~l~~~~~~------------------------------------------------------------  299 (394)
T COG2814         280 IAALLLLALALLALTFTGAS------------------------------------------------------------  299 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcch------------------------------------------------------------
Confidence            88878887777776665331                                                            


Q ss_pred             ccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHH
Q 008060          426 CLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNL  505 (579)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~  505 (579)
                                                  .+..+....+........ ........++ .-++.++.+.++.....++|..
T Consensus       300 ----------------------------~~~~~~~~~~wg~a~~~~-~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia  349 (394)
T COG2814         300 ----------------------------PALALALLFLWGFAFSPA-LQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA  349 (394)
T ss_pred             ----------------------------HHHHHHHHHHHHHHhhhh-hhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH
Confidence                                        222233333322222211 1122344444 2357789999999999999999


Q ss_pred             HHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          506 IVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       506 i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      +|..+.|.++|+.|+....++.+++.++++++.+...+
T Consensus       350 ~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         350 LGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888655433

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=2.8e-34  Score=304.40  Aligned_cols=377  Identities=22%  Similarity=0.230  Sum_probs=280.3

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      ..+++++.+..+.++.+.++++.....+..|.+.+++|.++.+.   +++.+++.++..+++++.|+++||+|||+++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         12 ITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG---AFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            34566777788889999999999999999999999999998888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      +.++.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+.++|.++++.+.+.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307         89 SIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+ ||+.|++..+..++........||++++...+.+            ...              ++.+...+......
T Consensus       169 ~~-w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------------~~~--------------~~~~~~~~~~~~~~  221 (426)
T PRK12307        169 YG-WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------------GKG--------------KHSQSAWSVFSLSM  221 (426)
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh------------ccc--------------cccccchhhhhHHH
Confidence            76 9999988654433333223334555432211000            000              00000000112345


Q ss_pred             HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                      +++++++.++...+....  .+..+...+.+..+.|.++++.+. +....+.......++.+++.++.|++.||++||+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~  298 (426)
T PRK12307        222 KGLFNRAQFPLTLCVFIV--LFSIFGANWPIFGLLPTYLAGEGF-DTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT  298 (426)
T ss_pred             HHHHhhchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            677787776544332221  122223333456678889888765 55566677777888899999999999999999998


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      +..+..+..+..+++..... .                                                          
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~-~----------------------------------------------------------  319 (426)
T PRK12307        299 FSIGLLMSFLFIFPLFRIPQ-D----------------------------------------------------------  319 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHcc-c----------------------------------------------------------
Confidence            88777666554443332211 0                                                          


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHH-hhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYII-FFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS  503 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g  503 (579)
                                                   .+. .+..+++.. ....+..+....++.|.+|++.||+++|+.+...+++
T Consensus       320 -----------------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~  369 (426)
T PRK12307        320 -----------------------------NYL-LLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATS  369 (426)
T ss_pred             -----------------------------cHH-HHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHH
Confidence                                         111 122222222 2222333444567789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchh
Q 008060          504 NLIVAQSFLSLTQAIGTSWT  523 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~~~  523 (579)
                      +.++|.+.|.+.+..|+...
T Consensus       370 ~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        370 GTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HHHHHHHHHHHHHcccHHHH
Confidence            99999999999999886543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.2e-34  Score=305.43  Aligned_cols=398  Identities=16%  Similarity=0.125  Sum_probs=283.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      +.+|+.+..+++.++++++++..++...|.+.+|+|.+..+.   |++.+++.+++++++++.|+++||+|||+++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~   80 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF---GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIM   80 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHH
Confidence            356888889999999999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc---
Q 008060          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR---  183 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~---  183 (579)
                      ++++++.+++++++|++.+++.|+++|++.+...+....++.|++|+++|+++++++..+.++|.++++.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  160 (412)
T TIGR02332        81 VLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG  160 (412)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998864   


Q ss_pred             ---CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060          184 ---APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS  259 (579)
Q Consensus       184 ---~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                         .. +||+.|++.++++++..++ ++++||+|+... .-..++.+...+..+.....      ..+. +.........
T Consensus       161 ~~~~~-gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~  231 (412)
T TIGR02332       161 LMALK-GWQWLFLLEGFPSVILGVMTWFWLDDSPDKAK-WLDEEDKKALKEMIDNDQLT------LEQP-EGAFAHAAMP  231 (412)
T ss_pred             CCCcc-chhHHHHHHHHHHHHHHHHHhhccCCCcccCC-CCCHHHHHHHHHHHHhcccc------cccc-cccccccccc
Confidence               23 4999999988887665554 567788874210 00011111111111000000      0000 0000000000


Q ss_pred             hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (579)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (579)
                      .+..+++++ ++.++.     .....++.....+.+.+|.|.++++.+ +.+...++.......++.+++.++.|+++||
T Consensus       232 ~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr  305 (412)
T TIGR02332       232 QRSMLREIF-TPAIML-----YTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR  305 (412)
T ss_pred             HHHHHHHhc-ChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc
Confidence            011223333 344432     223334445567778889999998743 3455677778888899999999999999999


Q ss_pred             cCCchhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060          339 TGRKKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (579)
Q Consensus       339 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (579)
                      ++||+.. .....+..++. ++.....  .                                                  
T Consensus       306 ~~~r~~~~~~~~~~~~~~~-~~~~~~~--~--------------------------------------------------  332 (412)
T TIGR02332       306 LKERKHHTALPYLFAAAGW-LLASATD--H--------------------------------------------------  332 (412)
T ss_pred             cCccHHHHHHHHHHHHHHH-HHHHhcC--C--------------------------------------------------
Confidence            9977753 33333333332 1111110  0                                                  


Q ss_pred             CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH
Q 008060          418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA  497 (579)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~  497 (579)
                                                          ....+..+.+...+. ....+..+....|.+|++.|++++|+.+
T Consensus       333 ------------------------------------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~a~g~~~  375 (412)
T TIGR02332       333 ------------------------------------NLIQLLGIIMASMGS-FSAMAIFWTTPDQSISLQARAIAIAVIN  375 (412)
T ss_pred             ------------------------------------HHHHHHHHHHHHHHh-hhhhhHHHhhcccccchHHHHHHHHHHH
Confidence                                                011111111111111 1112334456678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHH
Q 008060          498 TANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISV  532 (579)
Q Consensus       498 ~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~  532 (579)
                      +.+++|++++|.+.|.+.+..| |...+.+.+++.+
T Consensus       376 ~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~~  411 (412)
T TIGR02332       376 ATGNIGSALSPFLIGILKDATGSFNSGLWFVAALLV  411 (412)
T ss_pred             HhhhhhhhhhhhhcccccccCCCCchhHHHHHHHHh
Confidence            9999999999999999999875 8888877766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=7.7e-34  Score=297.49  Aligned_cols=374  Identities=18%  Similarity=0.134  Sum_probs=280.4

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~  107 (579)
                      ++|..+..+.+..+..........+++|.+.+++|.+..+.   |++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV---GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            34555555556555554555566678899999999999888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (579)
Q Consensus       108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~  187 (579)
                      +.+++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|++++.+.+..+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-  161 (390)
T PRK03545         83 LFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-  161 (390)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-
Confidence            9999999999999999999999999999998899999999999999999999999999999999999999999888777 


Q ss_pred             chhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060          188 WRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK  266 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      ||+.|++.++++++..+. +..+||.|+    + +                                    +...++..+
T Consensus       162 w~~~f~~~~~~~~l~~~~~~~~~~~~~~----~-~------------------------------------~~~~~~~~~  200 (390)
T PRK03545        162 WRTTFLAIGGGALITLLLLIKLLPLLPS----E-H------------------------------------SGSLKSLPL  200 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCC----C-C------------------------------------cchHHHHHH
Confidence            999999999877766555 444565432    0 0                                    000123456


Q ss_pred             hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060          267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (579)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (579)
                      .+|+|.++.........     .........+.+.++++..+.+....+.......++.++++++.++++||++||... 
T Consensus       201 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-  274 (390)
T PRK03545        201 LFRRPALVSLYLLTVVV-----VTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-  274 (390)
T ss_pred             HHhCcHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-
Confidence            77777765433332221     112233345666677665555666777777888888999999999999999987654 


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      .+..+..++..++....+                                                              
T Consensus       275 ~~~~~~~~~~~~l~~~~~--------------------------------------------------------------  292 (390)
T PRK03545        275 IAIALLLVCLLLLLPAAN--------------------------------------------------------------  292 (390)
T ss_pred             HHHHHHHHHHHHHHHHhc--------------------------------------------------------------
Confidence            444434333333322111                                                              


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI  506 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i  506 (579)
                                                ..+...+...+.+.. .....+.......+..| +.|+.++|+.+...++|..+
T Consensus       293 --------------------------~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~  344 (390)
T PRK03545        293 --------------------------SEWHLSVLSIFWGIA-IMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGA  344 (390)
T ss_pred             --------------------------hHHHHHHHHHHHHHH-HhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHH
Confidence                                      011222222222222 22333334456667766 57899999999999999999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060          507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV  542 (579)
Q Consensus       507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (579)
                      ||.+.|.+.|..|++..|.+.+++.++++++.+...
T Consensus       345 G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        345 GALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999888876554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=2.1e-33  Score=298.04  Aligned_cols=384  Identities=20%  Similarity=0.200  Sum_probs=264.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcc---cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK---SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL  103 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~---~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~  103 (579)
                      ++++..+...+++.+.+++|...++...|.+.++++   .+..+..+.+.+.+..+++..++++++|+++||+|||+++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~   97 (432)
T PRK10406         18 RRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            445667777788899999999999999999999985   33333322244455566666699999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060          104 VADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (579)
Q Consensus       104 ~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~  175 (579)
                      .++++++++++++++++++.        .+++.|+++|++.|..++...++++|++|+++|+++.++...+...|..+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~  177 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLAL  177 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998874        5899999999999999999999999999999999999999888888888888


Q ss_pred             HHHHHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhh
Q 008060          176 LINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE  247 (579)
Q Consensus       176 ~l~~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (579)
                      .+...+..        ..+ ||+.|++.++++++...+...+||+|++..      +                       
T Consensus       178 ~~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~-----------------------  227 (432)
T PRK10406        178 LVVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R-----------------------  227 (432)
T ss_pred             HHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h-----------------------
Confidence            77655432        344 999999988877766555556677754210      0                       


Q ss_pred             hhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 008060          248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA  327 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (579)
                             +.  .+..++++++++++.+...+..    .+.....++....|.|.++++..+.+....+.......++.++
T Consensus       228 -------~~--~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i  294 (432)
T PRK10406        228 -------AL--KEAGSLKGLWRNRRAFIMVLGF----TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFML  294 (432)
T ss_pred             -------hh--cccccHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence                   00  0012456677766554322211    1222334566778899998765444555666666666667788


Q ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCC
Q 008060          328 GSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKAS  407 (579)
Q Consensus       328 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (579)
                      +..+.|+++||++||+.+..+..+..+....+........                                        
T Consensus       295 ~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  334 (432)
T PRK10406        295 IQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVS----------------------------------------  334 (432)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCC----------------------------------------
Confidence            8889999999999999876655543333222221111000                                        


Q ss_pred             CCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc
Q 008060          408 SPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR  487 (579)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  487 (579)
                                                                   ..+..+..+.+.....+. ..+..+.+.+|.+|++
T Consensus       335 ---------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~  368 (432)
T PRK10406        335 ---------------------------------------------SPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQ  368 (432)
T ss_pred             ---------------------------------------------cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
Confidence                                                         011111111111111111 1234557789999999


Q ss_pred             cchhhhHHHHHHHHH-HHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060          488 FRGVCGGIAATANWI-SNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       488 ~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      .|++++|+.+..+++ .+...|.+.+.+ +..| +...+++.+++.+++.+..++
T Consensus       369 ~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        369 VRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             ccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999887665 344577777754 5556 545566666666766666544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.5e-33  Score=296.18  Aligned_cols=393  Identities=17%  Similarity=0.170  Sum_probs=283.0

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      ..+++|+.+..++++.+.++++....+++.|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA---ASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45678888999999999999999999999999999999998888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      +.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988765


Q ss_pred             cC-cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          185 PG-TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       185 ~~-~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      .+ +||+.|++.+++.++..+....+||++++...+.+.++..+..++..+..             ...+ ...+.....
T Consensus       163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~  228 (405)
T TIGR00891       163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGE-------------HRIA-NIVMTLAAA  228 (405)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccc-------------hhhh-hhhhhhhHH
Confidence            43 49999998777666665556677888654332221111111111000000             0000 000000001


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      .++.  .++.+..... .................+.|.++.+..+.+..+.+.+.....++.+++.++.+++.||++||+
T Consensus       229 ~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~  305 (405)
T TIGR00891       229 MVQS--AGKRWPTFVY-LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK  305 (405)
T ss_pred             hhhh--hhhhhHHHHH-HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence            1111  1111111111 111111222223445567788887655556777788888888999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP  423 (579)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (579)
                      .+..+.....+....+... . .                                                         
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~-~---------------------------------------------------------  326 (405)
T TIGR00891       306 AYVCSLLAGQLLIIPVFAI-G-A---------------------------------------------------------  326 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHh-C-C---------------------------------------------------------
Confidence            8877765543322222211 1 0                                                         


Q ss_pred             ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060          424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS  503 (579)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g  503 (579)
                                                   ..+...+.. ....+...+..+....+..|.+|++.||+++|+.+...++|
T Consensus       327 -----------------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  376 (405)
T TIGR00891       327 -----------------------------NVAVLGLGL-FFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLG  376 (405)
T ss_pred             -----------------------------chHHHHHHH-HHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHH
Confidence                                         011112222 22223333344555678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-cchhhHH
Q 008060          504 NLIVAQSFLSLTQAIG-TSWTFLI  526 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g-~~~~~~~  526 (579)
                      +.++|.+.|.+.|..| |...+..
T Consensus       377 ~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       377 GALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999998 7655544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.4e-33  Score=297.18  Aligned_cols=385  Identities=21%  Similarity=0.227  Sum_probs=288.4

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      ..+++|.++..+++..+.++++....+...|.+.+++|.++.+.   +++.+.+.++..+++++.|+++||+|||+++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551          9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM---GWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            45588889999999999999999999999999999999988888   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      +.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  165 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD  165 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             cCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      .+ ||+.|++.+++.++..+. ..++||+|++...+.+.++.                                   +..
T Consensus       166 ~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------------------------~~~  209 (406)
T PRK11551        166 AA-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR-----------------------------------APV  209 (406)
T ss_pred             cC-HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh-----------------------------------hhh
Confidence            76 999999888765555544 56678887543221110000                                   000


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      ..+.++.+..+....  .....+......+....|.|.++++.+. +....+.......++.+++.++.|+++||++||+
T Consensus       210 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~  286 (406)
T PRK11551        210 LRALFGEGRATATLL--LWISYFFTLIVLYFLLNWLPSLLVGQGL-SRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR  286 (406)
T ss_pred             HHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            111111111111111  1111222233445666788999888655 5566677778888889999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP  423 (579)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (579)
                      .+..+.....++.+++....+                                                           
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  307 (406)
T PRK11551        287 VVLLIYAGILASLAALAAAPS-----------------------------------------------------------  307 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc-----------------------------------------------------------
Confidence            887766555555443332110                                                           


Q ss_pred             ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060          424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS  503 (579)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g  503 (579)
                                                    .+. +....++..+...+..+...++..|.+|++.||++.|+.+....+|
T Consensus       308 ------------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  356 (406)
T PRK11551        308 ------------------------------FAG-MLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLG  356 (406)
T ss_pred             ------------------------------HHH-HHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHH
Confidence                                          111 2222222222222334556678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhh
Q 008060          504 NLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      ++++|.+.|.+.+..+ +...+...+...+++.++.+..
T Consensus       357 ~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        357 SMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998755 4445555555555555554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=2.6e-40  Score=353.34  Aligned_cols=431  Identities=37%  Similarity=0.648  Sum_probs=334.1

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhh--hhcccccc------hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALLYIR--DDFKSVDR------KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp~i~--~~~~~s~~------~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l  108 (579)
                      .++.+..+++...++...+...  .++..+..      +..+.+++.+...+|..+|++++|.++||+|||+.++++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            4555778888888777766554  22222221      123458999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc---hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          109 FFVGAVIMAAAP---NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       109 ~~i~~ll~~~a~---~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      ..++.++.++++   |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|..++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   99999999999999999999999999999999999999999999999999999888876553322


Q ss_pred             --CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          186 --GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       186 --~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                        ..||+.+++.++++++..+..+++||||+|+.++++.+++++.+++.++.+..+++.++..+..++.     +..+..
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  240 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKES-----QESKAS  240 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccc-----ccccee
Confidence              1499999999999888877788899999999999999999988888655433333322222211111     111156


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      +.++++++..++..+..+.+..+.++.+.....+|.|.+++..+..+.   ........+..+++.+++.+++||+|||+
T Consensus       241 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  241 WRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS---FLATLILGLVNFLGTLLAIFLIDRFGRRK  317 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence            777788766556666666666666677777777888888877766554   33334455667788888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHH-HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060          344 LLVISLSGVILSLGVLS-AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF  422 (579)
Q Consensus       344 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (579)
                      +++.+..+.+++.+.+. ........                                                      
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  343 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSS------------------------------------------------------  343 (451)
T ss_pred             cccccccccccccccccccccccccc------------------------------------------------------
Confidence            99988888877776664 11110000                                                      


Q ss_pred             CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060          423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI  502 (579)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~  502 (579)
                                                 ++...+..++..+++...+..+.++..+.+.+|++|++.|+++.|+....+++
T Consensus       344 ---------------------------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i  396 (451)
T PF00083_consen  344 ---------------------------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRI  396 (451)
T ss_pred             ---------------------------ccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence                                       00012233455555666777788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHHH
Q 008060          503 SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKM  556 (579)
Q Consensus       503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (579)
                      +++++|.+...+.+..+....+.++++++++..++.++++||||+++.||++++
T Consensus       397 ~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  397 GGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            999999999988888886678888899888888888899999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1e-32  Score=266.22  Aligned_cols=434  Identities=21%  Similarity=0.254  Sum_probs=328.9

Q ss_pred             HHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060           17 RECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (579)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~   96 (579)
                      +|.+......+.+|...+....+++.+.+.....+.+.|.+.+.++.+..+.   .++......|..+++..+|.++|++
T Consensus        64 ~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~---~llt~~v~~gmllga~~w~l~~d~~  140 (528)
T KOG0253|consen   64 DEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA---PLLTLSVFLGMLVGAMVWGLSADTI  140 (528)
T ss_pred             hhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh---hHHHHHHHhhhhhhhhhhheehhhh
Confidence            3444455567889999999999999998888888999999999999887777   9999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060           97 GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL  176 (579)
Q Consensus        97 Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~  176 (579)
                      |||+.+.+.....++...+.+.++|+..+.++|.+.|+|.|+ .|...++-.|..|..+|...+-+. ..+.+|.++...
T Consensus       141 grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~  218 (528)
T KOG0253|consen  141 GRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEAL  218 (528)
T ss_pred             hcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 888888899999999998887777 899999999999


Q ss_pred             HHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh---------h
Q 008060          177 INLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK---------E  247 (579)
Q Consensus       177 l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  247 (579)
                      ++.......| |||.....+.+..+.....+++||+||++..+++.+++.+.++++...|..+.......         +
T Consensus       219 law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e  297 (528)
T KOG0253|consen  219 LAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE  297 (528)
T ss_pred             HHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence            9988888887 99999988888888888889999999999999999999998888876554332111100         0


Q ss_pred             hh--hhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------------
Q 008060          248 SV--DKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG------------------  307 (579)
Q Consensus       248 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  307 (579)
                      ..  ++.+....+....+...++ .|.+++..+.....++. +...++....+....++...                  
T Consensus       298 ~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~iwfg-nafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~  375 (528)
T KOG0253|consen  298 ESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRIWFG-NAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRAN  375 (528)
T ss_pred             hhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhc
Confidence            00  0001111122223344444 45555555544433332 22223333322222222111                  


Q ss_pred             -CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCC
Q 008060          308 -FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTC  386 (579)
Q Consensus       308 -~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (579)
                       -.+......-........++|.++.+.++||+|||+.+...+++..++.+++.......                    
T Consensus       376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn--------------------  435 (528)
T KOG0253|consen  376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN--------------------  435 (528)
T ss_pred             CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--------------------
Confidence             01223334444566777999999999999999999999999888887777665543211                    


Q ss_pred             CCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHH
Q 008060          387 PDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYII  466 (579)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (579)
                                                                                            ....+.+..-
T Consensus       436 ----------------------------------------------------------------------~~tvllf~ar  445 (528)
T KOG0253|consen  436 ----------------------------------------------------------------------AYTVLLFTAR  445 (528)
T ss_pred             ----------------------------------------------------------------------hhHHHHHHHH
Confidence                                                                                  1233333344


Q ss_pred             hhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          467 FFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .|.-+.....+.|..|++|+..|+++.|.+...+.+|+++.|++.  +........+..+++++++++++.+.++.-|||
T Consensus       446 afisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtk  523 (528)
T KOG0253|consen  446 AFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETK  523 (528)
T ss_pred             HHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccC
Confidence            444555677889999999999999999999999999999999888  444455667888899999999998888888999


Q ss_pred             CCCh
Q 008060          547 GLPI  550 (579)
Q Consensus       547 ~~~~  550 (579)
                      +|..
T Consensus       524 GR~l  527 (528)
T KOG0253|consen  524 GRSL  527 (528)
T ss_pred             CCCC
Confidence            9863

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=6.1e-33  Score=290.76  Aligned_cols=379  Identities=14%  Similarity=0.101  Sum_probs=281.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~  107 (579)
                      ..|.....++++.+.... ...+++.+|.+++|+|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~-~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~   82 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPL-LTSVGPLLPQLRQASGMSFSVA---ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLL   82 (393)
T ss_pred             hHHHHHHHHHHHHHcchh-hhccchhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHH
Confidence            345555555555444333 3667899999999999998888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (579)
Q Consensus       108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~  187 (579)
                      +++++.+++++++|++.+++.|+++|++.+...+....++.+++| ++|+++++++..+...|..+++.+++++.++..+
T Consensus        83 l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~  161 (393)
T PRK09705         83 LIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET  161 (393)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999997 7799999999999999999999999998887645


Q ss_pred             chhHHHHhhHHHHHHHHHHHhcc-CChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060          188 WRWMLGVAGIPALLQFILMLLLP-ESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK  266 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~~~~lp-esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      ||+.+.+.++..++..+.++... +.|+    +   +                               +++   +....+
T Consensus       162 w~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~-------------------------------~~~---~~~~~~  200 (393)
T PRK09705        162 WYQTLAWWALPAVVALFAWWWQSAREVA----S---S-------------------------------HKT---TTTPVR  200 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc----c---c-------------------------------cCC---CcCCcc
Confidence            99988776665544433333321 1111    0   0                               000   011223


Q ss_pred             hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060          267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (579)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (579)
                      .+++++.+...+     ..+....++.....|.|.++++.+. +...++....+..++.++++++.+++.||++||+.+.
T Consensus       201 ~l~~~~~~~l~~-----~~~~~~~~~~~~~~~lp~~l~~~g~-s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~  274 (393)
T PRK09705        201 VVFTPRAWTLGV-----YFGLINGGYASLIAWLPAFYIEIGA-SAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLM  274 (393)
T ss_pred             cccCHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCC-ChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence            445555443222     1222334566777889999988544 6777788888899999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      .+..+..++..++..... .                                                            
T Consensus       275 ~~~~l~~~~~~~~~~~~~-~------------------------------------------------------------  293 (393)
T PRK09705        275 LALVLQLVGFCGFIWLPL-Q------------------------------------------------------------  293 (393)
T ss_pred             HHHHHHHHHHHHHHHccc-h------------------------------------------------------------
Confidence            877766666554432211 0                                                            


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccc-ccccchhhhHHHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIY-PLRFRGVCGGIAATANWISNL  505 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~gi~~~~~~~g~~  505 (579)
                                                 ..  .....+.+.+.+ +..+.......+.. |++.+|+.+|+.+..+++++.
T Consensus       294 ---------------------------~~--~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  343 (393)
T PRK09705        294 ---------------------------LP--VLWAMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG  343 (393)
T ss_pred             ---------------------------HH--HHHHHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence                                       00  111122222222 22333334445555 467899999999999999999


Q ss_pred             HHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060          506 IVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       506 i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      ++|.+.|++.|..| +...|.+.++++++..++.+.+.||++++.
T Consensus       344 ~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        344 LAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            99999999999987 777788888888888777778888887764

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.1e-32  Score=294.24  Aligned_cols=400  Identities=13%  Similarity=0.080  Sum_probs=271.7

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++++|.++..+++.....+.++..++...|.+.++ |.+..+.   +++.+++.+++.++++++|+++||+|||++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~---g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~   99 (452)
T PRK11273         24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   99 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH---HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence            34566666767777777788877788889999888 9988888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH-HHHHHHHH
Q 008060          106 DFLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLA  180 (579)
Q Consensus       106 ~~l~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~-ig~~l~~~  180 (579)
                      .++.+++.++++++    .+++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..
T Consensus       100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~  179 (452)
T PRK11273        100 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG  179 (452)
T ss_pred             HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999988875    37888999999999999988888888899999999999999999999999874 45554433


Q ss_pred             hccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060          181 FTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS  259 (579)
Q Consensus       181 l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                      +.... +||+.|++.+++.++..++ .+++||+|+....+. .++.+.   +.             .+..+. +++++.+
T Consensus       180 ~~~~~-gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~---~~-------------~~~~~~-~~~~~~~  240 (452)
T PRK11273        180 MAWFN-DWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN---DY-------------PDDYNE-KHEQELT  240 (452)
T ss_pred             HHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh---cc-------------cccccc-ccCCCcc
Confidence            33333 5999999988776665544 677788875321111 110000   00             000000 0000000


Q ss_pred             hhhh-HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060          260 EKIN-LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (579)
Q Consensus       260 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (579)
                      .+.. ....+|++.+|...+...+.     ....+....|.|.|+++..+.+...++....+..++.+++.++.|+++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr  315 (452)
T PRK11273        241 AKQIFMQYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK  315 (452)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111 12356666665543332222     22345667789999988655456667777778888889999999999999


Q ss_pred             c--CCchhhH-HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCccc
Q 008060          339 T--GRKKLLV-ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCA  415 (579)
Q Consensus       339 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (579)
                      +  +||+... ....+..++.+++... . ..                                                
T Consensus       316 ~~~~r~~~~~~~~~~l~~~~~~~~~~~-~-~~------------------------------------------------  345 (452)
T PRK11273        316 VFRGNRGATGVFFMTLVTIATIVYWLN-P-AG------------------------------------------------  345 (452)
T ss_pred             HccCCcchHHHHHHHHHHHHHHHHHHh-c-cc------------------------------------------------
Confidence            8  4444322 2222222222222111 1 00                                                


Q ss_pred             CCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH
Q 008060          416 SHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI  495 (579)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi  495 (579)
                                                           ..+...+.+..... ...+.......+..|.+|++.||+++|+
T Consensus       346 -------------------------------------~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~  387 (452)
T PRK11273        346 -------------------------------------NPTVDMACMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGF  387 (452)
T ss_pred             -------------------------------------ChHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChhhhhhHHHH
Confidence                                                 01111121111111 1111112223456799999999999999


Q ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          496 AATANWISNLI-VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       496 ~~~~~~~g~~i-~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      .++..++|+.+ +|.+.|.+.|..|++..|++.+++++++.++...+
T Consensus       388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999998765 79999999999999999999998888887765543

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=2.9e-32  Score=289.61  Aligned_cols=391  Identities=14%  Similarity=0.144  Sum_probs=270.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhc--ccccchhhHHHHHH-----HHHHHHHHHHHHhHhhhhccccc
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLY-IRDDF--KSVDRKTLLQESIV-----SMAVAGAIIGAAIGGWMNDRFGR   98 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~--~~s~~~~~~~g~l~-----s~~~lg~~i~~l~~G~lsDr~Gr   98 (579)
                      .++++.+....++.+.+++|...++.+.|. +.+++  +.++..    +++.     ++.+++..+++++.|+++||+||
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr   93 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM----GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR   93 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence            344567778888999999999999988875 55555  555542    4332     45667788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHH
Q 008060           99 RTSILVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSG  170 (579)
Q Consensus        99 r~vl~~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG  170 (579)
                      |++++++.++++++++++++++++.        .++++|+++|++.|..++....++.|++|+++|++..+....+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987        58899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc--------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060          171 QFLSYLINLAFTR--------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEI  242 (579)
Q Consensus       171 ~~ig~~l~~~l~~--------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (579)
                      ..++..+...+..        ..+ ||+.|++.+++.++...+....||+|++...+++.++                  
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------  234 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------  234 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------------
Confidence            9988877766542        344 9999998887765554445567888765322111000                  


Q ss_pred             HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 008060          243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS  322 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (579)
                                  .+  .+......++++++.+...+..    .+......+....|.|.|+++..+.+...........+
T Consensus       235 ------------~~--~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g  296 (438)
T PRK09952        235 ------------AK--KRIPVIEALLRHPGAFLKIIAL----RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVG  296 (438)
T ss_pred             ------------cc--ccCCHHHHHHHchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence                        00  0001112244555444322211    12233345566778888887654444444444444556


Q ss_pred             HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060          323 GLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK  402 (579)
Q Consensus       323 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (579)
                      +..+++.++.|+++||++||+.+..+.++..++...+........                                   
T Consensus       297 ~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  341 (438)
T PRK09952        297 GLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQS-----------------------------------  341 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCC-----------------------------------
Confidence            667888899999999999999888776655544433322211000                                   


Q ss_pred             cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060          403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE  482 (579)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (579)
                                                                        ..+..+....+.....+ ...+..+++..|
T Consensus       342 --------------------------------------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~e  370 (438)
T PRK09952        342 --------------------------------------------------IFWIVFFSIMLANIAHD-MVVCVQQPMFTE  370 (438)
T ss_pred             --------------------------------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                                                              01111112222222221 223455688899


Q ss_pred             ccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          483 IYPLRFRGVCGGIAATAN-WISNLIVAQSFLSLTQAI--GTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       483 ~~p~~~~g~~~gi~~~~~-~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      .+|++.|+++.|+.+..+ .+++.++|.+.+.+.+..  +|...+.+.+++++++.+..+ ..+|+
T Consensus       371 ~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~  435 (438)
T PRK09952        371 MFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL-LMKDN  435 (438)
T ss_pred             HCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence            999999999999976654 489999999999998854  367777878888887777654 45654

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.7e-32  Score=296.61  Aligned_cols=415  Identities=17%  Similarity=0.164  Sum_probs=282.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      +++|+.+..++++.+.+.++....++.+|.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||++++++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   92 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA---ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISI   92 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            456778888889999999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ++.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  172 (496)
T PRK03893         93 VLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG  172 (496)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHH-Hhhh--hhhhhHHhhccchhh-
Q 008060          187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIR-DLKE--SVDKEIEEEGSSEKI-  262 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~-  262 (579)
                       ||+.|++.++..++..+....+||++++...+++.++.++..+.....+....... ....  ............... 
T Consensus       173 -w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (496)
T PRK03893        173 -WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIV  251 (496)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence             99999876555444444455567775543222111110111110000000000000 0000  000000000000000 


Q ss_pred             ---------hHH-HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008060          263 ---------NLV-KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVS  332 (579)
Q Consensus       263 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (579)
                               .+. ...+.+..+...........+..+...+....+.|.|+++..+.+....+.+.....++.+++.++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~  331 (496)
T PRK03893        252 AVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVG  331 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000 0000000000111111111111111122355678999975544567778888888899999999999


Q ss_pred             HHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCC
Q 008060          333 IYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG  412 (579)
Q Consensus       333 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (579)
                      |+++||++||+++..+..+..+..+++.....                                                
T Consensus       332 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  363 (496)
T PRK03893        332 GFLGDWLGTRKAYVCSLLISQLLIIPVFAIGG------------------------------------------------  363 (496)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHhhccc------------------------------------------------
Confidence            99999999999887766555544433222110                                                


Q ss_pred             cccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhh
Q 008060          413 FCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVC  492 (579)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  492 (579)
                                                              ..+.......+...+.+.+..+....+..|.+|++.||++
T Consensus       364 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  403 (496)
T PRK03893        364 ----------------------------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG  403 (496)
T ss_pred             ----------------------------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence                                                    0111122222222233334445555778899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060          493 GGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA  533 (579)
Q Consensus       493 ~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~  533 (579)
                      +|+.+....+|+.++|.+.|.+.+..|+...+...++...+
T Consensus       404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999988777665544433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=2.9e-32  Score=294.08  Aligned_cols=392  Identities=13%  Similarity=0.026  Sum_probs=287.7

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~  107 (579)
                      ++|..+..++++.++..+|.++.+..+|.+.+++|.+..+.   +|+.+.|.+++.++++++|+++||+|||++++.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~---~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~   79 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL---LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGT   79 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            35778899999999999999999999999999999988888   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      +++++++++++++|++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+||.+++++.+..+
T Consensus        80 ~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g  159 (495)
T PRK14995         80 LFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY  159 (495)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999999999999999888888887776 67899999999999999999999999999999887


Q ss_pred             cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHH------------HHhhcCCCchhhh-HH----Hhhhh
Q 008060          187 TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAI------------LRKVYPAHEVETE-IR----DLKES  248 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~----~~~~~  248 (579)
                       |||.|++...++++..++ .+++||.|+..  +.+.+.....            ++........... ..    .....
T Consensus       160 -wr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  236 (495)
T PRK14995        160 -WGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLL  236 (495)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHH
Confidence             999999988776666555 56677765311  1111111100            0000000000000 00    00000


Q ss_pred             hhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 008060          249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG  328 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (579)
                      ......+.+..++.-..+++|+|.++...+..+     +.........++.|.|++...+.+...+++...+..++..++
T Consensus       237 ~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~  311 (495)
T PRK14995        237 GLFIRTQLAASRPMIDMRLFTHRIILSGVVMAM-----TAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFS  311 (495)
T ss_pred             HHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence            000001111222223356788877654333322     223345566678899999887778899999999999999999


Q ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCC
Q 008060          329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASS  408 (579)
Q Consensus       329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (579)
                      .++.|++.||+|+|+.+..+..+..++..++.......                                          
T Consensus       312 ~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~------------------------------------------  349 (495)
T PRK14995        312 GPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST------------------------------------------  349 (495)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------------
Confidence            99999999999999988888877777766554432100                                          


Q ss_pred             CCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc
Q 008060          409 PDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF  488 (579)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  488 (579)
                                                                  ..+......++.+.+.+.. .+.......+..|++.
T Consensus       350 --------------------------------------------~~~~~~~~~~l~G~g~g~~-~~~~~~~~~~~~~~~~  384 (495)
T PRK14995        350 --------------------------------------------QQWQAWGLMALLGFSAASA-LLASTSAIMAAAPPEK  384 (495)
T ss_pred             --------------------------------------------chHHHHHHHHHHHHhHHHH-HHHHHHHHHhcCCHHh
Confidence                                                        0122222333333333222 2334456667889999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          489 RGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                      ++.+.++.++...+|+.+|+.+.|.+.+.
T Consensus       385 ~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        385 AAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998764

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=9.2e-33  Score=285.62  Aligned_cols=355  Identities=12%  Similarity=0.027  Sum_probs=252.8

Q ss_pred             hhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh
Q 008060           43 FGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP  122 (579)
Q Consensus        43 ~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~  122 (579)
                      +......+++.+|.+.+|+|.+..+.   |++.+.+.+++.+++++.|+++||+|||++++.++.....+.+.....+++
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~~---g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~   79 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEEL---GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNY   79 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccH
Confidence            34456678899999999999998888   999999999999999999999999999998766655555544333334799


Q ss_pred             hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHH
Q 008060          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQ  202 (579)
Q Consensus       123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~  202 (579)
                      +.+++.|+++|++.+. .+.....++|++|+++|++++++...+..+|.++++++++++.+..+ ||+.|++.++++++.
T Consensus        80 ~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~  157 (368)
T TIGR00903        80 EWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHH
Confidence            9999999999999986 55666667999999999999999999999999999999999988777 999999988877766


Q ss_pred             HHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHH
Q 008060          203 FIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGV  281 (579)
Q Consensus       203 ~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (579)
                      .++ ++++||+|++..   +..                          +.+      +...++++++++|.+|...+.  
T Consensus       158 ~~~~~~~lp~~p~~~~---~~~--------------------------~~~------~~~~~~~~ll~~~~~~~~~~~--  200 (368)
T TIGR00903       158 IILVLAALPALPFQAA---EGF--------------------------GFK------DAVKEFGALAGRKDLWIIGAI--  200 (368)
T ss_pred             HHHHHHHcCCCCCCCC---CCc--------------------------chH------HHHHHHHHHHcChhHHHHHHH--
Confidence            555 667899875310   000                          000      001235678888887654433  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---hhhHH-HHHHHHHHHH
Q 008060          282 GLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK---KLLVI-SLSGVILSLG  357 (579)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~~-~~~~~~~~~~  357 (579)
                         .++....++.+..|+|.|+++.+. +.. .+.......+.+.++   .++++||..||   +.... ...+.++...
T Consensus       201 ---~~~~~~~~~~~~~wlp~~L~~~g~-s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~  272 (368)
T TIGR00903       201 ---LGFGVALFDNLAIWLEAALRPAGL-EDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFL  272 (368)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHCCC-ChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence               333444567788899999988665 443 444444444444444   57788877543   33222 2222222222


Q ss_pred             HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060          358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC  437 (579)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (579)
                      .+....+                                                                         
T Consensus       273 ~~~~~~~-------------------------------------------------------------------------  279 (368)
T TIGR00903       273 ALAFELN-------------------------------------------------------------------------  279 (368)
T ss_pred             HHHHccc-------------------------------------------------------------------------
Confidence            2211100                                                                         


Q ss_pred             ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                                      .+. .+.......++..+..+..+++.+|.+|++.||+++|+.+..+++++.++|.+.+.+.. 
T Consensus       280 ----------------~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-  341 (368)
T TIGR00903       280 ----------------RLA-LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-  341 (368)
T ss_pred             ----------------cHH-HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-
Confidence                            111 12222222233333334566889999999999999999999999999999999988774 


Q ss_pred             cccchhhHHHHHHHHHHHHHhh
Q 008060          518 IGTSWTFLIFGVISVAALLFVL  539 (579)
Q Consensus       518 ~g~~~~~~~~~~~~~~~~~~~~  539 (579)
                       |....|.++++..+++.+..+
T Consensus       342 -~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       342 -SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             -CHHHHHHHHHHHHHHHHHHHH
Confidence             777788888888888877754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=6.3e-32  Score=286.95  Aligned_cols=364  Identities=18%  Similarity=0.182  Sum_probs=247.2

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHH-----HHHHHHHHHHhHhhhhccccchHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSM-----AVAGAIIGAAIGGWMNDRFGRRTSI  102 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~-----~~lg~~i~~l~~G~lsDr~Grr~vl  102 (579)
                      .|++....++++.+.+++|+..++...|.+.++++.++.+..  .+..+.     ..++..+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l   89 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL   89 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH
Confidence            455578888999999999999999999999999998776651  222222     2333457899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHH
Q 008060          103 LVADFLFFVGAVIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLS  174 (579)
Q Consensus       103 ~~~~~l~~i~~ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig  174 (579)
                      +.+.++++++.++++++++++        .+++.|+++|++.+...+....+++|++|+++|++++++...+..+|..++
T Consensus        90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g  169 (434)
T PRK15075         90 IVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFA  169 (434)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        468999999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHhc--------cCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh
Q 008060          175 YLINLAFT--------RAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK  246 (579)
Q Consensus       175 ~~l~~~l~--------~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (579)
                      +.+++.+.        +..+ ||+.|++..+...+........||++++..+                            
T Consensus       170 ~~~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~----------------------------  220 (434)
T PRK15075        170 ALLGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLAR----------------------------  220 (434)
T ss_pred             HHHHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHh----------------------------
Confidence            88777653        3445 9999987554322222212223333211000                            


Q ss_pred             hhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Q 008060          247 ESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNA  326 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (579)
                              +++.+.+...++..+++..+   +... ...+.+...++....|.|.|+++..+.+..+.++......++++
T Consensus       221 --------~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~  288 (434)
T PRK15075        221 --------KHRPSMREIFRSLAANWRIV---LAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNF  288 (434)
T ss_pred             --------hhccccccHHHHHHHhHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                    00000011112222322221   1111 22223344567788889999987544466667777788888899


Q ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH-HHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccccccc
Q 008060          327 AGSIVSIYFIDRTGRKKLLVISLSGVILSLGV-LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLK  405 (579)
Q Consensus       327 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (579)
                      ++.++.|+++||++||+.+..+..+..+.... +..... ..                                      
T Consensus       289 ~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------------------  329 (434)
T PRK15075        289 IWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA-AP--------------------------------------  329 (434)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-CC--------------------------------------
Confidence            99999999999999999877655443322211 111111 00                                      


Q ss_pred             CCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc
Q 008060          406 ASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP  485 (579)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  485 (579)
                                                                     ..........+...+++ ...+..+.+..|.+|
T Consensus       330 -----------------------------------------------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~e~~p  361 (434)
T PRK15075        330 -----------------------------------------------SFARMLAVELWLSFLYG-SYNGAMVVALTEVMP  361 (434)
T ss_pred             -----------------------------------------------chHHHHHHHHHHHHHHH-HHHhhHHHHHHHHCC
Confidence                                                           00011111111222222 223344567899999


Q ss_pred             cccchhhhHHHHHHHHH-HHHHHHHHHHHHHHhcccc
Q 008060          486 LRFRGVCGGIAATANWI-SNLIVAQSFLSLTQAIGTS  521 (579)
Q Consensus       486 ~~~~g~~~gi~~~~~~~-g~~i~~~~~g~~~~~~g~~  521 (579)
                      ++.|+++.|+.+..+.. ++.++|.+.|.+.|..|+.
T Consensus       362 ~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        362 AEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             CCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            99999999997655554 5888999999999998864

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-34  Score=284.83  Aligned_cols=440  Identities=22%  Similarity=0.322  Sum_probs=313.1

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcc-ccc----chhhHHHHHHHHHHHHHHHHHHhHhhhhccccchH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFK-SVD----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT  100 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~-~s~----~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~  100 (579)
                      .++..+.+.+...+.+.+.+|..+++.+.|.+...|. .+.    -..-..+.+..+..+|..+||++.|++.||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            5566778888889999999999999999998876543 221    11112388999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH
Q 008060          101 SILVADFLFFVGAVIMAAAP-------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL  173 (579)
Q Consensus       101 vl~~~~~l~~i~~ll~~~a~-------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i  173 (579)
                      ++...++++.+++++++++.       -.+++...|+++|+|.|+-+|...++.+|....+.||...+...+..++|...
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999887753       25788899999999999999999999999999999999998888888887777


Q ss_pred             HHHHHHHhcc----CcC----------cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCH-HHHHHHHHhhcCCCch
Q 008060          174 SYLINLAFTR----APG----------TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGRE-EEAQAILRKVYPAHEV  238 (579)
Q Consensus       174 g~~l~~~l~~----~~~----------~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~-~~~~~~~~~~~~~~~~  238 (579)
                      |.+++-.+..    ..+          -||..|.+.+++.++.+...+.+||++++.....+. +.+.   .+..+....
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc
Confidence            7766655432    111          399999999999888888888999999876332211 1111   111111111


Q ss_pred             hhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH---
Q 008060          239 ETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTAL---  315 (579)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  315 (579)
                      +.+.++.    ........+.....+.+.+..+ .-+.++ +....++..=.+++....+...+++..+..+.....   
T Consensus       273 ~~~~~~~----~~~~~~~~~~~~~~F~~~f~~~-hg~~Ll-gt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~  346 (538)
T KOG0252|consen  273 DIEAEST----AESDVPPPSNSFGLFSRLFLRW-HGKHLL-GTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHEL  346 (538)
T ss_pred             ccchhhc----cccCCCCcccccchHHHHHHHH-HHHHHH-HHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHH
Confidence            0000000    0000011111122233444433 223333 333444444445666666777777766654332222   


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCc
Q 008060          316 -----LLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYS  390 (579)
Q Consensus       316 -----~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (579)
                           ....+...+.++|.++...++|++|||+..+.+++++.+..+.+....+...                       
T Consensus       347 ~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-----------------------  403 (538)
T KOG0252|consen  347 FKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-----------------------  403 (538)
T ss_pred             HHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-----------------------
Confidence                 1222333334557777888999999999999999999988887776543100                       


Q ss_pred             cccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhcc
Q 008060          391 SAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSP  470 (579)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (579)
                                                                                  ...+.  ++...+..++...
T Consensus       404 ------------------------------------------------------------~~~Gf--~v~y~l~~ff~NF  421 (538)
T KOG0252|consen  404 ------------------------------------------------------------NTIGF--VVLYSLTFFFGNF  421 (538)
T ss_pred             ------------------------------------------------------------ccCce--eehHHHHHHHHhc
Confidence                                                                        00122  4445555556666


Q ss_pred             CcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-----hcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          471 GMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-----AIGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       471 ~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      |.......+.+|.+|++.||++.|+....+..|++++...++++.+     ..|.+..+++++++++++.++.+ ++|||
T Consensus       422 GPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEt  500 (538)
T KOG0252|consen  422 GPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPET  500 (538)
T ss_pred             CCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-Eeecc
Confidence            7677778999999999999999999999999999999999999999     78999999999999999988864 57899


Q ss_pred             CCCChHHHHHHHHhh
Q 008060          546 KGLPIEEIEKMLELR  560 (579)
Q Consensus       546 ~~~~~~~~~~~~~~~  560 (579)
                      |++++||++++.+.+
T Consensus       501 k~~~leei~~e~~~~  515 (538)
T KOG0252|consen  501 KGKSLEEISNEEESN  515 (538)
T ss_pred             cccCHHHhcChhhcc
Confidence            999999986554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.2e-32  Score=287.43  Aligned_cols=392  Identities=19%  Similarity=0.213  Sum_probs=286.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc
Q 008060           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA  119 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a  119 (579)
                      ++...++...++...|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQY---GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhH---HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence            34567788889999999999999998888   999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060          120 PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (579)
Q Consensus       120 ~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~  199 (579)
                      ++++.+++.|++.|++.+...+....++.|++|+++|++++++......+|..+++.+++.+.+..+ ||+.|++.+++.
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~  158 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLG  158 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888777 999999998877


Q ss_pred             HHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHH
Q 008060          200 LLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI  278 (579)
Q Consensus       200 l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (579)
                      ++..+. +++.||+|+... ..+.++.....+..             .  .+.+.+++++..+...++.+++|.++...+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (399)
T TIGR00893       159 IIWGVLWLKFIPDPPQKAK-WLTEEEKYIVVGGL-------------L--AEQQGKGPSTPKKYQIKELLKDRRVWGLAL  222 (399)
T ss_pred             HHHHHHhhheecCCCCccc-cCCHHHHhhcchhh-------------c--cccccccccCCCccchHHHhcCHHHHHHHH
Confidence            766665 444566543110 00111100000000             0  000001111222345667778777654433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHHHHHHHHHH
Q 008060          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV-ISLSGVILSLG  357 (579)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~~~  357 (579)
                      ..     +...........+.|.++++..+.+....++......++.+++.++.|++.||++||+... .......++.+
T Consensus       223 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T TIGR00893       223 GQ-----FLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGL  297 (399)
T ss_pred             HH-----HHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            32     2333455667778899988766667777788888888889999999999999999986221 11111111111


Q ss_pred             HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060          358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC  437 (579)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (579)
                      +...........                                                                    
T Consensus       298 ~~~~~~~~~~~~--------------------------------------------------------------------  309 (399)
T TIGR00893       298 VLSLLMFATNYV--------------------------------------------------------------------  309 (399)
T ss_pred             HHHHHHHHhccc--------------------------------------------------------------------
Confidence            111110000000                                                                    


Q ss_pred             ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                                    +..+  .........++..+..+..+++..|.+|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus       310 --------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~  373 (399)
T TIGR00893       310 --------------NIPY--AALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT  373 (399)
T ss_pred             --------------hhHH--HHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC
Confidence                          0011  222222223333345677788999999999999999999999999999999999999999


Q ss_pred             cc-cchhhHHHHHHHHHHHHHhhh
Q 008060          518 IG-TSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       518 ~g-~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      .| +...|.+.+++.+++.+..++
T Consensus       374 ~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       374 TGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHH
Confidence            88 988999888888887766543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=1.4e-32  Score=285.47  Aligned_cols=371  Identities=19%  Similarity=0.141  Sum_probs=273.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      .+....+..+..+. ....++..|.+.+++|.+..+.   +++.+++.+++.+++++.|+++||+|||+++..+.++.++
T Consensus         5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~   80 (377)
T TIGR00890         5 VLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV---AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL   80 (377)
T ss_pred             EeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence            34444444444443 5567899999999999998888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      +.++++++++++.+++.|++.|++.+...+.....+.+++| ++|++++++...+.++|..+++.+.+.+.+..+ ||+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~  158 (377)
T TIGR00890        81 GFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPAA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHHH
Confidence            99999999999999999999999999888888888999997 569999999999999999887777767666665 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      |++.+++.++..+. +++++++|+... +.+                                 ++.+.+..+.++.+++
T Consensus       159 f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~~~~~~  204 (377)
T TIGR00890       159 FIYMGIIFLLVIVLGAFLIGYPPGQLI-KTN---------------------------------IEVSVKDYTVWEMLRT  204 (377)
T ss_pred             HHHHHHHHHHHHHHHHHheecCchhcc-ccC---------------------------------cccchhhhhHHHHHcC
Confidence            99999887776666 444554432100 000                                 0000011234566777


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      +.++...+....     ..........+.+.+.++.+. +....+.......++.++++++.|++.||++||+.+..+..
T Consensus       205 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       205 PQFWVLYLSFFL-----NAVSGLLLIGLYKPYGQSLGL-SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             ccHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            766543332221     112223333445666666554 55566777788888899999999999999999999888887


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN  430 (579)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (579)
                      +..++.+++......                                                                 
T Consensus       279 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  293 (377)
T TIGR00890       279 ISAVGMAAMLFIPML-----------------------------------------------------------------  293 (377)
T ss_pred             HHHHHHHHHHHcccc-----------------------------------------------------------------
Confidence            777776655432110                                                                 


Q ss_pred             cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060          431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS  510 (579)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~  510 (579)
                                            ..+.......+.....+ ...+....+..|.+|++.|+++.|+.+....+|..++|.+
T Consensus       294 ----------------------~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~  350 (377)
T TIGR00890       294 ----------------------NDVLFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLI  350 (377)
T ss_pred             ----------------------hhHHHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence                                  01111222222222222 2234445678899999999999999999999999999999


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHH
Q 008060          511 FLSLTQAIGTSWTFLIFGVISVAALL  536 (579)
Q Consensus       511 ~g~~~~~~g~~~~~~~~~~~~~~~~~  536 (579)
                      .|.+.+..||+..|.+.+++.+++.+
T Consensus       351 ~g~l~~~~g~~~~f~~~~~~~~~~~~  376 (377)
T TIGR00890       351 ASHALTEIGFEYTFIVTGAFALTSLA  376 (377)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHhcc
Confidence            99999999999999988887777643

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=3.6e-31  Score=276.47  Aligned_cols=372  Identities=13%  Similarity=0.100  Sum_probs=272.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      .+..+.+..++.+.......+.+|.+.+++|.+..+.   |++.+.+.+++.++++++|+++||+|||+++..+.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA---GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH---hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence            3455666778888888889999999999999998888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      +.+++++++|++.+++.|++.|++.+...+....++.|++++++|++++++...+..+|..+++.+++++.+..+ ||+.
T Consensus        81 ~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~  159 (382)
T PRK10091         81 GNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYT  159 (382)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHH
Confidence            999999999999999999999999999888888999999999999999999999999999999999999988776 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      |++.+++.++..+. ++.+||.++    +.+.                                     +..+..+.+++
T Consensus       160 f~~~~~~~~~~~~~~~~~lp~~~~----~~~~-------------------------------------~~~~~~~~~~~  198 (382)
T PRK10091        160 FLLIAVFNIAVLASIYFWVPDIRD----EAKG-------------------------------------GLREQFHFLRS  198 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCc----cccc-------------------------------------CHHHHHHHhcC
Confidence            99998876665554 455677532    0000                                     00011233455


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      +..+...+..     +....+......+.+.++++..+.+....+++.....++.+++.++.+++.||+++|+.+..+..
T Consensus       199 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~  273 (382)
T PRK10091        199 PAPWLIFAAT-----MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDF  273 (382)
T ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHH
Confidence            5444322211     11122233334455666665445567778888888899999999999999999999999888887


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN  430 (579)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (579)
                      +.+++.+++....+.                                                                 
T Consensus       274 ~~~i~~~~~~~~~~~-----------------------------------------------------------------  288 (382)
T PRK10091        274 IIVLALLMLFFFGGM-----------------------------------------------------------------  288 (382)
T ss_pred             HHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence            777766554432210                                                                 


Q ss_pred             cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060          431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS  510 (579)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~  510 (579)
                                             .+...+...+...+......+.......+..|++.++.+  ..+....+|++++|.+
T Consensus       289 -----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~  343 (382)
T PRK10091        289 -----------------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYC  343 (382)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHH
Confidence                                   112222222222222111122222334444455555544  3467788999999999


Q ss_pred             HHHHHHh-cccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          511 FLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       511 ~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      .|.+.|. .+|+..+.+.++++++.........+
T Consensus       344 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        344 GGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             hHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            9999996 57988888888777776665544433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=1.7e-31  Score=283.89  Aligned_cols=406  Identities=14%  Similarity=0.071  Sum_probs=280.0

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (579)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l  108 (579)
                      ++..+....+.....+.++..+....|.+.+ +|.+..+.   +++.+++.++..+++++.|+++||+|||++++++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~  100 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL---GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  100 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh---HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHH
Confidence            5666677777778888888888888888876 59988888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          109 FFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       109 ~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      .+++.++.++.    ++++.+.+.|++.|++.+..++.....+.|++|+++|++++++++.+.++|..+++.+.+...+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       101 SAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            99998887764    46778889999999999999898889999999999999999999999999999998877765443


Q ss_pred             cCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          185 PGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      ..+||+.|++.++++++..+. ++++||+|+....+...+.        +.  +...      +..++ .+.+.+.++..
T Consensus       181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~------~~~~~-~~~~~~~~~~~  243 (438)
T TIGR00712       181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEY--------RN--DYPD------DYNEK-AEQELTAKEIF  243 (438)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhc--------cc--cccc------ccccc-cccccchHHHH
Confidence            224999999998887775544 6667887653211000000        00  0000      00000 00000000111


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      ....+|++.++...+...     +.+...+....|.|.|+++..+.+...+++...+..++++++.++.|+++||+++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       244 MQYVLPNKLLWYIAIANV-----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHHHccCchHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            124567776655433322     223345567778999998865556677788888888889999999999999996543


Q ss_pred             hhHHHHHHHHHHHH-HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060          344 LLVISLSGVILSLG-VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF  422 (579)
Q Consensus       344 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (579)
                      ....+.....+..+ ++......                                                         
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------  341 (438)
T TIGR00712       319 RGATGVFFMTLVTIAVIVYWMNP---------------------------------------------------------  341 (438)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcC---------------------------------------------------------
Confidence            32333322222211 11111110                                                         


Q ss_pred             CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060          423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI  502 (579)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~  502 (579)
                                                  .+..+...+.++..+ ....+..........|.+|++.||+++|+.+..+++
T Consensus       342 ----------------------------~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~  392 (438)
T TIGR00712       342 ----------------------------AGNPLVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  392 (438)
T ss_pred             ----------------------------CCchHHHHHHHHHHH-HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHh
Confidence                                        001121122222221 111121112224567899999999999999999888


Q ss_pred             HH-HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          503 SN-LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       503 g~-~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      ++ +++|.+.|.+.|..|+...|.+.+++.+++.+..+++.||.|
T Consensus       393 gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       393 GGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            75 689999999999999999999999888888888777777755

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=2.9e-31  Score=278.30  Aligned_cols=376  Identities=12%  Similarity=0.099  Sum_probs=277.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVAD  106 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~  106 (579)
                      ..+++.....++..+..+......++.+|.+.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~---g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~   79 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM---SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGF   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            345667777788888999999999999999999999998888   99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          107 FLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       107 ~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ++.+++.++.+++++++.+++.|+++|++.+...+....++.|++|+++|+++++......++|..++|.+.+.+.....
T Consensus        80 ~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  159 (394)
T PRK03699         80 ALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSI  159 (394)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999899999999999999999999988999999999999888765333


Q ss_pred             cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHH
Q 008060          187 TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVK  266 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (579)
                      +||+.|.+.+++.++..++.++ .+.|+.. ++.+                                ++.++    ..++
T Consensus       160 gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~-~~~~--------------------------------~~~~~----~~~~  201 (394)
T PRK03699        160 EWYWVYACIGLVYVAIFILTLF-SEFPALG-KHAP--------------------------------KADKP----VAKE  201 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-cCCcccc-ccCc--------------------------------cccCc----cccc
Confidence            4999999888776665554333 2222100 0000                                00000    0000


Q ss_pred             hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060          267 LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (579)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (579)
                      . .++.++     ...+..++.....+.+..|.|.|+++..+.+..+++.+.....++.++++++.++++||++||+.+.
T Consensus       202 ~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~  275 (394)
T PRK03699        202 K-WGIGVL-----FLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT  275 (394)
T ss_pred             c-CChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH
Confidence            0 112221     1112223333445667789999997765557777888888888889999999999999999999887


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      ....+..+...++....+                                                              
T Consensus       276 ~~~~~~~~~~~~~~~~~~--------------------------------------------------------------  293 (394)
T PRK03699        276 VLAGLALVLMYLFVNTDD--------------------------------------------------------------  293 (394)
T ss_pred             HHHHHHHHHHHHHHHcCC--------------------------------------------------------------
Confidence            766555554433322110                                                              


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI  506 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i  506 (579)
                                                 .+...+..++. ++...+..+...+...|..|. .++...|.......+|..+
T Consensus       294 ---------------------------~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i  344 (394)
T PRK03699        294 ---------------------------PSHLLYAILGL-GFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTML  344 (394)
T ss_pred             ---------------------------chHHHHHHHHH-HHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHH
Confidence                                       11112222222 222222334444556666654 4577888899999999999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +|.+.|.+.+..|++..+++.+++.+++.+.+..
T Consensus       345 ~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        345 TFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999888888887765433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=9.1e-32  Score=288.47  Aligned_cols=400  Identities=20%  Similarity=0.203  Sum_probs=287.7

Q ss_pred             cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh----------------------hcccccchhhHHHHHHHHHHHH
Q 008060           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD----------------------DFKSVDRKTLLQESIVSMAVAG   81 (579)
Q Consensus        24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~----------------------~~~~s~~~~~~~g~l~s~~~lg   81 (579)
                      ...+.||.+...+++.....+.++..++...+.+.+                      |++.+..+.   |++.+.+.++
T Consensus        12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~s~~~~~   88 (465)
T TIGR00894        12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ---GLILSSHFYG   88 (465)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh---hHHHHHHHHH
Confidence            346678888999999999999999999999988876                      777877777   9999999999


Q ss_pred             HHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh
Q 008060           82 AIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL  159 (579)
Q Consensus        82 ~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a--~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~  159 (579)
                      +.+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+....++.|++|+++|+++
T Consensus        89 ~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~  168 (465)
T TIGR00894        89 QIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRL  168 (465)
T ss_pred             HHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999999999999998887543  5688999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhccCc-CcchhHHHHhhHHHHHHHHHHHh-ccCChhHHHhcCCHHHHHHHHHhhcCCCc
Q 008060          160 VSTNGFLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHE  237 (579)
Q Consensus       160 ~~~~~~~~~iG~~ig~~l~~~l~~~~-~~Wr~~f~i~~i~~l~~~i~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~  237 (579)
                      +++...+..+|.++++++++.+.+.. + ||+.|++.++++++..++++. .+|+|+..... +.++.+.          
T Consensus       169 ~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~----------  236 (465)
T TIGR00894       169 LGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI-SKFEKKY----------  236 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC-CHHHHHH----------
Confidence            99999999999999999999998874 6 999999999888777766544 55666421111 1111100          


Q ss_pred             hhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 008060          238 VETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLL  317 (579)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (579)
                             ..+..+++  ..+...+..+++.++++.++...+.     .++...+.+.+..|+|.|+++..+.+....++.
T Consensus       237 -------i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~  302 (465)
T TIGR00894       237 -------INSSLQGQ--KGSTRQSLPIKAIPKSLPVWAIWFA-----IFGHFWLYTILPTYLPTFISWVLRVSGKENGLL  302 (465)
T ss_pred             -------HHhhcccc--cCCCCCCCCHHHHhcCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHH
Confidence                   00000000  0011122357778888877654333     334445567778899999987666677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCchhhH--------HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060          318 SLVTSGLNAAGSIVSIYFIDRTGRKKLLV--------ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (579)
Q Consensus       318 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (579)
                      .....++.+++.+++|+++||+++|+...        .+......+..++..... ..                      
T Consensus       303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------------  359 (465)
T TIGR00894       303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL-SA----------------------  359 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc-CC----------------------
Confidence            88889999999999999999976543211        111111111111111110 00                      


Q ss_pred             ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060          390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS  469 (579)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (579)
                                                                                     ..+..++.+.+...+. 
T Consensus       360 ---------------------------------------------------------------~~~~~~~~~~l~~~~~-  375 (465)
T TIGR00894       360 ---------------------------------------------------------------AFYLTIIILTLANAVS-  375 (465)
T ss_pred             ---------------------------------------------------------------chHHHHHHHHHHHHHh-
Confidence                                                                           0112222222222222 


Q ss_pred             cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHHHhhh
Q 008060          470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI---GTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      .+..+..+....|..|. .+|.++|+.++.+.++++++|.+.|.+.+..   +|...|.+.+++.+++.++..+
T Consensus       376 ~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       376 SGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            22223334455676654 8899999999999999999999999987653   3778888888888888776543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=4.1e-31  Score=283.42  Aligned_cols=385  Identities=18%  Similarity=0.083  Sum_probs=258.4

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (579)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l  108 (579)
                      +++.+....+..+...++....++..|.+.+++|.+..+.   +++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~  110 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI---GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLML  110 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            4455556666677777777788899999999999988888   8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc----C
Q 008060          109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR----A  184 (579)
Q Consensus       109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~----~  184 (579)
                      ++++.++.+++++++.+++.|+++|++.+... ....+++|++|+++|++++++......+|..+++.+.+.+..    .
T Consensus       111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~  189 (476)
T PLN00028        111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA  189 (476)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988654 456688999999999999999987777777777666654421    1


Q ss_pred             ----cCcchhHHHHhhHHHHHHHHHHHhccCC-hhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060          185 ----PGTWRWMLGVAGIPALLQFILMLLLPES-PRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS  259 (579)
Q Consensus       185 ----~~~Wr~~f~i~~i~~l~~~i~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                          ..+||+.|++.+++.++..+..++++++ |+     ++.++.+                        ++.+.++..
T Consensus       190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~------------------------~~~~~~~~~  240 (476)
T PLN00028        190 GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK------------------------KSGTMPKDS  240 (476)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH------------------------hcCcccccc
Confidence                1149999999998887776665555443 32     1000000                        000000001


Q ss_pred             hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (579)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (579)
                      ....+++.++++++|...+..     +..+........+.|.|+.+..+.+...++.+.....++++++++++|+++||+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~  315 (476)
T PLN00028        241 FSKVLRYGVTNYRTWILALTY-----GYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA  315 (476)
T ss_pred             HHHHHHHHHcCchhHHHHHHH-----HHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            122345567777765433221     122223344566788888766555677788888888999999999999999999


Q ss_pred             CCchh----hHHHHHHHHHH-HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcc
Q 008060          340 GRKKL----LVISLSGVILS-LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFC  414 (579)
Q Consensus       340 ~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (579)
                      +||+.    .........++ ..++..... .                                                
T Consensus       316 ~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-~------------------------------------------------  346 (476)
T PLN00028        316 ARRFGMRGRLWALWIVQTLGGVFCIWLGRA-N------------------------------------------------  346 (476)
T ss_pred             HHhcCcchhHHHHHHHHHHHHHHHHHhccc-c------------------------------------------------
Confidence            86521    11111111111 111111100 0                                                


Q ss_pred             cCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhH
Q 008060          415 ASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGG  494 (579)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  494 (579)
                                                            ..+..++.++++..+.... .+..+.+..++. ++.+|++.|
T Consensus       347 --------------------------------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~g  386 (476)
T PLN00028        347 --------------------------------------SLGAAIVVMILFSIFVQAA-CGATFGIVPFVS-RRSLGVISG  386 (476)
T ss_pred             --------------------------------------hHHHHHHHHHHHHHHHHHh-hhhhcccCcccC-hhhchhhhh
Confidence                                                  0111122222222222111 223445556664 478999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          495 IAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       495 i~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      +.+..+.+|++++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus       387 ~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        387 LTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             hhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            998888888888877654 2223458889999998888887776443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=2.5e-30  Score=269.73  Aligned_cols=380  Identities=13%  Similarity=0.051  Sum_probs=280.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      +..++.+....++.++......+++++.+.+.+ +++++..+.   +++.+++.+++.++.++.|++.||+|+|+++.++
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~---g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~  106 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL---FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFS  106 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            345567888888888899999999999999876 899999988   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060          106 DFLFFVGAVIMAAA-----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA  180 (579)
Q Consensus       106 ~~l~~i~~ll~~~a-----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~  180 (579)
                      .+++++.+++.+++     ++++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++.+.
T Consensus       107 ~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        107 TAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999986     8999999999999998 77889999999999999999999999977777777766666554


Q ss_pred             hc-----cCcC------------cchhHHHHhhHHHHHHHHHHHh-ccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060          181 FT-----RAPG------------TWRWMLGVAGIPALLQFILMLL-LPESPRWLYRKGREEEAQAILRKVYPAHEVETEI  242 (579)
Q Consensus       181 l~-----~~~~------------~Wr~~f~i~~i~~l~~~i~~~~-lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (579)
                      +.     ...+            +||..+++..++.++..++.++ .++.|+                            
T Consensus       186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~----------------------------  237 (462)
T PRK15034        186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS----------------------------  237 (462)
T ss_pred             HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc----------------------------
Confidence            33     1111            3788888887777666666444 333221                            


Q ss_pred             HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 008060          243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS  322 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (579)
                                    ++...++..+.+|+|..|...++.     ++.+.++..+.++.|.|+++...  ............
T Consensus       238 --------------~~~~~~~~~~vlk~~~~Wllslly-----~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~  296 (462)
T PRK15034        238 --------------SRASIADQLPVLQRLHLWLLSLLY-----LATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGP  296 (462)
T ss_pred             --------------cccCHHHHHHHhCCCchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHH
Confidence                          111234567789999887644433     44455666777788999876432  222222233445


Q ss_pred             HHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060          323 GLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK  402 (579)
Q Consensus       323 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (579)
                      +...+.++++|+++||+|+++++.++++.+.++...+.........                                  
T Consensus       297 l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~----------------------------------  342 (462)
T PRK15034        297 FIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGS----------------------------------  342 (462)
T ss_pred             HHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccc----------------------------------
Confidence            6688899999999999999999998888777766544433221100                                  


Q ss_pred             cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060          403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE  482 (579)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (579)
                                                                       ..-+...+.+.......+++-+ ..+-++.+
T Consensus       343 -------------------------------------------------~~~~~~~~~~~~l~~~~G~gng-svfk~ip~  372 (462)
T PRK15034        343 -------------------------------------------------GNFIAFYAVFMGLFLTAGLGSG-STFQMIAV  372 (462)
T ss_pred             -------------------------------------------------cHHHHHHHHHHHHHHHhcccch-HHHHhhHH
Confidence                                                             0112222222222233333322 33456666


Q ss_pred             cccc---------------------ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060          483 IYPL---------------------RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       483 ~~p~---------------------~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      ++|+                     +..|.+.|+....+.+|+++.|.++|...+..| +...|+.+.+..+++.++.|.
T Consensus       373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence            6663                     256899999999999999999999999998876 777899999999999888876


Q ss_pred             hcc
Q 008060          541 FVP  543 (579)
Q Consensus       541 ~~~  543 (579)
                      ..-
T Consensus       453 ~y~  455 (462)
T PRK15034        453 VYG  455 (462)
T ss_pred             Hhc
Confidence            543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=1.2e-30  Score=274.85  Aligned_cols=388  Identities=16%  Similarity=0.116  Sum_probs=282.4

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++..+.....+.+..++..++...+.+.+|.+.+++|.+..+.   ++..+.+.+++.+++++.|+++||+|||++++++
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   84 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV---PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG   84 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            4567777888888888889999999999999999999988887   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      ..+.+++.++..++++++.+++.|+++|++.+...+....++.|++|+++|.+++++......+|..++|.+++.+.+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402         85 VAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999888889999999999999999999998888899999999999998877


Q ss_pred             CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060          186 GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (579)
Q Consensus       186 ~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      + ||+.|++.+++.++..+. ++..||+++...   + +                               ...++...+.
T Consensus       165 ~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-------------------------------~~~~~~~~~~  208 (406)
T PRK15402        165 P-WRGMFVLFAALAALSFFGLWRAMPETAGRVG---E-K-------------------------------LSLKELGRDY  208 (406)
T ss_pred             C-ccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---c-c-------------------------------ccHHHHHHHH
Confidence            6 999999988877766654 455676642100   0 0                               0000012345


Q ss_pred             HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                      ++.+++|.++...+.....     .........+.|.++.+..+.+....+.......++.+++.++.+++.||+++|+.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~  283 (406)
T PRK15402        209 KLVLKNRRFVAGALALGLV-----SLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL  283 (406)
T ss_pred             HHHHcCcHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            6677888765543332221     11223344556777765544466666666666677788999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      +..+..+..++.+++.........                                                        
T Consensus       284 ~~~~~~~~~~g~~~~~~~~~~~~~--------------------------------------------------------  307 (406)
T PRK15402        284 IRMGLWPMVAGLLLAALATVISSH--------------------------------------------------------  307 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccc--------------------------------------------------------
Confidence            888887777776666554211100                                                        


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN  504 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~  504 (579)
                                                  ..+.......++..+.+.. .+....... ..+++.+|+..++.++...++.
T Consensus       308 ----------------------------~~~~~~~~~~~~g~g~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~  357 (406)
T PRK15402        308 ----------------------------AYLWLTAGLSLYAFGIGLA-NAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIF  357 (406)
T ss_pred             ----------------------------cHHHHHHHHHHHHHHHHHH-hhhHHHHHh-hhccccccHHHHHHHHHHHHHH
Confidence                                        0112223333333333222 222222222 2345889999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      .+++.+.+.+.+..+.....+..++..++..++...+.+
T Consensus       358 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK15402        358 TVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLVRIFLK  396 (406)
T ss_pred             HHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999988877655444444444444444333333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=8.5e-32  Score=284.62  Aligned_cols=381  Identities=17%  Similarity=0.134  Sum_probs=283.0

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh-
Q 008060           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-  118 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~-  118 (579)
                      .+...+......+.+|.+.++++.+..+.   |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+. 
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         26 RFISIFGLGLLGVAVPVQIQMMTGSTLQV---GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            44455556677788898888888877666   99999999999999999999999999999999888877776665432 


Q ss_pred             ----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060          119 ----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (579)
Q Consensus       119 ----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i  194 (579)
                          .++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+.+..+ |++.|++
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~  181 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL  181 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence                56789999999999999998889889999999999999999999999999999999999999988766 9999998


Q ss_pred             hhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060          195 AGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR  274 (579)
Q Consensus       195 ~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (579)
                      .++..++..+..+.+|++++..  +.+ +                               +..++....++..+++|.++
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~--~~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~  227 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPPP--QPR-E-------------------------------HPLRSLLAGFRFLLASPVVG  227 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC--ccc-c-------------------------------cchHHHHHHHHHHHcChHHH
Confidence            8877776666666777754210  000 0                               00000112344556666655


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 008060          275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (579)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (579)
                      ...+......      .......+.|.|+++..+.+....+++.....++.+++.++.+++.||.++++.+..+..+..+
T Consensus       228 ~~~~~~~~~~------~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~  301 (417)
T PRK10489        228 GIALLGGLLT------MASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFL  301 (417)
T ss_pred             HHHHHHHHHH------HHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHH
Confidence            4333322211      1234556778898885555667778888888899999999999999997777777777766666


Q ss_pred             HHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccc
Q 008060          355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVK  434 (579)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (579)
                      +.+++....+                                                                      
T Consensus       302 ~~~~~~~~~~----------------------------------------------------------------------  311 (417)
T PRK10489        302 AVGLFGLMPM----------------------------------------------------------------------  311 (417)
T ss_pred             HHHHHHccch----------------------------------------------------------------------
Confidence            6554432110                                                                      


Q ss_pred             cccccccccccccCCCCCcchHHHHHHHHHHHhhccCc-ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060          435 DLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM-GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS  513 (579)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~  513 (579)
                                         .+...+..++++.  +.+. .+...+++.|..|++.||+++|+.++..++|..++|.+.|.
T Consensus       312 -------------------~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        312 -------------------WILAVLCLALFGY--LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             -------------------HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence                               1112222222222  2222 23445788899999999999999999999999999999999


Q ss_pred             HHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060          514 LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEK  555 (579)
Q Consensus       514 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (579)
                      +.+..|+...+++.+++.++..++.+..++++|+++.||+|+
T Consensus       371 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        371 LGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            999999988998888887777777677788888777665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=9.8e-32  Score=286.73  Aligned_cols=400  Identities=14%  Similarity=0.067  Sum_probs=275.6

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ..++|.++..+.+...........++..+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++.+
T Consensus        14 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   90 (455)
T TIGR00892        14 GGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET---AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAG   90 (455)
T ss_pred             CCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH---HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhh
Confidence            4567877777777766666666778889999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhHHHH-HHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          106 DFLFFVGAVIMAAAPNPGALIT-GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~~~ll~-~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      .++.+++.++++++++++.+++ .|++.|++.+...+....++.++++ ++|++++++...+..+|..++|.+++.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~  169 (455)
T TIGR00892        91 GLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES  169 (455)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998865 5799999999877777888899996 6799999999999999999999999999887


Q ss_pred             cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+ ||+.|++.+++.++..+..+++.+.++... +.+.++.    .........        +..... ...+...+...
T Consensus       170 ~g-wr~~f~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~--------~~~~~~-~~~~~~~~~~~  234 (455)
T TIGR00892       170 FG-WRGSFLILGGLLLHCCVCGALMRPVGPSQR-VSKSKSK----EGLPPDGST--------KKLSKK-STAEKINRFLD  234 (455)
T ss_pred             hC-hHHHHHHHHHHHHHHHHHHHHhCCCCcccc-ccccccc----ccCCCCCcc--------cccccc-chhhhhhhhcc
Confidence            77 999999999877766555444432211000 0000000    000000000        000000 00000001111


Q ss_pred             HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCc
Q 008060          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT--GRK  342 (579)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~  342 (579)
                      .+.+++|.++...+...     ....+......+.|.|+++.+. +...++.+....+++.++++++.+++.||.  ++|
T Consensus       235 ~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  308 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNV-----IMFLGFFAPIIFLVPYAKDKGV-DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH  308 (455)
T ss_pred             hHHhcCchHHHHHHHHH-----HHHHHccchHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH
Confidence            35677777654333222     2223344556677888887655 566777888888888999999999999973  334


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF  422 (579)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (579)
                      +....+......+...+......                                                         
T Consensus       309 ~~~~~~~~~~~~~l~~ll~~~~~---------------------------------------------------------  331 (455)
T TIGR00892       309 VQYLFSFALLFNGLTHLLCALAG---------------------------------------------------------  331 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---------------------------------------------------------
Confidence            33333322222222111111110                                                         


Q ss_pred             CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHH
Q 008060          423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWI  502 (579)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~  502 (579)
                                                    ..+..++..++.+..+ ....+...+...|.+|++.+++++|+.+....+
T Consensus       332 ------------------------------~~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l  380 (455)
T TIGR00892       332 ------------------------------DYTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECC  380 (455)
T ss_pred             ------------------------------hHHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHH
Confidence                                          0122233333333332 223445567888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHh
Q 008060          503 SNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       503 g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~  538 (579)
                      |++++|.+.|.+.+..| |...|.+.+++.+++.++.
T Consensus       381 g~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~  417 (455)
T TIGR00892       381 AVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL  417 (455)
T ss_pred             HHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence            99999999999999874 8889998888877776643

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=1.2e-30  Score=273.28  Aligned_cols=386  Identities=24%  Similarity=0.261  Sum_probs=273.4

Q ss_pred             cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL  103 (579)
Q Consensus        24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~  103 (579)
                      ..++++++.+....+..+..+++....++..|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~   86 (398)
T TIGR00895        10 PLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL---GFLFSAGLIGMAFGALFFGPLADRIGRKRVLL   86 (398)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHH
Confidence            344566777777777888888888889999999999999988887   99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060          104 VADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (579)
Q Consensus       104 ~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~  183 (579)
                      .+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895        87 WSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CcCcchhHHHHhhHHHHHHHH-HHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh
Q 008060          184 APGTWRWMLGVAGIPALLQFI-LMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI  262 (579)
Q Consensus       184 ~~~~Wr~~f~i~~i~~l~~~i-~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      ..+ ||+.|++.+++.++..+ .+.++||++++...+ +.++..+..+........+.+ +    ...+  +..++....
T Consensus       167 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~----~~~~--~~~~~~~~~  237 (398)
T TIGR00895       167 VFG-WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ-S----ALPE--QKATQGTKR  237 (398)
T ss_pred             ccc-ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc-c----cccc--cccccchhh
Confidence            777 99999998755554444 467788887655444 222222222221111000000 0    0000  000011112


Q ss_pred             hHHH-hhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060          263 NLVK-LLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (579)
Q Consensus       263 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (579)
                      +..+ .++.+..+......  ...+...........+.|.+.++.+. +....+.......++.+++.++.++++||++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  314 (398)
T TIGR00895       238 SVFKALFQGKTARITVLLW--LLYFMLLVGVYFLTNWLPKLMVELGF-SLSLAATGGALFNFGGVIGSIIFGWLADRLGP  314 (398)
T ss_pred             HHHHHHhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence            2222 33333222222211  22223344556667778866666655 55667777788888999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060          342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL  421 (579)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (579)
                      |+...... +..+...++.....                                                         
T Consensus       315 ~~~~~~~~-~~~~~~~~~~~~~~---------------------------------------------------------  336 (398)
T TIGR00895       315 RVTALLLL-LGAVFAVLVGSTLF---------------------------------------------------------  336 (398)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhh---------------------------------------------------------
Confidence            84443333 33332222222111                                                         


Q ss_pred             CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060          422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW  501 (579)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~  501 (579)
                                                     ..+...+..++.+.+.+ +..+..+++..|.+|++.||++.|+.++...
T Consensus       337 -------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  384 (398)
T TIGR00895       337 -------------------------------SPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPTAIRATGVGWAIGIGR  384 (398)
T ss_pred             -------------------------------CHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence                                           01122333333333322 2345567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 008060          502 ISNLIVAQSFLSL  514 (579)
Q Consensus       502 ~g~~i~~~~~g~~  514 (579)
                      +|.+++|.+.|.+
T Consensus       385 ~g~~~g~~~~G~l  397 (398)
T TIGR00895       385 LGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHhHHhc
Confidence            9999999999875

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=3.4e-30  Score=269.94  Aligned_cols=367  Identities=17%  Similarity=0.121  Sum_probs=267.1

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (579)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l  108 (579)
                      .|+.+..+.+..+..........+.+|.+.+++|.++.+.   ++..+++.++..+++++.|+++||+|||++++.+.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~   94 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA---GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL   94 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence            5555555555555555555566678899999999999888   9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060          109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W  188 (579)
                      .+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+.+..+ |
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w  173 (394)
T PRK10213         95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-W  173 (394)
T ss_pred             HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998887 9


Q ss_pred             hhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060          189 RWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (579)
Q Consensus       189 r~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (579)
                      |+.|++.++++++..+. ....||.|+..                                         +....+..+.
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----------------------------------------~~~~~~~~~~  212 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----------------------------------------SHQKQNTFRL  212 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCccc-----------------------------------------ccchhHHHHH
Confidence            99999988766655444 33456643200                                         0001123466


Q ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 008060          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYY-SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV  346 (579)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  346 (579)
                      +++|.++...+.....     +.+......+ .|.+.++.+. +....+......+++.+++.++.+++.||.+ |+.+.
T Consensus       213 l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~  285 (394)
T PRK10213        213 LQRPGVMAGMIAIFMS-----FAGQFAFFTYIRPVYMNLAGF-GVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALA  285 (394)
T ss_pred             hcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHH
Confidence            7777776544332111     1222333334 4677666555 5566777778788889999999999999954 44444


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      .+..+..++..++....+                                                              
T Consensus       286 ~~~~~~~~~~~~l~~~~~--------------------------------------------------------------  303 (394)
T PRK10213        286 GAPLVLAVSALVLTLWGS--------------------------------------------------------------  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHhh--------------------------------------------------------------
Confidence            444443333333322211                                                              


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI  506 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i  506 (579)
                                                ..|......++.+.++... .+...+.+.+..| +.++...++.....++|..+
T Consensus       304 --------------------------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~  355 (394)
T PRK10213        304 --------------------------DKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTC  355 (394)
T ss_pred             --------------------------hHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHH
Confidence                                      0222233333333333222 2333346667676 44667778888888999999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060          507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  537 (579)
                      ||.+.|.+.|..|+...+...+++.++..++
T Consensus       356 G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        356 GAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999999999999888888777666555544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1e-30  Score=274.76  Aligned_cols=365  Identities=18%  Similarity=0.149  Sum_probs=264.5

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           31 RLAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        31 ~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      +.+..+.+..+...++..+..+.+|. +.+++|.+..+.   |++.+++.+++.+++++.|+++||+|||++++.+.++.
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA---GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH---HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            34455667777888888888889987 678899988887   99999999999999999999999999999999999988


Q ss_pred             HHHHHHHHhc--------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          110 FVGAVIMAAA--------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       110 ~i~~ll~~~a--------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      +++.+.+.++        .+++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++|+.+++.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            8776665443        25778999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK  261 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                      .+..+ ||+.+++.++..++..+.....|+.++    + + +                                    ++
T Consensus       172 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~------------------------------------~~  208 (399)
T PRK05122        172 YHWGG-LAGLGLLIMLLALLGLLLARPRPAVPP----V-K-G------------------------------------ER  208 (399)
T ss_pred             HHccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C-c------------------------------------cc
Confidence            88777 999988776655443333322222210    0 0 0                                    00


Q ss_pred             hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060          262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (579)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (579)
                      .+..+.++.  .+......     ......+.....+.|.++.+.+. +  ..+.......++.+++.++.+++.||+++
T Consensus       209 ~~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~  278 (399)
T PRK05122        209 LPFRRVLGR--VWPYGMGL-----ALASIGFGTIATFITLYYAARGW-D--GAALALTLFGVAFVGARLLFGNLINRLGG  278 (399)
T ss_pred             hhHHHHHHH--HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHccc-c--cchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            011122221  11111111     11122344455667777766554 2  23444556677788999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060          342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL  421 (579)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (579)
                      |+.+..+..+..++..++....+                                                         
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------  301 (399)
T PRK05122        279 LRVAIVSLLVEILGLLLLWLAPS---------------------------------------------------------  301 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc---------------------------------------------------------
Confidence            99888877777766655543211                                                         


Q ss_pred             CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060          422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW  501 (579)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~  501 (579)
                                                      .+..++...+.+.+++. ..+.......|..|++.||+++|+.+....
T Consensus       302 --------------------------------~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~  348 (399)
T PRK05122        302 --------------------------------PWMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLD  348 (399)
T ss_pred             --------------------------------HHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence                                            12223333333333322 233333556688899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      +|..++|.+.|.+.+..|++..|++.+++.+++.++.+++
T Consensus       349 ~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        349 LSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998888887765543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=8.9e-30  Score=265.89  Aligned_cols=361  Identities=15%  Similarity=0.124  Sum_probs=267.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      +..+.++.++.........+.+|.+.+++|.+..+.   |++.+.+.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV---GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555667778888999999999999999999988887   99999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (579)
Q Consensus       113 ~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f  192 (579)
                      .+++++++|++.+++.|+++|++.+...+.....+.+..++++|+++++++..+.++|..+|+.+++.+.+... |+..+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999999888888888899999999999999999999999999999999876532 33332


Q ss_pred             HHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          193 GVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       193 ~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                       ..+...... +...+.+..++    +.                                  ++  .+..+..+.+++|.
T Consensus       164 -~~~~~~~~~-~~~~~~~~~~~----~~----------------------------------~~--~~~~~~~~~~~~~~  201 (381)
T PRK03633        164 -VTGLVLAAI-LPLLFTRILNQ----QA----------------------------------EN--HDSTSIWPMLKLRQ  201 (381)
T ss_pred             -HHHHHHHHH-HHHHHhcccCC----CC----------------------------------CC--CCCCCHHHHHHhcc
Confidence             222222111 11222121110    00                                  00  00123455677776


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      ++......     +...........+.|.|+++.+. +....+.......++.+++.+..|++.||+++|+.+..+....
T Consensus       202 ~~~~~~~~-----~~~~~~~~~~~~~lp~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~  275 (381)
T PRK03633        202 ARLGVNGC-----IISGIVLGSLYGLMPLYLNHQGM-SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVV  275 (381)
T ss_pred             hHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHH
Confidence            65322211     11122334455678999887655 4556667777788889999999999999999999888777776


Q ss_pred             HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060          353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST  432 (579)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (579)
                      .++.+.+..  .                                                                    
T Consensus       276 ~~~~~~~~~--~--------------------------------------------------------------------  285 (381)
T PRK03633        276 ILGSIAMLS--Q--------------------------------------------------------------------  285 (381)
T ss_pred             HHHHHHHhh--h--------------------------------------------------------------------
Confidence            665544321  0                                                                    


Q ss_pred             cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 008060          433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFL  512 (579)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g  512 (579)
                                            +.......+++. ......|...+...|..|++.++...+..+...++|.+++|.+.|
T Consensus       286 ----------------------~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G  342 (381)
T PRK03633        286 ----------------------AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTA  342 (381)
T ss_pred             ----------------------HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  000111122221 122334555677788888888888888888889999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHHHh
Q 008060          513 SLTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       513 ~~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      .+.|+.|+.+.|.+.+++.++..+..
T Consensus       343 ~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        343 MLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            99999999999998888887665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.7e-30  Score=282.43  Aligned_cols=429  Identities=23%  Similarity=0.317  Sum_probs=302.8

Q ss_pred             hhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch
Q 008060           20 FSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR   99 (579)
Q Consensus        20 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr   99 (579)
                      .+.++..+.++......+.............++..+     ++.-+.+.....+..+++++|.++|++++|+++||+|||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-----~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk  148 (521)
T KOG0255|consen   74 NPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE-----WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRK  148 (521)
T ss_pred             CccccccccccccccccccceeEecCCCCcccccch-----hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccH
Confidence            344455555555444444443333333333333333     444444444459999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHH
Q 008060          100 TSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL  179 (579)
Q Consensus       100 ~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~  179 (579)
                      ++++.++++..++.++.++++|++.+++.|++.|++.++.......+++|++++++|+.+..+ ......+..+++.+++
T Consensus       149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a  227 (521)
T KOG0255|consen  149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA  227 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 7777777777888887


Q ss_pred             HhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH-HHhhhh-hhhhHHhhc
Q 008060          180 AFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEI-RDLKES-VDKEIEEEG  257 (579)
Q Consensus       180 ~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~  257 (579)
                      ++..   +||+.+++..+++++.++.+++.||+|||+..+++.+++.+.++++.+.+...... ...... .........
T Consensus       228 ~~~~---~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~  304 (521)
T KOG0255|consen  228 YITR---DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF  304 (521)
T ss_pred             HHHh---hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc
Confidence            7776   59999999999999888887777899999999999999999988876543111111 111111 111111122


Q ss_pred             cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS-PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI  336 (579)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  336 (579)
                      ..++..+.++++.++.++.++...+.++.      ....++. +......+. +.   .+.....+.....+....+...
T Consensus       305 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~------~~~~y~gl~~~~~~lg~-~~---~~~~~~~~~~~~p~~~~~~~~~  374 (521)
T KOG0255|consen  305 TEPKISFLDLFRTPRLRYRTLYLLFIWFV------FSLVYYGLSLNVSGLGG-NI---YLNFTLSGLVELPAYFRNGLLL  374 (521)
T ss_pred             cCCCCchhhhhcCHHHHHHHHHHHHHHHH------HhHHHHhhhhhhhhcCc-hH---HHHHHHHHHHHhhHHHHHHHHH
Confidence            22335688999998877666655544421      1222222 222222222 22   2333334446788888889999


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060          337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (579)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (579)
                      |+.|||.....+..+..++++..........                                                 
T Consensus       375 ~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------  405 (521)
T KOG0255|consen  375 PEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG-------------------------------------------------  405 (521)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHhhccch-------------------------------------------------
Confidence            9999999999999998888888877644211                                                 


Q ss_pred             CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH
Q 008060          417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA  496 (579)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~  496 (579)
                                                           .+...+...+..++.+.+.. ..+.+.+|++|+..|+.+.+..
T Consensus       406 -------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~  447 (521)
T KOG0255|consen  406 -------------------------------------GWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAI  447 (521)
T ss_pred             -------------------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHH
Confidence                                                 01222222222223333333 3378999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChHHHHH
Q 008060          497 ATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEK  555 (579)
Q Consensus       497 ~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (579)
                      ...+.++++++|.+...... ......+.+++....+.+++..+++|||+++++.+...
T Consensus       448 ~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~  505 (521)
T KOG0255|consen  448 SAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLL  505 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHH
Confidence            99999999999977755444 44444444467777777777778899999998755443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=1.5e-30  Score=280.52  Aligned_cols=391  Identities=16%  Similarity=0.135  Sum_probs=283.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF  110 (579)
Q Consensus        31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~  110 (579)
                      +.+..++++.+...++....++.+|.+.+++|.+..+.   +++.+.+.++..++.++.|+++||+|||++++.+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   78 (485)
T TIGR00711         2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV---QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFT   78 (485)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh---hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHH
Confidence            35667778888999999999999999999999988888   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                      ++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.+..+ ||+
T Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~  157 (485)
T TIGR00711        79 LGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRW  157 (485)
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-cee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998877 999


Q ss_pred             HHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHH------------HhhcCCCchhh-hHHHh-h----hhhhh
Q 008060          191 MLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAIL------------RKVYPAHEVET-EIRDL-K----ESVDK  251 (579)
Q Consensus       191 ~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~-~----~~~~~  251 (579)
                      .|++.+.++++..++ .+++||+++.  .+.+.+......            .+.......+. ..... .    .....
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (485)
T TIGR00711       158 IFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAF  235 (485)
T ss_pred             hhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence            999988777666655 4556665331  111111111100            00000000000 00000 0    00000


Q ss_pred             hHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHH
Q 008060          252 EIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIV  331 (579)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (579)
                      ...+.+++++....+++++|.++...+....     .....+...++.|.|+++..+.+..++++...+..++.+++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~  310 (485)
T TIGR00711       236 VVWELTDDNPLVDLRLFKYRNFTIGCVYMSL-----LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPI  310 (485)
T ss_pred             HHHHHcCCCCccCHHHHcCCChHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            0001111122223467788777655433322     23345566678899998876667888888888899999999999


Q ss_pred             HHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCC
Q 008060          332 SIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDC  411 (579)
Q Consensus       332 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (579)
                      .|++.||++||+.+..+..+..++..++.......                                             
T Consensus       311 ~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------------------------------------  345 (485)
T TIGR00711       311 AGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPD---------------------------------------------  345 (485)
T ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCC---------------------------------------------
Confidence            99999999999998888877777766555221100                                             


Q ss_pred             CcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060          412 GFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV  491 (579)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  491 (579)
                                                              ...+.......+.+.+.+... +.......+..|++.+|+
T Consensus       346 ----------------------------------------~~~~~~~~~~~l~g~g~~~~~-~~~~~~~~~~~~~~~~g~  384 (485)
T TIGR00711       346 ----------------------------------------TPFLAIALPQFIRGFGMGCFF-MPLTTIALSGLPPHKIAR  384 (485)
T ss_pred             ----------------------------------------CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHhH
Confidence                                                    001122222223332222222 222345557789999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060          492 CGGIAATANWISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       492 ~~gi~~~~~~~g~~i~~~~~g~~~~~~  518 (579)
                      +.|+.++...+|+.+++.+.+.+.++.
T Consensus       385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       385 GSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=7.5e-30  Score=267.50  Aligned_cols=364  Identities=17%  Similarity=0.144  Sum_probs=259.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      +..+.++.+...+......|.+|. +.+++|.+..+.   |++.+++.+++.++++++|+++||+|||++++.+.+...+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~---g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV---GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGL   93 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH---HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHH
Confidence            333444556666677777888886 678999988888   9999999999999999999999999999999999887776


Q ss_pred             HHHHHH---h-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060          112 GAVIMA---A-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (579)
Q Consensus       112 ~~ll~~---~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~  183 (579)
                      +.+...   .     .++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|++++++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382         94 AGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            654332   2     35789999999999999998889888999999999999999999999999999999999999988


Q ss_pred             CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          184 APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       184 ~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      ..+ ||+.+.+..+..++........||.++    ++                                  ++    +.+
T Consensus       174 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------------------~~----~~~  210 (392)
T PRK12382        174 HFG-FAALALTTMVLPLLAWAFNGTVRKVPA----HA----------------------------------GE----RPS  210 (392)
T ss_pred             ccC-hHHHHHHHHHHHHHHHHHHHhccCCCC----Cc----------------------------------cc----Cch
Confidence            776 998877655443332222222232211    00                                  00    001


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      .++.++  .++...+..     +....+......+.|.++++.+...   .+.......++.+++.++.|++.||+++|+
T Consensus       211 ~~~~~~--~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~  280 (392)
T PRK12382        211 LWSVVG--LIWKPGLGL-----ALQGVGFAVIGTFVSLYFASKGWAM---AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK  280 (392)
T ss_pred             HHHHHH--HHHHhHHHH-----HHHHHHHhHHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            111111  111111111     1112234455567778877765432   344455566777889999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP  423 (579)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (579)
                      .+..+..+..++.+++....+                                                           
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  301 (392)
T PRK12382        281 VAIVSLLVETVGLLLLWLAPT-----------------------------------------------------------  301 (392)
T ss_pred             ehHHHHHHHHHHHHHHHHccc-----------------------------------------------------------
Confidence            988888777777665443210                                                           


Q ss_pred             ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060          424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS  503 (579)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g  503 (579)
                                                    .+...+...+...+.+. ..+...+...|.+|++.||++.|+.++...+|
T Consensus       302 ------------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  350 (392)
T PRK12382        302 ------------------------------AWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIA  350 (392)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                                          12223333333332222 23444466778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060          504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV  542 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (579)
                      +.++|.+.|.+.+..||+..|.+.+++.+++.++.++..
T Consensus       351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999998888877765443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=4.3e-31  Score=274.46  Aligned_cols=375  Identities=16%  Similarity=0.130  Sum_probs=265.2

Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           39 GGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        39 ~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      .++..++++..++...|.+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL---GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH---HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            456777889999999999999999998888   99999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH-HHHHHhccCcCcchhHHHHhhH
Q 008060          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY-LINLAFTRAPGTWRWMLGVAGI  197 (579)
Q Consensus       119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~-~l~~~l~~~~~~Wr~~f~i~~i  197 (579)
                      +++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .+++.+.+..+ ||+.|++.++
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~  158 (379)
T TIGR00881        80 STSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGI  158 (379)
T ss_pred             hhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 56666666665 9999998887


Q ss_pred             HHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhH
Q 008060          198 PALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRG  276 (579)
Q Consensus       198 ~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (579)
                      +.++..+. +++.||+|+....+...++             .+++    .+..+++.+++.+..+...++++++|.++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSPQSCGLPPAEEM-------------PNEE----PDGDAEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHheeeCCCccccccCccccC-------------cccc----cccccccccccccchHHHHHHHHhcchHHHH
Confidence            76665544 5556776542111000000             0000    0000000001111122345567777776544


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHH
Q 008060          277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSL  356 (579)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  356 (579)
                      .+...     ...........+.|.++++..+.+....+.......++.+++.++.+++.||..+|+.............
T Consensus       222 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       222 SLGYV-----FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             HHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            33322     2233445667788888877655567777888888889999999999999998643332222222211111


Q ss_pred             HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060          357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL  436 (579)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (579)
                      ..+........                                                                     
T Consensus       297 ~~~~~~~~~~~---------------------------------------------------------------------  307 (379)
T TIGR00881       297 VSLLVYWLNPA---------------------------------------------------------------------  307 (379)
T ss_pred             HHHHHHhcCcc---------------------------------------------------------------------
Confidence            11111111000                                                                     


Q ss_pred             cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ  516 (579)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~  516 (579)
                                     ...+. .....+..+.+..+..+....+..|.+|++.||++.|+.+....+|+.++|.+.|.+.|
T Consensus       308 ---------------~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       308 ---------------ANPLM-DLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             ---------------hhHHH-HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence                           00111 22222222222333334445678899999999999999999999999999999999999


Q ss_pred             hcccchhh
Q 008060          517 AIGTSWTF  524 (579)
Q Consensus       517 ~~g~~~~~  524 (579)
                      ..||+..|
T Consensus       372 ~~g~~~~f  379 (379)
T TIGR00881       372 GFGWAGAF  379 (379)
T ss_pred             hhcccccC
Confidence            99987654

>PRK10504 putative transporter; Provisional

Probab=99.98  E-value=1.1e-29  Score=272.86  Aligned_cols=391  Identities=17%  Similarity=0.175  Sum_probs=277.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      .+..++++.++..++...+++.+|.+.+++|.+..+.   +++.+.+.++..++.+++|+++||+|||++++.+.++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM---HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            3455667788888899999999999999999988888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      +.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..++|.+++.+.+..+ ||+.
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~  166 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWI  166 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998877 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHh---------hcCCCc---hhhhHHHh-----hhhhhhhH
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRK---------VYPAHE---VETEIRDL-----KESVDKEI  253 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~-----~~~~~~~~  253 (579)
                      |++.....++..+. ....|+.+.   .+.+.+........         ......   ........     ........
T Consensus       167 f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (471)
T PRK10504        167 FLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLL  243 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99988766665555 344454431   11111111110000         000000   00000000     00000000


Q ss_pred             HhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008060          254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI  333 (579)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (579)
                      +++...++....+++|+|.++...+..++.     ..+.....++.|.|++...+.+....++...+..++.+++.++.+
T Consensus       244 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  318 (471)
T PRK10504        244 HARNNNRALFSLKLFRTRTFSLGLAGSFAG-----RIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVV  318 (471)
T ss_pred             HHhcCCCCccCHHHhcccchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            011111122234578888876544333322     223455666788888875555777788888888888888889999


Q ss_pred             HHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCc
Q 008060          334 YFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGF  413 (579)
Q Consensus       334 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (579)
                      ++.||++||+++..+..+..+...++......                                                
T Consensus       319 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------  350 (471)
T PRK10504        319 QVVNRFGYRRVLVATTLGLALVSLLFMLVALL------------------------------------------------  350 (471)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHhcccc------------------------------------------------
Confidence            99999999999888887777665555432110                                                


Q ss_pred             ccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhh
Q 008060          414 CASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCG  493 (579)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  493 (579)
                                                            +..+.......+.+.+.+.. .+.......+.+|++.+|.++
T Consensus       351 --------------------------------------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~  391 (471)
T PRK10504        351 --------------------------------------GWYYLLPFVLFLQGMVNSTR-FSSMNTLTLKDLPDNLASSGN  391 (471)
T ss_pred             --------------------------------------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHhccchH
Confidence                                                  00111112222222222222 233446777888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 008060          494 GIAATANWISNLIVAQSFLSLTQAIGTS  521 (579)
Q Consensus       494 gi~~~~~~~g~~i~~~~~g~~~~~~g~~  521 (579)
                      |+.++...+|..+++.+.|.+.+..|+.
T Consensus       392 ~~~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        392 SLLSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999998877653

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.98  E-value=7.4e-30  Score=266.45  Aligned_cols=284  Identities=18%  Similarity=0.175  Sum_probs=226.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      ..+.+..+..........+..|.+.+++|.++.+.   +++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   84 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV---QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS   84 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence            33444456667788888999999999999998888   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (579)
Q Consensus       114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~  193 (579)
                      ++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+..+ ||+.|+
T Consensus        85 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~  163 (385)
T TIGR00710        85 LGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFA  163 (385)
T ss_pred             HHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988776 999999


Q ss_pred             HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                      +.+++.++..+. ++..||+++..    +.                                ++.+......++.++++.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------------------------~~~~~~~~~~~~~~~~~~  207 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLPYE----AR--------------------------------IQISTYFETFLLLLKSKM  207 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCc----cc--------------------------------CCHHHHHHHHHHHHcCch
Confidence            988777666555 45566653210    00                                000001234556677777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      ++...+....     ..........+.|.++++..+.+....+.+.....++.+++.++.+++.||+++|+.+..+..+.
T Consensus       208 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~  282 (385)
T TIGR00710       208 FWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILF  282 (385)
T ss_pred             hHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7654433222     22234455667788887655556777888888888889999999999999999999988887777


Q ss_pred             HHHHHHHHHH
Q 008060          353 ILSLGVLSAV  362 (579)
Q Consensus       353 ~~~~~~~~~~  362 (579)
                      .++..++...
T Consensus       283 ~~~~~~~~~~  292 (385)
T TIGR00710       283 AVSAVLLEIT  292 (385)
T ss_pred             HHHHHHHHHH
Confidence            7766655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=5.3e-29  Score=262.32  Aligned_cols=375  Identities=16%  Similarity=0.073  Sum_probs=272.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh--hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~--~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      .++++.++..+......+.+|.+.+++|.+..+.  .+.|++.+++.++..++++++|+++||+|||++++.+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            3445566677777888899999999999886553  24588999999999999999999999999999999999999999


Q ss_pred             HHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060          113 AVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (579)
Q Consensus       113 ~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f  192 (579)
                      .++..++++++.+++.|++.|++.+ ..+....++.+++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~  175 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPVF  175 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHH
Confidence            9999999999999999999999865 567777889999999999999999999999999999999999988776 99999


Q ss_pred             HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      ++.+++.++..+. ++++||.++..    +.++                                 ..+..+..+.++++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------------------------~~~~~~~~~~~~~~  218 (408)
T PRK09874        176 FITASVLFLCFLVTLFCIRENFQPV----SKKE---------------------------------MLHMREVVTSLKNP  218 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcccc----cchh---------------------------------hhHHHHHHHhCcCC
Confidence            9988877666555 45556543200    0000                                 00011223445555


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR---TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVIS  348 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  348 (579)
                      +.+...+.....    ..........+.|.|..+.+.....   ..+.+.....++.+++.+..|+++||++||+.+..+
T Consensus       219 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~  294 (408)
T PRK09874        219 KLVLSLFVTTLI----IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITA  294 (408)
T ss_pred             chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence            554322221111    1122334445567776665443222   234455556677788889999999999999998887


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060          349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI  428 (579)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (579)
                      .....++.+.+....+                                                                
T Consensus       295 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  310 (408)
T PRK09874        295 LIFSVLLLIPMSFVQT----------------------------------------------------------------  310 (408)
T ss_pred             HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence            7766655544332211                                                                


Q ss_pred             cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060          429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA  508 (579)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~  508 (579)
                                               .+...+...+.+.+.+ ...+...+...+..|++.+|+.+|+.+....+|..++|
T Consensus       311 -------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp  364 (408)
T PRK09874        311 -------------------------PLQLGILRFLLGAADG-ALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP  364 (408)
T ss_pred             -------------------------HHHHHHHHHHHHhhhH-hhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence                                     1222222222222222 22344445667788889999999999999999999999


Q ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060          509 QSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV  542 (579)
Q Consensus       509 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (579)
                      .+.|.+.+..|++..|.+.+++.+++.++.++..
T Consensus       365 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        365 LMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988887765543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=1.2e-29  Score=262.36  Aligned_cols=354  Identities=11%  Similarity=0.001  Sum_probs=265.5

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll  115 (579)
                      +.++.++..+......+.+|.+..+++.+..+.   +++.+++.++..++++++|+++||+|||++++.+.++.+++.++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL---SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHH
Confidence            345566777778888888899999998887777   99999999999999999999999999999999999999888888


Q ss_pred             HHhcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          116 MAAAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       116 ~~~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                      .++..     +++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~  159 (365)
T TIGR00900        81 LPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKW  159 (365)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence            88877     999999999999999999999999999999999999999999999999999999999999988776 999


Q ss_pred             HHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhh
Q 008060          191 MLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLL  268 (579)
Q Consensus       191 ~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (579)
                      .|++.++..++..+..+.+  ||.++    +.+.+.              +           +   +..++.....++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~-----------~---~~~~~~~~~~~~~~  207 (365)
T TIGR00900       160 AIWVDAVGFAISALLIVSVRIPELAA----SEIQAL--------------S-----------N---AVLRDTREGIKFVL  207 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCC----cccccc--------------c-----------h---hHHHHHHhHHHHHH
Confidence            9998887666655544433  22211    000000              0           0   00000122345667


Q ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060          269 KTRTVRRGLIAGVGLQVFQQFVGINTVM-YYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (579)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (579)
                      |+|.++...+.......     ...... .+.|.+.++..+.+....+.......++.+++.++.+++.||.+||+.+..
T Consensus       208 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  282 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTG  282 (365)
T ss_pred             cCcHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            77777654443322221     222233 677888877545566777888888888899999999999999999998887


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccc
Q 008060          348 SLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACL  427 (579)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (579)
                      +..+..++...+....+                                                               
T Consensus       283 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  299 (365)
T TIGR00900       283 AIFVIGLAILVVGLTPP---------------------------------------------------------------  299 (365)
T ss_pred             HHHHHHHHHHHHHhhch---------------------------------------------------------------
Confidence            76666665554443211                                                               


Q ss_pred             ccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHH
Q 008060          428 ISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIV  507 (579)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~  507 (579)
                                               ..+...+..++...+.+ ...+...++..|..|++.||++.|+.++..+++..++
T Consensus       300 -------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g  353 (365)
T TIGR00900       300 -------------------------NFPLFLVLWFAIGVGYG-PINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLG  353 (365)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     01222333333333322 2345566888999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 008060          508 AQSFLSLTQAIG  519 (579)
Q Consensus       508 ~~~~g~~~~~~g  519 (579)
                      |.+.|.+.|..|
T Consensus       354 ~~~~g~l~~~~g  365 (365)
T TIGR00900       354 LILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHcC
Confidence            999999998754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.7e-29  Score=249.01  Aligned_cols=387  Identities=16%  Similarity=0.167  Sum_probs=308.0

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++.+.+.+....+...+..+..++++++.+.|.+++++|.+|.   +++.++..+...+..++.|.+.||+|.|++..++
T Consensus         9 k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~---~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s   85 (417)
T COG2223           9 KRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK---GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILS   85 (417)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH---HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHH
Confidence            3455667777778888888899999999999999999999999   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchh---hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          106 DFLFFVGAVIMAAAPNP---GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~---~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      .++..+-.+..+++.+.   +++++.+++.|++.+ .+.....+++.|||++++|.++|++. ..++|..+..++++.+.
T Consensus        86 ~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~  163 (417)
T COG2223          86 MLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA  163 (417)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence            99999999999987654   499999999999754 78888999999999999999999999 99999999999998887


Q ss_pred             cCcCc--chhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccc
Q 008060          183 RAPGT--WRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSS  259 (579)
Q Consensus       183 ~~~~~--Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (579)
                      ...+.  ||..-.+.....++..+. ++.+.+.|....                                     ..++.
T Consensus       164 ~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~-------------------------------------~~~~~  206 (417)
T COG2223         164 VAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRA-------------------------------------SVKPQ  206 (417)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhc-------------------------------------ccccc
Confidence            76653  999888888777776655 666666653100                                     00000


Q ss_pred             hhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060          260 EKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (579)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (579)
                      .+..++.++++++.|...+     .++..|.++..+..++|.|+++....+...++.........+.+.++++|+++||+
T Consensus       207 ~~~~~~~v~~~~~~W~lsl-----lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~  281 (417)
T COG2223         207 LPAQLKAVFSNKDTWLLSL-----LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI  281 (417)
T ss_pred             chhHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc
Confidence            1145666777888876444     34455667788888999999988888888888888888888999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCC
Q 008060          340 GRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSN  419 (579)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (579)
                      |.+|++...+..++++...+........+.                                                  
T Consensus       282 Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~--------------------------------------------------  311 (417)
T COG2223         282 GGRRVTLAVFVGMALAAALLSLFLTGFGHG--------------------------------------------------  311 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHccccccccC--------------------------------------------------
Confidence            999999999998888888777654322110                                                  


Q ss_pred             CCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH
Q 008060          420 KLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA  499 (579)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~  499 (579)
                                                      ...+..+........+.+.|- ...+-++..++|. +.|.+.|+....
T Consensus       312 --------------------------------~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~Ip~if~~-~~G~v~G~vga~  357 (417)
T COG2223         312 --------------------------------GSFVVFVAVFLALFVFAGLGN-GSVFKMIPVIFPK-ETGAVTGIVGAI  357 (417)
T ss_pred             --------------------------------cchHHHHHHHHHHHHHhccCc-chheeechHHHHh-hhhHHHHHHHHh
Confidence                                            012222332333333334443 3445778888865 569999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060          500 NWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       500 ~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      +.+|++.-|..+|...+.+| +...|+++..+.+++.++.+....
T Consensus       358 G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         358 GGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             ccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998 888999999999999888766543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=7.2e-29  Score=260.07  Aligned_cols=283  Identities=16%  Similarity=0.170  Sum_probs=219.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      ....+..+..........+.+|.+.+++|.+..+.   ++..+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~   82 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL---HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIAS   82 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHH
Confidence            34444555566666677788999999999988877   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (579)
Q Consensus       114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~  193 (579)
                      +++.++++++.+++.|+++|++.+...+....++.|++|+++|++++++.+....+|..++|.+++.+.+..+ ||+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~  161 (392)
T PRK10473         83 LLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFY  161 (392)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998877766 999999


Q ss_pred             HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                      +.+++.++..+. .+.+||+++.   +.+                                  ++.......++.++++.
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~~~~~~~~~  204 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETRPA---RAP----------------------------------AASSKPRENSESLLNRF  204 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCc---ccC----------------------------------CccchHHHHHHHHhCHH
Confidence            988777666555 5566776320   000                                  00001122345566666


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      ++...+.....     .........+.|.++++..+.+....+.......++.+++.++.+++.||++||+.+..+..+.
T Consensus       205 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        205 FLSRLVITTLS-----VTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            55443332221     1122334455677776554446666777777888889999999999999999999988888777


Q ss_pred             HHHHHHHHHH
Q 008060          353 ILSLGVLSAV  362 (579)
Q Consensus       353 ~~~~~~~~~~  362 (579)
                      .++.+++...
T Consensus       280 ~~~~~~~~~~  289 (392)
T PRK10473        280 LAAGITLALS  289 (392)
T ss_pred             HHHHHHHHHH
Confidence            7766665543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=7.1e-29  Score=258.14  Aligned_cols=363  Identities=16%  Similarity=0.134  Sum_probs=261.2

Q ss_pred             HHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH-HHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV-ADFLFFVGAVI  115 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~-~~~l~~i~~ll  115 (579)
                      +..+..++......+.+|. +.+++|.+..+.   |++.+.+.+...+.+++.|+++||+||||.++. +..+..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~   80 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI---GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL   80 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            3456677777788888886 578899988888   999999999999999999999999999887654 56666777788


Q ss_pred             HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh--hhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL--VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (579)
Q Consensus       116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~--~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~  193 (579)
                      ++++++++.+++.|+++|.+.+...|...++..|+.|+++|+++  .+....+.++|.++++.+++.+.+..+ ||+.|+
T Consensus        81 ~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~  159 (375)
T TIGR00899        81 FAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFL  159 (375)
T ss_pred             HHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHH
Confidence            89999999999999999988888888888889999887777654  577888889999999999999988777 999999


Q ss_pred             HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                      +.+++.++..+. ++++||.|++...+                                   +    ...+.++.++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~----~~~~~~~~~~~~~  200 (375)
T TIGR00899       160 TAALAFVLCGVLVWLFLPSYPRGAPGA-----------------------------------L----TRLEVRGLLASRD  200 (375)
T ss_pred             HHHHHHHHHHHHHHHhCCCcccCcccc-----------------------------------c----CcchhhhhhcCcc
Confidence            998877666655 45578875311000                                   0    0011223455555


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      ++...+.....     +........+.|.++++..+.+....+.......+..+++.++.|++.||++||+.+..+..+.
T Consensus       201 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~  275 (375)
T TIGR00899       201 TRLLFVACTLM-----WGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAG  275 (375)
T ss_pred             hHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHH
Confidence            54333222211     1123334456677876554546666676666666667888899999999999999887766554


Q ss_pred             HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060          353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST  432 (579)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (579)
                      .+....+....+                                                                    
T Consensus       276 ~~~~~~~~~~~~--------------------------------------------------------------------  287 (375)
T TIGR00899       276 VAFYTGLAADNS--------------------------------------------------------------------  287 (375)
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------------------
Confidence            444333322111                                                                    


Q ss_pred             cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHH
Q 008060          433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFL  512 (579)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g  512 (579)
                                           .|.......+...+.+. ..+....+..|..|++ +++++|+.+...++|..++|.+.|
T Consensus       288 ---------------------~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g  344 (375)
T TIGR00899       288 ---------------------LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGG  344 (375)
T ss_pred             ---------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 12222222222222221 2344456777888764 579999999999999999999999


Q ss_pred             HHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060          513 SLTQAIGTSWTFLIFGVISVAALLFVL  539 (579)
Q Consensus       513 ~~~~~~g~~~~~~~~~~~~~~~~~~~~  539 (579)
                      .+.+..|++..|++.+++.+++.++..
T Consensus       345 ~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       345 ILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999988888877653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=1.3e-28  Score=259.37  Aligned_cols=281  Identities=14%  Similarity=0.191  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      ....+.+..+...+......+.+|.+.++++.+....   ++..+++.++++++++++|+++||+|||++++.+.+++++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         17 FPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA---PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            3344455566677888999999999999999988888   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      +.++++++++++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||++++.+.+..+ ||+.
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~  172 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVL  172 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHH
Confidence            999999999999999999999999987777778889999999999999999999999999999999999887776 9999


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      |++.+++.++..+. ++.+||+++.   +++.                                ...+....++++++|+
T Consensus       173 f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~--------------------------------~~~~~~~~~~~~ll~~  217 (413)
T PRK15403        173 FAIIAVMGLIAFVGLLLAMPETVKR---GAVP--------------------------------FSAKSVLRDFRNVFRN  217 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCccc---cCCC--------------------------------CChHHHHHHHHHHHcC
Confidence            99999887776655 4567887430   0000                                0000012356677888


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      |.++...+....     .+........+.|.++++..+.+....++......++.+++..+.+++.++..+++.......
T Consensus       218 ~~~~~~~l~~~~-----~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~  292 (413)
T PRK15403        218 RLFLTGAATLSL-----SYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVP  292 (413)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence            888764443222     233445566678999988766677777888777777788888888887755544444333333


Q ss_pred             HHHHHH
Q 008060          351 GVILSL  356 (579)
Q Consensus       351 ~~~~~~  356 (579)
                      +..++.
T Consensus       293 ~~~ig~  298 (413)
T PRK15403        293 IQLVGL  298 (413)
T ss_pred             HHHHHH
Confidence            333333

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=2.1e-28  Score=257.32  Aligned_cols=374  Identities=15%  Similarity=0.060  Sum_probs=256.6

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM  116 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~  116 (579)
                      .++.++.........+.++.+.+++|.+..+.   +++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~   95 (402)
T TIGR00897        19 YIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS---ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAF   95 (402)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh---HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            33334444444444455666778899988888   999999999999999999999999999999999999998887655


Q ss_pred             H---h-cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHH-HHHHHHHHHhccCcCcchhH
Q 008060          117 A---A-APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ-FLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       117 ~---~-a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~-~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      .   + .++++.+++.|++.|++.+...+.....+.+++|+++|++++|+..++.++|. .+++.+++++.+..+ |+..
T Consensus        96 ~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~~  174 (402)
T TIGR00897        96 IVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMNT  174 (402)
T ss_pred             HHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHHH
Confidence            3   3 35788999999999999988888888889999999999999999999999997 589999998887766 7766


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      ++......++..++ .++.++.++..  +.+ +                              +++.++.....++++|+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~------------------------------~~~~~~~~~~~~~~~~~  221 (402)
T TIGR00897       175 LWSALAFVLTGGVIALFSNKDIFTPQ--HMQ-T------------------------------REKFSELGKAATILFTN  221 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCcc--ccc-C------------------------------CcchhhHHHHHHHHHcC
Confidence            55544433333333 33344332100  000 0                              00000011234567788


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV-ISL  349 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~  349 (579)
                      |.++...+..     +++....+...++.|.|+++.+. +....+.+.....++.+++.++.|+++||++||+.+. .+.
T Consensus       222 ~~~~~~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  295 (402)
T TIGR00897       222 PNVLLGGMVR-----IINTIGLFGFAVFLPMFVAELGF-STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGG  295 (402)
T ss_pred             hhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence            7775433322     22334556677889999987655 5555667777778889999999999999999888764 233


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccccc
Q 008060          350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLIS  429 (579)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (579)
                      ....++...+........+                                                             
T Consensus       296 l~~~~~~~~l~~~~~~~~~-------------------------------------------------------------  314 (402)
T TIGR00897       296 VGCGIFTLALYYIPQHFGH-------------------------------------------------------------  314 (402)
T ss_pred             HHHHHHHHHHHHHHHccCC-------------------------------------------------------------
Confidence            3333332222221110000                                                             


Q ss_pred             CcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060          430 NSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ  509 (579)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~  509 (579)
                                             ..+...+..++.+.+.+ +..+. .....|.. ++.||+++|+.+....+++.++|.
T Consensus       315 -----------------------~~~~~~~~~~~~G~~~~-~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       315 -----------------------SFAVALIIAIALGIFLA-GYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             -----------------------cHHHHHHHHHHHHHHHH-HHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHH
Confidence                                   01122222223332222 22333 34456664 468999999999999999999999


Q ss_pred             HHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          510 SFLSLTQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       510 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +.|.+.+..|+...+++.+++.+++.+...+
T Consensus       369 i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       369 IAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888887776544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=2e-28  Score=259.61  Aligned_cols=376  Identities=13%  Similarity=0.081  Sum_probs=267.3

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++.....+..+.+..+..++.....++..|.+++++|.++.+.   |++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~---gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g   97 (438)
T PRK10133         21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            3445556667777788889999999999999999999998888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          106 DFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       106 ~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      +++++++.+++   .++++++.+++.|+++|+|.+...+....++.|+.|+++|.+.+++.+..+.+|..+++.+++.+.
T Consensus        98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133         98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875   568999999999999999999999999999999887777777899999999999999999987654


Q ss_pred             c-C-----------------c-------CcchhHHHHhhHH-HHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCC
Q 008060          183 R-A-----------------P-------GTWRWMLGVAGIP-ALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPA  235 (579)
Q Consensus       183 ~-~-----------------~-------~~Wr~~f~i~~i~-~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~  235 (579)
                      . .                 .       .+||+.|+....+ .++..+. ...+||.+.    +++              
T Consensus       178 ~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~--------------  239 (438)
T PRK10133        178 LSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH--------------  239 (438)
T ss_pred             hcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc--------------
Confidence            1 0                 0       1366666544433 2222222 222343211    000              


Q ss_pred             CchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhHH
Q 008060          236 HEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIV-QLSGFASNRTA  314 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  314 (579)
                                       .+++......+.++++++|.++...+..++     ..........|.+.|+ ++..+.+...+
T Consensus       240 -----------------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~l~~~~~g~s~~~a  297 (438)
T PRK10133        240 -----------------SDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFA  297 (438)
T ss_pred             -----------------ccccccchhhhHHHHHhCchHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCCHHHH
Confidence                             000001112345677888887654433222     2233444555667774 55556678888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060          315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT  394 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (579)
                      ++......++.++|+++.+++.||+++|+++..+..+.++++++.... .                              
T Consensus       298 g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-~------------------------------  346 (438)
T PRK10133        298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-G------------------------------  346 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-C------------------------------
Confidence            888899999999999999999999999999887766665554433321 1                              


Q ss_pred             cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060          395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT  474 (579)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (579)
                                                                                 +...+..+.+.+.+. ..+.|
T Consensus       347 -----------------------------------------------------------~~~~~~~~~l~glg~-~~i~P  366 (438)
T PRK10133        347 -----------------------------------------------------------GHVGLIALTLCSAFM-SIQYP  366 (438)
T ss_pred             -----------------------------------------------------------ChHHHHHHHHHHHHH-HHHHH
Confidence                                                                       001122233333332 23456


Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHH
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLF  537 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~  537 (579)
                      ..++...+..|+ ..+++.++..+ ..+|+.++|.+.|.+.|..| .+..|++..+..+....+
T Consensus       367 ~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        367 TIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            666777887765 46788888864 55788999999999999887 677777655554444443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.97  E-value=2e-28  Score=251.43  Aligned_cols=346  Identities=28%  Similarity=0.337  Sum_probs=287.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l  114 (579)
                      .+.+..+...++....++..|.+.++++.+..+.   +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA---GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence            3456677788888889999999999999888887   9999999999999999999999999999999999999999999


Q ss_pred             HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060          115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (579)
Q Consensus       115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i  194 (579)
                      +..+.++++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.+++
T Consensus        80 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  158 (352)
T cd06174          80 LLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLI  158 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998876 9999999


Q ss_pred             hhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060          195 AGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR  274 (579)
Q Consensus       195 ~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (579)
                      .+++.++..+...+++                                                            |.++
T Consensus       159 ~~~~~~~~~~~~~~~~------------------------------------------------------------~~~~  178 (352)
T cd06174         159 LAILGLLLALLLLFLL------------------------------------------------------------RLLL  178 (352)
T ss_pred             HHHHHHHHHHHHHHHH------------------------------------------------------------HHHH
Confidence            8887777666554431                                                            1222


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-hhHHHHHHHH
Q 008060          275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKK-LLVISLSGVI  353 (579)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~  353 (579)
                      .     .....+...........+.|.+.++..+.+....+.......++.+++.++.+++.||++||+ .+..+..+..
T Consensus       179 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (352)
T cd06174         179 L-----LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAA  253 (352)
T ss_pred             H-----HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            1     112223334456677778888888774557777888888999999999999999999999999 8888888887


Q ss_pred             HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060          354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV  433 (579)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (579)
                      ++.+.+....+                                                                     
T Consensus       254 i~~~~~~~~~~---------------------------------------------------------------------  264 (352)
T cd06174         254 LGLLLLALAPS---------------------------------------------------------------------  264 (352)
T ss_pred             HHHHHHHHhcc---------------------------------------------------------------------
Confidence            77776654321                                                                     


Q ss_pred             ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060          434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS  513 (579)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~  513 (579)
                                          .+. .....+..........+....+..|..|++.|++.+|+.+....++..++|.+.+.
T Consensus       265 --------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~  323 (352)
T cd06174         265 --------------------LAL-LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL  323 (352)
T ss_pred             --------------------HHH-HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                122 22333333333334456777899999999999999999999999999999999999


Q ss_pred             HHHhcccchhhHHHHHHHHHHHHHhh
Q 008060          514 LTQAIGTSWTFLIFGVISVAALLFVL  539 (579)
Q Consensus       514 ~~~~~g~~~~~~~~~~~~~~~~~~~~  539 (579)
                      +.+..+++..+.+.+++.+++.++.+
T Consensus       324 l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         324 LLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999988877654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=4e-28  Score=255.22  Aligned_cols=352  Identities=17%  Similarity=0.125  Sum_probs=256.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll  115 (579)
                      +.+...+..+....+.|.+|.+.+++|.++.+.   +++.+++.++..++++++|+++||+|||+++..+.++.+++.++
T Consensus        11 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   87 (401)
T PRK11043         11 LAGLSMLGFLATDMYLPAFKAIQADLQTSASAV---SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG   87 (401)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence            333345555677788899999999999988888   99999999999999999999999999999999999999999999


Q ss_pred             HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (579)
Q Consensus       116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~  195 (579)
                      +.++++++.+++.|+++|++.+...+...+++.|++|+++|++..+.......+|..++|.+++++.+..+ ||+.|++.
T Consensus        88 ~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~  166 (401)
T PRK11043         88 MLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATL  166 (401)
T ss_pred             HHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Confidence            99999999999999999999888888888899999999999999999988999999999999999988877 99999999


Q ss_pred             hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (579)
Q Consensus       196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (579)
                      +++.++..+..++++|+++.    .+                                   ++.++.++++.++++.++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~----~~-----------------------------------~~~~~~~~~~~~~~~~~~~  207 (401)
T PRK11043        167 FAITLLLILPTLRLKPSKKA----RK-----------------------------------QSQDALTFKQLLKSKTYLG  207 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCc----cc-----------------------------------cchHHHHHHHHHcChhHHH
Confidence            88877776666566655320    00                                   0001234566777777654


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (579)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (579)
                      ..+.....     ...+.....+.|.++++.+. +....++......++.+++.++.+++.||+++|+.+........++
T Consensus       208 ~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~  281 (401)
T PRK11043        208 NVLIFAAC-----SAAFFAWLTGSPFILEQMGY-SPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVS  281 (401)
T ss_pred             HHHHHHHH-----HHHHHHHHHHhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            33322211     12334455677888887655 5566677767777788899999999999999988766555555444


Q ss_pred             HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060          356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD  435 (579)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (579)
                      .+.+.........                                                                   
T Consensus       282 ~~~~~~~~~~~~~-------------------------------------------------------------------  294 (401)
T PRK11043        282 VIAIWLASLLSHP-------------------------------------------------------------------  294 (401)
T ss_pred             HHHHHHHHHhccC-------------------------------------------------------------------
Confidence            4333222110000                                                                   


Q ss_pred             ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008060          436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT  515 (579)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~  515 (579)
                                       ..+..++...+...+.+ ...+.......+..| +.+|++.|+.++.+..++..++.+.|.+.
T Consensus       295 -----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        295 -----------------SLVPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             -----------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                             01112222222222222 223444445556665 57899999999999999999999999887


Q ss_pred             Hhcccch
Q 008060          516 QAIGTSW  522 (579)
Q Consensus       516 ~~~g~~~  522 (579)
                      +......
T Consensus       356 ~~~~~~~  362 (401)
T PRK11043        356 STPLLTT  362 (401)
T ss_pred             CCChhHH
Confidence            7544433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=2.7e-28  Score=254.86  Aligned_cols=363  Identities=18%  Similarity=0.161  Sum_probs=251.0

Q ss_pred             HHhhhhhhhhhhhhhhhhhhccc--ccchhhHHHHHH-----HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           41 LLFGYDTGVISGALLYIRDDFKS--VDRKTLLQESIV-----SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        41 ~~~~~~~~~~~~~lp~i~~~~~~--s~~~~~~~g~l~-----s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      +.+++++..+++..+.+.+++..  ++++.   +.+.     +...++..+++++.|+++||+|||++++.+.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~   79 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLV---ALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGT   79 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHH---HHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            45678888888888888887653  23333   3332     33444455789999999999999999999999999999


Q ss_pred             HHHHhcchhh--------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc--
Q 008060          114 VIMAAAPNPG--------ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR--  183 (579)
Q Consensus       114 ll~~~a~~~~--------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~--  183 (579)
                      +++++++++.        .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|.++++.++..+..  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~  159 (394)
T TIGR00883        80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLL  159 (394)
T ss_pred             HHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999875        488999999999999999999999999999999999999999999999999988876542  


Q ss_pred             ------CcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhc
Q 008060          184 ------APGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEG  257 (579)
Q Consensus       184 ------~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (579)
                            ..+ ||+.|++.+++.++..+....+||+|++...+                                   +++
T Consensus       160 ~~~~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~  203 (394)
T TIGR00883       160 GDDALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ-----------------------------------EKH  203 (394)
T ss_pred             CHHHhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-----------------------------------hcc
Confidence                  334 99999988776666555555667765421100                                   000


Q ss_pred             cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID  337 (579)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  337 (579)
                      +..+.+.++.++++....  .. .....+...........+.|.++++..+.+....+.......++.+++.++.|+++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  280 (394)
T TIGR00883       204 KKKRGPIRETLTKHRKPF--LL-GLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD  280 (394)
T ss_pred             ccccCCHHHHHHhchHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111233455555544111  11 112222333445666778899986655556667777778888889999999999999


Q ss_pred             hcCCchhhHHHHHHHHHHH-HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060          338 RTGRKKLLVISLSGVILSL-GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (579)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (579)
                      |++||+.+.....+..+.. ..+.......                                                  
T Consensus       281 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------  310 (394)
T TIGR00883       281 RIGRRPVLIIFTVLAALLAVPLLMALLDSG--------------------------------------------------  310 (394)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHHHhcCC--------------------------------------------------
Confidence            9999998765544443332 2222211100                                                  


Q ss_pred             CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH
Q 008060          417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA  496 (579)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~  496 (579)
                                                          ..+......++...+.+ ...+...++..|.+|++.|+++.|+.
T Consensus       311 ------------------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~  353 (394)
T TIGR00883       311 ------------------------------------SFTLFFFLVLGLALIGG-MYTGPMGSFLPELFPTEVRYTGASLA  353 (394)
T ss_pred             ------------------------------------chHHHHHHHHHHHHHHH-HHhhhHHHHHHHhCCccceeeEeeeh
Confidence                                                01222222233332222 23445568899999999999999985


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHH
Q 008060          497 -ATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISV  532 (579)
Q Consensus       497 -~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~  532 (579)
                       +....+|..++|.+.|.+.+..| ++..++..++..+
T Consensus       354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence             45566888899999999999988 6655555554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.8e-30  Score=259.99  Aligned_cols=280  Identities=18%  Similarity=0.253  Sum_probs=224.0

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      ..+..++.+.++++..+++.+|+..+..+.+.+++.||+++...   |++.+.+.+++.+++|+.|+++|||+||+++.+
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~---Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~v  103 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL---GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAV  103 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc---cchhHHHHHHHHHHHHHHHHHHhhcCcceEEee
Confidence            45567778889999999999999999999999999999999999   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          105 ADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      |.++|+++.+++++++.||+++++|.+.|+|.+.+.|+++++++|.+|..+|++++++++.+..+|..+|.+++..+...
T Consensus       104 G~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  104 GIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cCcchhHHHHhhHHHHHHHHHH-HhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhh
Q 008060          185 PGTWRWMLGVAGIPALLQFILM-LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN  263 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (579)
                      .+.|||.|+..++++++..++. ++.+|++|     +..++.+.                      +.+.........++
T Consensus       184 ~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~----------------------~~~~~~~~ts~~kD  236 (493)
T KOG1330|consen  184 TFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG----------------------ENKMVKPFTSVWKD  236 (493)
T ss_pred             ccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc----------------------CCcCCCCccchHHH
Confidence            7789999999999999988884 55566543     11111000                      00000112223455


Q ss_pred             HHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 008060          264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL---SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT  339 (579)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~  339 (579)
                      .+.+.|++.+....+......+.     ...+.+|.|.+...   ..+.+.....++..+...++.+|.+++|.++||+
T Consensus       237 l~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~  310 (493)
T KOG1330|consen  237 LKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKL  310 (493)
T ss_pred             HHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHH
Confidence            66666666665444443333332     34444555554432   1222445566777888889999999999999994

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.97  E-value=2.4e-29  Score=258.93  Aligned_cols=347  Identities=24%  Similarity=0.322  Sum_probs=257.0

Q ss_pred             HHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll  115 (579)
                      ++..+...++.....+.+| .+.+++|.+..+.   +++.+++.++..+++++.|+++||+|||+++..+.++.+++.++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI---GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH---HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHH
Confidence            4667778888888999999 8999999999888   99999999999999999999999999999999999999999777


Q ss_pred             HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (579)
Q Consensus       116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~  195 (579)
                      ..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+++.+.+..+ ||+.|++.
T Consensus        79 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~  157 (352)
T PF07690_consen   79 LAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLIS  157 (352)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHH
T ss_pred             hhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccc
Confidence            76768888999999999999999999999999999999999999999999999999999999999997776 99999999


Q ss_pred             hHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh-hHHHhhhcchh
Q 008060          196 GIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI-NLVKLLKTRTV  273 (579)
Q Consensus       196 ~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  273 (579)
                      +++.++..++ .++++++|+....+.+.++                           +  .+++.+.. .+++..+++.+
T Consensus       158 ~~~~~~~~il~~~~~~~~~~~~~~~~~~~~---------------------------~--~~~~~~~~~~~~~~~~~~~~  208 (352)
T PF07690_consen  158 AILSLIAAILFILFLPEPPPPRERESPKES---------------------------E--SKKPKPLKPGFKSLFKNPVL  208 (352)
T ss_dssp             HHHHHHHHHHHHCCC---STTTT--SSTTT---------------------------T----HHHCCCH-CTHHHHHHCC
T ss_pred             cchhhhhhhhHhhhhhhccccccccccccc---------------------------c--cccccccccccccccccchh
Confidence            9988887765 3445554321110000000                           0  00001111 24556666666


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-NRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      |...+     ..+...........+.|.|+++..+.+ ....+.......+.++++.++.+++.||+++|+.........
T Consensus       209 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (352)
T PF07690_consen  209 WILLI-----AFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL  283 (352)
T ss_dssp             HHHHH-----HHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhh-----hhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            51111     122223345567788888854444445 567777788888889999999999999999988877766666


Q ss_pred             HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060          353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST  432 (579)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (579)
                      .++.+.+.......                                                                  
T Consensus       284 ~~~~~~~~~~~~~~------------------------------------------------------------------  297 (352)
T PF07690_consen  284 ILGALGLLLLPFSS------------------------------------------------------------------  297 (352)
T ss_dssp             HHHHHHHCCSHHHC------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhh------------------------------------------------------------------
Confidence            66555554432210                                                                  


Q ss_pred             cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060          433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA  508 (579)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~  508 (579)
                                          ..+...+...+.+.+.+ ...+....+..|..|++.+|++.|+.++..+++++++|
T Consensus       298 --------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  298 --------------------SPVWLIIALFLIGFGFG-IVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHH-HHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                                01222333333333222 23556678999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.3e-29  Score=260.99  Aligned_cols=365  Identities=19%  Similarity=0.220  Sum_probs=276.2

Q ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhc
Q 008060           59 DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGV  136 (579)
Q Consensus        59 ~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~  136 (579)
                      .+++.+..+.   +++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++..++.  +++.+++.|+++|++.
T Consensus        66 ~~~~ws~~~k---~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   66 GEYDWSSTEK---GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             ceecCCHHHH---HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            4677777777   9999999999999999999999999999999999999999999998875  4568899999999999


Q ss_pred             hhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC-cCcchhHHHHhhHHHHHHHHHHHh-ccCChh
Q 008060          137 GMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-PGTWRWMLGVAGIPALLQFILMLL-LPESPR  214 (579)
Q Consensus       137 g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~-~~~Wr~~f~i~~i~~l~~~i~~~~-lpesp~  214 (579)
                      |..+|+...+.+.|.|++||++..++..++..+|.+++.+++|++.+. .| |++.|++.++++++..++|++ ..|+|.
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999998 65 999999999999999888655 456665


Q ss_pred             HHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Q 008060          215 WLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINT  294 (579)
Q Consensus       215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (579)
                      . .+.-..+|.+.                 +++...++  ..++..+.+++++++++.+|...+     ..++.+.+++.
T Consensus       222 ~-h~~is~~El~~-----------------I~~~k~~~--~~~~~~~vP~~~i~ts~~vwai~~-----~~f~~~~~~~~  276 (466)
T KOG2532|consen  222 K-HPNISEKELKY-----------------IEKGKSEA--HVKKKPPVPYKAILTSPPVWAIWI-----SAFGGNWGFYL  276 (466)
T ss_pred             c-CCCCCHHHHHH-----------------HHhccccc--ccCCCCCCCHHHHHcCHHHHHHHH-----HHHHHHHHHHH
Confidence            3 11111122111                 11111111  111114678999999999975444     34555667889


Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--------hh-hHHHHHHHHHHHHHHHHHhcc
Q 008060          295 VMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK--------KL-LVISLSGVILSLGVLSAVFHE  365 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~  365 (579)
                      +..|.|.|+++..+.+....+++++++.+...+..+++|.++||+.+|        |+ -.++....+++++.+.+... 
T Consensus       277 l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~-  355 (466)
T KOG2532|consen  277 LLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD-  355 (466)
T ss_pred             HHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC-
Confidence            999999999999999999999999999999999999999999998653        22 22344444444443333211 


Q ss_pred             cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY  445 (579)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (579)
                                                                                                      
T Consensus       356 --------------------------------------------------------------------------------  355 (466)
T KOG2532|consen  356 --------------------------------------------------------------------------------  355 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hcccch
Q 008060          446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ---AIGTSW  522 (579)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~---~~g~~~  522 (579)
                            ...+..++.+.+.....+... +..+....+. .+++.+..+|+.+....+.++++|.+.|.+.+   ...|+.
T Consensus       356 ------~~~~~a~~~l~~~~~~~g~~~-~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~  427 (466)
T KOG2532|consen  356 ------EHRLLAVILLTIAIGLSGFNI-SGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRI  427 (466)
T ss_pred             ------CcchHHHHHHHHHHHHcccch-hhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHH
Confidence                  112233333333333322221 1212222232 46788999999999999999999999999984   236999


Q ss_pred             hhHHHHHHHHHHHHHhhhh
Q 008060          523 TFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~  541 (579)
                      .|++.+++.+++.++..++
T Consensus       428 VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  428 VFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHhchheeEe
Confidence            9999999999998775544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.97  E-value=1.7e-27  Score=249.34  Aligned_cols=370  Identities=14%  Similarity=0.044  Sum_probs=257.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll  115 (579)
                      ++++.++..+.........+.+.++++.+..+.   +++.+.+.+++.++++++|+++||+|||++++++.++.+++.++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPDWSQ---PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            445566666655555566666788888877766   99999999999999999999999999999999999999998888


Q ss_pred             HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (579)
Q Consensus       116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~  195 (579)
                      +.++.+.   ++.|+++|++.+...|...+++.|++|+++|++++++......+|.++||.+++++.+.  .|+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~--~~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP--HAEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            7776664   78899999999999999999999999999999999999999999999999999999875  377777776


Q ss_pred             hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (579)
Q Consensus       196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (579)
                      +...++..+..+.+||+|++...++. ++ ..             ..+               ......+.++++|.++.
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~-------------~~~---------------~~~~~~~~l~~~~~~~~  209 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARRPGQSW-NP-IA-------------LLR---------------DFFHACRVLWRDKLGRF  209 (393)
T ss_pred             HHHHHHHHHHHhcCCCCcccccccCC-CH-HH-------------HHH---------------HHHHHHHHHHhCchhHH
Confidence            66555555556677876531100000 00 00             000               00112345667776654


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (579)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (579)
                      ..+.....     +.......+..|.++++..+.+....+++.....++.++++++.+++.||.++++.+..+.. ..+.
T Consensus       210 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~  283 (393)
T PRK11195        210 SLAGTTLF-----WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLV  283 (393)
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHH
Confidence            33322221     11223444555677776666677788899899999999999999999999998887766643 2222


Q ss_pred             HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060          356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD  435 (579)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (579)
                      ...+....+                                                                       
T Consensus       284 ~~~~~~~~~-----------------------------------------------------------------------  292 (393)
T PRK11195        284 VLLMALQHS-----------------------------------------------------------------------  292 (393)
T ss_pred             HHHHHHHhH-----------------------------------------------------------------------
Confidence            222221100                                                                       


Q ss_pred             ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc-chhhhHHHHHHHHHHHHHHHHHHHHH
Q 008060          436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF-RGVCGGIAATANWISNLIVAQSFLSL  514 (579)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~g~~~gi~~~~~~~g~~i~~~~~g~~  514 (579)
                                        .|...+...+.+.+.+.. .+...+...+..|++. +|.+.++.++..+++..++..+++.+
T Consensus       293 ------------------~~~~~~~~~~~G~~~g~~-~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        293 ------------------LLPAYPLLILIGALGGFF-VVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             ------------------HHHHHHHHHHHHHhhhhh-hhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence                              122223332333333322 2334456667655554 79999999999999999999998855


Q ss_pred             HHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          515 TQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       515 ~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                       +..|.+..+.+.+...++++.+.+.
T Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK11195        354 -VKLGVPVVAVIVGFGLLVALAMALL  378 (393)
T ss_pred             -HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence             6788887777766666655555433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=9.7e-28  Score=250.01  Aligned_cols=268  Identities=21%  Similarity=0.212  Sum_probs=212.1

Q ss_pred             hhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhH
Q 008060           45 YDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGA  124 (579)
Q Consensus        45 ~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~  124 (579)
                      +....+.|.+|.+.+++|.+..+.   +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV---QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            445667799999999999998888   99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          125 LITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       125 ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                      +++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|++.+++.++..+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~  160 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAA  160 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988776 99999998887776655


Q ss_pred             H-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHH
Q 008060          205 L-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGL  283 (579)
Q Consensus       205 ~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (579)
                      . .+++||+++..    ++++                              .+.+....+.++.++++..+...+.    
T Consensus       161 ~~~~~~~~~~~~~----~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----  202 (377)
T PRK11102        161 LVFFFIPETLPKE----RRQP------------------------------FHLRTTIRNFASLFRHKRVLGYMLA----  202 (377)
T ss_pred             HHHHhCCccCccc----ccCC------------------------------CChHHHHHHHHHHHcChHHHHHHHH----
Confidence            5 55667753210    0000                              0000012344566777766543322    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060          284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (579)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (579)
                       .+..+.+......+.|.++.+..+.+....+.......++.+++.++.+++.||+|||+.+..+..+..+.
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        203 -SGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIM  273 (377)
T ss_pred             -HHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence             12223344555556677666554446677788888888999999999999999999999988777654443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.96  E-value=2.2e-27  Score=255.14  Aligned_cols=375  Identities=15%  Similarity=0.049  Sum_probs=262.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchHH-HHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRTS-ILVADFLF  109 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~v-l~~~~~l~  109 (579)
                      +.+..+..++.....++.+|...++.|.+.++.   +.+ +.....+ ++.+++|+++||+     |||+. ++.+.+..
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i---g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTI---GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            444455666677788888899888888877777   665 3334443 6899999999999     99986 66777777


Q ss_pred             HHHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC-c
Q 008060          110 FVGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA-P  185 (579)
Q Consensus       110 ~i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~-~  185 (579)
                      +++..+.++.   ++++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+. .
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777777775   47888999999999999999999999999999999999999999999999999999999999883 4


Q ss_pred             CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060          186 GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (579)
Q Consensus       186 ~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (579)
                      + ||..|++.+++.++..+..+++||+++..   .+ ++                          .    .++....+++
T Consensus       172 G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~--------------------------~----~~~~~~~~l~  216 (491)
T PRK11010        172 G-WQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK--------------------------T----LEQAVVAPLR  216 (491)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc--------------------------c----hhhhHHHHHH
Confidence            5 99999999987777766666678764210   00 00                          0    0000122455


Q ss_pred             HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                      +.++++..+...+..+..     ..+......+.+.|+.+..+.+....+... ....++.+++.+++|+++||+++|+.
T Consensus       217 ~~~~~~~~~~~ll~~~l~-----~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~  291 (491)
T PRK11010        217 DFFGRNNAWLILLLIVLY-----KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA  291 (491)
T ss_pred             HHHcCcCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            666666655433332221     122333344556666443344666666665 45567889999999999999999888


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      +..+..+..++.+.+........                                                         
T Consensus       292 l~i~~~l~~l~~l~~~~l~~~~~---------------------------------------------------------  314 (491)
T PRK11010        292 LMIFGILQGVSNAGYWLLSITDK---------------------------------------------------------  314 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc---------------------------------------------------------
Confidence            77665555544433322111000                                                         


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISN  504 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~  504 (579)
                                                  ..+.......+....++.+. +..+++..++.+++.+++..|+.+....+|+
T Consensus       315 ----------------------------~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~  365 (491)
T PRK11010        315 ----------------------------NLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGR  365 (491)
T ss_pred             ----------------------------cHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence                                        01111212222122222222 2335777888899999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          505 LIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       505 ~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      .+++.+.|.+.|..||...|.+.+++++++.+..+..
T Consensus       366 ~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        366 VYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887776543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.96  E-value=4.2e-27  Score=247.01  Aligned_cols=358  Identities=15%  Similarity=0.107  Sum_probs=252.8

Q ss_pred             HHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           40 GLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      .++.........+.++ ++.+++|.+..+.   |++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         19 NMLVVLGFFVVFPLISIRFVDQLGWAAVMV---GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445555 4678899988887   99999999999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHH
Q 008060          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (579)
Q Consensus       119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~  198 (579)
                      +++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++++. ..+ ||+.|++.++.
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~  173 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVL  173 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHH
Confidence            9999999999999999999888999999999999999999999999999999999999999998 444 99999998877


Q ss_pred             HHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHH
Q 008060          199 ALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL  277 (579)
Q Consensus       199 ~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (579)
                      .++..++ .++.||.+.     .+                                  .+++.+.++++.+++|.++...
T Consensus       174 ~~~~~i~~~~~~~~~~~-----~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~  214 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKL-----ST----------------------------------VRTPVREGMTRVLRDKRFVTYV  214 (400)
T ss_pred             HHHHHHHHHHhCCcccc-----cc----------------------------------cchhhHHHHHHHHcCchHHHHH
Confidence            6665544 444554210     00                                  0000112455667777765433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhHHHHHHHHHHH
Q 008060          278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLSGVILSL  356 (579)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~  356 (579)
                      +.....     +........+.|.++++.++. ....+.+.....++...+....+++.| |++.++.+..++.+..++.
T Consensus       215 ~~~~~~-----~~~~~~~~~~~p~~~~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        215 LTLTGY-----YMLAVQVMLMLPIMVNDIAGS-PSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHH-----HHHHHHHHHhhhhhHHhhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            322111     111223345788998887774 455566656555555555555566655 4665666666666666665


Q ss_pred             HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060          357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL  436 (579)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (579)
                      .++....+                                                                        
T Consensus       289 ~~l~~~~~------------------------------------------------------------------------  296 (400)
T PRK11646        289 FPIGMVSN------------------------------------------------------------------------  296 (400)
T ss_pred             HHHHHhhh------------------------------------------------------------------------
Confidence            54443211                                                                        


Q ss_pred             cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ  516 (579)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~  516 (579)
                                       .+...+...++..+.. ...+...++..+..|++.||+++|+.+....+|..++|.+.|.+.|
T Consensus       297 -----------------~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        297 -----------------LQQLFTLICLFYIGSI-IAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             -----------------HHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence                             1112222222222222 2234556788899999999999999999999999999999999998


Q ss_pred             hcc----cchhhHHHHHHHHHHHHH
Q 008060          517 AIG----TSWTFLIFGVISVAALLF  537 (579)
Q Consensus       517 ~~g----~~~~~~~~~~~~~~~~~~  537 (579)
                      ..+    ....+...+++.+++.+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        359 LGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHhhcCCcchHHHHHHHHHHHHHHH
Confidence            753    344555555555555444

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.5e-28  Score=258.54  Aligned_cols=298  Identities=21%  Similarity=0.195  Sum_probs=229.8

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      +..+.++..+++.++....+...++. .+..+.+|.+....+.   +.+.++++++++++++++|.+.||++..+.+...
T Consensus        41 K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l---~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~  117 (495)
T KOG2533|consen   41 KLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL---GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVS  117 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh---hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHH
Confidence            34556666777777777777765433 3334668888888888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc--
Q 008060          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR--  183 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~--  183 (579)
                      .+++++..++....+|++.+++.|++.|+.+++.+|....+++.|+.+++|++.++++.+..++|.++|.+++..+..  
T Consensus       118 ~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  118 GILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence            999999998888899999999999999999999999999999999999999999999999999999999999998643  


Q ss_pred             ----CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhcc
Q 008060          184 ----APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGS  258 (579)
Q Consensus       184 ----~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (579)
                          .. +|||.|++.+++.++..++ ++++|+.|..-.-..++|+ .-..++             .++...  ....++
T Consensus       198 ~~~~~~-gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek-~~~~~~-------------~~~~~~--~~~~~~  260 (495)
T KOG2533|consen  198 GSGGLA-GWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEK-ELVVER-------------LRESPS--GGIENK  260 (495)
T ss_pred             CCCCcC-CceeehhHHHHHHHHHHheEEEEecCChhhccccchHHH-HHHHHH-------------HHhccC--CCcccc
Confidence                23 5999999999988888776 6778998851100111110 000000             000000  001111


Q ss_pred             chhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060          259 SEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (579)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (579)
                      .++..+++.+++|.+|...+..++     .....+++.+|+|.++.+..+.+..++..+..+..++++++.+++|+++||
T Consensus       261 ~~~~~~~~a~~dp~vw~~~l~~~~-----~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  261 FKWKGFKEALKDPGVWPFSLCYFF-----LKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             cCHHHHHHHHhchhHHHHHHHHHH-----HhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            456789999999999865554433     344567788999999998555678888999999999999999999999999


Q ss_pred             c----CCchhhHHHH
Q 008060          339 T----GRKKLLVISL  349 (579)
Q Consensus       339 ~----~~~~~~~~~~  349 (579)
                      .    .+|.......
T Consensus       336 ~~~~~~~~~~~~~~~  350 (495)
T KOG2533|consen  336 LKTIFARRLLFIVFL  350 (495)
T ss_pred             HhhhHHHHHHHHHHH
Confidence            4    4444444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.96  E-value=7.8e-27  Score=244.84  Aligned_cols=353  Identities=17%  Similarity=0.100  Sum_probs=252.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      ++.+....+......+......+.+|.+.+++|.+..+.   +++.+++.+++.++++++|+++||+|||++++++.++.
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV---QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            334444444445556677788889999999999998888   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      .++.++..++++++.+++.|++.|++.+...+....++.|++++++|+++.++...+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999998888888899999999999999999999999999999999999988776 99


Q ss_pred             hHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhh
Q 008060          190 WMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLL  268 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (579)
                      +.|++.++..++..+. .+++||+++..    + +                                 ++..+..+++.+
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~-~---------------------------------~~~~~~~~~~~~  204 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPAD----A-R---------------------------------RTRVLASYRTLL  204 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCccc----c-c---------------------------------hhHHHHHHHHHH
Confidence            9999988766655444 55677764210    0 0                                 000123455667


Q ss_pred             hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060          269 KTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVIS  348 (579)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  348 (579)
                      ++|.++...+..+.     .+.+......+.+.++++..+.+....++......++.+++..+.+++.||.+++..  ..
T Consensus       205 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~  277 (394)
T PRK11652        205 SNRRFNCYLLMLIG-----TLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QS  277 (394)
T ss_pred             cChHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence            77766554432221     122344445556777777555566677777777778888888999999999873322  22


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060          349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI  428 (579)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (579)
                      .....++.+++........                                                             
T Consensus       278 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  296 (394)
T PRK11652        278 VICCLLAGLLMWIPGWFGV-------------------------------------------------------------  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcc-------------------------------------------------------------
Confidence            2222222222211110000                                                             


Q ss_pred             cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060          429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA  508 (579)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~  508 (579)
                                             ...|.......+...+.+. ..+...+...|.+| +.+|++.++.+....+|+++++
T Consensus       297 -----------------------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~  351 (394)
T PRK11652        297 -----------------------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAA  351 (394)
T ss_pred             -----------------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHH
Confidence                                   0122223333333333332 24455566677776 5789999999999999999999


Q ss_pred             HHHHHHHHh
Q 008060          509 QSFLSLTQA  517 (579)
Q Consensus       509 ~~~g~~~~~  517 (579)
                      .+.+.+.+.
T Consensus       352 ~~~~~~~~~  360 (394)
T PRK11652        352 LLSAMLPQT  360 (394)
T ss_pred             HHHHHccCC
Confidence            988877654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.96  E-value=5.9e-27  Score=246.21  Aligned_cols=360  Identities=14%  Similarity=0.076  Sum_probs=260.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      +..+++..+..++.....++++|.+++++|.+..+.   |++.+.+.+++.+++++.|++.||+|||++++.++++++++
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~---g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA---ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            456667778888888999999999999999998888   99999999999999999999999999999999999999999


Q ss_pred             HHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc----
Q 008060          113 AVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP----  185 (579)
Q Consensus       113 ~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~----  185 (579)
                      .+++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+....    
T Consensus        82 ~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~  161 (410)
T TIGR00885        82 AFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQ  161 (410)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            988644   4689999999999999999999999999999999999999999999999999999999998774321    


Q ss_pred             ---------------------CcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhH
Q 008060          186 ---------------------GTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEI  242 (579)
Q Consensus       186 ---------------------~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (579)
                                           .+||+.|++.+++.++..+.+.+.  ||.++        +                   
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~-------------------  214 (410)
T TIGR00885       162 SQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------S-------------------  214 (410)
T ss_pred             hhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------c-------------------
Confidence                                 149999999888766655444333  32110        0                   


Q ss_pred             HHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHHHHHHHH
Q 008060          243 RDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRTALLLSLVT  321 (579)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  321 (579)
                              +   +++.....+..+++|+|.++...+..++     ..........+++.|.++.+ ..+...+.......
T Consensus       215 --------~---~~~~~~~~~~~~~~~~~~~~~~~l~~f~-----yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~  278 (410)
T TIGR00885       215 --------D---AKQISFSASLSRLARIRHYREGVIAQFF-----YVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGA  278 (410)
T ss_pred             --------c---cccccchhhHHHHHhChhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence                    0   0000111234466777777654433222     12223345567788876543 22333333344445


Q ss_pred             HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060          322 SGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM  401 (579)
Q Consensus       322 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (579)
                      .....+|+++++++.||+++|+++.+...+..++.++.....                                      
T Consensus       279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~--------------------------------------  320 (410)
T TIGR00885       279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG--------------------------------------  320 (410)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC--------------------------------------
Confidence            567899999999999999999988777766666655554421                                      


Q ss_pred             ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeec
Q 008060          402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNS  481 (579)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (579)
                                                                          +...++.+.+...+.+ .++|..++...
T Consensus       321 ----------------------------------------------------~~~~~~~l~~~glf~s-~~fp~i~sl~~  347 (410)
T TIGR00885       321 ----------------------------------------------------GHVGLYCLTLCSAFMS-LMFPTIYGIAL  347 (410)
T ss_pred             ----------------------------------------------------ChHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence                                                                1112333333343333 34577778888


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchhhHHHHHHH
Q 008060          482 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI------GTSWTFLIFGVIS  531 (579)
Q Consensus       482 ~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~~~~~  531 (579)
                      +..+++.+..+.++..+.  +|+++.|.+.|.+.|..      +++.+|++..++.
T Consensus       348 ~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~  401 (410)
T TIGR00885       348 KGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCF  401 (410)
T ss_pred             hhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHHH
Confidence            888877655455555543  99999999999999954      4666776544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=99.96  E-value=4.1e-27  Score=246.68  Aligned_cols=363  Identities=11%  Similarity=0.079  Sum_probs=259.6

Q ss_pred             HHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM  116 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~  116 (579)
                      +..++.........+.+| .+.+++|.+..+.   |++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI---GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            444555566666666665 4667899998888   999999999999999999999999999999999999999999999


Q ss_pred             HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060          117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG  196 (579)
Q Consensus       117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~  196 (579)
                      +++++++.+++.|++.|.+.+...+....+..|.+|+++|++++++.....++|.+++|.+++++.+ .+ ||..|++.+
T Consensus        91 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~  168 (395)
T PRK10054         91 PLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAA  168 (395)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHH
Confidence            9999999999999999988888888889999999999999999999999999999999999999875 44 999999888


Q ss_pred             HHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060          197 IPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (579)
Q Consensus       197 i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (579)
                      ++.++..+. .+++||+++.    ++.+                               +   .+..+.++.+|+|.++.
T Consensus       169 ~~~~i~~i~~~~~~~~~~~~----~~~~-------------------------------~---~~~~~~~~~~~~~~~~~  210 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRSEKA----IATE-------------------------------T---GSVWSPSVLLQDKALLW  210 (395)
T ss_pred             HHHHHHHHHHHHHHhccccc----cccc-------------------------------h---hhhhhhhhhccCceehH
Confidence            777666544 4445554210    0000                               0   00112356678887766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG--FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (579)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (579)
                      ..+..++....     ......+.+.+.....  ..+....+.......+.........|++.||.++|+.+..++.+..
T Consensus       211 ~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  285 (395)
T PRK10054        211 FTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFV  285 (395)
T ss_pred             HHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHH
Confidence            55443332221     2222234444443221  2233444555555556566667788999999999999888887777


Q ss_pred             HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060          354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV  433 (579)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (579)
                      ++...+....+                                                                     
T Consensus       286 ~~~~~~~~~~~---------------------------------------------------------------------  296 (395)
T PRK10054        286 IGLVGFIFSGN---------------------------------------------------------------------  296 (395)
T ss_pred             HHHHHHHHcch---------------------------------------------------------------------
Confidence            77665543211                                                                     


Q ss_pred             ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060          434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS  513 (579)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~  513 (579)
                                         ..+..++...++..+. ....|...+.+.+..|++.|++..+..+ ..++|.+++|.+.|.
T Consensus       297 -------------------~~~~~~~~~~~~~~g~-~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        297 -------------------SLLLWGMSAAVFTVGE-IIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             -------------------HHHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence                               0111122222222222 1223455677888899999999988765 677999999999999


Q ss_pred             HHHhcccchhhHHHHHHHHHHHHHh
Q 008060          514 LTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       514 ~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      +.|..|+...|++.+++..+..++.
T Consensus       356 l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        356 ILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             HHHHcChhhHHHHHHHHHHHHHHHH
Confidence            9999998888887776666665544

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=3.1e-26  Score=240.13  Aligned_cols=364  Identities=14%  Similarity=0.099  Sum_probs=240.6

Q ss_pred             HHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHH-HHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSI-LVADFLFFVGAV  114 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl-~~~~~l~~i~~l  114 (579)
                      +..++..+......|.+|. +.+++|.+..+.   |++.+...+ ++.++++++++ +||+||||.+ ..+.++.+++..
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPAMV---GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            3355566666666676665 678899988887   998776544 66666655666 9999999875 456666677788


Q ss_pred             HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccch--hhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHH
Q 008060          115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRG--ALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWML  192 (579)
Q Consensus       115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~--~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f  192 (579)
                      +.+++++++.+++.+.+.|...+...|....+..|+.++++|.  ...++.+.+.++|.+++|++++++.+..+ ||..|
T Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f  176 (393)
T PRK15011         98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY  176 (393)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence            8889999998877666555555667888888888888766553  44578888999999999999999988777 99999


Q ss_pred             HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      ++.++.+++..+. ++++||.++.   +++.+                               .+    ....   .+++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------------~~----~~~~---~~~~  215 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKE---LPLAT-------------------------------GT----LEAP---RRNR  215 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCC---Ccccc-------------------------------cc----cccc---cccc
Confidence            9998877766655 4557776420   00000                               00    0000   0111


Q ss_pred             h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          272 T-VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       272 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      + .+......     ...+........+.|.|+++..+.+....+.+.....+..+++.++.|+++||++||+.+..+..
T Consensus       216 ~~~~~~~~~~-----~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~  290 (393)
T PRK15011        216 RDTLLLFVIC-----TLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAV  290 (393)
T ss_pred             ccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            1 11111111     11122334455678888876555566666766666667788899999999999999988766655


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN  430 (579)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (579)
                      ...+....+... +                                                                  
T Consensus       291 ~~~~~~~~~~~~-~------------------------------------------------------------------  303 (393)
T PRK15011        291 AGVCFYAGMLMA-H------------------------------------------------------------------  303 (393)
T ss_pred             HHHHHHHHHHHH-h------------------------------------------------------------------
Confidence            444433222211 1                                                                  


Q ss_pred             cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060          431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS  510 (579)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~  510 (579)
                                            ..+..+....+.....+.. .+....+..|..|+ .+|+++++.+...++|..++|.+
T Consensus       304 ----------------------~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l  359 (393)
T PRK15011        304 ----------------------SPAILLGLQLLNAIYIGIL-GGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL  359 (393)
T ss_pred             ----------------------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH
Confidence                                  0111122222111121111 11223556788875 58999999999999999999999


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHHhhhhccC
Q 008060          511 FLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPE  544 (579)
Q Consensus       511 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (579)
                      .|.+.+..|++..|.+.+++.+++.+..+ ..||
T Consensus       360 ~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~  392 (393)
T PRK15011        360 AGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKD  392 (393)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcC
Confidence            99999999999999888888887776654 3454

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=1.5e-26  Score=241.60  Aligned_cols=361  Identities=14%  Similarity=0.001  Sum_probs=263.9

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHH----HHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSI----LVADFLFFV  111 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl----~~~~~l~~i  111 (579)
                      +.+.++..++......|.+|.+.+++|.+..+.   |++.+++.+...++++++|+++||+|||...    ..+..+..+
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i---g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI---GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            445566777777888999999999999988888   9999999999999999999999999985433    222222222


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                        ..+..+++++.+++.|+++|.+.+...|...++..++  .++|+++.+......++|.+++|++++++.+..+ ||..
T Consensus        86 --~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~  160 (382)
T TIGR00902        86 --AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNI  160 (382)
T ss_pred             --HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHH
Confidence              2444678999999999999999888889888887665  4678999999999999999999999999999887 9999


Q ss_pred             HHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          192 LGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       192 f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      |++.++..++.. ..+.++|+++.   +++ ++                              +++.....+..+++|+|
T Consensus       161 f~~~~~~~~~~~-~~~~~~~~~~~---~~~-~~------------------------------~~~~~~~~~~~~~l~~~  205 (382)
T TIGR00902       161 LAILTAGLAFML-IGFLIKPTIPP---KDA-IP------------------------------EDESQGDSAFIALLKNP  205 (382)
T ss_pred             HHHHHHHHHHHH-HHHHcCCCCCC---Ccc-cc------------------------------ccccccchhHHHHHcCh
Confidence            988765533333 33334443210   000 00                              00001123467888988


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (579)
                      +++...+...+.     .........+.|.++++.+. +....++......++.+++.++.+++.||+++|+.+.++.+.
T Consensus       206 ~~~~~l~~~~l~-----~~~~~~~~~~~~~~l~~~g~-s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~  279 (382)
T TIGR00902       206 MNLRFLAAVCLI-----QGAHAAYYGFSAIYWQAAGI-SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIA  279 (382)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHH
Confidence            887655443332     23455666678889888655 556667777788888999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS  431 (579)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (579)
                      ..+...++....+                                                                   
T Consensus       280 ~~~~~~~~~~~~~-------------------------------------------------------------------  292 (382)
T TIGR00902       280 CVGRWAIIGAIEA-------------------------------------------------------------------  292 (382)
T ss_pred             HHHHHHHHHhHhh-------------------------------------------------------------------
Confidence            8888777654321                                                                   


Q ss_pred             ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-HHHHHHHHHHHHH
Q 008060          432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA-TANWISNLIVAQS  510 (579)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~-~~~~~g~~i~~~~  510 (579)
                                            .|..+..-.+-...++.. .+....++++. |++.|+++.++.+ ....+|..++|.+
T Consensus       293 ----------------------~~~~~~~q~l~g~~~~~~-~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~  348 (382)
T TIGR00902       293 ----------------------FPLIFLLQILHCGTFAVC-HLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF  348 (382)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  222233333444344332 23344677777 8889999999986 4567999999999


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060          511 FLSLTQAIGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       511 ~g~~~~~~g~~~~~~~~~~~~~~~~~~  537 (579)
                      .|.+.|..|+ ..|+..++++++++++
T Consensus       349 ~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       349 AGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999986 6788888888877554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=4.5e-27  Score=243.81  Aligned_cols=293  Identities=17%  Similarity=0.132  Sum_probs=213.7

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      ..+++.+........+++..|. +.+++|.+..+.   +++.+++.+++.+++++.|+++||+|||++++++.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL---GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh---hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4566667777888889999995 999999998888   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC--------
Q 008060          114 VIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA--------  184 (579)
Q Consensus       114 ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~--------  184 (579)
                      +++++++ +++.+++.|+++|++.+ ..+....++.|++|+++|++++++......+|..+++.+++.+...        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  160 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLP  160 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999 99999999999999866 4566788999999999999999999988888888887777665531        


Q ss_pred             -cCcchhHH-HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060          185 -PGTWRWML-GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK  261 (579)
Q Consensus       185 -~~~Wr~~f-~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                       ..+||+.| +..+++.++..++ ..+.+|+|+..    +.++ +.     ...+.        .       ...++...
T Consensus       161 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~-----~~~~~--------~-------~~~~~~~~  215 (366)
T TIGR00886       161 AHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----PATG-KL-----SFKGA--------R-------WSVGTGAL  215 (366)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----ccch-hc-----ccccc--------c-------ccccchhH
Confidence             11499999 4445444443333 45566665311    0000 00     00000        0       00000011


Q ss_pred             hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060          262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (579)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (579)
                      ....+.+++|.++...+..     +...........+.|.|+++..+.+...++.+.....+.+++++++.|+++||++|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~  290 (366)
T TIGR00886       216 GDQLKVFRDRHTWILALLY-----SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG  290 (366)
T ss_pred             HHHHHHHhccchhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence            2455677777765433322     22223345566778889887655567777877788888899999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHH
Q 008060          342 KKLLVISLSGVILSLGVLSA  361 (579)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~  361 (579)
                      |+.+..+......+..++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~  310 (366)
T TIGR00886       291 ARKLLMSFLGVAMGAFLVVL  310 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHh
Confidence            98887777666665555543

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=7.8e-27  Score=241.27  Aligned_cols=337  Identities=16%  Similarity=0.170  Sum_probs=243.6

Q ss_pred             HhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch
Q 008060           42 LFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN  121 (579)
Q Consensus        42 ~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~  121 (579)
                      .........++.+|.+.+++|.+..+.   +++.+++.+++.+++++.|+++||+|||+++.++.++..++.+.+ .+++
T Consensus        11 ~~~~~~~~~~~~lp~l~~~~~~s~~~~---g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        11 NLRPALTSVGPLLPQIRSALGMSFSVA---GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             cccCccccCcccHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            333344667899999999999998888   999999999999999999999999999999999999888888877 7889


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHH
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPAL  200 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l  200 (579)
                      ++.+++.|++.|++.+...+....++.|++| ++|++++++...+.++|..+++.+++.+.+..+ +||+.|.+.++..+
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999888888888999987 579999999999999999999999988876543 39999887776544


Q ss_pred             HHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHH
Q 008060          201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG  280 (579)
Q Consensus       201 ~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (579)
                      +..  ..++|+.++.   + +                                 ++++..+...++.+|+|.++...+..
T Consensus       166 ~~~--~~~~~~~~~~---~-~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (355)
T TIGR00896       166 LAL--LAWIPQVRRR---V-A---------------------------------ANQTTTRLTPVRIWRSPLAWQVTVFF  206 (355)
T ss_pred             HHH--HHHhhhhccc---c-C---------------------------------CCCCCCCCCCchhhcCHhHHHHHHHH
Confidence            332  2233443210   0 0                                 00000012344567777665433221


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhHHHHHHHHHHHHHH
Q 008060          281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG-RKKLLVISLSGVILSLGVL  359 (579)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~  359 (579)
                           +.....+.....|.|.++++.+. +....+.......++.++++++.|++.||++ ||+.+..+..+..++.+.+
T Consensus       207 -----~~~~~~~~~~~~~lp~~~~~~g~-~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  280 (355)
T TIGR00896       207 -----GLQSGLYYSLIGWLPAILISHGA-SAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL  280 (355)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH
Confidence                 22233455667788999987655 6667788888889999999999999999994 5666666666666666555


Q ss_pred             HHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccc
Q 008060          360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHD  439 (579)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (579)
                      .....                                                                           
T Consensus       281 ~~~~~---------------------------------------------------------------------------  285 (355)
T TIGR00896       281 LFAPM---------------------------------------------------------------------------  285 (355)
T ss_pred             HHhhh---------------------------------------------------------------------------
Confidence            43311                                                                           


Q ss_pred             ccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc-ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060          440 ESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE-IYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~  518 (579)
                                    .+. .....++..+. ....+...+...+ ..+++.++...++.+..++++++++|.+.|.+.|..
T Consensus       286 --------------~~~-~~~~~l~g~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       286 --------------HGL-WAWALVLGLGQ-GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             --------------hHH-HHHHHHHHHhh-hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          001 11222222222 1223333344443 344567789999999999999999999999999988


Q ss_pred             c
Q 008060          519 G  519 (579)
Q Consensus       519 g  519 (579)
                      |
T Consensus       350 g  350 (355)
T TIGR00896       350 G  350 (355)
T ss_pred             c
Confidence            7

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=2.6e-26  Score=252.55  Aligned_cols=307  Identities=15%  Similarity=0.126  Sum_probs=225.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      .++.+++..+...+.....+..++.+.++|+++..+.   |++.+.+.++++++.++.|++.||+|||+.+.++++++++
T Consensus        34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~---G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS---GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc---eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            3344556777778888999999999999999999998   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc---------------------------------------------------hhhHHHHHHHHHHhhchhhh
Q 008060          112 GAVIMAAAP---------------------------------------------------NPGALITGRVFVGLGVGMAS  140 (579)
Q Consensus       112 ~~ll~~~a~---------------------------------------------------~~~~ll~~R~l~Gig~g~~~  140 (579)
                      +++++++.+                                                   .+..++++|+++|+|.+..+
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999987752                                                   25677899999999999999


Q ss_pred             hhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc---------------------CcchhHHHHhhHHH
Q 008060          141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPA  199 (579)
Q Consensus       141 ~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~---------------------~~Wr~~f~i~~i~~  199 (579)
                      +...+++.|++|+++|+++++++..+..+|.++|+++++++.+.+                     +.||..|++.+++.
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~  270 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA  270 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887543                     12677788888877


Q ss_pred             HHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060          200 LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA  279 (579)
Q Consensus       200 l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (579)
                      ++..+.++++|++.+....+.+.+..++  +... ...         ...........++.....++++++|.++...+.
T Consensus       271 ~l~~v~l~~~p~~lp~~~~~~~~~~~~~--~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~  338 (633)
T TIGR00805       271 LLTSIPFFFFPKALPKEGKRVNVDVHET--EKLE-KSE---------DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILA  338 (633)
T ss_pred             HHHHHHHHhCccccCCcccccchhhhhh--hccc-ccc---------cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHH
Confidence            7776666777765221000000000000  0000 000         000000000011123456788898887654444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHhhcCC--chhhHHHHHHHHHHH
Q 008060          280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG-LNAAGSIVSIYFIDRTGR--KKLLVISLSGVILSL  356 (579)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~  356 (579)
                      .+     .....++.+..|+|.|+++..+.+...++++.....+ +.++|.+++|+++||+++  |+.+..+.++..++.
T Consensus       339 ~~-----~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       339 QV-----IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HH-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            33     3344567788899999998777777778777766554 568999999999999984  466666666666665


Q ss_pred             HH
Q 008060          357 GV  358 (579)
Q Consensus       357 ~~  358 (579)
                      ++
T Consensus       414 ~~  415 (633)
T TIGR00805       414 LL  415 (633)
T ss_pred             HH
Confidence            44

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.95  E-value=5.9e-26  Score=239.48  Aligned_cols=378  Identities=13%  Similarity=0.068  Sum_probs=256.0

Q ss_pred             HHHHHHHhhhhhhhh-hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc-hHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVI-SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILVADFLFFVGA  113 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~-~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr-r~vl~~~~~l~~i~~  113 (579)
                      +++..+..+...... +++.+.+.+++|.+..+.   |++.+++.++..++++++|.++||+|| |+++.++.++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i---Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI---GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            344455555555555 555566778899998888   999999999999999999999999965 778888888888888


Q ss_pred             HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhh--------hcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS--------EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~--------e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      .+..+.++++.+++.|++.|++.+...+...++..        |......|.+.+|      .+|.++++.+++.+....
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~  157 (418)
T TIGR00889        84 FFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL  157 (418)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc
Confidence            88889999999999999999987777776655432        2222223445444      468888888888774332


Q ss_pred             CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060          186 GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (579)
Q Consensus       186 ~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (579)
                       .|+. |++.++..++..+..+++||+|+.   +.+++                           .  ... +..+.+..
T Consensus       158 -~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~---------------------------~--~~~-~~~~~~~~  202 (418)
T TIGR00889       158 -SNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAK---------------------------M--SIK-VMLGLDAF  202 (418)
T ss_pred             -hhHH-HHHHHHHHHHHHHHHhcCCCCCCC---ccccc---------------------------c--CHH-HHhhhhHH
Confidence             2554 445555555555555677887531   00000                           0  000 00012345


Q ss_pred             HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFAS-------NRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (579)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (579)
                      +++|+|.++...+..++...     .......+.|.++++.+...       ....+.......+..+++.+..++++||
T Consensus       203 ~~~k~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr  277 (418)
T TIGR00889       203 ILFKNKRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKR  277 (418)
T ss_pred             HHhcCCCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888877654444333222     22334455677777665432       2445677777788889999999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCC
Q 008060          339 TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS  418 (579)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (579)
                      +|||+++..+.++..++..++........                                                   
T Consensus       278 ~g~r~~l~~~~~~~~v~~~l~~~~~~~~~---------------------------------------------------  306 (418)
T TIGR00889       278 FGIKKVMLLSLVAWALRFGFFAYGDPEYF---------------------------------------------------  306 (418)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCcchh---------------------------------------------------
Confidence            99999999988888777655544211000                                                   


Q ss_pred             CCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-
Q 008060          419 NKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA-  497 (579)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~-  497 (579)
                                                        ..+...+..++.....+ ...+....++.|.+|++.||+++|+.+ 
T Consensus       307 ----------------------------------~~~~l~l~~~l~g~~~~-~~~~~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       307 ----------------------------------GYALLFLSMIVYGCAFD-FFNISGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             ----------------------------------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence                                              01111222223333222 223444577899999999999999997 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          498 TANWISNLIVAQSFLSLTQAI------GTSWTFLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       498 ~~~~~g~~i~~~~~g~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      ....+|.+++|.+.|.+.|..      ||+..|.+.+++.++..++.+++.+|+++.
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence            567899999999999999984      578889999999888888888888877544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=5.1e-25  Score=234.43  Aligned_cols=323  Identities=19%  Similarity=0.219  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      ...+..+++.....++.....+.+++.+..++|.++. .   .|+.+.+.++.+++.++.|+++|.||||++++.+.++.
T Consensus        43 i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~  118 (599)
T PF06609_consen   43 IASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-W---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG  118 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-c---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence            3344445555555666777778888999999997643 4   77889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      .+|+++++.++|...++++..+.|+|.|.... ....++|..|.|.|....++..........+++.++..+.... +||
T Consensus       119 vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~-~WR  196 (599)
T PF06609_consen  119 VVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHS-GWR  196 (599)
T ss_pred             HhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCC-Ccc
Confidence            99999999999999999999999999876664 4566899999999988887777666666667788887766554 499


Q ss_pred             hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhc--------------------------CCCchhh---
Q 008060          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVY--------------------------PAHEVET---  240 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~--------------------------~~~~~~~---  240 (579)
                      |.|++.++...+.+++.+++..+|++...+++....++.+++++                          +.+....   
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~  276 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAP  276 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhh
Confidence            99999998777666553333333333222222111111122211                          0000000   


Q ss_pred             hHHHhhhhhhhhHHhh--ccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch---hHHH
Q 008060          241 EIRDLKESVDKEIEEE--GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN---RTAL  315 (579)
Q Consensus       241 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  315 (579)
                      .......-..----|.  ..+++.-..+++|+++.....+    +..+.....++....+.|.........+.   ...+
T Consensus       277 lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~l----vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~  352 (599)
T PF06609_consen  277 LVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALL----VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIG  352 (599)
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceee
Confidence            0000000000000011  1223445667888754322221    12222222344555556666554443333   2456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHH
Q 008060          316 LLSLVTSGLNAAGSIVSIYFIDRTGRKKLL-VISLSGVILSLGVLSAV  362 (579)
Q Consensus       316 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~  362 (579)
                      +...+..++..+|.++.|.+..+++|-|.. +++..++.+++.++...
T Consensus       353 ~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~  400 (599)
T PF06609_consen  353 WISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV  400 (599)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence            777788888889999999999998875554 46666666555555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.95  E-value=1.7e-25  Score=236.79  Aligned_cols=374  Identities=14%  Similarity=0.045  Sum_probs=236.4

Q ss_pred             HHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHH-
Q 008060           40 GLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA-  117 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~-  117 (579)
                      .++.........+.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+.+++..... 
T Consensus        19 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   95 (420)
T PRK09528         19 FFFFFFIWSSWFSFFPIWLHDINGLSGTDT---GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI   95 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            33444444455566664 556699988888   9999999999999999999999999999999887666554433211 


Q ss_pred             --hcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          118 --AAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       118 --~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                        .++     .+...++.+++.|.+.....+....+..+ . .++|++.++......++|.++++++++.+.+.  +|++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~--~~~~  171 (420)
T PRK09528         96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFNI--NPQI  171 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHhc--CchH
Confidence              111     11112223333343333333333333222 2 24567888898999999999999999998775  5999


Q ss_pred             HHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          191 MLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       191 ~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      .|++.++++++..++.++++++++..... + ++                           +.+++++...++..+.+|+
T Consensus       172 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~---------------------------~~~~~~~~~~~~~~~~l~~  222 (420)
T PRK09528        172 NFWLGSGSALILLVLLFFAKPDAPSTAKV-A-NA---------------------------LGANASAVSLKDALALLKL  222 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccccccchhhh-c-cc---------------------------hhcccccccHHHHHHHccC
Confidence            99998877776666655543332100000 0 00                           0000111123345667888


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (579)
                      |.++...+.......     .+.....+.|.++.+..   ..+....+.+.....+..+++.++.|++.||+++|+.+..
T Consensus       223 ~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~  297 (420)
T PRK09528        223 PKFWFLVLYVIGVAC-----FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLL  297 (420)
T ss_pred             CCeEeehHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Confidence            877654443322211     12222233455554331   2234556677777778888999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccc
Q 008060          348 SLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACL  427 (579)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (579)
                      +..+..++.+++....+                                                               
T Consensus       298 ~~~l~~~~~~l~~~~~~---------------------------------------------------------------  314 (420)
T PRK09528        298 AGTIMAVRIIGSGFATG---------------------------------------------------------------  314 (420)
T ss_pred             HHHHHHHHHHHHHhccc---------------------------------------------------------------
Confidence            88777776666543211                                                               


Q ss_pred             ccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH-HHHHHHHHHHH
Q 008060          428 ISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI-AATANWISNLI  506 (579)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi-~~~~~~~g~~i  506 (579)
                                                .|.......+.....+. ..+....+..|.+|++.+++..+. .++...+|.++
T Consensus       315 --------------------------~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        315 --------------------------PLEVSILKLLHAFEVPF-LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             --------------------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH
Confidence                                      12222222222222211 122234677788899999988766 57778899999


Q ss_pred             HHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccC
Q 008060          507 VAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPE  544 (579)
Q Consensus       507 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (579)
                      +|.+.|.+.|..||+..|...+++.++..++.++..++
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999888877766555543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=2.8e-25  Score=231.98  Aligned_cols=357  Identities=15%  Similarity=0.003  Sum_probs=248.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch----HHHHHHHHHHHHHHHH
Q 008060           40 GLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR----TSILVADFLFFVGAVI  115 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr----~vl~~~~~l~~i~~ll  115 (579)
                      ++..........|.+|.+.+++|.+..+.   |++.+++.++..++++++|+++||+|||    +.+.++..+.  ....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i---G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~   87 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI---GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAF   87 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHH
Confidence            34444556778899999999999988888   9999999999999999999999999984    3333222222  2233


Q ss_pred             HHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060          116 MAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (579)
Q Consensus       116 ~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~  195 (579)
                      ...+++++.+++.|++.|++.+...|...++..++  .++|+++++......++|.++||++++++.+..+ ||..|++.
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~  164 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWIL  164 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHH
Confidence            44568899999999999999988889888887776  3568899999999999999999999999999887 99999887


Q ss_pred             hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (579)
Q Consensus       196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (579)
                      ++..++..+..++.||.++    +++.+                               +..++...++++++|+|.++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~----~~~~~-------------------------------~~~~~~~~~~~~i~~~~~~~~  209 (382)
T PRK11128        165 TAGVASMLLGQLLRPTIMP----QGESR-------------------------------QQESAGWPAWKALLKEPTVWR  209 (382)
T ss_pred             HHHHHHHHHHHHccCCCCC----ccccc-------------------------------cccccccchHHHHHcChhHHH
Confidence            7655444444444454321    00000                               000011245678889888876


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (579)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (579)
                      ..+..++...     .......+.|.|+++.+. +....+.+.....++.++..++.+++.||+++|+.+..+.....++
T Consensus       210 ~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        210 FLLCVSLLQG-----SHAAYYGFSAIYWQAAGY-SASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVR  283 (382)
T ss_pred             HHHHHHHHHH-----HhHhHHHHHHHHHHHCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            5544333322     234455566788877666 4555667777777888999999999999999999988888877776


Q ss_pred             HHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccc
Q 008060          356 LGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKD  435 (579)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (579)
                      .+++....+                                                                       
T Consensus       284 ~~~~~~~~~-----------------------------------------------------------------------  292 (382)
T PRK11128        284 WGLMGSTTA-----------------------------------------------------------------------  292 (382)
T ss_pred             HHHHHhhhh-----------------------------------------------------------------------
Confidence            655543211                                                                       


Q ss_pred             ccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH-HHHHHHHHHHHHHHHHH
Q 008060          436 LCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA-TANWISNLIVAQSFLSL  514 (579)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~-~~~~~g~~i~~~~~g~~  514 (579)
                                        .|...+..++.+..++.. .+....+..+. +++.+++..++.+ ....+|..++|.+.|.+
T Consensus       293 ------------------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l  352 (382)
T PRK11128        293 ------------------LPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFL  352 (382)
T ss_pred             ------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              233333333333333332 23334555665 4555688888886 44567779999999999


Q ss_pred             HHhcccchhhHHHHHHHHHHHHH
Q 008060          515 TQAIGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       515 ~~~~g~~~~~~~~~~~~~~~~~~  537 (579)
                      .|..|. ..++..+++.+++.++
T Consensus       353 ~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        353 YQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHhccH-HHHHHHHHHHHHHHHH
Confidence            999887 4666666666655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.95  E-value=1e-24  Score=229.40  Aligned_cols=371  Identities=14%  Similarity=0.022  Sum_probs=253.2

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchH-HHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRT-SILVADFLFF  110 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~-vl~~~~~l~~  110 (579)
                      ...++..++........+|.+.++-|.+.++.   |++..+...  .+.++++|+++||+     |||| .++++.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i---g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~   79 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI---GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLA   79 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHH
Confidence            34466778888888899999988999999888   888666665  58899999999999     8875 6888888888


Q ss_pred             HHHHHHHhc---chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060          111 VGAVIMAAA---PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (579)
Q Consensus       111 i~~ll~~~a---~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~  187 (579)
                      ++..+.++.   .+++.+++..++.+++.+...++..+++.|++|+++|+++.++...+..+|..+++.++..+.+...+
T Consensus        80 l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g  159 (402)
T PRK11902         80 ASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG  159 (402)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC
Confidence            888877776   45788888888889888888999999999999999999999999999999999999999998875424


Q ss_pred             chhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060          188 WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (579)
                      ||..|++.+++.++..+..+++||+++..   ++.++                               .+++.+.+++++
T Consensus       160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~-------------------------------~~~~~~~~~~~l  205 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRS-------------------------------LGEAVVGPLRDF  205 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccch-------------------------------hHHHHHHHHHHH
Confidence            99999998887766655566677764310   00000                               000012356678


Q ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCchhhH
Q 008060          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVT-SGLNAAGSIVSIYFIDRTGRKKLLV  346 (579)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~  346 (579)
                      +|+|.++...+...+......     ....+.+.++.+..+.+....+++.... .++.+++.++++++.||+++|+.+.
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~  280 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDA-----FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLM  280 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            888887765544333222111     1112223334443333566666665443 4457899999999999999999877


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          347 ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      .+..+..+..+.+........                                                           
T Consensus       281 ~~~~~~~l~~l~~~~~~~~~~-----------------------------------------------------------  301 (402)
T PRK11902        281 LFGVLQAVSNLGYWVLAVTPK-----------------------------------------------------------  301 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC-----------------------------------------------------------
Confidence            666665555443332211000                                                           


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHH---HHHhhccCcccccceeeccccccccchhhhHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLAL---YIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWIS  503 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g  503 (579)
                                                ..+.......+   ..........+....++.+.+|.+    ..++.+....++
T Consensus       302 --------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~  351 (402)
T PRK11902        302 --------------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSAT----QYALLSALASVG  351 (402)
T ss_pred             --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHH
Confidence                                      01222222211   111111112334445666666654    445566666778


Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +.+++.+.|.+.|..|+...|.+.+++++++.++.+.
T Consensus       352 ~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        352 RVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            8777778999999999999999999888888766543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=2.3e-25  Score=264.23  Aligned_cols=396  Identities=11%  Similarity=0.011  Sum_probs=258.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH---HHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV---ADF  107 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~---~~~  107 (579)
                      .+...+++.+.+.+....+..+.. .+..+.+.+..  .+.++..+++.+.++++++++|+++||+|||+++..   ..+
T Consensus        16 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~   93 (1140)
T PRK06814         16 LFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNN--ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEI   93 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchH--HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHH
Confidence            334445555555555544443333 33344333222  234889999999999999999999999999997533   222


Q ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060          108 LFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (579)
Q Consensus       108 l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~  187 (579)
                      +..+..+.....++++.++++|+++|++.+...|+..+++.+++|+++|++++++.+++.++|.++||++++++....+ 
T Consensus        94 ~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-  172 (1140)
T PRK06814         94 GIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-  172 (1140)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            3333333333458999999999999999999999999999999999999999999999999999999999999998876 


Q ss_pred             chhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060          188 WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (579)
                      |++.|+..++..++.+++.+++|+++...  ++...+                          .   ...+.....++.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~---~~~~~~~~~~~~~  221 (1140)
T PRK06814        173 FVILVALLMGIAVLGWLASLFIPKTGNAA--PDLKID--------------------------R---NIIRSTITLLKYA  221 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CCCeec--------------------------c---chHHHHHHHHHHH
Confidence            99999555555565555566677653200  000000                          0   0000012345666


Q ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (579)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (579)
                      .+++.++...+.....     +.....+..+.|.|+++..+.+....+++.....++.++|.++.|+++|+..+++.+..
T Consensus       222 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~  296 (1140)
T PRK06814        222 KADKRIWLAILGISWF-----WLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI  296 (1140)
T ss_pred             hcCchHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence            7777776544433322     22334556678999988766677788888899999999999999999998877776666


Q ss_pred             HHHHHHHHHHHHHHHhcc-cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccc
Q 008060          348 SLSGVILSLGVLSAVFHE-TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGAC  426 (579)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (579)
                      +.++..++.+.+...... ........                                                    .
T Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~~~~~----------------------------------------------------~  324 (1140)
T PRK06814        297 GALLMGLFGLDLAFASSSVPAEPAQLK----------------------------------------------------S  324 (1140)
T ss_pred             HHHHHHHHHHHHHhccccccccccccc----------------------------------------------------c
Confidence            555555544433332000 00000000                                                    0


Q ss_pred             cccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHH
Q 008060          427 LISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLI  506 (579)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i  506 (579)
                      ++                  ........|...+..++++.+.+. ..+...+++.+..|++.+|+++|+.++...++..+
T Consensus       325 ~~------------------~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i  385 (1140)
T PRK06814        325 IL------------------VFLSKRHGWRILIDLFGLAAAGGL-YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVA  385 (1140)
T ss_pred             hh------------------hhhcccccHHHHHHHHHHHHHHHH-hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence            00                  000001233334434444433332 23345688899999999999999999999999999


Q ss_pred             HHHHHHHHHHh-cccchhhHHHHHHHHHHHHH
Q 008060          507 VAQSFLSLTQA-IGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       507 ~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~  537 (579)
                      ++.+.|.+.+. .++...+++.+++.++..++
T Consensus       386 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  417 (1140)
T PRK06814        386 GTIILALLQALGFSIPWIILFIALANLIVAIL  417 (1140)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999988753 45555555555544444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.94  E-value=5.3e-25  Score=261.73  Aligned_cols=369  Identities=11%  Similarity=-0.007  Sum_probs=250.1

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhcchhh
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAAPNPG  123 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a~~~~  123 (579)
                      ......+.+.+..+++.+... .+.+++.+++.+++.++++++|+++||+|||++++++.++..++.++.   ..+++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~  104 (1146)
T PRK08633         26 LGHKILIQNTLIKAYDGSEQV-ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFW  104 (1146)
T ss_pred             HHHHHHHHHHHHHHcCcccHH-HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            344445555666677654433 345899999999999999999999999999999998887665555443   3457899


Q ss_pred             HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC--------cCcchhHHHHh
Q 008060          124 ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA--------PGTWRWMLGVA  195 (579)
Q Consensus       124 ~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~--------~~~Wr~~f~i~  195 (579)
                      .++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|+++++++.+.        .++|++.+.+.
T Consensus       105 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  184 (1146)
T PRK08633        105 LAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLV  184 (1146)
T ss_pred             HHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998765        33355555544


Q ss_pred             hHHH-HHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhh
Q 008060          196 GIPA-LLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVR  274 (579)
Q Consensus       196 ~i~~-l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (579)
                      .+.. ++.+++.+.+||+|+....+.+.+                             ...........+..+++++.++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~~  235 (1146)
T PRK08633        185 LLAVAVLGLIFAYRLPKVPAAAPEVFDKK-----------------------------KYLFPKLLWRNLKLLRSDRVLW  235 (1146)
T ss_pred             HHHHHHHHHHHHhcCcCCCCCCccccccc-----------------------------ccccHHHHHHHHHHHhcCcHHH
Confidence            4333 333344556677754211000000                             0000000123455666777665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060          275 RGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNR-TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (579)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (579)
                      ...+...+.     +........+.|.++.+..+.+.. ..+++.....++.+++.++.+++.||+++++.+.++.++++
T Consensus       236 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~  310 (1146)
T PRK08633        236 LAIIGLSYF-----WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLA  310 (1146)
T ss_pred             HHHHHHHHH-----HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHH
Confidence            543332222     222344555677887765554555 77888888889999999999999999999888887777777


Q ss_pred             HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060          354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV  433 (579)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (579)
                      ++.+++.....                                                                     
T Consensus       311 ~~~~~~~~~~~---------------------------------------------------------------------  321 (1146)
T PRK08633        311 LSLFLLPTAPS---------------------------------------------------------------------  321 (1146)
T ss_pred             HHHHHHHHhhh---------------------------------------------------------------------
Confidence            66655544311                                                                     


Q ss_pred             ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 008060          434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS  513 (579)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~  513 (579)
                                          .+..++..++++.+.+. ..+...+++.+..|++.||+++|+.+++.++|.++++.+.+.
T Consensus       322 --------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~  380 (1146)
T PRK08633        322 --------------------LASVLVLFFLFGFSAGL-FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL  380 (1146)
T ss_pred             --------------------HHHHHHHHHHHHHHHHH-hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                12223333333333322 234456788899999999999999999999999888877665


Q ss_pred             HHHh-cccchhhHHHHHHHHHHHHHhhh
Q 008060          514 LTQA-IGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       514 ~~~~-~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +... .++...+++.+.+.++..++...
T Consensus       381 l~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (1146)
T PRK08633        381 FSGLGLSPAGLFYLIALVTLIGTLYTLL  408 (1146)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            5442 23334555555555444444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.94  E-value=2e-24  Score=226.81  Aligned_cols=373  Identities=14%  Similarity=0.056  Sum_probs=249.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l  114 (579)
                      +....++.........|.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||+.++.+....+++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         7 FGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT---GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            334455555666667777776 456789988888   9999999999999999999999999999999887766655443


Q ss_pred             HH---Hhcc-----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          115 IM---AAAP-----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       115 l~---~~a~-----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ..   .+.+     .+..+++.|++.|++.+...+....+..|..  +++++.++......++|.++++.+++.+.+.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--  159 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI--  159 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc--
Confidence            22   1221     2344567788899988888888877776653  2345677888888899999999999988765  


Q ss_pred             cchhHHHHhhHHHHHHHHHHHhc-cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHH
Q 008060          187 TWRWMLGVAGIPALLQFILMLLL-PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLV  265 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (579)
                      +||+.|++.+++.++..++.+.. ||+|+.       ++..+                       ..+.++++.+.++..
T Consensus       160 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----------------------~~~~~~~~~~~~~~~  209 (396)
T TIGR00882       160 DPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN-----------------------ALGANASAFSLKLAL  209 (396)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc-----------------------ccccccCCCCHHHHH
Confidence            59999999988777766554443 443220       00000                       000001111234567


Q ss_pred             HhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060          266 KLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (579)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (579)
                      +.+|+|.++...+..+..     ...+.....+.|.|+++..   ..+....+.......+..+++.+..+++.||++||
T Consensus       210 ~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~  284 (396)
T TIGR00882       210 ELFRQRKFWMFVLYVVGV-----ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK  284 (396)
T ss_pred             HHHcCCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888888876543332221     1223334345566666543   22334456666777777888899999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF  422 (579)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (579)
                      +.+.++..+.++...++....                                                           
T Consensus       285 ~~l~~~~~l~~l~~~~~~~~~-----------------------------------------------------------  305 (396)
T TIGR00882       285 NALLIAGTIMSVRIIGSSFAT-----------------------------------------------------------  305 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHhcC-----------------------------------------------------------
Confidence            998888877777665433211                                                           


Q ss_pred             CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH-HHHHHH
Q 008060          423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI-AATANW  501 (579)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi-~~~~~~  501 (579)
                                                    ..+.......+........ ......+..+..|++.+++..+. .+....
T Consensus       306 ------------------------------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~  354 (396)
T TIGR00882       306 ------------------------------TALEVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQ  354 (396)
T ss_pred             ------------------------------ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHH
Confidence                                          0222222222222222111 11223455667788888887776 578899


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +|++++|.+.|.+.|..|++.+|.+.+++.++..+...+
T Consensus       355 lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       355 LAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887766543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.94  E-value=2.5e-26  Score=244.34  Aligned_cols=414  Identities=16%  Similarity=0.144  Sum_probs=296.5

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      ...+-|.+++..++..+...-....++.+.+.++++++.+..+.   +|+.++......+..++.+.+.||+|.|.+.+.
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~---~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~  116 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI---AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIA  116 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH---HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHH
Confidence            55677888888888877776667777888999999999988887   999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcchhhHHHHHH-HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060          105 ADFLFFVGAVIMAAAPNPGALITGR-VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~~~~ll~~R-~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~  183 (579)
                      |.++.+++.++.++++++|++++.. ++.|+|.|..+.....++..||++ +|+.+.|+..++.++|.++-|.+...+.+
T Consensus       117 G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-kR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-KRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH-HHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            9999999999999999999998877 889999999999999999988875 49999999999999999999999999999


Q ss_pred             CcCcchhHHHHhhHHHHHHHHHHHhccC-ChhHHHhcCCHHHHHHHHHhhcC------------CCchhhh--HHHhhhh
Q 008060          184 APGTWRWMLGVAGIPALLQFILMLLLPE-SPRWLYRKGREEEAQAILRKVYP------------AHEVETE--IRDLKES  248 (579)
Q Consensus       184 ~~~~Wr~~f~i~~i~~l~~~i~~~~lpe-sp~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~~~~~  248 (579)
                      ..| ||+.+++.+.+.+-..+....+++ +++....   .++..+.......            .+.....  ..+....
T Consensus       196 ~~G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (509)
T KOG2504|consen  196 KYG-WRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATL  271 (509)
T ss_pred             HhC-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccccchhhh
Confidence            998 999999999887666666444433 3221111   0000000000000            0000000  0000000


Q ss_pred             hhhhHHhhccchhhhH----HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 008060          249 VDKEIEEEGSSEKINL----VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGL  324 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (579)
                      .+.+++......+...    .++++++.++.     ..+...+...++.....++|.+.+..+. +...+..+....++.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~-----~~~~~~~~~~g~~~p~~~l~~~~~~~g~-~~~~aa~l~Siigi~  345 (509)
T KOG2504|consen  272 KRGPDKWRNSPLQAFLSMLDLSLLKDPKFLL-----LALSNLFAYLGFNVPFVYLPSYAKSLGL-SSNDAAFLLSIIGVS  345 (509)
T ss_pred             hhCCccccccchhhhhhhhhHHHHcCchHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCC-ChhhhHHHHHHHHHh
Confidence            0000001100112222    57777766643     3344455566778888889999997777 455566677778888


Q ss_pred             HHHHHHHHHHHHhhcCCchhhH--HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccc
Q 008060          325 NAAGSIVSIYFIDRTGRKKLLV--ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMK  402 (579)
Q Consensus       325 ~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (579)
                      .++++++.|++.|+...++..+  ++.+..+++.+.+....                                       
T Consensus       346 ~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~---------------------------------------  386 (509)
T KOG2504|consen  346 DIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT---------------------------------------  386 (509)
T ss_pred             hhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc---------------------------------------
Confidence            9999999999999988544433  44444444443332221                                       


Q ss_pred             cccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc
Q 008060          403 CLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE  482 (579)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (579)
                                                                         .+..++..+++.++...........++.|
T Consensus       387 ---------------------------------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~  415 (509)
T KOG2504|consen  387 ---------------------------------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVD  415 (509)
T ss_pred             ---------------------------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                               22224444444443333334454568889


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060          483 IYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       483 ~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      +.+.+.-..+.|+...+..++..++|.+.|.+.|..| |...|...++..+++.++.+ +.+
T Consensus       416 ~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~-~~~  476 (509)
T KOG2504|consen  416 LVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL-ILR  476 (509)
T ss_pred             HcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH-HhH
Confidence            9999999999999999999999999999999999988 88899999998888887643 344

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3e-24  Score=212.51  Aligned_cols=369  Identities=15%  Similarity=0.136  Sum_probs=281.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      ..+.+....++.++......+++|.+++.|+++..+.   +++...++.|+.+.+++.|++.+|+|+|+-+++|+.++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a---~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~av   90 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA---SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAV   90 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH---HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445556667888888899999999999999999999   9999999999999999999999999999999999999999


Q ss_pred             HHHHHH---hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC----
Q 008060          112 GAVIMA---AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA----  184 (579)
Q Consensus       112 ~~ll~~---~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~----  184 (579)
                      ++.++.   -..++..++++-|+.|.|.+...+.+..+++...++++..+.+++.+..+++|.+++|++++.+...    
T Consensus        91 g~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~  170 (422)
T COG0738          91 GAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVAL  170 (422)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhh
Confidence            999984   5678999999999999999999999999999999998889999999999999999999999998773    


Q ss_pred             --------------cCcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhh
Q 008060          185 --------------PGTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKES  248 (579)
Q Consensus       185 --------------~~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (579)
                                    ...||++|...+...++..+.....  |+.+.                                  
T Consensus       171 ~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~----------------------------------  216 (422)
T COG0738         171 TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV----------------------------------  216 (422)
T ss_pred             ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc----------------------------------
Confidence                          1248888888887766666665443  33211                                  


Q ss_pred             hhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 008060          249 VDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAG  328 (579)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (579)
                         ...+..+.+.....+++++|.++...+..++..     ........|++.|+.+..+.+..++........++.++|
T Consensus       217 ---~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYV-----G~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vG  288 (422)
T COG0738         217 ---AAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYV-----GAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVG  288 (422)
T ss_pred             ---ccccccccccchHHHHHhChHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence               000111111125788899998887666544332     234566678889998866667888888888899999999


Q ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCC
Q 008060          329 SIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASS  408 (579)
Q Consensus       329 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (579)
                      ++++.++..|+...|.+........+.++......                                             
T Consensus       289 RFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~---------------------------------------------  323 (422)
T COG0738         289 RFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG---------------------------------------------  323 (422)
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc---------------------------------------------
Confidence            99999999999988887766655444444433331                                             


Q ss_pred             CCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc
Q 008060          409 PDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF  488 (579)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  488 (579)
                                                                   +.. .+...+..+.+...+.|..++...+..| +.
T Consensus       324 ---------------------------------------------g~v-~~~~l~~ig~F~simfPTIfslal~~l~-~~  356 (422)
T COG0738         324 ---------------------------------------------GVV-ALYALFLIGLFNSIMFPTIFSLALKNLG-EH  356 (422)
T ss_pred             ---------------------------------------------ChH-HHHHHHHHHHHhHHHHHHHHHHHHhccC-cc
Confidence                                                         112 2333334444444567877888888888 33


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060          489 RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      ...+.+ ......+|+++.|.+.|++.|..|....+.....+|.+..++.
T Consensus       357 ts~~s~-~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~  405 (422)
T COG0738         357 TSVGSG-LLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFF  405 (422)
T ss_pred             ccccce-eeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            333333 3344568999999999999999998877775666666555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-26  Score=226.73  Aligned_cols=382  Identities=18%  Similarity=0.117  Sum_probs=276.8

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhccc--------------------------------------------
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKS--------------------------------------------   63 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~--------------------------------------------   63 (579)
                      .|..++..++++.+.+.+..+.+.|++|....+.+-                                            
T Consensus        18 ~r~lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~   97 (464)
T KOG3764|consen   18 SRPLILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAE   97 (464)
T ss_pred             ccceEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchh
Confidence            344556667777778877788888888876554441                                            


Q ss_pred             ---ccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhh
Q 008060           64 ---VDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS  140 (579)
Q Consensus        64 ---s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~  140 (579)
                         ...+...+|++.+++.+...+.+++.|.++||+|+|-.+++|++++..+++++++.+++++++++|.+||+|.++..
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence               11223345999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhHhhhhcCCcc-cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhc
Q 008060          141 MTSPLYISEASPAK-IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRK  219 (579)
Q Consensus       141 ~~~~~~l~e~~p~~-~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~  219 (579)
                      ....++++|.||++ +|++++|+...+.++|..+||++||.+.+..| .+..|++.++++++...+.+++-|..+     
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~-----  251 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE-----  251 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc-----
Confidence            99999999999965 57999999999999999999999999999998 999999999999998888666533311     


Q ss_pred             CCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          220 GREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYS  299 (579)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (579)
                                                     .  +++...+..+.++++++|..+........     ...+.....--+
T Consensus       252 -------------------------------~--~~~~~~~~~~~~~Ll~dP~I~~~agai~~-----~n~~lafLePtl  293 (464)
T KOG3764|consen  252 -------------------------------M--DPDSTEQGTPMWSLLMDPYILLIAGAITF-----SNSSLAFLEPTL  293 (464)
T ss_pred             -------------------------------c--CccccccCccHHHHHhCchHhhhhcchhh-----ccchHHHhCccc
Confidence                                           0  01112234568899999987543322211     122233333334


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH--HHHHHHHHHHHHHHHHhcccCCCCCcccccc
Q 008060          300 PTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLV--ISLSGVILSLGVLSAVFHETTSHSPMVSAVE  377 (579)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (579)
                      +.++.+....+....++......+...+++.++|.+.||++..+.+.  .+.+....+.....+.....           
T Consensus       294 slwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~-----------  362 (464)
T KOG3764|consen  294 SLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIA-----------  362 (464)
T ss_pred             HHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHH-----------
Confidence            55555555556657788888888999999999999999999444333  33222222222222211100           


Q ss_pred             ccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHH
Q 008060          378 TSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLA  457 (579)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (579)
                                                                                                 .-|..
T Consensus       363 ---------------------------------------------------------------------------~L~vp  367 (464)
T KOG3764|consen  363 ---------------------------------------------------------------------------QLWVP  367 (464)
T ss_pred             ---------------------------------------------------------------------------HHhhh
Confidence                                                                                       01222


Q ss_pred             HHHHHHHHHhhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 008060          458 LVGLALYIIFFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAA  534 (579)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~  534 (579)
                      ..++.+.+......+.|.. .+..+.-..+   ..|...++...+..+|.++||.+.|.+.+..|+.|...+.++..++.
T Consensus       368 ~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iy  446 (464)
T KOG3764|consen  368 NFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIY  446 (464)
T ss_pred             hHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHH
Confidence            3333333333333333333 2333333333   67899999999999999999999999999999999999999998887


Q ss_pred             HHHhhh
Q 008060          535 LLFVLI  540 (579)
Q Consensus       535 ~~~~~~  540 (579)
                      .-++.+
T Consensus       447 apvl~l  452 (464)
T KOG3764|consen  447 APVLLL  452 (464)
T ss_pred             HHHHHH
Confidence            766544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.93  E-value=6.4e-24  Score=225.82  Aligned_cols=337  Identities=15%  Similarity=0.079  Sum_probs=232.2

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchH-HHHHHHHHHHHHHHHHHhcch-----
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRT-SILVADFLFFVGAVIMAAAPN-----  121 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~-vl~~~~~l~~i~~ll~~~a~~-----  121 (579)
                      ...+.+.+++|++....   |++.++..+..++..++.|+++||    +|||| .++++....+++.+++.+.++     
T Consensus        21 ~l~~~~~~~~g~s~~~~---g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~   97 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFV---GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATG   97 (437)
T ss_pred             HHHHHHHHccCCCHHHH---HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcch
Confidence            34556778899988888   999999999999999999999997    68755 566788888888887776654     


Q ss_pred             -hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhcc-------CcCcchhHH
Q 008060          122 -PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTR-------APGTWRWML  192 (579)
Q Consensus       122 -~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-------~~~~Wr~~f  192 (579)
                       +..+++.+++.+++.+...++..++..|.. ++++|++..++...+..+|..+++.+.+.+..       .. +||+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~-g~~~~~  176 (437)
T TIGR00792        98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKF-GWFMFA  176 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cHHHHH
Confidence             456677888889988887777788888887 46889999999988888888877766555442       22 499999


Q ss_pred             HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      .+.+++.++..+. ++..+|.++..    + +                             +++++.......++++++|
T Consensus       177 ~i~~~l~~~~~~~~~~~~~e~~~~~----~-~-----------------------------~~~~~~~~~~~~~~l~~~~  222 (437)
T TIGR00792       177 LVLALIGVVSLIICFFGTKERYSEI----P-K-----------------------------NIEKKLSLKQIFKALFKND  222 (437)
T ss_pred             HHHHHHHHHHHHHHHcCCEecCCCC----C-c-----------------------------ccccCCCHHHHHHHHhCCH
Confidence            9998877766655 45566653100    0 0                             0000111123456677888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (579)
                      .++...+..++..     .+......+.+.+.+.... +....+.+.....++.+++.++.++++||+|+|+++..+..+
T Consensus       223 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~  296 (437)
T TIGR00792       223 QLLILCLAYLFYN-----LAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILL  296 (437)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            7765444333222     2233333344555544433 344455666667888999999999999999999998888877


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS  431 (579)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (579)
                      .+++.+.+....+                                                                   
T Consensus       297 ~~~~~~~~~~~~~-------------------------------------------------------------------  309 (437)
T TIGR00792       297 MVLGYLIFFFAGS-------------------------------------------------------------------  309 (437)
T ss_pred             HHHHHHHHHHcch-------------------------------------------------------------------
Confidence            7776665543210                                                                   


Q ss_pred             ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHHH
Q 008060          432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWISN  504 (579)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g~  504 (579)
                                           ..+...+...+...+.+. ..+..+++.+|..+       ++.+|..+|+.++...+|.
T Consensus       310 ---------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~  367 (437)
T TIGR00792       310 ---------------------NLPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ  367 (437)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence                                 012222222222222222 23455677777654       5678999999999999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q 008060          505 LIVAQSFLSLTQAIGTS  521 (579)
Q Consensus       505 ~i~~~~~g~~~~~~g~~  521 (579)
                      .+++.+.|.+.+..|+.
T Consensus       368 ~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       368 ALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999987764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=1.6e-23  Score=216.62  Aligned_cols=273  Identities=11%  Similarity=0.065  Sum_probs=194.2

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-----cchHH-HHHHHHHHHHHHHHHHhc-
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-----GRRTS-ILVADFLFFVGAVIMAAA-  119 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-----Grr~v-l~~~~~l~~i~~ll~~~a-  119 (579)
                      ....++..|.+.+|+|.+..+.   |++.+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++. 
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~---g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~   78 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTI---GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV   78 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHH---HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            4556788899999999999888   887655 455555 99999999998     89887 466777787777777776 


Q ss_pred             --chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-------cchh
Q 008060          120 --PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRW  190 (579)
Q Consensus       120 --~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-------~Wr~  190 (579)
                        .+++.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+....+       +||.
T Consensus        79 ~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        79 PSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence              4666777788888998888899999999999999999999999999999999999999988876654       2999


Q ss_pred             HHHHhhHHHHHHHHHHH-hccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060          191 MLGVAGIPALLQFILML-LLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (579)
Q Consensus       191 ~f~i~~i~~l~~~i~~~-~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (579)
                      .|++.++..++..+..+ ..||+++.   +.+.++                               ++++.+..++++++
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~-------------------------------~~~~~~~~~~~~~~  204 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEPQED---ASVPKP-------------------------------LTQAVLKPIREFFQ  204 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCcc---cccchh-------------------------------HHHHHHHHHHHHHH
Confidence            99999987776665544 35664210   000000                               00001224456666


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCchhhHHH
Q 008060          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVT-SGLNAAGSIVSIYFIDRTGRKKLLVIS  348 (579)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~d~~~~~~~~~~~  348 (579)
                      ++..+......+  ..+...........+.|.|+++.+. +....+.+.... .+..+++.++++++.||+|||+.+..+
T Consensus       205 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       205 RKNMIQALLLLL--LIVLYKLGDSAATVLTTLFLLDMGF-SKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hcCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            665222222111  1122233455667788888888555 555555555443 356789999999999999999998888


Q ss_pred             HHHHHHHHHHHHH
Q 008060          349 LSGVILSLGVLSA  361 (579)
Q Consensus       349 ~~~~~~~~~~~~~  361 (579)
                      .++..++..++..
T Consensus       282 ~~~~~~~~~~~~~  294 (356)
T TIGR00901       282 GIVQALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777766655544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.93  E-value=2e-23  Score=223.21  Aligned_cols=373  Identities=16%  Similarity=0.102  Sum_probs=269.6

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l  114 (579)
                      .++++.+...+...+....++-+..+..-++...   +++..+..+...+.++++|.++||++||++++.+-++.++..+
T Consensus        14 ~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~v---alv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~   90 (524)
T PF05977_consen   14 RLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMV---ALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVAL   90 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            3445555555666666666666666665555555   9999999999999999999999999999999998887766554


Q ss_pred             HHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          115 IMAA-----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       115 l~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      +.++     ..+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+....| -.
T Consensus        91 ~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~  169 (524)
T PF05977_consen   91 LLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AA  169 (524)
T ss_pred             HHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HH
Confidence            4433     24788999999999999999999999999999999999999999999999999999999999988776 78


Q ss_pred             hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (579)
                      +.|++.++..++.++.....+..++.  ++...+                               ...+.-+..++-..+
T Consensus       170 ~~f~inalsfl~~i~~l~~~~~~~~~--~~~~~e-------------------------------~~~~~l~~G~ryv~~  216 (524)
T PF05977_consen  170 AAFLINALSFLISILALLRWKPPPPP--SSLPRE-------------------------------RFFSALREGLRYVRS  216 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccccc--cccchh-------------------------------hhhhhHHHHHHHHhc
Confidence            88888877665555444444332110  000000                               000001123333444


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHH
Q 008060          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (579)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (579)
                      +|..+..++....+.     .....+...+|.+.++..+.+....+++....++++++|.++.+++.+|+++++++..+.
T Consensus       217 ~~~l~~~l~~~~~~~-----l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  217 SPPLRSVLLRSFLFN-----LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             chHHHHHHHHHHHHH-----HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence            555544333222221     122334456788887776667788899999999999999999999999999988888887


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCcccccc
Q 008060          350 SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLIS  429 (579)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (579)
                      ++.+++.+.+.+..+                                                                 
T Consensus       292 ~~~a~~~~~lal~~~-----------------------------------------------------------------  306 (524)
T PF05977_consen  292 LLFALALLLLALSPS-----------------------------------------------------------------  306 (524)
T ss_pred             HHHHHHHHHHhcchH-----------------------------------------------------------------
Confidence            777776666554322                                                                 


Q ss_pred             CcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060          430 NSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ  509 (579)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~  509 (579)
                                              .|...+.+++.+.+.. ...+...+...+..|++.||.++++.++....+..+|..
T Consensus       307 ------------------------~~~~~~~l~l~G~~~~-~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsl  361 (524)
T PF05977_consen  307 ------------------------FWLALIALFLAGAAWI-IANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSL  361 (524)
T ss_pred             ------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                                    2333333333333332 223344577889999999999999999999999999999


Q ss_pred             HHHHHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060          510 SFLSLTQAIGTSWTFLIFGVISVAALLFVL  539 (579)
Q Consensus       510 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  539 (579)
                      +.|.+.+..|...++.+.++..+++.++.+
T Consensus       362 l~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  362 LWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888887776666666543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.93  E-value=2e-24  Score=210.77  Aligned_cols=164  Identities=20%  Similarity=0.227  Sum_probs=128.1

Q ss_pred             hhhhhhhhhhhhhcccc----c-chhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh
Q 008060           48 GVISGALLYIRDDFKSV----D-RKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP  122 (579)
Q Consensus        48 ~~~~~~lp~i~~~~~~s----~-~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~  122 (579)
                      ..+-+....+.++|+.-    + ....+.|.+.+.|.++..+.++.+|.++||+|||+++++|++..++..++.+.++||
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F  121 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF  121 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555555421    1 234556999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc---CcCcchhHH--HHhhH
Q 008060          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR---APGTWRWML--GVAGI  197 (579)
Q Consensus       123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~---~~~~Wr~~f--~i~~i  197 (579)
                      ..+++.|++.|+..| ......++++|.+++++|+++++.+...+++|.++||.+|+++..   ..+.+...+  ++..+
T Consensus       122 ~afv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i  200 (451)
T KOG2615|consen  122 AAFVLARFLGGIFKG-NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFI  200 (451)
T ss_pred             HHHHHHHHhhhhccC-chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHH
Confidence            777777999999988 556677999999999999999999999999999999999999987   333222222  11222


Q ss_pred             HHHH-HHHHHHhccCC
Q 008060          198 PALL-QFILMLLLPES  212 (579)
Q Consensus       198 ~~l~-~~i~~~~lpes  212 (579)
                      .... ..+..+++||+
T Consensus       201 ~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  201 LAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            2222 22335778998

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.93  E-value=6.3e-23  Score=200.09  Aligned_cols=370  Identities=17%  Similarity=0.171  Sum_probs=286.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      +..+..+.+..+..--..+..+|+++.+.+++|++....   |+++++..+...+.+++..+++.|+|.++.+.+++++.
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a---GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli   87 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA---GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLI   87 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHH
Confidence            556666666667777778889999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      ++|.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||++ -+..+|+|.+..++|.++++.+...+.++.++||
T Consensus        88 ~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~  165 (395)
T COG2807          88 AAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWR  165 (395)
T ss_pred             HHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHH
Confidence            9999999887 8888999999999999999999999999999976 5999999999999999999999999988876699


Q ss_pred             hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhh
Q 008060          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLK  269 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (579)
                      ....+.+.++++.++.|+.-.  .|+     +                                ....+.+..+..+++|
T Consensus       166 ~aL~~WAl~allAl~~WlPq~--~r~-----~--------------------------------~~~~~~~~~~~~~vw~  206 (395)
T COG2807         166 GALGFWALLALLALLIWLPQA--LRE-----Q--------------------------------AASIATKLVSVRKVWR  206 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhc--ccc-----c--------------------------------cccccccccccccccc
Confidence            999999999888888766432  110     0                                0111111234456788


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHH
Q 008060          270 TRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVIS  348 (579)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~  348 (579)
                      +|..|...+     .+..|...++.+..|+|.++.+.|. +.++++.+.....+..++.++....+.+|. ++|+..+..
T Consensus       207 ~~~aW~vtL-----fmGlqS~~~Y~~~~WLP~ili~~G~-sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~  280 (395)
T COG2807         207 SPLAWQVTL-----FMGLQSLLYYIVIGWLPAILIDRGL-SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLA  280 (395)
T ss_pred             CchhHHHHH-----HHHhhHHHHHHHHHHHHHHHHHcCC-CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            887776443     3455666789999999999999988 567778888888888999999999999975 456666666


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060          349 LSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI  428 (579)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (579)
                      ..++.++.+.+.+...                                                                
T Consensus       281 ~~~~l~G~~G~~~~P~----------------------------------------------------------------  296 (395)
T COG2807         281 LLLMLVGLVGLLLAPG----------------------------------------------------------------  296 (395)
T ss_pred             HHHHHHHHHHHHHhhh----------------------------------------------------------------
Confidence            6666666666554321                                                                


Q ss_pred             cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecc-ccccccchhhhHHHHHHHHHHHHHH
Q 008060          429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSE-IYPLRFRGVCGGIAATANWISNLIV  507 (579)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~g~~~gi~~~~~~~g~~i~  507 (579)
                                             ...   ...+++ .+....+.+++..+.+.. .-.++..+.-.|..+..+++-++.+
T Consensus       297 -----------------------~~~---~lw~~l-lG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~G  349 (395)
T COG2807         297 -----------------------QLP---ILWALL-LGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFG  349 (395)
T ss_pred             -----------------------hHH---HHHHHH-HhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhh
Confidence                                   011   111222 222222334444444443 3445677888999999999999999


Q ss_pred             HHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhh
Q 008060          508 AQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       508 ~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      |.++|++.|..| |...+..+++..++..++.+.
T Consensus       350 P~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         350 PWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             hhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            999999999987 777777666666666555443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=9.9e-23  Score=218.07  Aligned_cols=417  Identities=12%  Similarity=0.073  Sum_probs=257.4

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhh-hhh--cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHH
Q 008060           34 FSAGIGGLLFGYDTGVISGALLYI-RDD--FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLF  109 (579)
Q Consensus        34 ~~~~l~~~~~~~~~~~~~~~lp~i-~~~--~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~  109 (579)
                      ..+.+..+...+......+.+|.+ .++  +|.+..+.   +++.+.+.++..++++++|+++|| +|||+++.++.++.
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a---g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA---FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            334455566666666666667765 455  88988888   999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc---chhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          110 FVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI---RGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       110 ~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~---R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      +++.++.+++++++.+++.|++.|++.|...+...++++|++|+++   |++++++++.+.++|.++||.+++++.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998754   8889999999999999999999999988777


Q ss_pred             cchhHHHHhhHHHHHHHHHHHhccCC----hhHHHhcCCHHHHHHHHHhh---------------cCCCchhhhHHH---
Q 008060          187 TWRWMLGVAGIPALLQFILMLLLPES----PRWLYRKGREEEAQAILRKV---------------YPAHEVETEIRD---  244 (579)
Q Consensus       187 ~Wr~~f~i~~i~~l~~~i~~~~lpes----p~~l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~---  244 (579)
                       ||+.|.+.++..++..+.+++.++.    |+. .++.+.++.+......               ............   
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVT  247 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcccccccCCCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence             9999999886555544444443322    110 0000111100000000               000000000000   


Q ss_pred             hhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch----hHHHHHHHH
Q 008060          245 LKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN----RTALLLSLV  320 (579)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  320 (579)
                      ............++    ...+.-|++. .  .++.++......+..+.......+.+.++....+.    ...+++...
T Consensus       248 ~~~~~~~~~~~~~~----~~~~~~~~~~-~--~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~  320 (475)
T TIGR00924       248 LAVIIFFFRLAFKP----RLDAVARNKM-Y--AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSL  320 (475)
T ss_pred             HHHHHHHHHHHHhc----cCCHHHHhHH-H--HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhh
Confidence            00000000000000    0000111111 1  11112222222233344444445555544321111    113455555


Q ss_pred             HHHHHHHHHHHHHHHHhhcCC-----chhh--HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccc
Q 008060          321 TSGLNAAGSIVSIYFIDRTGR-----KKLL--VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAA  393 (579)
Q Consensus       321 ~~~~~~~~~~~~g~l~d~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (579)
                      ..+..++..++..++-.|..|     +...  .+|.++.+++++.+.........+                        
T Consensus       321 n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~------------------------  376 (475)
T TIGR00924       321 NPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAG------------------------  376 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------------------
Confidence            555555555554443333333     3333  567777777777766542211000                        


Q ss_pred             ccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcc
Q 008060          394 TADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMG  473 (579)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (579)
                                                                             .+ ...|+.+.... +.........
T Consensus       377 -------------------------------------------------------~~-~s~~~~i~~~~-~~~~ge~~~~  399 (475)
T TIGR00924       377 -------------------------------------------------------GL-TSPWFMVLIYL-FQTLGELMIS  399 (475)
T ss_pred             -------------------------------------------------------Cc-cCHHHHHHHHH-HHHHHHHHHh
Confidence                                                                   00 01233333333 3333334446


Q ss_pred             cccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          474 TAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       474 ~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      |....+..+..|++.||..+|+......+|+.+++.+.....+..++...|...++++++..++.++..|
T Consensus       400 p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       400 PLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7778899999999999999999999999999999988887777777877888888888777776655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.92  E-value=3e-23  Score=212.45  Aligned_cols=301  Identities=14%  Similarity=0.077  Sum_probs=203.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l  114 (579)
                      +|+..|+.- -+...+.+.|.+.+|+|++..+ .   |.+.++++.+++++++++|+++||+|.|+++.++.+.+++..+
T Consensus        32 lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~---G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~  107 (511)
T TIGR00806        32 LCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT---NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWL  107 (511)
T ss_pred             HHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            444433333 2777888999999999999998 6   9999999999999999999999999999999999999999999


Q ss_pred             HHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060          115 IMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (579)
Q Consensus       115 l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i  194 (579)
                      +.++++++..+.+.|++.|++.|..+ +...++..|+|+++|+++.++..++..+|.++++++++++. ..+ ||+.+.+
T Consensus       108 L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~L  184 (511)
T TIGR00806       108 LLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYSTL  184 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHHH
Confidence            99999999999999999999999999 99999999999999999999999999999999999999954 455 9986543


Q ss_pred             h---hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          195 A---GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       195 ~---~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      .   .....+.+++.+++|..+|-+..+.+.+............  .+..........+......-..-..++++..+++
T Consensus       185 n~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~  262 (511)
T TIGR00806       185 NIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQM--VPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNP  262 (511)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccC--CCCCccccchhhhhhhhHHHHHHHHHHHHHhcCc
Confidence            3   3333444455677886555333332211100000000000  0000000000000000000011234566677777


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      .+..+.+...     +...+++.+.+|.....++.....+...|..-.+..+.+.++++..|++-.+..+...+.++..
T Consensus       263 ~vl~WSlWwa-----~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~  336 (511)
T TIGR00806       263 QLLLWSLWWV-----FNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVV  336 (511)
T ss_pred             chhhhhHHHH-----HHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence            7766555433     3344677777777666665543222244555566666688888999998655544334444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.92  E-value=2.9e-22  Score=209.90  Aligned_cols=374  Identities=14%  Similarity=0.019  Sum_probs=248.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHH--HHHHHHHHHHHHHhH-hhhhccccchHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESI--VSMAVAGAIIGAAIG-GWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l--~s~~~lg~~i~~l~~-G~lsDr~Grr~vl~~~~~l~  109 (579)
                      ...+...++.+++......+.+|.+.++.|.+..+.   |++  .++..+...+.++++ ++.+||+||||..++.+.+.
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i---Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~   79 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL---AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCL   79 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHH
Confidence            455667788899999999999999999999988888   886  466677787888888 55799999999876555332


Q ss_pred             -HHHHHHHH-h--cch-hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          110 -FVGAVIMA-A--APN-PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       110 -~i~~ll~~-~--a~~-~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                       ++.....+ +  ..+ ...++..-++.++..+...+...++..|..++++++...+....+..+|..+|+.+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22222222 1  222 333444555566677777777778888988888888888888888899999999988888888


Q ss_pred             cCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhH
Q 008060          185 PGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINL  264 (579)
Q Consensus       185 ~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (579)
                      .+ ||..|++.+++.++..+..++++|+++.   +.+                                  .++.+..+.
T Consensus       160 ~g-w~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~----------------------------------~~~~~~~~~  201 (390)
T TIGR02718       160 FG-QRPAFLLVACVPLASLVCVLWLKDRAVA---SPE----------------------------------APLARRASL  201 (390)
T ss_pred             hC-HHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccc----------------------------------cchhhHHHH
Confidence            87 9999999998877766665555443210   000                                  000012346


Q ss_pred             HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCch
Q 008060          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTS-GLNAAGSIVSIYFIDRTGRKK  343 (579)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~~~~~  343 (579)
                      ++.+|+|..+...+..++.     .........+.+.|+++.+. +.+..+....... ...+++.++.|++.||+|+|+
T Consensus       202 ~~~l~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~l~~~G~-s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~  275 (390)
T TIGR02718       202 FRFFRRPLAWSLLALALLS-----AMTAVSGFGLSKLYLVDAGW-PLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR  275 (390)
T ss_pred             HHHHcCcCHHHHHHHHHHH-----HHHHHHHHHHhhHHHHhcCC-CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            6778888766544433222     22334455567788888766 5566666655554 456788899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCC
Q 008060          344 LLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFP  423 (579)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (579)
                      .+..+..+..+..............                                                       
T Consensus       276 ~l~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  300 (390)
T TIGR02718       276 TFILGVGLAGSLALLWFAQAAFWLA-------------------------------------------------------  300 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccC-------------------------------------------------------
Confidence            9887766553333222221110000                                                       


Q ss_pred             ccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc-ccchhhhHHHHHHHHH
Q 008060          424 GACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL-RFRGVCGGIAATANWI  502 (579)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~gi~~~~~~~  502 (579)
                                                |  ..+.......+.....+.. .+...+...+..++ +.+|+.+++.+...++
T Consensus       301 --------------------------~--~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l  351 (390)
T TIGR02718       301 --------------------------P--GIAVAWSCSAFGSLITGIT-SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDL  351 (390)
T ss_pred             --------------------------C--cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence                                      0  0111111111111112222 22333444455555 8899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060          503 SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       503 g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  537 (579)
                      |..++|.+.|.+.|..|+...|...+++.+++.+.
T Consensus       352 g~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       352 GELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988998888877776554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.92  E-value=1.2e-22  Score=217.62  Aligned_cols=415  Identities=9%  Similarity=0.033  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFF  110 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~  110 (579)
                      +..+++..+...+....+.+ +..++.+++|.+..+.   +++.+.+.....+..+++|+++|| +||||+++++.++++
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a---~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~   92 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA---FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLA   92 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHH
Confidence            44444444555555544443 4446678899988888   889999998888889999999999 999999999999999


Q ss_pred             HHHHHHHhcchhhH-HHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCc
Q 008060          111 VGAVIMAAAPNPGA-LITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPGT  187 (579)
Q Consensus       111 i~~ll~~~a~~~~~-ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~  187 (579)
                      ++.++++++.+... ++++|+++|+|.|...|...+++.|.+|++  +|++++++++.+.++|.++||.+++++.+..+ 
T Consensus        93 ~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-  171 (489)
T PRK10207         93 IGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-  171 (489)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-
Confidence            99999999876554 558999999999999999999999999877  45789999999999999999999999999887 


Q ss_pred             chhHHHHhhHHHHHHHHHHHhccCChhHHH--hcC-CHHHHHHHH------------HhhcCCCchhhhHHHhh---hhh
Q 008060          188 WRWMLGVAGIPALLQFILMLLLPESPRWLY--RKG-REEEAQAIL------------RKVYPAHEVETEIRDLK---ESV  249 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~--~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~---~~~  249 (579)
                      ||+.|++.++..++.++.+.+.++..+...  .++ +.|.....+            .................   ...
T Consensus       172 w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  251 (489)
T PRK10207        172 YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTI  251 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999876533333333444332211100  001 011111000            00000000000000000   000


Q ss_pred             hhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc---hhHHHHHHHHHHHHH
Q 008060          250 DKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL-SGFAS---NRTALLLSLVTSGLN  325 (579)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~  325 (579)
                      .--..+.+ .     .+.+|+|.+....+.   ......+..+....+..+.+.++ .....   ......+.....+..
T Consensus       252 ~f~~~~~~-~-----~~~~r~r~~~~~~l~---~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~i  322 (489)
T PRK10207        252 IFFREAFK-L-----DKTGRNKMFVAFVLM---LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWV  322 (489)
T ss_pred             HHHHHHhc-C-----CHHHHHHHHHHHHHH---HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHH
Confidence            00000000 0     134444443321111   11122223334444556666653 22210   001223333344456


Q ss_pred             HHHHHHHHHHHhhcCCchh-------hHHHHHHHHHHHHHHHHHhc-ccCCCCCccccccccccCCCCCCCCcccccccc
Q 008060          326 AAGSIVSIYFIDRTGRKKL-------LVISLSGVILSLGVLSAVFH-ETTSHSPMVSAVETSHFSNLTCPDYSSAATADR  397 (579)
Q Consensus       326 ~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (579)
                      ++.+++.+++.||+++|+.       +.+|+++.+++++.+..... ....+                            
T Consensus       323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~----------------------------  374 (489)
T PRK10207        323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ----------------------------  374 (489)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------------------------
Confidence            6777888999999998873       66777777777655432211 00000                            


Q ss_pred             ccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccc
Q 008060          398 WDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPW  477 (579)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (579)
                                                                          +....|+.+....+...+.. ...+...
T Consensus       375 ----------------------------------------------------~~~s~~~~i~~~~l~g~Ge~-~~~~~g~  401 (489)
T PRK10207        375 ----------------------------------------------------GLTSPWFIVLVYLFQSLGEL-FISALGL  401 (489)
T ss_pred             ----------------------------------------------------CccCHHHHHHHHHHHHHHHH-HHhHHHH
Confidence                                                                00012333333333333322 2345556


Q ss_pred             eeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH----------hcccchhhHHHHHHHHHHHHHhhhh
Q 008060          478 IVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ----------AIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       478 ~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      ..+.+..|++.+|.++|+.+....+|+.++..+......          ...+.+.|...++.+++..++.++.
T Consensus       402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999999999999999877754421          1124566777777777666665443

>PTZ00207 hypothetical protein; Provisional

Probab=99.91  E-value=3e-22  Score=214.74  Aligned_cols=417  Identities=13%  Similarity=0.092  Sum_probs=262.4

Q ss_pred             CchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHH
Q 008060           25 KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        25 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      +.++||..+..........+. ...++...+.+++++|.+..+.   +++.++. ....+++++.|+++||+|||+++++
T Consensus        22 ~e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l---~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vlli   96 (591)
T PTZ00207         22 NEPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDL---STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVL   96 (591)
T ss_pred             cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHH---HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            445677766655555444443 3456677789999999998887   7777764 3455678899999999999999999


Q ss_pred             HHHHHHHHHHHHHhc------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHH-HHHH
Q 008060          105 ADFLFFVGAVIMAAA------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFL-SYLI  177 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~i-g~~l  177 (579)
                      +.++++++.++++++      .+++.+.+.|++.|+|.+...+.+...+.+||| ++||+++|+...+.++|.++ +++.
T Consensus        97 g~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~  175 (591)
T PTZ00207         97 SMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQ  175 (591)
T ss_pred             HHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987      689999999999999999999999999999997 67999999999999999976 5555


Q ss_pred             HHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC--hhHHHhcCCHHHHHHHHHhh----------------------
Q 008060          178 NLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES--PRWLYRKGREEEAQAILRKV----------------------  232 (579)
Q Consensus       178 ~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes--p~~l~~~~~~~~~~~~~~~~----------------------  232 (579)
                      .+++.+   +|+..|++.+++.++..++ +.++++.  |++...+++.++.++..++.                      
T Consensus       176 ~~l~~~---~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~  252 (591)
T PTZ00207        176 LAFFSD---NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVIL  252 (591)
T ss_pred             HHHHHH---hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHH
Confidence            555442   4999898888877776665 4444433  34332222111111110000                      


Q ss_pred             ----------------cCCCchh--------------------------------hhHHHhhhhhh-------hhH----
Q 008060          233 ----------------YPAHEVE--------------------------------TEIRDLKESVD-------KEI----  253 (579)
Q Consensus       233 ----------------~~~~~~~--------------------------------~~~~~~~~~~~-------~~~----  253 (579)
                                      .+.....                                +...+..+..+       .+.    
T Consensus       253 ~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (591)
T PTZ00207        253 IILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVE  332 (591)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccc
Confidence                            0000000                                00000000000       000    


Q ss_pred             -H-h-hccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchh-HHHHHHHHHHHHHHHH
Q 008060          254 -E-E-EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS-GFASNR-TALLLSLVTSGLNAAG  328 (579)
Q Consensus       254 -~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~  328 (579)
                       + + ..+....++++.+++..+|...+.     +++....-..+..-+-++.+.. +..... ....+....++++.+|
T Consensus       333 ~~~~~~~P~~~~t~~q~l~~~d~Wll~~~-----~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~G  407 (591)
T PTZ00207        333 TDVDYIAPQFQETFIEGLKTARLWCLLWS-----IFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVG  407 (591)
T ss_pred             ccccCCCCCCcchHHHHHhchhHHHHHHH-----HHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhh
Confidence             0 0 001111267777877777654333     2222333333444456666666 441222 1222567788889999


Q ss_pred             HHHHHHHHhhcCCch--------h-hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccc
Q 008060          329 SIVSIYFIDRTGRKK--------L-LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWD  399 (579)
Q Consensus       329 ~~~~g~l~d~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (579)
                      ++..|++.....+|+        + +.+..+ +.++.+++....+.                                  
T Consensus       408 Rl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~----------------------------------  452 (591)
T PTZ00207        408 RLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK----------------------------------  452 (591)
T ss_pred             HHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc----------------------------------
Confidence            999999883332222        1 222222 44444444443210                                  


Q ss_pred             ccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccccee
Q 008060          400 CMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV  479 (579)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (579)
                                                                             -...+..++.+..++. ..++....
T Consensus       453 -------------------------------------------------------~~L~~~~~lvg~~~G~-~~~~~~~i  476 (591)
T PTZ00207        453 -------------------------------------------------------AALPLPYFIAAFANGF-MAATIALV  476 (591)
T ss_pred             -------------------------------------------------------cHhHHHHHHHHHHhhH-hHHHHHHH
Confidence                                                                   0112333333333333 24566689


Q ss_pred             eccccccccchhhhHHHHHHHHHHHHHH-HHHHHHHHHhc----------c---cchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          480 NSEIYPLRFRGVCGGIAATANWISNLIV-AQSFLSLTQAI----------G---TSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       480 ~~~~~p~~~~g~~~gi~~~~~~~g~~i~-~~~~g~~~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      ++|+|. ++-|+-.-+.....-+|..+- -.++|.++|.-          |   ++.+|++.+++++.+.+....+.-+|
T Consensus       477 ~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        477 TRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             HHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence            999999 888998888888888888777 56788888753          2   56799999999999998876666555


Q ss_pred             CC
Q 008060          546 KG  547 (579)
Q Consensus       546 ~~  547 (579)
                      |+
T Consensus       556 r~  557 (591)
T PTZ00207        556 RR  557 (591)
T ss_pred             HH
Confidence            53

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.90  E-value=9.7e-21  Score=199.27  Aligned_cols=413  Identities=14%  Similarity=0.099  Sum_probs=266.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHHHH-HHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSILV-ADFLFF  110 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl~~-~~~l~~  110 (579)
                      ++...+...+......+.++.+.+++|.+....   +++..+..+...+.+++.|+++|    |+||||.+++ +.....
T Consensus         9 ~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~---~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         9 VASVAAGVQFGWALQLSLLTPYVQELGIPHAWA---SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            334444445556666777777889999987777   99999999999999999999999    5999999877 466667


Q ss_pred             HHHHHHHhcchhh-----------------HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccc--hhhhhhhHHHHHHHH
Q 008060          111 VGAVIMAAAPNPG-----------------ALITGRVFVGLGVGMASMTSPLYISEASPAKIR--GALVSTNGFLITSGQ  171 (579)
Q Consensus       111 i~~ll~~~a~~~~-----------------~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R--~~~~~~~~~~~~iG~  171 (579)
                      ++.++.+++++++                 .++++-.+..++.....++..++++|.+|+++|  +.+.++.+.+.++|.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            7777777776643                 223333444557888888899999999998865  589999999999999


Q ss_pred             HHHHHHHHHh--ccCc------------CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCC
Q 008060          172 FLSYLINLAF--TRAP------------GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAH  236 (579)
Q Consensus       172 ~ig~~l~~~l--~~~~------------~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~  236 (579)
                      ++|+.+++..  .+..            .+.|+.|++.++..++..+. .+..+|.|.....+.+.++.           
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~-----------  234 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA-----------  234 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc-----------
Confidence            9999999865  2111            14788999988877776666 66678875311000000000           


Q ss_pred             chhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCch----
Q 008060          237 EVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQL-SGFASN----  311 (579)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----  311 (579)
                                   +   +.++......++++++.-+.....+..+++..++...++..+..|.+.++.+ ....++    
T Consensus       235 -------------~---~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~  298 (477)
T TIGR01301       235 -------------A---PPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA  298 (477)
T ss_pred             -------------c---cccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence                         0   0000001112233333222222222233344455566777777777777653 222111    


Q ss_pred             ------hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCC
Q 008060          312 ------RTALLLSLVTSGLNAAGSIVSIYFIDRTGR-KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNL  384 (579)
Q Consensus       312 ------~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (579)
                            ....+......+...+.+++..++++|+|+ |++..++.++.+++++...+......+... .        +. 
T Consensus       299 ~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~-~--------~~-  368 (477)
T TIGR01301       299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRY-Y--------DG-  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc-c--------cc-
Confidence                  112344445555556777788899999985 677688888888888877765431110000 0        00 


Q ss_pred             CCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHH
Q 008060          385 TCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALY  464 (579)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (579)
                               ..+.|                                                 +.|....+..++.....
T Consensus       369 ---------~~~~~-------------------------------------------------~~~~~~~~~~l~~~~~~  390 (477)
T TIGR01301       369 ---------DGESL-------------------------------------------------PPPTGIKASALIVFAIL  390 (477)
T ss_pred             ---------ccccc-------------------------------------------------CcchhhHHHHHHHHHHh
Confidence                     00000                                                 00111123344444444


Q ss_pred             HHhhccCcccccceeecccccc--ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHhhh
Q 008060          465 IIFFSPGMGTAPWIVNSEIYPL--RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--TSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      ++.+.. ..+++++++++..|+  +..|..+|+.|.+..+...+.....|.+.+..|  ....+.+.++.+++++++.++
T Consensus       391 Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       391 GIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             hHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            444433 356778999998884  556999999999999999999998888777665  566888889999999999999


Q ss_pred             hccCCCC
Q 008060          541 FVPETKG  547 (579)
Q Consensus       541 ~~~~~~~  547 (579)
                      .+|+++.
T Consensus       470 ~~~~~~~  476 (477)
T TIGR01301       470 LLPRPRV  476 (477)
T ss_pred             hCCCCCC
Confidence            9998764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.88  E-value=6.3e-20  Score=190.75  Aligned_cols=376  Identities=17%  Similarity=0.093  Sum_probs=261.9

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-chHHHHHHHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-RRTSILVADFLFFVGAVIM  116 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-rr~vl~~~~~l~~i~~ll~  116 (579)
                      ..++..........|.++..-++.|.+..+.   |.+.++..+...++++++|.++||++ +||++.+..++.++.....
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI---G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI---GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3345555566667788888889999988888   99999999999999999999999986 5778878888888777777


Q ss_pred             HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH-HHHhccCcC--cchhHHH
Q 008060          117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI-NLAFTRAPG--TWRWMLG  193 (579)
Q Consensus       117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l-~~~l~~~~~--~Wr~~f~  193 (579)
                      ...++++.+++..++..+......|..-++..+...  ++++-.|-.....++|.+++... ++.+....+  +....++
T Consensus        86 ~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~  163 (400)
T PF03825_consen   86 AFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFY  163 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            888899999888888888888888888888888876  34666677777778887777544 222322221  1334566


Q ss_pred             HhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060          194 VAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (579)
Q Consensus       194 i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (579)
                      +.+...++.....+.+|+.|+..    +                              .++..++....+..+++|+|++
T Consensus       164 i~~~~~~ll~~~~l~lp~~~~~~----~------------------------------~~~~~~~~~~~~~~~llk~~~~  209 (400)
T PF03825_consen  164 IAAILSLLLAGFALFLPKTPPKR----S------------------------------AKESVKKLLGLDALKLLKNPRF  209 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCcccc----c------------------------------cCCCcccccchHHHHHhcCccH
Confidence            66655555555556678775200    0                              0001111122345689999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (579)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (579)
                      ....+..+..     .........|.+.|+++.++.+....+....+..+..++.-...+++.+|+|.|+++.++.+..+
T Consensus       210 ~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~  284 (400)
T PF03825_consen  210 LVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYA  284 (400)
T ss_pred             HHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            6544443333     23456677788899999886555666666677788899999999999999999999999998888


Q ss_pred             HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060          354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV  433 (579)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (579)
                      +=..++....++                                                                    
T Consensus       285 vR~~l~a~~~~~--------------------------------------------------------------------  296 (400)
T PF03825_consen  285 VRWLLYAYFSDP--------------------------------------------------------------------  296 (400)
T ss_pred             HHHHHHHHhcCC--------------------------------------------------------------------
Confidence            877777665221                                                                    


Q ss_pred             ccccccccccccccCCCCCcchHHHHHHH----HHHHhhccCcccccceeeccccccccchhhhHHHHHH-HHHHHHHHH
Q 008060          434 KDLCHDESREWYTRGCPSKFGWLALVGLA----LYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA-NWISNLIVA  508 (579)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~-~~~g~~i~~  508 (579)
                                          .+.......    +-+..++.. ......++.+..|++.|+++.|+.+.. ..+|++++.
T Consensus       297 --------------------~~~~~~~~~l~q~lhG~tf~~~-~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~  355 (400)
T PF03825_consen  297 --------------------WPFIVALQLLGQLLHGLTFGLF-HAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGS  355 (400)
T ss_pred             --------------------cHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHH
Confidence                                111111111    223333222 223347889999999999999998765 679999999


Q ss_pred             HHHHHHHHhcccch------hhHHHHHHHHHHHHHhhhhccCCC
Q 008060          509 QSFLSLTQAIGTSW------TFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       509 ~~~g~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .+.|.++|..|.+.      .+.+.+++.++..++.+++.||++
T Consensus       356 ~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  356 LIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            99999999987554      345555555555555555555543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.88  E-value=4.5e-20  Score=198.76  Aligned_cols=163  Identities=17%  Similarity=0.270  Sum_probs=130.2

Q ss_pred             HHHHHHhhhhhhhhhhhhh-hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALL-YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~i~~l  114 (579)
                      ++..+...+....+...++ ++.+++|.+..+.   +++.+.+........+++|+++|| +|||++++++.++.+++.+
T Consensus        27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a---~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~  103 (500)
T PRK09584         27 FSIELWERFGYYGLQGIMAVYLVKQLGMSEADS---ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYA  103 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            3444444444444444444 5668899988877   777777776666667899999999 5999999999999999999


Q ss_pred             HHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc--chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          115 IMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       115 l~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~--R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      ++++++ +.+.+++.|+++|++.|...+...+++.|++|+++  |..++++++.+.++|..+||.+++++.+..+ ||+.
T Consensus       104 l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~  182 (500)
T PRK09584        104 LVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVA  182 (500)
T ss_pred             HHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHH
Confidence            998874 56677788999999999999999999999998653  4568899999999999999999999998887 9999


Q ss_pred             HHHhhHHHHHHH
Q 008060          192 LGVAGIPALLQF  203 (579)
Q Consensus       192 f~i~~i~~l~~~  203 (579)
                      |++.++..++..
T Consensus       183 F~i~~i~~~i~~  194 (500)
T PRK09584        183 FALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            998876444433

>PRK09669 putative symporter YagG; Provisional

Probab=99.86  E-value=1.9e-19  Score=191.81  Aligned_cols=337  Identities=14%  Similarity=0.066  Sum_probs=217.1

Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchHH-HHHHHHHHHHHHHHHHhcch----
Q 008060           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTS-ILVADFLFFVGAVIMAAAPN----  121 (579)
Q Consensus        51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~v-l~~~~~l~~i~~ll~~~a~~----  121 (579)
                      ..+.+.+.+++|++....   |.+.++..+..++..|+.|.++||    +||||. ++.+.+..+++.++....++    
T Consensus        30 ~~l~~~~t~~~gls~~~~---g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~  106 (444)
T PRK09669         30 LFLAYFYTDVFGLSAAIM---GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGAT  106 (444)
T ss_pred             HHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            344556788899988888   999999999999999999999998    787555 55677777777665554443    


Q ss_pred             --hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------CcchhHH
Q 008060          122 --PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWML  192 (579)
Q Consensus       122 --~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------~~Wr~~f  192 (579)
                        ++.+++..++.+.+......+-.++..|+. ++++|++..++...+..+|..+++.+...+....      .+|+..+
T Consensus       107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~  186 (444)
T PRK09669        107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAM  186 (444)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH
Confidence              455666666777766667777778899988 4678999888888888888777766554433211      1488888


Q ss_pred             HHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          193 GVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       193 ~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      .+.++++++..+. ++..+|.++.   +                                  ++++.....+.++++|+|
T Consensus       187 ~i~~ii~~v~~~~~~~~~~e~~~~---~----------------------------------~~~~~~~~~~~~~~~~n~  229 (444)
T PRK09669        187 MVMGLLGVVLFFCCFFMTKERYTP---E----------------------------------VDNSSSVWKDLKLLLGNS  229 (444)
T ss_pred             HHHHHHHHHHHHHHhCCeEEecCC---C----------------------------------CcCCCCHHHHHHHHhCCc
Confidence            8777766655544 3334443110   0                                  001112234567788888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (579)
                      .++...+..++....     ........+.|.+.... +.+....+.....+..+++.++.++++||+|+|+.+..+..+
T Consensus       230 ~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~  303 (444)
T PRK09669        230 QWRIMFIFNVVLLTA-----VVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVA  303 (444)
T ss_pred             hHHHHHHHHHHHHHH-----HHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            877654443332221     22222222333333322 333444455555677788889999999999999998877665


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS  431 (579)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (579)
                      .+++...+.....                                                                   
T Consensus       304 ~~~~~~~~~~~~~-------------------------------------------------------------------  316 (444)
T PRK09669        304 FVILSALIFFIPP-------------------------------------------------------------------  316 (444)
T ss_pred             HHHHHHHHHHhCc-------------------------------------------------------------------
Confidence            5543332222111                                                                   


Q ss_pred             ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHHH
Q 008060          432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWISN  504 (579)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g~  504 (579)
                                          +..+...+..++...+.+ ...+..+++.+|..+       .+..|...|+.+++..+|.
T Consensus       317 --------------------~~~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~  375 (444)
T PRK09669        317 --------------------SNVWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGL  375 (444)
T ss_pred             --------------------chHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHH
Confidence                                012222333333333332 334666788888764       3456778899999999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q 008060          505 LIVAQSFLSLTQAIGTS  521 (579)
Q Consensus       505 ~i~~~~~g~~~~~~g~~  521 (579)
                      ++++.+.|.+.+..||.
T Consensus       376 alg~~i~g~ll~~~Gy~  392 (444)
T PRK09669        376 AIGGAVVGWILAWVDYV  392 (444)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999999988873

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.85  E-value=4e-19  Score=190.78  Aligned_cols=357  Identities=13%  Similarity=0.051  Sum_probs=221.6

Q ss_pred             HHHHHhhhhhhhhhhh-hhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccch-HHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGA-LLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRR-TSILVADFLFFV  111 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~-lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr-~vl~~~~~l~~i  111 (579)
                      ++.+...+.....++. ..++.+.+|++....   |.+..+.-+.-++..|+.|.++|    |+||| +.++++.+..++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~v---g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i   89 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV---GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSV   89 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHH
Confidence            3444444444444443 445677789988777   99999999999999999999999    66994 556668777777


Q ss_pred             HHHHHHhcch------hhHHHHHHHHHHhhchhhhhhHhHhhhhcC-CcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          112 GAVIMAAAPN------PGALITGRVFVGLGVGMASMTSPLYISEAS-PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       112 ~~ll~~~a~~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~-p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      +..+....++      +..+++..++.+++.....++-.++..|.. ++++|.+..++...+.++|..+.+.+...+...
T Consensus        90 ~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~  169 (473)
T PRK10429         90 VLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY  169 (473)
T ss_pred             HHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666544332      334556667778888888888889999998 588999999987777777766655554433221


Q ss_pred             c------CcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhc
Q 008060          185 P------GTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEG  257 (579)
Q Consensus       185 ~------~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (579)
                      .      .+|+....+.+++.++..+. ++..+|.++..    ..                            +..++++
T Consensus       170 ~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~----~~----------------------------~~~~~~~  217 (473)
T PRK10429        170 VGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSD----NQ----------------------------VSAEGSH  217 (473)
T ss_pred             hCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcc----cc----------------------------ccccccC
Confidence            1      13666666666665554444 34456643100    00                            0000011


Q ss_pred             cchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          258 SSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID  337 (579)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d  337 (579)
                      ..-+..++.++++|.++..++..++..     ........+.+.|.+...+ +....+.+.....++.+++.++.+++.|
T Consensus       218 ~~~~~~~~~~~~n~~~~~ll~~~~~~~-----~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~  291 (473)
T PRK10429        218 LTLKDIVALIYKNDQLSCLLGMALAYN-----IASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVK  291 (473)
T ss_pred             CCHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112233445567776655444333222     2333444444555554444 3344455555666778899999999999


Q ss_pred             hcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060          338 RTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (579)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (579)
                      |+|+|+.+..+..+.+++.+.+........                                                  
T Consensus       292 r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------  321 (473)
T PRK10429        292 SLSRRILWAGASIFPVLSCGVLLLMGLAAP--------------------------------------------------  321 (473)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHhccCc--------------------------------------------------
Confidence            999999988887766655554433211000                                                  


Q ss_pred             CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccch
Q 008060          418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRG  490 (579)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g  490 (579)
                                                        +..+..++...+...+.+. ..+..+++.+|..+       .|..|
T Consensus       322 ----------------------------------~~~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G  366 (473)
T PRK10429        322 ----------------------------------HNALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCES  366 (473)
T ss_pred             ----------------------------------hhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchh
Confidence                                              0122222222222222222 23455677888754       45567


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008060          491 VCGGIAATANWISNLIVAQSFLSLTQAIGT  520 (579)
Q Consensus       491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~  520 (579)
                      ..+|...+...++..+++.+.|.+.+..||
T Consensus       367 ~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        367 IAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            789999999999999999999999988776

>TIGR00788 fbt folate/biopterin transporter

Probab=99.85  E-value=9.5e-20  Score=194.61  Aligned_cols=404  Identities=13%  Similarity=0.037  Sum_probs=252.2

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVAD  106 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~~~  106 (579)
                      .+.++...++..++.......+.|.+.+++|++..+.   +...+...+...+-.+ +|+++||++     ||+.++++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i---~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~  102 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY---QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSG  102 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHH
Confidence            3444555567777774445566667778899999888   8899999999999555 999999998     778778877


Q ss_pred             HHHH-HHHHHHHhcchhhHHH-HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhh---HHHHHHHHHHHHHHHHHh
Q 008060          107 FLFF-VGAVIMAAAPNPGALI-TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTN---GFLITSGQFLSYLINLAF  181 (579)
Q Consensus       107 ~l~~-i~~ll~~~a~~~~~ll-~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~---~~~~~iG~~ig~~l~~~l  181 (579)
                      ++.+ ++....+..++..... +.+++.+++.+...++.-++..|..+ +++....+..   ....++|..+++.+++.+
T Consensus       103 ~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       103 LLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            7663 4434444445544444 48899999999999999999999998 5554433333   334458999999999999


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchh
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEK  261 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (579)
                      .+..+ ||..|++.+++.++..+..++++|++.....+.+.++..               .   .........+......
T Consensus       182 ~~~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~  242 (468)
T TIGR00788       182 LDKTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM---------------N---MALLTLGVLANVKVQI  242 (468)
T ss_pred             HHhcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchh---------------h---hhhhhhhHHHHHHHHH
Confidence            98877 999999998877777655677788631000000000000               0   0000000000001112


Q ss_pred             hhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008060          262 INLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR  341 (579)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~  341 (579)
                      .+.++.+++|..++.++..++...  ...+. ....+.  +.....+.++...+......+++.+++..+.+++.+|++.
T Consensus       243 ~~l~~~l~~~~i~~~l~fifl~~~--~~~~~-~~~~f~--~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~  317 (468)
T TIGR00788       243 LGLRGAIQLLEIAKPLIFIFLSYA--NLPGA-SGSVFC--ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY  317 (468)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHh--hcCCC-CceeEE--EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence            345566777777664443322111  01111 000000  1112234467778888888889999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060          342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL  421 (579)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (579)
                      |+++.++.++.+++.+.......                                ||.                      
T Consensus       318 r~~l~~~~~l~~~~~~~~~~l~~--------------------------------~~~----------------------  343 (468)
T TIGR00788       318 RLLFGVTTLLYTLSSLFDLILVK--------------------------------RWN----------------------  343 (468)
T ss_pred             HHHHHHHHHHHHHHHhCceeeee--------------------------------ccc----------------------
Confidence            99988888777776654322110                                010                      


Q ss_pred             CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060          422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW  501 (579)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~  501 (579)
                                             ...+.|+  .+.......+....++....+. ..++.+..|++.+|+..++.+...+
T Consensus       344 -----------------------~~~gi~~--~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~  397 (468)
T TIGR00788       344 -----------------------LAFGISD--EVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILH  397 (468)
T ss_pred             -----------------------cccCCCC--eeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHH
Confidence                                   0000111  1111222223333333333333 5888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc-----cchhhHHHHHHHHHHHHHh--hhhccC
Q 008060          502 ISNLIVAQSFLSLTQAIG-----TSWTFLIFGVISVAALLFV--LIFVPE  544 (579)
Q Consensus       502 ~g~~i~~~~~g~~~~~~g-----~~~~~~~~~~~~~~~~~~~--~~~~~~  544 (579)
                      +|..+++.+.+.+.+..|     ++..+....+..+..++..  ..++|+
T Consensus       398 lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       398 LGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999888     6555554444333332221  235776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.85  E-value=1.4e-18  Score=174.45  Aligned_cols=400  Identities=14%  Similarity=0.089  Sum_probs=279.5

Q ss_pred             cCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH
Q 008060           24 WKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL  103 (579)
Q Consensus        24 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~  103 (579)
                      +-.++||.+++.+++..+.+++.+..++++.......|+ +....   -|+..+|++.+....+++-|+.|++|-|..++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~---~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~l  113 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA---DWLSMIYMVVSVPFGFAAMWILDKFGLRTALL  113 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH---HHHHHHHHHHHHHHhhHHHHhhcccchHHHHH
Confidence            467889999999999999999999999999888888888 44445   78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcc------hhh--HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060          104 VADFLFFVGAVIMAAAP------NPG--ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (579)
Q Consensus       104 ~~~~l~~i~~ll~~~a~------~~~--~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~  175 (579)
                      ++..+.++|..+-..+.      .++  ....+..+.+.++-........+-.-||++++|+.+..+-.++..+|.++|.
T Consensus       114 lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~  193 (480)
T KOG2563|consen  114 LGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGF  193 (480)
T ss_pred             HHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHh
Confidence            99999999999876653      345  6668888888888877777778888899999999999999999999999999


Q ss_pred             HHHHHhccCc----C-cchh--HHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhh
Q 008060          176 LINLAFTRAP----G-TWRW--MLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKE  247 (579)
Q Consensus       176 ~l~~~l~~~~----~-~Wr~--~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (579)
                      ++...++...    + .|.-  .|+..+.++++.+++ .+..++.|+.-.+..                           
T Consensus       194 llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s---------------------------  246 (480)
T KOG2563|consen  194 LLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSAS---------------------------  246 (480)
T ss_pred             hccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh---------------------------
Confidence            9999988764    1 3544  355444444444443 333444332110000                           


Q ss_pred             hhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Q 008060          248 SVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAA  327 (579)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (579)
                          ...+.+.....+.+++++++++....     ..+......++...+.+...+...+. +...+|+......+++++
T Consensus       247 ----~~~~~~~~f~~si~~~~~n~~F~il~-----~~ygi~~g~F~~l~~~l~~~l~~sgY-~~~~aG~ig~l~iv~Gml  316 (480)
T KOG2563|consen  247 ----QAALQDASFPKSIKSCFKNRQFIILA-----ICYGIGLGLFNSLSTLLNLALCPSGY-EGVFAGYIGALMIVAGML  316 (480)
T ss_pred             ----HhhhhcCcHHHHHHHHHcCccHHHHH-----HHHhhhHHHHHHHHHHhhhccccccC-CccccchhHHHHHHHHHH
Confidence                00011223467888999998884322     22222233344444444333334444 336788999999999999


Q ss_pred             HHHHHHHHHhhcCCchhh-HHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccC
Q 008060          328 GSIVSIYFIDRTGRKKLL-VISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKA  406 (579)
Q Consensus       328 ~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (579)
                      ++.+.|.+.||.++-+.. .+......++.+.+........                                       
T Consensus       317 ga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~---------------------------------------  357 (480)
T KOG2563|consen  317 GALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG---------------------------------------  357 (480)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC---------------------------------------
Confidence            999999999998765443 3333333333222222111100                                       


Q ss_pred             CCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc
Q 008060          407 SSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL  486 (579)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  486 (579)
                                                                    .. +.+...+...+++..+..|+-.-+..|..-|
T Consensus       358 ----------------------------------------------~~-viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP  390 (480)
T KOG2563|consen  358 ----------------------------------------------DS-VIVFTTCGLLGFFGTGYLPIGFELGVETTYP  390 (480)
T ss_pred             ----------------------------------------------ce-EehhhhHHHHHHhhcCCCCcceeeeeeeccc
Confidence                                                          01 1244445555666777778888888887555


Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060          487 RFRGVCGGIAATANWISNLIVAQSFLSLTQAIG----TSWTFLIFGVISVAALLFVLIFVPETKGLPI  550 (579)
Q Consensus       487 ~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (579)
                      ..-++..|+.+..+++-+.+-..+.+...+..+    +...-+.....+++..++..++.|+.++++.
T Consensus       391 v~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~  458 (480)
T KOG2563|consen  391 VAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA  458 (480)
T ss_pred             cCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence            666899999999999999999999999888777    5555566677777777776666665555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.83  E-value=3.2e-17  Score=173.78  Aligned_cols=360  Identities=21%  Similarity=0.175  Sum_probs=245.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHHhc-c-hhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060           70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMAAA-P-NPGALITGRVFVGLGVGMASMTSPLY  146 (579)
Q Consensus        70 ~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~~a-~-~~~~ll~~R~l~Gig~g~~~~~~~~~  146 (579)
                      +.++..++..+..++..|+.|.++|+-|+||.++ +...+..+++.+..+. + +++...+.-++.-++.+...+.-.++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478889999999999999999999998776655 4445555566665553 3 45555555566667888888888999


Q ss_pred             hhhcCCcccc--------------------------hhhhhhhHHHHHHHHHHHHHHHHHhccCcC-------cchhHHH
Q 008060          147 ISEASPAKIR--------------------------GALVSTNGFLITSGQFLSYLINLAFTRAPG-------TWRWMLG  193 (579)
Q Consensus       147 l~e~~p~~~R--------------------------~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-------~Wr~~f~  193 (579)
                      +.|..+++++                          ++..+.-.....+|..+..++.-.+....+       +-|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          899999888888888887777665543322       2488888


Q ss_pred             HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                      +.++.-++..+. ++++||.|+....+....-.....                            ++-...+++..|.|.
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------~~l~~t~k~~~~~~~  282 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF----------------------------KRLWRTFKEIRKLRQ  282 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH----------------------------HHHHHHHHHHHhChH
Confidence            888765555544 677888764200000000000000                            001223334444444


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--hhhHHHHH
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK--KLLVISLS  350 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~  350 (579)
                      ..+.     ++..++..-+..++......|.++..+.+..+...+.....+.+++|++++|++.||+|.|  +++..+..
T Consensus       283 ~~~f-----Lia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  283 LFLF-----LIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            4332     2334444557788888888888866666777778888888999999999999999999998  77766665


Q ss_pred             HHHH-HHHHHH-HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccc
Q 008060          351 GVIL-SLGVLS-AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLI  428 (579)
Q Consensus       351 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (579)
                      +..+ +...+. ........                          .+                                
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~--------------------------~~--------------------------------  379 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGL--------------------------KS--------------------------------  379 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCc--------------------------cc--------------------------------
Confidence            5522 222222 11110000                          01                                


Q ss_pred             cCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH
Q 008060          429 SNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA  508 (579)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~  508 (579)
                                               .|. ...+.++.+.+..+..+..-++.+|+.|++..+..+|+....+...+.+||
T Consensus       380 -------------------------~~~-f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGP  433 (477)
T PF11700_consen  380 -------------------------PWE-FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGP  433 (477)
T ss_pred             -------------------------HHH-HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH
Confidence                                     122 444444455555555677789999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060          509 QSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVPETKG  547 (579)
Q Consensus       509 ~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (579)
                      .++|.+.+.+| .+..+....++.++++++. ..++..|+
T Consensus       434 ll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g  472 (477)
T PF11700_consen  434 LLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence            99999999988 8888988888888888875 44554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.83  E-value=1.7e-17  Score=175.48  Aligned_cols=167  Identities=14%  Similarity=0.216  Sum_probs=128.8

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVG  112 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~  112 (579)
                      .+++..+...+....+...+|. +.+++|.++.+.   +.+.+.+.....++.+++|+++||+ ||||+++++.++.+++
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a---~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA---YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            3334444444444445455554 567789988888   8899999999999999999999999 9999999999999999


Q ss_pred             HHHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          113 AVIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       113 ~ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      .++.+... +...+.+...+.++|.|...+...++++|.+|++  +|..++++.+.+.++|..++|.+.+++.+..+ ||
T Consensus        90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~  168 (493)
T PRK15462         90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WA  168 (493)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hH
Confidence            87776543 2233444444555666777777788999999875  68999999999999999999999999988777 99


Q ss_pred             hHHHHhhHHHHHHHHH
Q 008060          190 WMLGVAGIPALLQFIL  205 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~  205 (579)
                      +.|.+.++..++.++.
T Consensus       169 ~~F~iaaigm~l~li~  184 (493)
T PRK15462        169 MGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999876544433333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.83  E-value=3.5e-18  Score=181.27  Aligned_cols=338  Identities=19%  Similarity=0.208  Sum_probs=245.5

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHH-HHHHHHHHHHHHHHHhc-c-----
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSI-LVADFLFFVGAVIMAAA-P-----  120 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl-~~~~~l~~i~~ll~~~a-~-----  120 (579)
                      ...+.+.+.+|+++...   |.+..+..+..++..|+.|.++|    |+||||.. ++|....+++.++.... +     
T Consensus        23 ~~~~f~~~~~gl~~~~~---g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~   99 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA---GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSF   99 (428)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhh
Confidence            45566778889988777   99999999999999999999999    89987765 46888888888877765 4     


Q ss_pred             --hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhH
Q 008060          121 --NPGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWM  191 (579)
Q Consensus       121 --~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~  191 (579)
                        ....+.+..++..++......+-.++..|..+ +++|.+..+....+..+|..+...+.+.+.+..+      +|++.
T Consensus       100 ~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~  179 (428)
T PF13347_consen  100 TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM  179 (428)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH
Confidence              23345667777789989888888999999998 5789999999988888888777766666654332      49999


Q ss_pred             HHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhc
Q 008060          192 LGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKT  270 (579)
Q Consensus       192 f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (579)
                      .++.+++.++..++ .+..+|.++                                   +.+.++++..-+...++++++
T Consensus       180 ~~v~~iv~~v~~~i~~~~~ke~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~n  224 (428)
T PF13347_consen  180 ALVLAIVGLVFFLITFFFVKERSV-----------------------------------EVTEQEKKISLRDSLRSLFRN  224 (428)
T ss_pred             HHHHHHHHHHHhhhhhheeeeccc-----------------------------------cccccccccccccchhhhccc
Confidence            98888887776666 555666211                                   000112222334567788888


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHH
Q 008060          271 RTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLS  350 (579)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  350 (579)
                      |.++......++.     ..+........+.|.+...+.+ ...+.......+..+++.++.++++||+|+|+.+..+..
T Consensus       225 r~~~~l~~~~~~~-----~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQ-----WLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHH-----HhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            8876544443332     2334444555566666655544 445566667788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN  430 (579)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (579)
                      +.+++.+.+.+....                                                                 
T Consensus       299 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  313 (428)
T PF13347_consen  299 LAALGFLLLFFLGPG-----------------------------------------------------------------  313 (428)
T ss_pred             HHHHHHHHHHHHHhh-----------------------------------------------------------------
Confidence            988888877766420                                                                 


Q ss_pred             cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccc-------cccchhhhHHHHHHHHHH
Q 008060          431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYP-------LRFRGVCGGIAATANWIS  503 (579)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~gi~~~~~~~g  503 (579)
                                            ..+..++...+.+.+.+ ......+++.+|+.+       .+..|..+|+.++...++
T Consensus       314 ----------------------~~~~~~i~~~l~gi~~~-~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  314 ----------------------SPWLVLILFILAGIGYG-AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             ----------------------hHHHHHHHHHHhHhhhc-ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence                                  12333444444444443 334677788888875       345699999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 008060          504 NLIVAQSFLSLTQAIGTS  521 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~  521 (579)
                      ..+++.+.+.+.+..|+.
T Consensus       371 ~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  371 QGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHHhCcC
Confidence            999999999998877654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.82  E-value=8.9e-19  Score=179.01  Aligned_cols=378  Identities=17%  Similarity=0.134  Sum_probs=235.8

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH---HHH
Q 008060           38 IGGLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF---VGA  113 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~---i~~  113 (579)
                      +..+...+..+..-|..+...+ +.|++.++.   |.+.++..+...+.+++.|.++||.|.||-++..+.+..   ...
T Consensus        14 ~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i---G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pf   90 (412)
T PF01306_consen   14 LFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI---GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPF   90 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccCCCHHHH---HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence            3444445556666677776554 589999999   999999999999999999999999997776554332221   122


Q ss_pred             HHHHhc----chhh-HHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060          114 VIMAAA----PNPG-ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       114 ll~~~a----~~~~-~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W  188 (579)
                      +...+.    .|++ ..+++-...|+......|..-+++.++.  ++.+.-.|-..+..++|.+++..++|.+.+.  +-
T Consensus        91 f~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i--~p  166 (412)
T PF01306_consen   91 FIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI--NP  166 (412)
T ss_dssp             HHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee--Cc
Confidence            222222    2322 2233333344444445555555554443  2336667778889999999999999999875  35


Q ss_pred             hhHHHHhhHHHHHHHHHHHhc-cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060          189 RWMLGVAGIPALLQFILMLLL-PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (579)
Q Consensus       189 r~~f~i~~i~~l~~~i~~~~l-pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (579)
                      +..|++....+++..++.+.. |+.++.....                              +....++++.+.++..++
T Consensus       167 ~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~l  216 (412)
T PF01306_consen  167 NIIFWIASAAAIILLLLLLLLKPDVPPQAEVA------------------------------DALGAKKDKVSLKDVLSL  216 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSS---SSSSS-SS------------------------------TTSSS------HHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh------------------------------cccccCCCCCcHHHHHHH
Confidence            677887666555555443333 3332100000                              000001111223456788


Q ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                      +|+|++|...+...+...     .+...-...|.|.......   ++...+++.....+..++...+..++.+|+|.|+.
T Consensus       217 ~k~~~fw~~~l~v~g~~~-----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~  291 (412)
T PF01306_consen  217 FKMRNFWFFVLFVIGVAA-----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL  291 (412)
T ss_dssp             TTSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             hcchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence            999999875554443322     2333333345555543332   33556777788888899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      ++++..++.+-.....+..+                                                            
T Consensus       292 Lllag~i~~iRi~~~~~~~~------------------------------------------------------------  311 (412)
T PF01306_consen  292 LLLAGVIMAIRIIGSGFATN------------------------------------------------------------  311 (412)
T ss_dssp             HHHHHHHHHHHHHHHHT--S------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhcc------------------------------------------------------------
Confidence            99998888887776665432                                                            


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWIS  503 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g  503 (579)
                                                   .|.....=.+-..-+..... ...-++++.+|+|..++...+. +...++|
T Consensus       312 -----------------------------~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~  361 (412)
T PF01306_consen  312 -----------------------------PWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIG  361 (412)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHH
T ss_pred             -----------------------------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHH
Confidence                                         22222222222222222211 2246888999999988988885 7888999


Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060          504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKG  547 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (579)
                      .++.+.+.|.++|+.|++.+|++++.+.++..++..+.+++.++
T Consensus       362 ~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  362 IIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            99999999999999999999999999999888888777765544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.82  E-value=9.6e-18  Score=179.03  Aligned_cols=349  Identities=13%  Similarity=0.058  Sum_probs=208.7

Q ss_pred             HHHHHhhhhhhhhhh-hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc----cchHHH-HHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISG-ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF----GRRTSI-LVADFLFFV  111 (579)
Q Consensus        38 l~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~----Grr~vl-~~~~~l~~i  111 (579)
                      ++.+..........+ +.+++.+.+|++..+.   |.+.+...+..++..++.|+++||.    ||||.. .++.+...+
T Consensus        15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~---g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~   91 (448)
T PRK09848         15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAA---GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMI   91 (448)
T ss_pred             cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHH
Confidence            333344444433333 3346777789988777   9999999999999999999999996    777755 555554444


Q ss_pred             HHHHH-Hhc----c--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHH-----HHHHHHHHHH
Q 008060          112 GAVIM-AAA----P--NPGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLIT-----SGQFLSYLIN  178 (579)
Q Consensus       112 ~~ll~-~~a----~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~-----iG~~ig~~l~  178 (579)
                      ..++. ...    .  ..+.+++..++.+++.+...++..++..+... +++|.+..++...+.+     ++..++|.++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~  171 (448)
T PRK09848         92 FSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIK  171 (448)
T ss_pred             HHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44432 211    1  12334445567788888888777777777664 4678887766554433     4555566665


Q ss_pred             HHhccCcC-cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhh
Q 008060          179 LAFTRAPG-TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEE  256 (579)
Q Consensus       179 ~~l~~~~~-~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (579)
                      +....... .|.....+.++++++..+. ....||+++.                                      +.+
T Consensus       172 ~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~--------------------------------------~~~  213 (448)
T PRK09848        172 NSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR--------------------------------------IVA  213 (448)
T ss_pred             HhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC--------------------------------------Ccc
Confidence            54321111 1221112222222222222 2333444210                                      000


Q ss_pred             ccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          257 GSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI  336 (579)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  336 (579)
                      ++..+..+++++|+|.++...+..++.     +.+......+.|.|+++..+.+....++......++.+++.++.+++.
T Consensus       214 ~~~~~~~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~  288 (448)
T PRK09848        214 QPSLKISLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMV  288 (448)
T ss_pred             CCCHHHHHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111233467788888886544443332     223344445567777766555555555555555566788999999999


Q ss_pred             hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccC
Q 008060          337 DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCAS  416 (579)
Q Consensus       337 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (579)
                      ||+++|+.+..+..+.+++.+.+.....                                                    
T Consensus       289 ~r~g~~~~~~~g~~~~~i~~~~~~~~~~----------------------------------------------------  316 (448)
T PRK09848        289 ARIGKKNTFLIGALLGTCGYLLFFWVSV----------------------------------------------------  316 (448)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHcCc----------------------------------------------------
Confidence            9999999999888877777665543210                                                    


Q ss_pred             CCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccc-------ccc
Q 008060          417 HSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPL-------RFR  489 (579)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~  489 (579)
                                                         ...|...+...+...+.+.. .+..+++.+|..|.       +.+
T Consensus       317 -----------------------------------~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~  360 (448)
T PRK09848        317 -----------------------------------WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIE  360 (448)
T ss_pred             -----------------------------------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccch
Confidence                                               01222223233333332222 34455676776654       356


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 008060          490 GVCGGIAATANWISNLIVAQSFLSLTQAIGT  520 (579)
Q Consensus       490 g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~  520 (579)
                      |..+|+.++...+|.++++.+.+.+.+..||
T Consensus       361 G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        361 GLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999887776

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.82  E-value=6.5e-20  Score=171.77  Aligned_cols=384  Identities=16%  Similarity=0.109  Sum_probs=256.1

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHH
Q 008060           27 PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVA  105 (579)
Q Consensus        27 ~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~  105 (579)
                      .+|.+.++..|+..+..++.....+.+..+...+.++...+.   .++.++|.....+.++++|++.|| +|.|..-++-
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf---tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~  116 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF---TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIIL  116 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee---eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHH
Confidence            457788888999999999999999999899999999988888   889999999999999999999996 5877766666


Q ss_pred             HHHHHHHHHHHHh---cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          106 DFLFFVGAVIMAA---APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       106 ~~l~~i~~ll~~~---a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      +....+|.++++.   .+.+|+++++||+.|+|.-...++...+..-||..++.+.++|+.....-+|..+-..+.+++.
T Consensus       117 ~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  117 CIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHH
Confidence            6666677776654   6889999999999999988888888999999999999999999999999999998888887776


Q ss_pred             cCcCcc-----hhHH---HHhh-HHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhH
Q 008060          183 RAPGTW-----RWML---GVAG-IPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEI  253 (579)
Q Consensus       183 ~~~~~W-----r~~f---~i~~-i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (579)
                      +..+..     +...   +..+ ..+....+....+    .|.     .+.+++.+.+..                  . 
T Consensus       197 ~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~l----g~~-----D~rAerilh~e~------------------g-  248 (459)
T KOG4686|consen  197 DTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSL----GLS-----DDRAERILHLEE------------------G-  248 (459)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHh----hhh-----hhHHHHHHhhhc------------------C-
Confidence            643200     0000   0000 0111111110000    000     011111111000                  0 


Q ss_pred             HhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 008060          254 EEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI  333 (579)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (579)
                       ...+..+..-..-+ .|.+|...++++     +..+.+..+....|.++++..+.++..++-+.....+.+.+.++++|
T Consensus       249 -~~Ge~pkLtdv~~f-~ppfw~~~iicv-----~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg  321 (459)
T KOG4686|consen  249 -FLGEEPKLTDVNTF-YPPFWVLVIICV-----LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFG  321 (459)
T ss_pred             -cccCCccccccccc-CccHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHH
Confidence             00000011111112 234444444333     33445677777888888877666777777666666777899999999


Q ss_pred             HHHhhcCCchhhHHHH-HHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCC
Q 008060          334 YFIDRTGRKKLLVISL-SGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCG  412 (579)
Q Consensus       334 ~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (579)
                      .++||.|++-.++.+. +...++-..+.+...+                                               
T Consensus       322 ~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls-----------------------------------------------  354 (459)
T KOG4686|consen  322 AISDKYGFNLWWVASACILTLLGHSGLFFTFLS-----------------------------------------------  354 (459)
T ss_pred             HhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc-----------------------------------------------
Confidence            9999999987766443 3333443333333211                                               


Q ss_pred             cccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhh
Q 008060          413 FCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVC  492 (579)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  492 (579)
                                                               +   .+.+.+.+..++.- ....|.+++.+.|.+..|++
T Consensus       355 -----------------------------------------P---y~~m~~lGLsysll-AcslWP~va~~vpE~qLGTa  389 (459)
T KOG4686|consen  355 -----------------------------------------P---YTSMTFLGLSYSLL-ACSLWPCVASLVPEEQLGTA  389 (459)
T ss_pred             -----------------------------------------H---HHHHHHHhhhHHHH-HHHHhhhhhhhCCHHHhcch
Confidence                                                     1   23333333333221 23357788889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcc-c---chhhHHHHHHHHHHHHHhhh
Q 008060          493 GGIAATANWISNLIVAQSFLSLTQAIG-T---SWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       493 ~gi~~~~~~~g~~i~~~~~g~~~~~~g-~---~~~~~~~~~~~~~~~~~~~~  540 (579)
                      .|.++...++|-++.|++.|.+.|.-| +   ..-|++.+.+++....+.+.
T Consensus       390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998766 3   33455555566655555443

>PRK11462 putative transporter; Provisional

Probab=99.81  E-value=4.2e-17  Score=174.12  Aligned_cols=255  Identities=13%  Similarity=0.051  Sum_probs=164.7

Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc----ccchHHHH-HHHHHHHHHHHHHHhcch------
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR----FGRRTSIL-VADFLFFVGAVIMAAAPN------  121 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr----~Grr~vl~-~~~~l~~i~~ll~~~a~~------  121 (579)
                      +...+.+.+|++....   |.+..+.-+.-++..|+.|.++||    +||||..+ ++.+..+++.+++-..++      
T Consensus        32 l~~fyt~~~Gl~~~~~---g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~  108 (460)
T PRK11462         32 MMFFYTDIFGIPAGFV---GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGK  108 (460)
T ss_pred             HHHHHHHhhCCCHHHH---HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchH
Confidence            4455678889988777   999999999999999999999995    79876654 576777777766654442      


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhHHHH
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWMLGV  194 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~f~i  194 (579)
                      +..+++.-.+..++......+-.++..|..+ +++|++..++...+..+|..+++.+...+....+      +|+....+
T Consensus       109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i  188 (460)
T PRK11462        109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAV  188 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            3445566667788888888888889999987 7899999999999999988888777655443221      37777666


Q ss_pred             hhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060          195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (579)
Q Consensus       195 ~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (579)
                      .+++.++..++ +...+|.++.                                      ++++...+...+..+++|.+
T Consensus       189 ~~ii~~i~~~i~~~~~kE~~~~--------------------------------------~~~~~~~~~~l~~~~~Nk~~  230 (460)
T PRK11462        189 LSVVAFMMLAFCFFTTKERVEA--------------------------------------PPTTTSMREDLRDIWQNDQW  230 (460)
T ss_pred             HHHHHHHHHHHHHhcceeccCC--------------------------------------CccCCCHHHHHHHHhCChHH
Confidence            66665555444 3334443210                                      00001123345667777776


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (579)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (579)
                      +......+..     .............|.+...+. ....+.+.....+.++++.++++++.||+++|+.+..+..+..
T Consensus       231 ~~l~~~~~~~-----~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~  304 (460)
T PRK11462        231 RIVGLLTIFN-----ILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLA  304 (460)
T ss_pred             HHHHHHHHHH-----HHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            5443322211     111222222222333333332 3333445566677788999999999999999988765544433


Q ss_pred             H
Q 008060          354 L  354 (579)
Q Consensus       354 ~  354 (579)
                      +
T Consensus       305 ~  305 (460)
T PRK11462        305 V  305 (460)
T ss_pred             H
Confidence            3

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.80  E-value=5.4e-18  Score=175.13  Aligned_cols=416  Identities=14%  Similarity=0.172  Sum_probs=260.5

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccc-hHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGR-RTSILV  104 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Gr-r~vl~~  104 (579)
                      ++.+|+.+.+..+..++.....+++.+..-+..++++.+.+... .|++.++..++.++++++.|+.+.|.+. |+.++.
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f-fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~  107 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF-FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIV  107 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch-hhHHHHHHHHHHHhcchhhcccccccCCcccCHHH
Confidence            45577888888888899999888887777666677554333221 2999999999999999999999999997 888899


Q ss_pred             HHHHHHHHHHHH-Hh---cc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHH
Q 008060          105 ADFLFFVGAVIM-AA---AP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL  179 (579)
Q Consensus       105 ~~~l~~i~~ll~-~~---a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~  179 (579)
                      |.++..++.++. +.   .+ ..+.++++|++.|+|.| ......+|+++....++|.++++....+..+|.++||.++.
T Consensus       108 s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~  186 (488)
T KOG2325|consen  108 SFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL  186 (488)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence            999999999988 33   23 68899999999999988 55667789999988899999999999989999999998887


Q ss_pred             HhccCc--C----------cchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhh
Q 008060          180 AFTRAP--G----------TWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLK  246 (579)
Q Consensus       180 ~l~~~~--~----------~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (579)
                      .+....  |          .+..+-|+.+++.++.++. .++++|.++....+..+++                      
T Consensus       187 ~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~----------------------  244 (488)
T KOG2325|consen  187 AFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV----------------------  244 (488)
T ss_pred             HHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc----------------------
Confidence            765432  1          1234556777777776666 5667777541111000000                      


Q ss_pred             hhhhhhHHhhccchhhhHHHhhhcchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 008060          247 ESVDKEIEEEGSSEKINLVKLLKTRTVRRG-LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN  325 (579)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (579)
                                  .+...-.+..+.++.-+. .+..+...+...+.....-....+..+...+....+..........+.+
T Consensus       245 ------------~~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g  312 (488)
T KOG2325|consen  245 ------------EEEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISG  312 (488)
T ss_pred             ------------hhhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHH
Confidence                        000111111222222222 2222222222222222223334455556667766666665555555555


Q ss_pred             HHHHHHHHH---HH-hhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060          326 AAGSIVSIY---FI-DRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM  401 (579)
Q Consensus       326 ~~~~~~~g~---l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (579)
                      ++...+...   .. .++.+|+.+..++.....+..+.........                                  
T Consensus       313 ~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s----------------------------------  358 (488)
T KOG2325|consen  313 ILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYS----------------------------------  358 (488)
T ss_pred             HHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccc----------------------------------
Confidence            554443322   22 2223455555554433333332222111110                                  


Q ss_pred             ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCc---ccccce
Q 008060          402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM---GTAPWI  478 (579)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  478 (579)
                                    .|++++. ..-.-+|+.--+||.+..+.-.            ...++.+...++.++   .....+
T Consensus       359 --------------~pv~~~~-~~~~~~~~~~y~wc~~~~~v~~------------~~~l~~~i~~~g~~~P~~~~~~~t  411 (488)
T KOG2325|consen  359 --------------GPVQPYN-TTYAGCDFEEYSWCDTTTAVPL------------ILYLISFIVVFGIAFPFISTALDT  411 (488)
T ss_pred             --------------ccccccc-ccccCcCcccchhhccCcccCh------------hhheeehhheeccccccccchHHH
Confidence                          1222222 2234567777788887755522            222222222222222   233457


Q ss_pred             eeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060          479 VNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       479 ~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      .-+|+..++.+++..|+....+.++..++|.+...+....|+++.+.+.++..++...+.
T Consensus       412 lySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~  471 (488)
T KOG2325|consen  412 LYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW  471 (488)
T ss_pred             HHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999877777666665555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=4.2e-17  Score=175.02  Aligned_cols=454  Identities=15%  Similarity=0.172  Sum_probs=285.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF  110 (579)
Q Consensus        31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~  110 (579)
                      ..+.++++..+..++....+...+..+.+.|+++..+.   |++.+.+-++..+...+..+..-|.-|-+.+-+|+++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s---G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS---GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMG  173 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc---eeEeeecccchhhhhHhHHHhccccCccceeeechhHHH
Confidence            45566777788888888888889999999999999998   999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc--------------------c-----------------------------h---hhHHHHHHHHHHhhchh
Q 008060          111 VGAVIMAAA--------------------P-----------------------------N---PGALITGRVFVGLGVGM  138 (579)
Q Consensus       111 i~~ll~~~a--------------------~-----------------------------~---~~~ll~~R~l~Gig~g~  138 (579)
                      ++++++++-                    +                             +   +..++++.++.|+|...
T Consensus       174 lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tp  253 (735)
T KOG3626|consen  174 LGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATP  253 (735)
T ss_pred             HHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCC
Confidence            999998741                    0                             0   23567788999999999


Q ss_pred             hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------------------CcchhHHHHhhHHHH
Q 008060          139 ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------------------GTWRWMLGVAGIPAL  200 (579)
Q Consensus       139 ~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------------------~~Wr~~f~i~~i~~l  200 (579)
                      .++...+|+-|...+++-+..+|+..+...+|.++|.++++++...+                  |-|..-|++.+.+.+
T Consensus       254 i~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~  333 (735)
T KOG3626|consen  254 IFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL  333 (735)
T ss_pred             CccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999876432                  136777888888888


Q ss_pred             HHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHH
Q 008060          201 LQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAG  280 (579)
Q Consensus       201 ~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (579)
                      +..+.++++|+..+.-.++   .+.++ . +..+.+.  .     ....+......-++-+...++++++|.+..     
T Consensus       334 ~~a~p~f~fPk~lp~~~~~---~~~~~-~-~~~k~~~--~-----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~-----  396 (735)
T KOG3626|consen  334 FSAVPLFFFPKELPKSQKR---KRARD-L-HVLKTES--G-----GAKSDKTFGKKIKDFPKSIKRLLSNPIFML-----  396 (735)
T ss_pred             HHHHHHHhCcccCcccccc---chhhh-h-ccccccc--c-----cccCCcchhhhHHHHHHHHHHHhcCchHHH-----
Confidence            8888888888763311111   00000 0 0000000  0     000000000111223556777888887643     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHHH
Q 008060          281 VGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLS-LVTSGLNAAGSIVSIYFIDRTG--RKKLLVISLSGVILSLG  357 (579)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~  357 (579)
                      ..+...+....+..+.+|+|-|++.....++..+..++ .+...+..+|.+++|++++|+.  .|......++...++++
T Consensus       397 ~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~  476 (735)
T KOG3626|consen  397 VVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL  476 (735)
T ss_pred             HHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence            33444555667888899999999987777777776666 4444556788999999999975  34554454544444444


Q ss_pred             HHHHHhccc---CC-----CCCccccccccccCCCCCCCCcc--ccccccccccccccCCCC-------CCCcccCC---
Q 008060          358 VLSAVFHET---TS-----HSPMVSAVETSHFSNLTCPDYSS--AATADRWDCMKCLKASSP-------DCGFCASH---  417 (579)
Q Consensus       358 ~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~---  417 (579)
                      .+.......   ..     .....+..++.|.+ ++.+ =|+  .=..++|+-| |++.+-.       -|......   
T Consensus       477 ~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~-~~s~-Cn~~C~C~~~~~~PV-Cg~~G~tY~SpChAGC~~~~~~~~~  553 (735)
T KOG3626|consen  477 FYSLLFFIGCESSPVAGVTNSYEGSPAFTSHEN-PFSS-CNSDCSCDTSEYEPV-CGENGITYFSPCHAGCTESSGTSDG  553 (735)
T ss_pred             HHHHHHEecCCCCcccceecCCCCCCccccCCC-chhh-hhcCCCCCCcCcCcc-cCCCCCEEeChhhhCCcccccCCCC
Confidence            432221111   00     00000111111111 0000 000  0011233211 1111110       11111111   


Q ss_pred             CCCCCCccccc----cCccccc-ccccc-cccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchh
Q 008060          418 SNKLFPGACLI----SNSTVKD-LCHDE-SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGV  491 (579)
Q Consensus       418 ~~~~~~~~~~~----~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  491 (579)
                      .+.+.-|.|+=    .++.+|. .|+.+ +++-+          ..++.+++..+....+ .+....++-..+|++.|..
T Consensus       554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~----------~Fl~~~~~~sf~~~~~-~~p~~~i~LR~V~~e~ks~  622 (735)
T KOG3626|consen  554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFL----------IFLALFAIGSFIGALG-AVPGMLIVLRCVPPEEKSF  622 (735)
T ss_pred             ceeeccccccccccCCCceeecCCCCCCcchhhH----------HHHHHHHHHHHHHHhc-cCcceEEEEEccCchhchh
Confidence            12233455553    4444444 55555 44322          2233333333333333 2344578888999999999


Q ss_pred             hhHHHHHHHH-HHHHHHHHHHHHHHHhc
Q 008060          492 CGGIAATANW-ISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       492 ~~gi~~~~~~-~g~~i~~~~~g~~~~~~  518 (579)
                      ++|+..++.+ +|.+-+|+++|+++|..
T Consensus       623 AlG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  623 ALGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             hhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            9999977655 67778899999999863

>TIGR01272 gluP glucose/galactose transporter

Probab=99.77  E-value=5.4e-17  Score=163.96  Aligned_cols=277  Identities=12%  Similarity=0.067  Sum_probs=190.9

Q ss_pred             hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc------------
Q 008060          118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP------------  185 (579)
Q Consensus       118 ~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------------  185 (579)
                      ...+|+.+++.-|+.|.|.+...+....++++..+++++++.+++.+..+++|..++|++++.+....            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999877321            


Q ss_pred             ---CcchhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060          186 ---GTWRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (579)
Q Consensus       186 ---~~Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                         .+||++|++.+.+.++..+.+.+.  ||..+      +.++                            +..+++  
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~----------------------------~~~~~~--  129 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA----------------------------RVSSGD--  129 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc----------------------------cccccc--
Confidence               249999997776655555554444  43210      0000                            000000  


Q ss_pred             hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008060          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR  338 (579)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  338 (579)
                      ..+.++.+++|.++..     .+..++..........|.+.|+++.  .+.+...++........+.++|+++++++.||
T Consensus       130 ~~~~~~~~~~~~~~l~-----~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r  204 (310)
T TIGR01272       130 TTQKTSAFQFTHLVLG-----ALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM  204 (310)
T ss_pred             ccchhhHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111234555554432     2223333335667788899999754  34567778888888999999999999999999


Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCC
Q 008060          339 TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHS  418 (579)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (579)
                      +++|+.+..+..+..++.+++... +                                                      
T Consensus       205 ~g~~~~l~~~~~l~~~~~~l~~~~-~------------------------------------------------------  229 (310)
T TIGR01272       205 ISQGRYLAFNAFLAVLLSIGAALT-H------------------------------------------------------  229 (310)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHc-C------------------------------------------------------
Confidence            999998877776666655433321 1                                                      


Q ss_pred             CCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHH
Q 008060          419 NKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAAT  498 (579)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~  498 (579)
                                                         ++...+.+.+++ ++...+.|...+...+..|++ .+++.++. .
T Consensus       230 -----------------------------------~~~~~~~~~l~g-~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~  271 (310)
T TIGR01272       230 -----------------------------------GYVAMWFVLALG-LFNSIMFPTIFSLALNALGRH-TSQGSGIL-C  271 (310)
T ss_pred             -----------------------------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-H
Confidence                                               111122222222 333334566566777777654 46677775 5


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 008060          499 ANWISNLIVAQSFLSLTQAIGTSWTFLIFG  528 (579)
Q Consensus       499 ~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~  528 (579)
                      .+.+|+++.|.+.|.+.|..|.+.+|++..
T Consensus       272 ~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       272 LAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            677999999999999999999888876433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.1e-15  Score=157.87  Aligned_cols=339  Identities=18%  Similarity=0.148  Sum_probs=237.7

Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHH-HHHHHHHHHHHHHHHHhcch------
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTS-ILVADFLFFVGAVIMAAAPN------  121 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~v-l~~~~~l~~i~~ll~~~a~~------  121 (579)
                      ++-.+.+.+|++....   |.+..+.-+--++.-|+.|.++|    |+||+|. ++.+.+..++...++-.+++      
T Consensus        35 Ll~fYTdv~Gis~~~a---G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k  111 (467)
T COG2211          35 LLFFYTDVFGLSAALA---GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGK  111 (467)
T ss_pred             HHHHHhcccCCcHHHH---HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcc
Confidence            3345678889988887   98999999999999999999999    4787665 56687888888888877763      


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC------cchhHHHH
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG------TWRWMLGV  194 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~------~Wr~~f~i  194 (579)
                      ....++...+.+++......+-.++..|..+ ++||.+..++-..+.++|..+...+.+.+....+      +|+..-.+
T Consensus       112 ~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~  191 (467)
T COG2211         112 LIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALV  191 (467)
T ss_pred             hHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence            4556677788899999888888889999876 6889999999999999997776666655543221      47777777


Q ss_pred             hhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchh
Q 008060          195 AGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTV  273 (579)
Q Consensus       195 ~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (579)
                      .++++++..+. ++-.+|.+...                                 ...+...+.+-+.++...+++|.+
T Consensus       192 ~~vi~~i~~l~~~~~v~ER~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~Nrp~  238 (467)
T COG2211         192 LGVIGVILLLFCFFNVKERVVET---------------------------------QPTKTGVKLKLKDSFLLIFKNRPL  238 (467)
T ss_pred             HHHHHHHHHHHHHHHhhcccCcc---------------------------------ccCcccccccHHHHHHHHHccchH
Confidence            77766665555 44456653200                                 000000112223345567888888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHH
Q 008060          274 RRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVI  353 (579)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  353 (579)
                      +...+..++.     +.+.+........|.+...+.+.............+.+++.++..++++|+|+|+++.++.++.+
T Consensus       239 ~~~l~~~l~~-----~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         239 LLLLLMNLLL-----FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             HHHHHHHHHH-----HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            7655533332     23344444455556555555555556566666677677779999999999999999999999988


Q ss_pred             HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccc
Q 008060          354 LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTV  433 (579)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (579)
                      ++.+++.+....                                                                    
T Consensus       314 i~~~~~~f~~~~--------------------------------------------------------------------  325 (467)
T COG2211         314 VGYLLLYFTPAG--------------------------------------------------------------------  325 (467)
T ss_pred             HHHHHHHhhcCc--------------------------------------------------------------------
Confidence            888888776410                                                                    


Q ss_pred             ccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccc-------ccccchhhhHHHHHHHHHHHHH
Q 008060          434 KDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIY-------PLRFRGVCGGIAATANWISNLI  506 (579)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------p~~~~g~~~gi~~~~~~~g~~i  506 (579)
                                         ..++.++..++...+.+ ...+++|++++|..       ..|..|...|++.++..+|.++
T Consensus       326 -------------------~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al  385 (467)
T COG2211         326 -------------------SVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL  385 (467)
T ss_pred             -------------------chHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence                               12222233233333332 33678899998875       3466699999999999999999


Q ss_pred             HHHHHHHHHHhccc
Q 008060          507 VAQSFLSLTQAIGT  520 (579)
Q Consensus       507 ~~~~~g~~~~~~g~  520 (579)
                      +..+.|++.+..||
T Consensus       386 a~~~~g~~L~~~Gy  399 (467)
T COG2211         386 AGFIPGWILGAIGY  399 (467)
T ss_pred             HHHHHHHHHHHcCC
Confidence            99999999988775

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.72  E-value=1.1e-14  Score=145.94  Aligned_cols=354  Identities=16%  Similarity=0.092  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHHhcch---hhHHHHHHHHHHhhchhhhhhHhH
Q 008060           70 LQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMAAAPN---PGALITGRVFVGLGVGMASMTSPL  145 (579)
Q Consensus        70 ~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~~a~~---~~~ll~~R~l~Gig~g~~~~~~~~  145 (579)
                      +.+...++..+..++..|+.|.++|+.|+||..+ +...+..++..+..++++   ++..++...+..++.....+.-.+
T Consensus        59 ~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds  138 (438)
T COG2270          59 YWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDS  138 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhh
Confidence            4488999999999999999999999999776654 455555556666666554   445556668888888888899999


Q ss_pred             hhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh--cc---------------CcCcchhHHHHhhHHHHHHHHH-HH
Q 008060          146 YISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF--TR---------------APGTWRWMLGVAGIPALLQFIL-ML  207 (579)
Q Consensus       146 ~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l--~~---------------~~~~Wr~~f~i~~i~~l~~~i~-~~  207 (579)
                      ++.+..++++-++..+.-.....+|..+.-++....  ..               ....-|..+.+.++..++..+. ++
T Consensus       139 ~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~  218 (438)
T COG2270         139 MLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMIL  218 (438)
T ss_pred             HhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHh
Confidence            999999998888888876666667766555443111  11               0113677888888766665555 55


Q ss_pred             hccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHH
Q 008060          208 LLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQ  287 (579)
Q Consensus       208 ~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (579)
                      .+++.++-.   ....+                   ...        ..-++-+.+++++.+++.+...++.     .++
T Consensus       219 ~v~~~~~~~---~~~~~-------------------~l~--------~g~k~L~~t~k~i~~~~~i~~FLiA-----~~~  263 (438)
T COG2270         219 NVHDAEKIS---SPPPT-------------------ALR--------NGFKELKSTFKEIRGRKNLVLFLIA-----RFF  263 (438)
T ss_pred             ccccccccc---ccchH-------------------HHH--------HHHHHHHHHHHHHhcccchHHHHHH-----HHH
Confidence            555554200   00000                   000        0001112345555555555433333     333


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060          288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT  367 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (579)
                      ..-+.++.......|-....+.+..+..++.....+.+++|+++.|++.||+|.|+++..+.++..+..+...+....  
T Consensus       264 ~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~--  341 (438)
T COG2270         264 YIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE--  341 (438)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc--
Confidence            344667777777788775555567777888888899999999999999999999999888887776666555543220  


Q ss_pred             CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060          368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR  447 (579)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (579)
                                                                                                      
T Consensus       342 --------------------------------------------------------------------------------  341 (438)
T COG2270         342 --------------------------------------------------------------------------------  341 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHH
Q 008060          448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLI  526 (579)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~  526 (579)
                              .....+.++.+.+..+.....-++..+++|+++.+..+|+.+..+..+.+++|..++.+.+.+| .+..+..
T Consensus       342 --------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~  413 (438)
T COG2270         342 --------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLS  413 (438)
T ss_pred             --------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence                    1134444444455445555667899999999999999999999999999999999999999887 6667777


Q ss_pred             HHHHHHHHHHHhhhhccCCCCCC
Q 008060          527 FGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      ..++..++++.. ...|+.++++
T Consensus       414 i~vll~iGl~~L-~~v~~~~~~~  435 (438)
T COG2270         414 IIVLLLIGLLLL-LRVKVPGRRE  435 (438)
T ss_pred             HHHHHHhhHhhE-EeecCCCCcc
Confidence            777777777664 3455544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.68  E-value=2.4e-14  Score=146.61  Aligned_cols=173  Identities=20%  Similarity=0.335  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHhhhhhhhh-hhhhhhhhhhcc----cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVI-SGALLYIRDDFK----SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVAD  106 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~-~~~lp~i~~~~~----~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~  106 (579)
                      +..++..-+...++..-+ +.+.-++..+++    .+++++   .-+.+.|..-.-+..+++|+++||+ |+|+.+++|.
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A---~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGa   99 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA---TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGA   99 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh---HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            334444455554444433 333445555665    887777   5566666655567789999999997 9999999999


Q ss_pred             HHHHHHHHHHHhcc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc--cchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          107 FLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISEASPAK--IRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       107 ~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~--~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      +++.+|.++.+.+.  +...+.++-.+.++|.|..=+....+++|.+|++  +|...++++.++.++|+.++|++.+++.
T Consensus       100 il~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~  179 (498)
T COG3104         100 ILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA  179 (498)
T ss_pred             HHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH
Confidence            99999999999984  7889999999999999999999999999999854  4788899999999999999999999999


Q ss_pred             cCcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060          183 RAPGTWRWMLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       183 ~~~~~Wr~~f~i~~i~~l~~~i~~~~l  209 (579)
                      +..+ |+..|...++-..+.++.++..
T Consensus       180 ~~~g-~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         180 INYG-WHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HhhC-HHHHHHHHHHHHHHHHHHHHHc
Confidence            9988 9999998887655555554444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.67  E-value=5e-18  Score=182.42  Aligned_cols=310  Identities=18%  Similarity=0.184  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      ++.+++..+...+........++.+.+.|+++..+.   |++.+.+-++..+..++..++.+|..|-|.+-+|.++++++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~---G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g   81 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS---GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLG   81 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHH
Confidence            344555666667777888888999999999999999   99999999999999999999999988888889999999999


Q ss_pred             HHHHHh--------------------------c------------------------chhhHHHHHHHHHHhhchhhhhh
Q 008060          113 AVIMAA--------------------------A------------------------PNPGALITGRVFVGLGVGMASMT  142 (579)
Q Consensus       113 ~ll~~~--------------------------a------------------------~~~~~ll~~R~l~Gig~g~~~~~  142 (579)
                      ++++++                          .                        .-++.++++.++.|+|....++.
T Consensus        82 ~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL  161 (539)
T PF03137_consen   82 SLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL  161 (539)
T ss_dssp             ----------------------------------------------------------------------SSS-------
T ss_pred             HHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence            998763                          0                        01466888999999999999999


Q ss_pred             HhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc---------------------CcchhHHHHhhHHHHH
Q 008060          143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP---------------------GTWRWMLGVAGIPALL  201 (579)
Q Consensus       143 ~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~---------------------~~Wr~~f~i~~i~~l~  201 (579)
                      ..+|+-|..++++-+..+|+..+...+|.++|.++++.+...+                     |.|-.-|++.+.+.++
T Consensus       162 G~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  162 GITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998776431                     1366667777777777


Q ss_pred             HHHHHHhccCC-hhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhh-hhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060          202 QFILMLLLPES-PRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVD-KEIEEEGSSEKINLVKLLKTRTVRRGLIA  279 (579)
Q Consensus       202 ~~i~~~~lpes-p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (579)
                      ..+.++++|+. |+...   ..++.+...++..     +...+...+... +......++-....++++++|.+....+ 
T Consensus       242 ~aipl~~FPk~lp~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~l-  312 (539)
T PF03137_consen  242 SAIPLFFFPKKLPGTSE---RQEEKESSERKEE-----DSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLIL-  312 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHcCCccCCCccc---ccchhhhhhcchh-----hhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHH-
Confidence            77777777765 32200   0000000000000     000000000000 0001112333556778888887744333 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHhhcC--CchhhHHHHHHHHHHH
Q 008060          280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSL-VTSGLNAAGSIVSIYFIDRTG--RKKLLVISLSGVILSL  356 (579)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~  356 (579)
                          ...........+.+|.|-|++.....++..+.++.. +...++++|.+++|++.+|++  .|+.+....+...++.
T Consensus       313 ----a~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  313 ----AGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence                333444567788889999998776666666665554 334467899999999999975  4455444444444444


Q ss_pred             HH
Q 008060          357 GV  358 (579)
Q Consensus       357 ~~  358 (579)
                      ++
T Consensus       389 ~~  390 (539)
T PF03137_consen  389 IL  390 (539)
T ss_dssp             --
T ss_pred             HH
Confidence            33

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.67  E-value=3e-15  Score=161.59  Aligned_cols=181  Identities=14%  Similarity=0.163  Sum_probs=140.0

Q ss_pred             hhhhhhhh-hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH---HHhcchhhHH
Q 008060           50 ISGALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI---MAAAPNPGAL  125 (579)
Q Consensus        50 ~~~~lp~i-~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll---~~~a~~~~~l  125 (579)
                      ....+|.+ .+++|.+..+.   ++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...+
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHG---VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI  345 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            34455654 46678776665   77778888999999999999999999999988877654433322   2234567788


Q ss_pred             HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      +++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+..+++..+++++.++.
T Consensus       346 ~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~  425 (490)
T PRK10642        346 FAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT  425 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence            88999999887777777778889999999999999975444556667888888888776555888877777777777777


Q ss_pred             HHhccCChhHHHhc-----CCHHHHHHHHHhhc
Q 008060          206 MLLLPESPRWLYRK-----GREEEAQAILRKVY  233 (579)
Q Consensus       206 ~~~lpesp~~l~~~-----~~~~~~~~~~~~~~  233 (579)
                      .+++||+|+|+.++     ++.+|+.+.+++++
T Consensus       426 ~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        426 GVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            77789999988754     88899999888876

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.60  E-value=2.1e-12  Score=130.05  Aligned_cols=333  Identities=15%  Similarity=0.065  Sum_probs=220.4

Q ss_pred             hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHH-HHHHHHHHHHHHHhc-----c----
Q 008060           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILV-ADFLFFVGAVIMAAA-----P----  120 (579)
Q Consensus        56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~-~~~l~~i~~ll~~~a-----~----  120 (579)
                      -+..|+++...-.   +.+.++..+.. ...+.+|+.||+.+     ||..+++ |..+...+..+..++     .    
T Consensus         5 VMIvEL~vpA~lv---~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~   80 (403)
T PF03209_consen    5 VMIVELGVPAWLV---ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ   80 (403)
T ss_pred             hHHHHhccHHHHH---HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            3567888755444   77888777755 45899999999999     8877664 666666655555432     2    


Q ss_pred             ---h--h--hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060          121 ---N--P--GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (579)
Q Consensus       121 ---~--~--~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~  193 (579)
                         +  .  ....+...+.|+|.+.......++++|..|+++|+++.++...+.-+|.+++..+.+.+.+.+..-|..-.
T Consensus        81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v  160 (403)
T PF03209_consen   81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV  160 (403)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence               2  2  23445668889999999999999999999999999999999999999999999999999887664444333


Q ss_pred             HhhHH--HHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcc
Q 008060          194 VAGIP--ALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTR  271 (579)
Q Consensus       194 i~~i~--~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (579)
                      +.+..  .+...++..+=.|.+. ....                               ...++++......+++...+|
T Consensus       161 ~~~~a~i~~~l~~ia~wg~E~r~-~~~~-------------------------------~~~~~~~~~f~~a~~~~~~~~  208 (403)
T PF03209_consen  161 IQGVALIALLLNLIALWGQEPRR-SRRA-------------------------------AAAERPRPPFREAWRQVWASP  208 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCC-cccc-------------------------------cCCCCCCccHHHHHHHHHhCC
Confidence            33322  2222222222233211 0000                               001122223345677778888


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCchhhHHHHH
Q 008060          272 TVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID-RTGRKKLLVISLS  350 (579)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~  350 (579)
                      +.++..+..+...     .+++.--..+..|-.+..+.+..+..-+......+.++|....|++.. |.++++...+++.
T Consensus       209 ~a~~f~~fl~l~t-----~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~  283 (403)
T PF03209_consen  209 QARRFFVFLFLGT-----LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL  283 (403)
T ss_pred             ChhHHHHHHHHHH-----HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            8776444332221     123333333444545566667788888888899999999999998877 5777788788988


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccC
Q 008060          351 GVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISN  430 (579)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (579)
                      ..++++.++.......                                                                
T Consensus       284 ~~~~~f~lii~a~~~~----------------------------------------------------------------  299 (403)
T PF03209_consen  284 LGALAFALIILAGPLG----------------------------------------------------------------  299 (403)
T ss_pred             HHHHHHHHHHHHHhcc----------------------------------------------------------------
Confidence            8888888777654321                                                                


Q ss_pred             cccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc-ccceeeccccccccchhhhHHHHHHHHHHHHHHHH
Q 008060          431 STVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT-APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQ  509 (579)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~  509 (579)
                                            ..|+......++  +++.|... ...+...++.+++..|..+|....+..++..++..
T Consensus       300 ----------------------~~~~~~~~~~l~--G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~  355 (403)
T PF03209_consen  300 ----------------------SPWLFRPGVFLL--GLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTF  355 (403)
T ss_pred             ----------------------cchHHHHHHHHH--HHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence                                  133333444333  33334332 22355567777788899999999999999999998


Q ss_pred             HHHHHHHh
Q 008060          510 SFLSLTQA  517 (579)
Q Consensus       510 ~~g~~~~~  517 (579)
                      ..|.+.|.
T Consensus       356 ~GG~~~D~  363 (403)
T PF03209_consen  356 LGGALRDL  363 (403)
T ss_pred             HHHHHHHH
Confidence            88888764

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.56  E-value=4.1e-13  Score=141.03  Aligned_cols=368  Identities=14%  Similarity=0.123  Sum_probs=229.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchh--hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKT--LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~--~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ..+.+.....+-.+..++......+..+.....++.+....  ...+.......+...+.++..|.++||+|||..+.+.
T Consensus        19 ~~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~   98 (463)
T KOG2816|consen   19 SMRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLP   98 (463)
T ss_pred             hhhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHH
Confidence            34455566666667777777666667676666655433222  1112232233678888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHhh--chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060          106 DFLFFVGAVIMAAAPNPGALITGRVFVGLG--VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (579)
Q Consensus       106 ~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig--~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~  183 (579)
                      ++...+..+...+.. +|.++    +.|+.  .+.......++++|....++|....++....+..+..++|.+++.+..
T Consensus        99 ~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen   99 LFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            888888777776655 33333    44443  334567778899999999999999999999999999999999999988


Q ss_pred             CcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhh
Q 008060          184 APGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKI  262 (579)
Q Consensus       184 ~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (579)
                      ..+ .-.+|.+..+..++..+. ++++||+-..-.+.   + ...  +.               ............+...
T Consensus       174 ~~~-~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~---~-~~~--~~---------------~~~~~~~~~~~~~~~~  231 (463)
T KOG2816|consen  174 FLG-IALVFLIAAASGILSLLYMLLFLPESLQEKERS---D-ATL--RE---------------LTPGSLDSSHVADAFQ  231 (463)
T ss_pred             hcC-chHHHHHHHHHHHHHHHHHhhccccccCccccc---c-ccc--cc---------------cCCCcccchhhhhhhh
Confidence            776 888888888888877776 67788883210000   0 000  00               0000000000000011


Q ss_pred             hHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHhhcCC
Q 008060          263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSI-YFIDRTGR  341 (579)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~  341 (579)
                      ...+ .++++..   +.......+..........-..+.|++.....+....+.+.........++.++.. .+...++.
T Consensus       232 ~~~~-~~~~r~~---l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~  307 (463)
T KOG2816|consen  232 SLTK-VGPDRLL---LLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGE  307 (463)
T ss_pred             hhcc-cCCCccc---hHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111 1122211   11111111000000000010113344444444555556555555555677776665 77777898


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCC
Q 008060          342 KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKL  421 (579)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (579)
                      |++...|.....+..+.+.+..+                                                         
T Consensus       308 ~~~i~lGl~~~~~~~~~~af~~~---------------------------------------------------------  330 (463)
T KOG2816|consen  308 KRLISLGLLSEFLQLLLFAFATE---------------------------------------------------------  330 (463)
T ss_pred             hhHhhHHHHHHHHHHHHHHHhcc---------------------------------------------------------
Confidence            88888888888888888887644                                                         


Q ss_pred             CCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHH
Q 008060          422 FPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANW  501 (579)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~  501 (579)
                                                      .|.+.....+.  .+.....+...+..+...+++.+|.+.++......
T Consensus       331 --------------------------------~w~~~~~~v~~--~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~  376 (463)
T KOG2816|consen  331 --------------------------------TWMMFAAGVVV--ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEG  376 (463)
T ss_pred             --------------------------------chhhhHHHHHH--HhhcchhHHHHhHHHhhcccccccchhhHHHHHHH
Confidence                                            22222222222  22333456667888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 008060          502 ISNLIVAQSFLSLTQA  517 (579)
Q Consensus       502 ~g~~i~~~~~g~~~~~  517 (579)
                      +.+.++|.+++.++..
T Consensus       377 l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  377 LSGVVSPALYGNIFAL  392 (463)
T ss_pred             HhhhhhHHHHHHHHHH
Confidence            9999999999988754

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.54  E-value=4e-14  Score=124.61  Aligned_cols=136  Identities=29%  Similarity=0.489  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc
Q 008060           75 VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAK  154 (579)
Q Consensus        75 ~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~  154 (579)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567888899999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHH-HhccC
Q 008060          155 IRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILM-LLLPE  211 (579)
Q Consensus       155 ~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~-~~lpe  211 (579)
                      +|++++++......+|..+++.+++.+.+..+ |++.|++.+++.++..+.. ++.||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999988776 9999999887777666654 44454

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.50  E-value=4.7e-13  Score=141.37  Aligned_cols=383  Identities=16%  Similarity=0.180  Sum_probs=226.5

Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc-----chHHHHHHHHHHHHHHHHHHhc----ch
Q 008060           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG-----RRTSILVADFLFFVGAVIMAAA----PN  121 (579)
Q Consensus        51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G-----rr~vl~~~~~l~~i~~ll~~~a----~~  121 (579)
                      ....|.+++++|+++.+.   ..+.+...+...+ -++.|.++|.+.     ||+-++++.++.+++.+..+..    .+
T Consensus        10 ~~~~~~l~~~l~ls~~~~---~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s   85 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQL---QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESS   85 (433)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccch
Confidence            456678899999998888   7777777777655 789999999873     4555566777766655555543    34


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCC--cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASP--AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p--~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~  199 (579)
                      .....+.-++..+|....-.++-+++.|...  ++.|+...+.......+|.+++..++|.+.+..+ +|..|.+.+++.
T Consensus        86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~  164 (433)
T PF03092_consen   86 AAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALP  164 (433)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHH
Confidence            6666677788889999999999999999874  3347788888888999999999999999998877 999999888776


Q ss_pred             HHHHHHH-HhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHH
Q 008060          200 LLQFILM-LLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLI  278 (579)
Q Consensus       200 l~~~i~~-~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (579)
                      .+..+.. ++.+|.++     ...++...                 ..+..........++.....++.++.+..+...+
T Consensus       165 ~l~~~~~~~~~~e~~~-----~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  222 (433)
T PF03092_consen  165 LLMLIVALFLLEERKV-----RPADEVFS-----------------FGKEEVPCLFGSFREQLSELWRALQQRAIWQPIL  222 (433)
T ss_pred             HHHHHHHHHhhhhccc-----cccchhhc-----------------ccccccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            6666554 44444211     00000000                 0000000000001122456677788887776655


Q ss_pred             H-HHHHHHHHHHHHHHH-HHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Q 008060          279 A-GVGLQVFQQFVGINT-VMYYSPTIVQLSG--FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVIL  354 (579)
Q Consensus       279 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  354 (579)
                      . .++.... ... ... ..++..   ...+  +.+....+.+..+..++.++|..+..+...+..-|+++....++.++
T Consensus       223 ~~~~~~~~~-~~~-~~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  223 FFIFFFNLP-PSI-SSASSFYFQT---DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHhc-cCC-CCccEEEEEe---ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            2 1111110 000 000 011110   1112  12445555555666666777777776666666656665444433332


Q ss_pred             HHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccc
Q 008060          355 SLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVK  434 (579)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (579)
                      ..+.-.....                                ||.                                   
T Consensus       298 ~~l~~~~lv~--------------------------------~~n-----------------------------------  310 (433)
T PF03092_consen  298 ASLFDLLLVT--------------------------------RWN-----------------------------------  310 (433)
T ss_pred             HhcccEEEEE--------------------------------EEe-----------------------------------
Confidence            2211111000                                010                                   


Q ss_pred             cccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 008060          435 DLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSL  514 (579)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~  514 (579)
                                ...|.|++.-+..-  -.+.-....+.+.|.. ...+|+.|+...|+.+++..+..++|..++..+...+
T Consensus       311 ----------~~~Gi~d~~f~lgd--~~l~~~~~~i~~mP~l-vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l  377 (433)
T PF03092_consen  311 ----------LDLGIPDQWFALGD--TILEEVIGMIAFMPSL-VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL  377 (433)
T ss_pred             ----------eeeCcCCeEEEEEh--HHHHHHHHHHHHHHHH-HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      11244555222222  2222223333333333 6788999999999999999999999999999998888


Q ss_pred             HHhccc--------chhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          515 TQAIGT--------SWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       515 ~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .+..|.        .+..++..++.++.+.+. .++|+.+
T Consensus       378 ~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll-~lLp~~~  416 (433)
T PF03092_consen  378 MELFGVTRDDFSNLWLLILICSVIQLLPLPLL-FLLPPQK  416 (433)
T ss_pred             HHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HHcCCCc
Confidence            877652        334455555555555543 3456544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00889 2A0110 nucleoside transporter

Probab=99.49  E-value=3.9e-13  Score=141.96  Aligned_cols=161  Identities=13%  Similarity=0.114  Sum_probs=130.4

Q ss_pred             hhhhhhhhhcccccch-----hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc----hh
Q 008060           52 GALLYIRDDFKSVDRK-----TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP----NP  122 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~-----~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~----~~  122 (579)
                      ...+...++.+.+...     ....+.+.++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            4445555566544311     12338899999999999999999999999999999999999988877776632    24


Q ss_pred             hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcC-----cchhHHHHhh
Q 008060          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-----TWRWMLGVAG  196 (579)
Q Consensus       123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~-----~Wr~~f~i~~  196 (579)
                      +.+++.+++.|++.+...+....++.|++|+++|++++++.+ ...++|.++||+++|++.+..+     +|+..|.+.+
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~  388 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFA  388 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHH
Confidence            667788999999999888998999999999999999999997 6789999999999999988643     3999999888


Q ss_pred             HHHHHHHHH-HHhccCC
Q 008060          197 IPALLQFIL-MLLLPES  212 (579)
Q Consensus       197 i~~l~~~i~-~~~lpes  212 (579)
                      ++.++..++ +++++|+
T Consensus       389 ~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       389 GYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHhCCc
Confidence            877766665 5667776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.48  E-value=1.1e-12  Score=145.46  Aligned_cols=140  Identities=16%  Similarity=0.105  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      .+...+..++..++.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.++...++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677889999999999999999999999999999999999999988888889999999988889999999999999


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP  213 (579)
Q Consensus       152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp  213 (579)
                      |.++|++++|+..+...+|.+++|++++.+...  +...+|++.+++.++..++.+++||+.
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999988764  356788888877777777777789873

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.46  E-value=9.6e-13  Score=139.31  Aligned_cols=140  Identities=14%  Similarity=0.126  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      |++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++.|.+
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  344 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999999999999999999899999999999999999999998888888889999999


Q ss_pred             Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      |++.|+...+. ++....+|.++++.+.+++.+..| ||..|.+.+++.++..++ ++.+++.
T Consensus       345 ~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        345 DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999887665 677788999999999999999887 999999988877666555 4444444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.44  E-value=3.2e-12  Score=134.58  Aligned_cols=157  Identities=17%  Similarity=0.085  Sum_probs=132.5

Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008060           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (579)
Q Consensus        51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~  130 (579)
                      ....|.+.++.|.+..+.   +.+.+.+.++..++.++.|+++||+|||+.+..+.+..+++.++..+.++.+.+.+..+
T Consensus       240 ~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQA---GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGF  316 (406)
T ss_pred             HHHHHHHHHhCCCChhhh---hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344577777788887777   89999999999999999999999999999998887777777777777888888888888


Q ss_pred             HHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhcc
Q 008060          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP  210 (579)
Q Consensus       131 l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lp  210 (579)
                      +.|++.+...+...+++.|.+|+++|++++++.+....+|..++|.+++.+.+..++|...++..+...++..+..+.+.
T Consensus       317 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        317 AAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            89998888888889999999999999999999999999999999999999988766577777777766666555544443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=4.1e-12  Score=133.26  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=128.0

Q ss_pred             hhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 008060           52 GALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRV  130 (579)
Q Consensus        52 ~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~  130 (579)
                      ...|. +.++++.+..+.   +++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.++
T Consensus       237 ~~~p~~l~~~~~~~~~~~---g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  313 (393)
T PRK15011        237 INMPLFIINELHLPEKLA---GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQL  313 (393)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34454 557788887776   88888877888889999999999999999888777666655555556778888888999


Q ss_pred             HHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhcc
Q 008060          131 FVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLP  210 (579)
Q Consensus       131 l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lp  210 (579)
                      +.+++.+...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+..+ |+..|++.+++.++..+..++.|
T Consensus       314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhc
Confidence            99988887777778888999986 58999999999999999999999999998776 99999988888877777776666


Q ss_pred             C
Q 008060          211 E  211 (579)
Q Consensus       211 e  211 (579)
                      |
T Consensus       392 ~  392 (393)
T PRK15011        392 D  392 (393)
T ss_pred             C
Confidence            5

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.43  E-value=1.5e-12  Score=134.96  Aligned_cols=148  Identities=17%  Similarity=0.058  Sum_probs=126.0

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh--hHHHHHH
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP--GALITGR  129 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~--~~ll~~R  129 (579)
                      ...+.+.++++.++.+.   +++.+.+.++..+++++.|+++||+|||+.+.++.++.+++.++..+.++.  ..+++..
T Consensus       226 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL---VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATV  302 (377)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            34455667788776666   889999999999999999999999999999999999888888887776643  3345667


Q ss_pred             HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHH
Q 008060          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF  203 (579)
Q Consensus       130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~  203 (579)
                      ++.|++.+...+....++.|.+|+++|++++++......+|..++|.+.+.+.+..+ |++.|.+.+++.++..
T Consensus       303 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       303 ALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHhc
Confidence            888888888888888899999999999999999999999999999999999998877 9999998887666543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.40  E-value=7.2e-12  Score=128.29  Aligned_cols=165  Identities=24%  Similarity=0.344  Sum_probs=144.8

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchH-HHHHHHHHHHHHHHHHH
Q 008060           40 GLLFGYDTGVISGALLYIRDDF-KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRT-SILVADFLFFVGAVIMA  117 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~~-~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~-vl~~~~~l~~i~~ll~~  117 (579)
                      .+.............|.+.++. |.+..+.   ++..+...++..++.++.+++.||+|||+ .+..+..+..++.+...
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEA---GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3444445555566666666554 7777777   99999999999999999999999999999 99999999999999999


Q ss_pred             hcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhH
Q 008060          118 AAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (579)
Q Consensus       118 ~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i  197 (579)
                      ..++.+.+.+..++.|++.+...+....++.|..|+++|++.+++......+|..+++.+.+.+.+..+ |++.+++.++
T Consensus       261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~  339 (352)
T cd06174         261 LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAA  339 (352)
T ss_pred             HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998776 9999999998


Q ss_pred             HHHHHHHHHHh
Q 008060          198 PALLQFILMLL  208 (579)
Q Consensus       198 ~~l~~~i~~~~  208 (579)
                      +.++..+..++
T Consensus       340 ~~~i~~i~~~~  350 (352)
T cd06174         340 LALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHhee
Confidence            88877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=1.2e-11  Score=129.94  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=130.1

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l  131 (579)
                      ...+.+..+.+.  .+.   ++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus       237 ~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        237 TFITLYYAARGW--DGA---ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHccc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            334444444454  233   566778888999999999999999999999999988888888888888888888899999


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE  211 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe  211 (579)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.+.+.++..+..+++++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888888899999999999999999999999999999999988777 999999988887777766555544


Q ss_pred             C
Q 008060          212 S  212 (579)
Q Consensus       212 s  212 (579)
                      .
T Consensus       391 ~  391 (399)
T PRK05122        391 R  391 (399)
T ss_pred             c
Confidence            4

>TIGR00895 2A0115 benzoate transport

Probab=99.37  E-value=2.2e-11  Score=127.22  Aligned_cols=170  Identities=20%  Similarity=0.131  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060          286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (579)
                      +...........+.|.+.++.+. +....+++.....++.+++.++.|+++||+|||+.+..+..+..++.+++....+ 
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-  104 (398)
T TIGR00895        27 LMDGYDLAAMGFAAPAISAEWGL-DPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN-  104 (398)
T ss_pred             HHHHHHHHHHHhhHHHHhhccCC-CHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc-
Confidence            33334445556667777777665 5566778888888889999999999999999999999888877777666554311 


Q ss_pred             cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY  445 (579)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (579)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (398)
T TIGR00895       105 --------------------------------------------------------------------------------  104 (398)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060          446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL  525 (579)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~  525 (579)
                              .+. ++...++.+.......+...++..|.+|++.|+.++|+.+....+|..++|.+.+.+.+..||+..|.
T Consensus       105 --------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~  175 (398)
T TIGR00895       105 --------VTQ-LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFY  175 (398)
T ss_pred             --------hHH-HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehh
Confidence                    111 22222222222223345667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCC
Q 008060          526 IFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      +.+++.++..++.+..+||+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       176 VGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hhhhHHHHHHHHHHHhCCCCC
Confidence            987777776666666677764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.37  E-value=1.9e-11  Score=128.73  Aligned_cols=157  Identities=18%  Similarity=0.184  Sum_probs=129.9

Q ss_pred             hhhhhhhhhhhcccccch-hhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060           50 ISGALLYIRDDFKSVDRK-TLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (579)
Q Consensus        50 ~~~~lp~i~~~~~~s~~~-~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~  128 (579)
                      ..+..+.+..+.+.+..+ ....+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            344455544443322222 2223677777888889999999999999999999999988888888888888888899999


Q ss_pred             HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (579)
Q Consensus       129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~  207 (579)
                      +++.|++.+...+....++.+..|+++|++.++++.....+|..+||.+++.+.+..+ |++.|++.+++.++..+..+
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887 99999999988777666543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.35  E-value=1.6e-11  Score=131.19  Aligned_cols=159  Identities=11%  Similarity=0.014  Sum_probs=127.9

Q ss_pred             hhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHHHH--HHHHHHHHHHHHHh
Q 008060           43 FGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILV--ADFLFFVGAVIMAA  118 (579)
Q Consensus        43 ~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl~~--~~~l~~i~~ll~~~  118 (579)
                      ...........+|.+.+++|.+..+.   +++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.++...
T Consensus       253 ~~~~~~~~~~~l~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~  329 (455)
T TIGR00892       253 MFLGFFAPIIFLVPYAKDKGVDEYEA---AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL  329 (455)
T ss_pred             HHHHccchHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334445566667788887777   9999999999999999999999983  34443333  34444555566677


Q ss_pred             cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHH
Q 008060          119 APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP  198 (579)
Q Consensus       119 a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~  198 (579)
                      .++++.+++.+++.|++.+...+...+++.|.+|+++|++++++++....+|..+||.+++.+.+..++|++.|++.+++
T Consensus       330 ~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~  409 (455)
T TIGR00892       330 AGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSI  409 (455)
T ss_pred             hchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHH
Confidence            88999999999999999999999999999999999999999999999999999999999999998776699999998877


Q ss_pred             HHHHHH
Q 008060          199 ALLQFI  204 (579)
Q Consensus       199 ~l~~~i  204 (579)
                      .++..+
T Consensus       410 ~li~~~  415 (455)
T TIGR00892       410 VVSAGL  415 (455)
T ss_pred             HHHHHH
Confidence            665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.35  E-value=2.5e-11  Score=126.76  Aligned_cols=155  Identities=12%  Similarity=0.022  Sum_probs=133.2

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll  126 (579)
                      ...+....|.+.+++|.+....   |.+.+...++..++.++.+++.||+|+|+.+.++.++.++..++.+++++.+.++
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~---g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASAT---GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIF  297 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence            3334445566657789888777   9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      +.+++.|++.+...+....++.+. |+++|+++.++++ ...++|.++++.++|++.+..+ + ..|++.+.+.++..++
T Consensus       298 ~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       298 LLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999998 9999999999986 5788999999999999999886 6 5566677666655444


Q ss_pred             HH
Q 008060          206 ML  207 (579)
Q Consensus       206 ~~  207 (579)
                      ..
T Consensus       375 ~~  376 (382)
T TIGR00902       375 IP  376 (382)
T ss_pred             HH
Confidence            33

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.35  E-value=2.1e-11  Score=126.65  Aligned_cols=151  Identities=17%  Similarity=0.182  Sum_probs=126.8

Q ss_pred             hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Q 008060           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG  135 (579)
Q Consensus        56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig  135 (579)
                      .+.+++|.+..+.   +++.+.......++.++.|++.||+|||+++.++.++..+..++..+.++.+.+++.+++.|++
T Consensus       225 ~~~~~~g~~~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  301 (375)
T TIGR00899       225 LIIHELGLPDKLA---GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIF  301 (375)
T ss_pred             HHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457788877776   8887777777788899999999999999999888777766666666677888888899999999


Q ss_pred             chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccC
Q 008060          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPE  211 (579)
Q Consensus       136 ~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpe  211 (579)
                      .+...+....++.|..|++ |+++++++.....+|..++|.+++.+.+..+ |+..|++.+++.++..+...+++|
T Consensus       302 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       302 IGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            9988888888999998864 6799999999999999999999999988877 999999998887777776655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.34  E-value=4.2e-10  Score=111.91  Aligned_cols=266  Identities=14%  Similarity=0.069  Sum_probs=165.9

Q ss_pred             hhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHH
Q 008060           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT  127 (579)
Q Consensus        48 ~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~  127 (579)
                      ...+|.+..+-+++|.+..+.   +.+....+...++..++.|.++||+|||+..+.-+++.+++++ +-..++++.+++
T Consensus        51 WLQGpY~Y~LY~~yg~~~~qI---a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~  126 (354)
T PF05631_consen   51 WLQGPYLYALYESYGFSEHQI---AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLL  126 (354)
T ss_pred             HhhcchhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHH
Confidence            344566666667899998888   9999999999999999999999999999999999999998886 445689999999


Q ss_pred             HHHHHHhhchhhhhhHhHh-hhhcCC----cccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHH
Q 008060          128 GRVFVGLGVGMASMTSPLY-ISEASP----AKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPAL  200 (579)
Q Consensus       128 ~R~l~Gig~g~~~~~~~~~-l~e~~p----~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l  200 (579)
                      +|++.|++....+..--++ +.|+-.    ++..+..++... ...++-.+++.+++-++.+..+ +-..+|.....+.+
T Consensus       127 GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~  206 (354)
T PF05631_consen  127 GRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA  206 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            9999999999988887765 455532    222233333222 2233445556666666666544 23678887777666


Q ss_pred             HHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHH
Q 008060          201 LQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIA  279 (579)
Q Consensus       201 ~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (579)
                      +..++ ....+|.+..-.   +.                               .+..+.-....+.+.++|+++.    
T Consensus       207 ~~~~~I~~~W~ENyg~~~---~~-------------------------------~~~~~~~~~a~~~i~~d~ril~----  248 (354)
T PF05631_consen  207 VAAVLILKTWPENYGDTS---SS-------------------------------SSLSGSFREAWRAILSDPRILL----  248 (354)
T ss_pred             HHHHHHHhcccccCCCcc---cc-------------------------------cchHHHHHHHHHHHHcCchhHH----
Confidence            66655 344566532000   00                               0000011223445556666532    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHH
Q 008060          280 GVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGV  358 (579)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~  358 (579)
                      ....+..+....+..+..|.|..-   ......--+++.....+..++|+.+..++..+- .....+...+.+..+++.+
T Consensus       249 LG~~qslFE~smy~FVflWtPaL~---~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~  325 (354)
T PF05631_consen  249 LGLIQSLFEGSMYLFVFLWTPALD---PDDEELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAI  325 (354)
T ss_pred             HHHHHHHHHHHHHHheeeeeceec---CCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            233444444555555666677664   111122246777777777899998887655543 3333333434444444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.34  E-value=5.6e-11  Score=125.44  Aligned_cols=179  Identities=13%  Similarity=0.038  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHH
Q 008060          278 IAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLG  357 (579)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  357 (579)
                      +....+.++.++.-.....+..|.+.++.+. +..+.++......++..++.+..|++.||+|||+++..+.++..++.+
T Consensus        10 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~   88 (412)
T TIGR02332        10 IIFLFILFIFSFLDRINIGFAGLTMGKDLGL-SATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST   88 (412)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHhhHhhcCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            3333444444455455555566655455544 677788888889999999999999999999999999988888888777


Q ss_pred             HHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccc
Q 008060          358 VLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLC  437 (579)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (579)
                      +.....+                                                                         
T Consensus        89 ~~~~~~~-------------------------------------------------------------------------   95 (412)
T TIGR02332        89 ATMFATG-------------------------------------------------------------------------   95 (412)
T ss_pred             HHHHhcC-------------------------------------------------------------------------
Confidence            7665421                                                                         


Q ss_pred             ccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 008060          438 HDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-  516 (579)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-  516 (579)
                                      .+. ++..-++.+....+..+....++.|.+|++.|+.++|+.+....+|..+++.+.+.+.+ 
T Consensus        96 ----------------~~~-l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        96 ----------------PES-LYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             ----------------HHH-HHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence                            111 22222233333333345555778999999999999999999999999999999998874 


Q ss_pred             -----hcccchhhHHHHHHHHHHHHHhhhhccCCCC
Q 008060          517 -----AIGTSWTFLIFGVISVAALLFVLIFVPETKG  547 (579)
Q Consensus       517 -----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (579)
                           ..||++.|.+.++..++..++.++++||+++
T Consensus       159 ~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       159 DGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             CCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence                 3689999999988888777766777788764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10054 putative transporter; Provisional

Probab=99.34  E-value=3.9e-11  Score=125.86  Aligned_cols=171  Identities=12%  Similarity=0.030  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      .++...+.+....++|.++++..+.+..+.++......++.+++.++.|+++||+|||+++..+.++..++.+++.+..+
T Consensus        16 ~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~   95 (395)
T PRK10054         16 SLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN   95 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH
Confidence            34445566777778888887665557788888888888889999999999999999999998888877777766554321


Q ss_pred             ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060          365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW  444 (579)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (579)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (395)
T PRK10054         96 --------------------------------------------------------------------------------   95 (395)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060          445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF  524 (579)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~  524 (579)
                               .+..++...+...... ...+....+..|..|++.|+++.|+.+...++|.+++|.+.+.+.+ .||+..|
T Consensus        96 ---------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f  164 (395)
T PRK10054         96 ---------VTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPF  164 (395)
T ss_pred             ---------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHH
Confidence                     1112222222222222 2244556778899999999999999999999999999999998875 6899999


Q ss_pred             HHHHHHHHHHHHHhhhhccCCC
Q 008060          525 LIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .+.+++.+++.++..+.+|+.+
T Consensus       165 ~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        165 WLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            9888888877666555565543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.33  E-value=2.4e-11  Score=129.14  Aligned_cols=170  Identities=16%  Similarity=0.100  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      .+..+........+.|.+.++.+. +..+.+++.....++..++.++.|+++||+|||+++..+.++..++.++.....+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~  110 (434)
T PRK11663         32 YALFYFTRKSFNAAMPEMLADLGL-SRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS  110 (434)
T ss_pred             HHHHHHhhhhHHHhhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH
Confidence            333333344556678888888766 5667788888889999999999999999999999999888888887776654321


Q ss_pred             ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060          365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW  444 (579)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (579)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (434)
T PRK11663        111 --------------------------------------------------------------------------------  110 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060          445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF  524 (579)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~  524 (579)
                               .+..++...+...+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||++.|
T Consensus       111 ---------~~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f  180 (434)
T PRK11663        111 ---------LWAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM  180 (434)
T ss_pred             ---------HHHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence                     111222222222223222 3455678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCC
Q 008060          525 LIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      .+.+++.++..++.++.+||+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            998887776655545555654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.33  E-value=5.8e-11  Score=125.57  Aligned_cols=158  Identities=13%  Similarity=0.129  Sum_probs=133.6

Q ss_pred             hhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 008060           51 SGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGR  129 (579)
Q Consensus        51 ~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R  129 (579)
                      ....|.+.++ +|.+....   +++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+...+..
T Consensus       243 ~~~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQI---GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCL  319 (417)
T ss_pred             HHhhHHHHHhccCCChhHh---HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            3445666555 88877776   9999999999999999999999998888888888888888888888888888888899


Q ss_pred             HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH-HHHh
Q 008060          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI-LMLL  208 (579)
Q Consensus       130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i-~~~~  208 (579)
                      ++.|++.+...+...+++.|..|++.|+++++++.....+|..+|+.+.+.+.+..+ ++..+++.++..++..+ .+..
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  398 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLV  398 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHh
Confidence            999999888778888899999999999999999999999999999999999999877 88888777765555444 4566


Q ss_pred             ccCC
Q 008060          209 LPES  212 (579)
Q Consensus       209 lpes  212 (579)
                      +++.
T Consensus       399 ~~~~  402 (417)
T PRK10489        399 LGEL  402 (417)
T ss_pred             cccc
Confidence            6665

>PRK12382 putative transporter; Provisional

Probab=99.32  E-value=3.7e-11  Score=125.93  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=127.8

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l  131 (579)
                      ...|.+.++.+.+  +.   ++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus       237 ~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        237 TFVSLYFASKGWA--MA---GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHhcCCc--hh---HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3444444555543  23   566677888889999999999999999999999999988888888888888888899999


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~  207 (579)
                      .|++.+...+.....+.|.+|+++|++++++++....+|..++|.+.+++.+..+ |++.|.+.+++.++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            9999998888888889999999999999999999999999999999999999887 99999999887777666543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=3.1e-11  Score=125.67  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 008060          293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPM  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (579)
                      .......|.+.++.+. +....+++.....++.+++.++.|+++||+|||+.+..+..+..++..++....+        
T Consensus        11 ~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------   81 (399)
T TIGR00893        11 ANLSFAAPMLQEDLGL-SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA--------   81 (399)
T ss_pred             HhhhHhHHHHHHhhCC-ChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC--------
Confidence            4444555666666655 5667788888899999999999999999999999999888887777776655421        


Q ss_pred             cccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCC
Q 008060          373 VSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSK  452 (579)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (579)
                                                                                                      
T Consensus        82 --------------------------------------------------------------------------------   81 (399)
T TIGR00893        82 --------------------------------------------------------------------------------   81 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 008060          453 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISV  532 (579)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~  532 (579)
                       .+...+...+.+.+ .....+....++.|.+|++.|+.++|+.+....+|..++|.+.+.+.+..+|++.|.+.+++.+
T Consensus        82 -~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  159 (399)
T TIGR00893        82 -YVSLYILRVLLGAA-EAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGI  159 (399)
T ss_pred             -HHHHHHHHHHHHHH-HHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence             12223333333333 2233455668899999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHhhhhccCCCC
Q 008060          533 AALLFVLIFVPETKG  547 (579)
Q Consensus       533 ~~~~~~~~~~~~~~~  547 (579)
                      +..++.++..||++.
T Consensus       160 ~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       160 IWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHhhheecCCCC
Confidence            777766666666544

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.29  E-value=7.3e-11  Score=126.74  Aligned_cols=170  Identities=14%  Similarity=0.110  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           35 SAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        35 ~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      .+++..++............|. +.+++|.+..+.   ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a---~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        262 LLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA---INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            3344444444444444555664 567799988887   889999999999999999999999999988766544443332


Q ss_pred             --HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhcc-------
Q 008060          114 --VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTR-------  183 (579)
Q Consensus       114 --ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~-------  183 (579)
                        +.....++.+.+.+.+++.|++...........+.|.+|+++|+.+.|+.+....+ |..++|.+.|++.+       
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~  418 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP  418 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence              22334456667778888888654333333345677999999999999999988886 77999999999998       


Q ss_pred             -----CcCcchhHHHHhhHHHHHHHHHHHh
Q 008060          184 -----APGTWRWMLGVAGIPALLQFILMLL  208 (579)
Q Consensus       184 -----~~~~Wr~~f~i~~i~~l~~~i~~~~  208 (579)
                           ..+ |+..|++.++..++..+..++
T Consensus       419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        419 IFGYTLTG-WAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cccccccC-hHHHHHHHHHHHHHHHHHHHH
Confidence                 444 999999887777666555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.29  E-value=1.4e-10  Score=121.45  Aligned_cols=149  Identities=13%  Similarity=0.117  Sum_probs=120.5

Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH-HHHHhcchhhHHHHHHHH
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA-VIMAAAPNPGALITGRVF  131 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~-ll~~~a~~~~~ll~~R~l  131 (579)
                      ..|.+.+++|.+..+.   +++.+...++..+++++.|+++||+|||++.. +..+..++. ++....++.+.+++..++
T Consensus       228 ~~~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l  303 (390)
T PRK03545        228 IEPFVQQVAGLSENFA---TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIF  303 (390)
T ss_pred             HHHHHHHhcCCCccHH---HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            3345566678877777   88999999999999999999999999887544 444444443 334556788888888999


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~  207 (579)
                      .|++.+...+.....+.+..| ++|+++++++.....+|..+|++++|.+.+..+ ++..|++.+.+.++..+...
T Consensus       304 ~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        304 WGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHH
Confidence            999887777777788888876 578999999999999999999999999999887 99999999988777666643

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.29  E-value=1.5e-09  Score=110.98  Aligned_cols=311  Identities=11%  Similarity=0.060  Sum_probs=193.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF  110 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~  110 (579)
                      ....+|+..|+..+ +-.-..+.|++.+. .|++.++..  .-+.-+..-.+....++...+.|..|.|++++++.+...
T Consensus         6 ~~~llc~~gf~~~f-rPsEPfl~~yL~~~~kn~T~~qv~--~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    6 ITLLLCLFGFFKEF-RPSEPFLTPYLTGPDKNFTEEQVN--NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI   82 (412)
T ss_pred             HHHHHHHHHHHHhc-CCCCccchHHHcCCccCCCHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33444444444332 22223344555554 677777663  446666666778888999999999999999999999999


Q ss_pred             HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cch
Q 008060          111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWR  189 (579)
Q Consensus       111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr  189 (579)
                      +..++.-+.++...+-+..++.|++.+ ...+-.+++-...|+++-.++.+...++.-+|..++.++|-.+....+ +.+
T Consensus        83 ~t~~lll~~~sv~~mq~~q~~yg~~~a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~  161 (412)
T PF01770_consen   83 ITWLLLLFGTSVLAMQLMQFFYGLATA-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF  161 (412)
T ss_pred             HHHHHHHHHCcHHHHHHHHHHHHHHHH-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            999999999999999999999999887 467777888888898888999999999999999999999988876432 356


Q ss_pred             hHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCC--CchhhhHHHhhhhhh---hhHHhhccchhhhH
Q 008060          190 WMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPA--HEVETEIRDLKESVD---KEIEEEGSSEKINL  264 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  264 (579)
                      ..+.+......+..+..+++|..++-...+.+.++... .+.....  ++.++...+..+...   ......-..-..++
T Consensus       162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  240 (412)
T PF01770_consen  162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF  240 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence            66666665555566666778876653322222111100 0000000  000000000000000   00000011123456


Q ss_pred             HHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060          265 VKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (579)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (579)
                      ++..++|.++.+.+...     +...++..+.+|.....++.  ........|.+-....+.+.++++..|++..+..+.
T Consensus       241 ~~~y~~~~ll~WSlWWa-----~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~  315 (412)
T PF01770_consen  241 KSCYSNPRLLLWSLWWA-----FATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW  315 (412)
T ss_pred             HHHhcCchHHHHHHHHH-----HHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH
Confidence            66777777766555433     33446677777776666665  222334456666777777888889999986666665


Q ss_pred             hhhHHHHHHH
Q 008060          343 KLLVISLSGV  352 (579)
Q Consensus       343 ~~~~~~~~~~  352 (579)
                      .-+.++....
T Consensus       316 ~~l~l~~~S~  325 (412)
T PF01770_consen  316 GELALGVFSL  325 (412)
T ss_pred             HHHHHHHHHH
Confidence            5555444433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.29  E-value=1.1e-10  Score=121.78  Aligned_cols=168  Identities=16%  Similarity=0.054  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCC
Q 008060          290 VGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSH  369 (579)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (579)
                      .+........|.+.++.+. +..+.++......++..++.++.|++.||+|||+.+..+..+..++.+++....+     
T Consensus        19 ~~~~~~~~~~p~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~-----   92 (385)
T TIGR00710        19 LGIDMYLPAFPEIAADLST-PASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN-----   92 (385)
T ss_pred             HHHHHhcccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            3444454556777777766 5567788888889999999999999999999999999888888777776654321     


Q ss_pred             CCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCC
Q 008060          370 SPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGC  449 (579)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (579)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (385)
T TIGR00710        93 --------------------------------------------------------------------------------   92 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Q 008060          450 PSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGV  529 (579)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~  529 (579)
                          .+. +....++.+.......+....+..|.+|++.|+.++|+.+....+|..++|.+.+.+.+..||+..|++.++
T Consensus        93 ----~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~  167 (385)
T TIGR00710        93 ----IET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL  167 (385)
T ss_pred             ----HHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence                111 222222222222223445567889999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHhhhhccCCCCC
Q 008060          530 ISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       530 ~~~~~~~~~~~~~~~~~~~  548 (579)
                      +.++..+..++..||++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       168 AGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHHHHHhCCCCCCC
Confidence            8888777766667776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.28  E-value=2.7e-11  Score=126.27  Aligned_cols=157  Identities=17%  Similarity=0.098  Sum_probs=120.1

Q ss_pred             HHhhhhhhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH--HHHH
Q 008060           41 LLFGYDTGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA--VIMA  117 (579)
Q Consensus        41 ~~~~~~~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~--ll~~  117 (579)
                      +.............|.+. ++++.+..+.   +.+.+...++..++.++.|+++||+|||+.+..+..+..+..  +...
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~  305 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSA---LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA  305 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444445556554 6788877777   888899999999999999999999999998775554443332  2222


Q ss_pred             h--cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHH
Q 008060          118 A--APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGV  194 (579)
Q Consensus       118 ~--a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i  194 (579)
                      +  .++.+.+++..++.|++.+...+...+++.|.+|+++|++++++ ...+..+|..++|.+++++.+..++|++.++.
T Consensus       306 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       306 LLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHH
Confidence            2  35677777888999999988999999999999999999999998 45666789999999999999887768888777


Q ss_pred             hhHHHH
Q 008060          195 AGIPAL  200 (579)
Q Consensus       195 ~~i~~l  200 (579)
                      ..+..+
T Consensus       386 ~~~~~l  391 (394)
T TIGR00883       386 LAALAL  391 (394)
T ss_pred             HHHHHH
Confidence            665544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.28  E-value=6.3e-11  Score=126.89  Aligned_cols=180  Identities=15%  Similarity=0.071  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           30 LRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      +..+....+..+.............|.+.+++|.+..+.   ++......++..++.++.|+++||+|||+.+.++.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  359 (481)
T TIGR00879       283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA---FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGM  359 (481)
T ss_pred             HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            334444444444444444455566778888888887666   88888899999999999999999999999999998888


Q ss_pred             HHHHHHHHh-----cc------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH
Q 008060          110 FVGAVIMAA-----AP------NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN  178 (579)
Q Consensus       110 ~i~~ll~~~-----a~------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~  178 (579)
                      +++.++.++     .+      +...+....++.+.......+....++.|.+|+++|++++++......+|.++++.+.
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~  439 (481)
T TIGR00879       360 AICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLF  439 (481)
T ss_pred             HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887777652     11      2223333333333322334466667789999999999999999999999999999999


Q ss_pred             HHhccCcCcchhHHHHhhHHHHHHHHHH-HhccCCh
Q 008060          179 LAFTRAPGTWRWMLGVAGIPALLQFILM-LLLPESP  213 (579)
Q Consensus       179 ~~l~~~~~~Wr~~f~i~~i~~l~~~i~~-~~lpesp  213 (579)
                      +.+.+..+ |++.|++.++++++..+.. ++.||++
T Consensus       440 ~~~~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       440 PTMLESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence            99988776 9999999888877776664 4556653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00897 2A0118 polyol permease family

Probab=99.28  E-value=1.7e-10  Score=121.46  Aligned_cols=157  Identities=12%  Similarity=0.020  Sum_probs=120.7

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHH-HHHHHHHHHHHHHH-----hcc
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSIL-VADFLFFVGAVIMA-----AAP  120 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~-~~~~l~~i~~ll~~-----~a~  120 (579)
                      ........|.+.+++|.+..+.   +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+...     ..+
T Consensus       238 ~~~~~~~~p~~~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~  314 (402)
T TIGR00897       238 LFGFAVFLPMFVAELGFSTSEW---LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGH  314 (402)
T ss_pred             HHHHHHHHHHHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            3344456677778888887777   88888899999999999999999999988764 33333333333322     134


Q ss_pred             hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHH
Q 008060          121 NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (579)
Q Consensus       121 ~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l  200 (579)
                      +.+.+++..++.|++.+...+. ...+.|..| ++|++++|+.+....+|..++|.+++.+.+..+ |+..|++.+++.+
T Consensus       315 ~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~  391 (402)
T TIGR00897       315 SFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYV  391 (402)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHH
Confidence            6777778888999988876554 456677655 579999999999999999999999999999887 9999999988877


Q ss_pred             HHHHHHHhc
Q 008060          201 LQFILMLLL  209 (579)
Q Consensus       201 ~~~i~~~~l  209 (579)
                      +..++..++
T Consensus       392 i~~~~~~~~  400 (402)
T TIGR00897       392 VSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHh
Confidence            776665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.27  E-value=1.4e-10  Score=121.70  Aligned_cols=162  Identities=18%  Similarity=0.118  Sum_probs=126.7

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc-hhhHH
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP-NPGAL  125 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~-~~~~l  125 (579)
                      ........|.+.+++|.+..+.   +.+.+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+
T Consensus       221 ~~~~~~~lp~~l~~~g~s~~~a---g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  297 (393)
T PRK09705        221 YASLIAWLPAFYIEIGASAQYS---GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL  297 (393)
T ss_pred             HHHHHHHHHHHHHHcCCChhhh---hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence            3334445566666788887777   9999999999999999999999999999999888887777766554333 22222


Q ss_pred             HHHHHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          126 ITGRVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       126 l~~R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                        .-++.|++.+...+.......+.++ +++|++.+++.+....++..++|.+.+++.+..++|+..|++.++.+++..+
T Consensus       298 --~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (393)
T PRK09705        298 --WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI  375 (393)
T ss_pred             --HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence              2346688888888877777777775 5788999999999999999999999999999887799999888877766665


Q ss_pred             H-HHhccCCh
Q 008060          205 L-MLLLPESP  213 (579)
Q Consensus       205 ~-~~~lpesp  213 (579)
                      . +.+.||++
T Consensus       376 ~~~~~~~~~~  385 (393)
T PRK09705        376 ITLRFAPARF  385 (393)
T ss_pred             HHHHhccccc
Confidence            5 55667763

>PRK03699 putative transporter; Provisional

Probab=99.26  E-value=1.2e-10  Score=122.32  Aligned_cols=161  Identities=16%  Similarity=0.061  Sum_probs=131.5

Q ss_pred             hhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHH
Q 008060           47 TGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGAL  125 (579)
Q Consensus        47 ~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~l  125 (579)
                      ...+....|.+. +++|.+..+.   +++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+
T Consensus       221 ~~~~~~~~p~~l~~~~g~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  297 (394)
T PRK03699        221 QLTFISWVPEYAQKKFGMSLEDA---GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHh---hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            333444556554 6789888777   999999999999999999999999999999988877777777777777888777


Q ss_pred             HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      .+..++.|++.+..++...++..|..|. ++++..+.......+|..++|.+.+++.+..+ |+..+++.+++.++..+.
T Consensus       298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        298 LYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHH
Confidence            7788899998888888888888887764 46788888888999999999999999999877 999999888887777666


Q ss_pred             HHhccCC
Q 008060          206 MLLLPES  212 (579)
Q Consensus       206 ~~~lpes  212 (579)
                      ...+++.
T Consensus       376 ~~~~~~~  382 (394)
T PRK03699        376 CILLGFV  382 (394)
T ss_pred             HHHHHHH
Confidence            5555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.1e-10  Score=117.38  Aligned_cols=178  Identities=12%  Similarity=0.062  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHH
Q 008060          277 LIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSL  356 (579)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  356 (579)
                      +++..++.+...+..--.+..-.|.+.++.+ .+..+.+.+.+...+..-++.++.|.++||.+.|+.+..++++.++..
T Consensus        30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~-lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n  108 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGG-LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN  108 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence            3344444443333333344455666666655 477888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccc
Q 008060          357 GVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDL  436 (579)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (579)
                      +++.+...                                                                        
T Consensus       109 il~Gfs~s------------------------------------------------------------------------  116 (448)
T COG2271         109 ILFGFSPS------------------------------------------------------------------------  116 (448)
T ss_pred             HHHhhhhH------------------------------------------------------------------------
Confidence            98887632                                                                        


Q ss_pred             cccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHH--HHH
Q 008060          437 CHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSF--LSL  514 (579)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~--g~~  514 (579)
                                        ...+..+..+.+.+...-.|.....+..-+|+++||+..++-|++.++|+++.|.+.  +.+
T Consensus       117 ------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271         117 ------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             ------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence                              122333333334443333566668888899999999999999999999999999999  899


Q ss_pred             HHhcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          515 TQAIGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       515 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      ..+.+|+..|++-++++++..++.++..+++
T Consensus       179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8888999999999999999888877766543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.25  E-value=1.7e-10  Score=120.96  Aligned_cols=162  Identities=19%  Similarity=0.092  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060          294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (579)
                      ......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+.+++.++.....+         
T Consensus        38 ~~~~~l~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------  107 (394)
T PRK10213         38 LPVSLLTPMAQDLGI-SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS---------  107 (394)
T ss_pred             HHHhhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh---------
Confidence            334456777777666 5566677777788889999999999999999999999999888887766554311         


Q ss_pred             ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060          374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF  453 (579)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (579)
                                                                                                      
T Consensus       108 --------------------------------------------------------------------------------  107 (394)
T PRK10213        108 --------------------------------------------------------------------------------  107 (394)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060          454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA  533 (579)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~  533 (579)
                      .+..++.-.+.+.+.+ ...+....++.|.+|++.|+.+.++......+|..++|.+.+.+.+..||++.|++.+++.++
T Consensus       108 ~~~l~~~r~l~G~~~g-~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~  186 (394)
T PRK10213        108 FSLLLIGRACLGLALG-GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVL  186 (394)
T ss_pred             HHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence            1222332233333222 234556678889999999999999999999999999999999999999999999998887777


Q ss_pred             HHHHhhhhccCCC
Q 008060          534 ALLFVLIFVPETK  546 (579)
Q Consensus       534 ~~~~~~~~~~~~~  546 (579)
                      ..++.....||++
T Consensus       187 ~~l~~~~~~p~~~  199 (394)
T PRK10213        187 CIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHCCCCC
Confidence            6655545567653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.25  E-value=2e-10  Score=119.97  Aligned_cols=150  Identities=15%  Similarity=0.161  Sum_probs=122.9

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF  131 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l  131 (579)
                      ..+|.+.++.|.+....   +++.+...++..+++++.|+++||+|+|+++..+..+.+++.+...  . .......+++
T Consensus       221 ~~lp~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l  294 (381)
T PRK03633        221 GLMPLYLNHQGMSDASI---GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFI  294 (381)
T ss_pred             HHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHH
Confidence            34576666778777666   8889999999999999999999999999999888888777665543  2 2344556788


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~  208 (579)
                      .|++.....|...+.+.|..|+++++.+.+.+....++|.++||.+++++.+..+ |++.|.+.+.+.++..+.++.
T Consensus       295 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        295 LGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHh
Confidence            8888777889999999999998888888888888999999999999999999887 999999988877766555444

>PRK09952 shikimate transporter; Provisional

Probab=99.25  E-value=3e-10  Score=120.91  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=114.1

Q ss_pred             hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh---c-chhhHHHHHHHH
Q 008060           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA---A-PNPGALITGRVF  131 (579)
Q Consensus        56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~---a-~~~~~ll~~R~l  131 (579)
                      .+.+++|.+....   ..+..+..+...++.++.|+++||+|||++++.+.++..++.+....   . ++.+.+++..++
T Consensus       276 y~~~~~g~s~~~~---~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        276 YSTQNLGLPRELF---LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             HHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            4556778766544   44445556667788899999999999999988887665554433322   2 234455556677


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCc-CcchhHHHHhhHHHHHHHHHHHhc
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAP-GTWRWMLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~-~~Wr~~f~i~~i~~l~~~i~~~~l  209 (579)
                      .|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+.+.++..++..+..+.+
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            788888888888899999999999998888854 445589999999999998744 358988888888777777776666


Q ss_pred             cCC
Q 008060          210 PES  212 (579)
Q Consensus       210 pes  212 (579)
                      +|+
T Consensus       433 ~~~  435 (438)
T PRK09952        433 KDN  435 (438)
T ss_pred             ccc
Confidence            665

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.25  E-value=7.3e-11  Score=127.72  Aligned_cols=146  Identities=16%  Similarity=0.089  Sum_probs=114.1

Q ss_pred             hhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc--chhhHHH
Q 008060           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA--PNPGALI  126 (579)
Q Consensus        50 ~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a--~~~~~ll  126 (579)
                      ....+|.+. +++|.+..+.   +++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++....  .+.+.+.
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~---g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTV---ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLG  370 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            345566655 5888888777   999999999999999999999999999999888877766665544333  3444444


Q ss_pred             HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHH
Q 008060          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPA  199 (579)
Q Consensus       127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~  199 (579)
                      +..++.+.......+....++.|.+|+++|++++++......+|..+||.+++.+.+..+ |+..+...+...
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~  442 (496)
T PRK03893        371 LLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSL  442 (496)
T ss_pred             HHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHH
Confidence            555555444334456667789999999999999999999999999999999999999887 888876655443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.24  E-value=2.8e-10  Score=119.32  Aligned_cols=175  Identities=17%  Similarity=0.058  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060          283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      ...+.+-.+........|.+.++.+. +....++......++.+++.++.|+++||+|||+.+..+..+..++..++...
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~   88 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNA-SEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA   88 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555666678888877766 55667777888888889999999999999999999998888877777665543


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060          363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR  442 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (579)
                      .+                                                                              
T Consensus        89 ~~------------------------------------------------------------------------------   90 (392)
T PRK10473         89 ET------------------------------------------------------------------------------   90 (392)
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060          443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW  522 (579)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~  522 (579)
                                 .+..++...+.+ .......+....++.|.+|++.|+.+.|+.+....++..++|.+.+.+.+..||++
T Consensus        91 -----------~~~~~~~~~l~g-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~  158 (392)
T PRK10473         91 -----------SSLFLAGRFLQG-IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQS  158 (392)
T ss_pred             -----------HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH
Confidence                       111122222222 21112234556788999999999999999999999999999999998888889999


Q ss_pred             hhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          523 TFLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      .|++.+++.++..++.++..||++.+
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        159 LFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999988888777766667776543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=3.1e-10  Score=115.36  Aligned_cols=170  Identities=19%  Similarity=0.095  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060          283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      +..|......+.....+|.+-++.+. +...++.+...++.+..++.++...+.||+.||++++....+++++-++..+.
T Consensus        20 ~~~F~igttEfv~~gLLp~iA~dl~v-s~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA   98 (394)
T COG2814          20 LAAFAIGTTEFVPVGLLPPIAADLGV-SEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA   98 (394)
T ss_pred             HHHHHHHhHHHHHHhchHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh
Confidence            44444455566677778888888877 66778999999999999999999999999999999999999999998887776


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060          363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR  442 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (579)
                      .+                                                                              
T Consensus        99 p~------------------------------------------------------------------------------  100 (394)
T COG2814          99 PS------------------------------------------------------------------------------  100 (394)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            43                                                                              


Q ss_pred             cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060          443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW  522 (579)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~  522 (579)
                                  +..+...=+........+.++..++..++.|+++|+.+++++.+...++..+|..+..++-|..||+.
T Consensus       101 ------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814         101 ------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence                        22233333333333334456777899999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhcc
Q 008060          523 TFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      +|+..+++.++..+..+..+|
T Consensus       169 ~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         169 TFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999988898

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.24  E-value=4.3e-10  Score=119.45  Aligned_cols=162  Identities=13%  Similarity=0.056  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060          289 FVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGVLSAVFHETT  367 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (579)
                      ...++.+..++|.|+++..+.+...++.+.........++.+++|+++||+ |||+.+.++.++..++.+++......  
T Consensus        22 ~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~--   99 (493)
T PRK15462         22 YFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH--   99 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence            445677888899999876555777788888888888899999999999998 99999999999888887655422100  


Q ss_pred             CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060          368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR  447 (579)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (579)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (493)
T PRK15462        100 --------------------------------------------------------------------------------   99 (493)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060          448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL  525 (579)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~  525 (579)
                            .....+.+.+...+.+ ...+...++++|.+|++  .|+++.++.++..++|++++|.+.+++.+..||++.|.
T Consensus       100 ------~~~~~l~l~li~iG~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~  172 (493)
T PRK15462        100 ------PSFLYLSLAIIVCGYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFG  172 (493)
T ss_pred             ------hhHHHHHHHHHHHhcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHH
Confidence                  0111222222222222 12344457889999875  69999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 008060          526 IFGVISVAALLFVL  539 (579)
Q Consensus       526 ~~~~~~~~~~~~~~  539 (579)
                      +.++..+++.+..+
T Consensus       173 iaaigm~l~li~~~  186 (493)
T PRK15462        173 LAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87776666655543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.23  E-value=4.7e-11  Score=123.76  Aligned_cols=165  Identities=13%  Similarity=0.102  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS  370 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (579)
                      .........|.+.++.+. +..+.+++.....++.+++.++.|+++||+|||+++..+..+..++.+++....+      
T Consensus        10 ~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------   82 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGL-SKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS------   82 (379)
T ss_pred             hHHhhhhhhHHHHHHhCC-CHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh------
Confidence            344555566766666565 5667788888889999999999999999999999999998888888777665421      


Q ss_pred             CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060          371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP  450 (579)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (579)
                                                                                                      
T Consensus        83 --------------------------------------------------------------------------------   82 (379)
T TIGR00881        83 --------------------------------------------------------------------------------   82 (379)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHH-HHHHHHHHhcccchhhHHHHH
Q 008060          451 SKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVA-QSFLSLTQAIGTSWTFLIFGV  529 (579)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~-~~~g~~~~~~g~~~~~~~~~~  529 (579)
                         .+..++.. ++.+.......+...+++.|.+|++.|+.++|+.+....+|..++| .+.+.+.+..+|++.|++.++
T Consensus        83 ---~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (379)
T TIGR00881        83 ---LWVMAALW-ALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI  158 (379)
T ss_pred             ---HHHHHHHH-HHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence               12222322 2223333333566678999999999999999999999999999999 466667777889999998888


Q ss_pred             HHHHHHHHhhhhccCCC
Q 008060          530 ISVAALLFVLIFVPETK  546 (579)
Q Consensus       530 ~~~~~~~~~~~~~~~~~  546 (579)
                      +.++..++.+++.||++
T Consensus       159 ~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       159 IAIIVSLICFLLLRDSP  175 (379)
T ss_pred             HHHHHHHHHheeeCCCc
Confidence            88777666666666543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.23  E-value=4.3e-10  Score=121.13  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=117.7

Q ss_pred             hhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--h-hh-H
Q 008060           49 VISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--N-PG-A  124 (579)
Q Consensus        49 ~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~-~~-~  124 (579)
                      ......|.+.+++|.+....   ++......+...++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ .
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~---~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~  365 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV  365 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence            34455678888888877666   6666677888889999999999999999999999999888877765431  2 11 2


Q ss_pred             HHHHHHHHHhhchh-hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc------cCcCcchhHHHHhhH
Q 008060          125 LITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT------RAPGTWRWMLGVAGI  197 (579)
Q Consensus       125 ll~~R~l~Gig~g~-~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~------~~~~~Wr~~f~i~~i  197 (579)
                      .....++.+.+.+. ..+....++.|.+|+++|+.++++......+|.++++.+.+.+.      +..+ |++.|++.++
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~  444 (479)
T PRK10077        366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGC  444 (479)
T ss_pred             HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHH
Confidence            22233444444433 23667889999999999999999999999999988876665443      4455 8888988887


Q ss_pred             HHHHHHHH-HHhccCC
Q 008060          198 PALLQFIL-MLLLPES  212 (579)
Q Consensus       198 ~~l~~~i~-~~~lpes  212 (579)
                      ++++..++ +++.||+
T Consensus       445 ~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        445 MGVLAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHHHHhccccC
Confidence            76666665 4556776

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.22  E-value=1.1e-10  Score=125.98  Aligned_cols=174  Identities=17%  Similarity=0.124  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060          283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      ...+.............|.+.++.+. +....++......++.+++.++.|+++||+|||+.+..+..+..++.++....
T Consensus         9 ~~~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   87 (485)
T TIGR00711         9 LGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA   87 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC-ChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc
Confidence            33344444556666778888877766 55667888888999999999999999999999999999888888777665433


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060          363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR  442 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (579)
                      .                                                                               
T Consensus        88 ~-------------------------------------------------------------------------------   88 (485)
T TIGR00711        88 P-------------------------------------------------------------------------------   88 (485)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 008060          443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSW  522 (579)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~  522 (579)
                                 ++..++...++.+.......+...+++.|.+|++.|+.++++......+|..++|.+.+.+.+..||++
T Consensus        89 -----------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~  157 (485)
T TIGR00711        89 -----------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRW  157 (485)
T ss_pred             -----------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCcee
Confidence                       111133333333333333455667889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhccCCCC
Q 008060          523 TFLIFGVISVAALLFVLIFVPETKG  547 (579)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~  547 (579)
                      .|++.+.+.++..++.++..||+++
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       158 IFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             hhhhhhHHHHHHHHHHHHHcCCccc
Confidence            9999888888777776666776543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.22  E-value=6e-10  Score=116.84  Aligned_cols=172  Identities=15%  Similarity=0.052  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060          283 LQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      +..+.............|.+.++.+. +..+.++......++.+++.++.|+++||+|||+++..+..+.+++.++....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~l~~~~~~-s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   97 (405)
T TIGR00891        19 LGWLLDAFDFFLVALVLAEVAGEFGL-TTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA   97 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence            33444445555666667777666666 55667888888889999999999999999999999998888777776665543


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060          363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR  442 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (579)
                      .+                                                                              
T Consensus        98 ~~------------------------------------------------------------------------------   99 (405)
T TIGR00891        98 PG------------------------------------------------------------------------------   99 (405)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--c
Q 008060          443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--T  520 (579)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~  520 (579)
                                 .+..++...+.+ .......+...+++.|.+|++.|+.++|+.++...+|.++++.+.+.+.+..+  |
T Consensus       100 -----------~~~l~~~~~l~G-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w  167 (405)
T TIGR00891       100 -----------YITMFIARLVIG-IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGW  167 (405)
T ss_pred             -----------HHHHHHHHHHHH-hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH
Confidence                       111222222222 22223344556788999999999999999999999999999999999888766  8


Q ss_pred             chhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          521 SWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      ++.|.+.++..++..+ .....||++
T Consensus       168 ~~~f~~~~~~~~~~~~-~~~~~~~~~  192 (405)
T TIGR00891       168 RALFFISILPIIFALW-LRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhCCCCh
Confidence            8888776655555433 334566654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.21  E-value=2.4e-10  Score=117.92  Aligned_cols=131  Identities=15%  Similarity=0.209  Sum_probs=116.8

Q ss_pred             hhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch-hhHHHHHH
Q 008060           52 GALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN-PGALITGR  129 (579)
Q Consensus        52 ~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~-~~~ll~~R  129 (579)
                      ...|.+.++ ++.+..+.   +++.+...++..++.++.+++.||+|||+.+..+..+.+++.++..+.++ ++.+++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHY---GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLW  308 (365)
T ss_pred             HHhHHHHHHHhCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Confidence            455666554 78877777   99999999999999999999999999999999888888888888887774 88888999


Q ss_pred             HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      ++.|++.+...+...+++.|.+|+++|+++.++......+|..+++.+++.+.+..
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999988753

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.21  E-value=4.6e-10  Score=117.28  Aligned_cols=147  Identities=12%  Similarity=0.061  Sum_probs=121.9

Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFV  132 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~  132 (579)
                      ..|.+.+|.|.+..+.   |.+.+...++..+..++.|++.||+|+|+++..+.++.+++.++.+++++.+.+++..++.
T Consensus       227 ~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  303 (382)
T PRK11128        227 FSAIYWQAAGYSASTI---GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILH  303 (382)
T ss_pred             HHHHHHHHCCCCHhHH---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            3345556788877676   8888899999999999999999999999999999999999888888899999999999999


Q ss_pred             HhhchhhhhhHhHhhhhcCCcccchhhhhhhH-HHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          133 GLGVGMASMTSPLYISEASPAKIRGALVSTNG-FLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       133 Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~-~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      |++.+...+....++.+. +++++++..+.+. ...++|..+||.++|.+.+..+ + ..|+..+++.++.+++
T Consensus       304 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        304 CGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            999998889998888887 5556788888875 5567888999999999999887 6 4666666555544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.21  E-value=5.7e-10  Score=117.29  Aligned_cols=167  Identities=13%  Similarity=-0.026  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060          288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT  367 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (579)
                      ...+.+....+.|.++++..+.+....++......+...+..++.|+++||+|||+++..+..+..++.+.+....+   
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~---   98 (400)
T PRK11646         22 VVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE---   98 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc---
Confidence            34455666777788876665557788888888888888888999999999999999999999888888777654311   


Q ss_pred             CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060          368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR  447 (579)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (579)
                                                                                                      
T Consensus        99 --------------------------------------------------------------------------------   98 (400)
T PRK11646         99 --------------------------------------------------------------------------------   98 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 008060          448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIF  527 (579)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~  527 (579)
                            .|...+...+..... ....+...+++.|.+|++.|+.++|+.+....+|..++|.+.+.+. ..||++.|++.
T Consensus        99 ------~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~  170 (400)
T PRK11646         99 ------PWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG  170 (400)
T ss_pred             ------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence                  222233322222222 2223445677889999999999999999999999999999999998 67999999988


Q ss_pred             HHHHHHHHHHhhhhccCC
Q 008060          528 GVISVAALLFVLIFVPET  545 (579)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~  545 (579)
                      +++.++..++..+..||.
T Consensus       171 ~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        171 AVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHhCCcc
Confidence            888777766555556654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.20  E-value=1.7e-10  Score=118.52  Aligned_cols=167  Identities=22%  Similarity=0.185  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCC
Q 008060          289 FVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTS  368 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (579)
                      ...........|.++.+..+.+..+.+++.....++..++.++.|+++||+|||+++..+..+.+++.++..+. +    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~----   83 (352)
T PF07690_consen    9 GFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-S----   83 (352)
T ss_dssp             HHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-C----
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-h----
Confidence            33445555566634444444466778888888899999999999999999999999999998888884444432 1    


Q ss_pred             CCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccC
Q 008060          369 HSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRG  448 (579)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (579)
                                                                                                      
T Consensus        84 --------------------------------------------------------------------------------   83 (352)
T PF07690_consen   84 --------------------------------------------------------------------------------   83 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 008060          449 CPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFG  528 (579)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~  528 (579)
                          ..| .++...+..+.......+....++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+..||++.|++.+
T Consensus        84 ----~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~  158 (352)
T PF07690_consen   84 ----NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISA  158 (352)
T ss_dssp             ----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHH
T ss_pred             ----hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccccc
Confidence                022 233333333333333456667899999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHHHHhhhhccCC
Q 008060          529 VISVAALLFVLIFVPET  545 (579)
Q Consensus       529 ~~~~~~~~~~~~~~~~~  545 (579)
                      ++.++..++...+.++.
T Consensus       159 ~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEP  175 (352)
T ss_dssp             HHHHHHHHHHHCCC---
T ss_pred             chhhhhhhhHhhhhhhc
Confidence            99999877544444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.19  E-value=5e-09  Score=113.02  Aligned_cols=156  Identities=14%  Similarity=0.155  Sum_probs=121.4

Q ss_pred             hhhhhhhhcccccchhhHHHHHH-HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhc-chhhHHHH
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIV-SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALIT  127 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~-s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a-~~~~~ll~  127 (579)
                      ..|.+.+++|.+..+.   +++. ....++..++.+++|+++||+|+|+.+.++.++.+++.++.   +.. ++.+.+.+
T Consensus       245 ~~~~l~~~~G~s~~~~---g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~  321 (491)
T PRK11010        245 TTTFLIRGVGFDAGEV---GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGA  321 (491)
T ss_pred             HHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3345567789888887   8887 46668999999999999999999998777666555444322   333 45555555


Q ss_pred             HHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060          128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (579)
Q Consensus       128 ~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~  207 (579)
                      .-++..++.|...+...++..+..+++.+++..++.+...++|..+++.++|++.+..| |+..|.+.++++++..+...
T Consensus       322 ~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        322 AVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            66776666666667778888999999999999999999999999999999999999877 99999999988888777766


Q ss_pred             hccCC
Q 008060          208 LLPES  212 (579)
Q Consensus       208 ~lpes  212 (579)
                      .++++
T Consensus       401 ~~~~~  405 (491)
T PRK11010        401 VCRQT  405 (491)
T ss_pred             HHHhc
Confidence            55543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.19  E-value=1.9e-10  Score=122.51  Aligned_cols=164  Identities=15%  Similarity=-0.046  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060          295 VMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS  374 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (579)
                      .....|.+. +. +.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.+++........       
T Consensus        46 ~~~~~p~~~-~~-g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  116 (438)
T TIGR00712        46 FALAMPYLV-EQ-GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATS-------  116 (438)
T ss_pred             HHhhhHHHH-Hc-CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccc-------
Confidence            344556544 45 456777888888899999999999999999999999988888777777665543211000       


Q ss_pred             cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060          375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG  454 (579)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (579)
                                                                                                    ..
T Consensus       117 ------------------------------------------------------------------------------~~  118 (438)
T TIGR00712       117 ------------------------------------------------------------------------------SI  118 (438)
T ss_pred             ------------------------------------------------------------------------------hH
Confidence                                                                                          01


Q ss_pred             hHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchhhHHHHHHHHH
Q 008060          455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ-AIGTSWTFLIFGVISVA  533 (579)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~  533 (579)
                      +...+...+...+.+. ..+.....+.|.+|+++||+++|+.++...+++.+++.+.+...+ ..||+..|++.++++++
T Consensus       119 ~~l~~~~~l~g~~~g~-~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i  197 (438)
T TIGR00712       119 AIMFVLLFLNGWFQGM-GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAII  197 (438)
T ss_pred             HHHHHHHHHHHHHhhc-chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1112222222322222 233444677889999999999999999999999999888776554 46899999999998888


Q ss_pred             HHHHhhhhccCCC
Q 008060          534 ALLFVLIFVPETK  546 (579)
Q Consensus       534 ~~~~~~~~~~~~~  546 (579)
                      ..++.++++||++
T Consensus       198 ~~~~~~~~~~~~~  210 (438)
T TIGR00712       198 VALFAFAMMRDTP  210 (438)
T ss_pred             HHHHHHHhccCCH
Confidence            7766666677643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10504 putative transporter; Provisional

Probab=99.18  E-value=6.5e-10  Score=119.53  Aligned_cols=170  Identities=15%  Similarity=0.042  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      .+........+..+.|.+.++.+. +....++......++..++.++.|+++||+|||+++..+..+..++.++.....+
T Consensus        19 ~~~~~~~~~~~~~~~p~~~~~~g~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   97 (471)
T PRK10504         19 FFMQSLDTTIVNTALPSMAQSLGE-SPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT   97 (471)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344444556677788999988766 5566677777778888999999999999999999998887777776665443211


Q ss_pred             ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060          365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW  444 (579)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (579)
                                                                                                      
T Consensus        98 --------------------------------------------------------------------------------   97 (471)
T PRK10504         98 --------------------------------------------------------------------------------   97 (471)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060          445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF  524 (579)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~  524 (579)
                               .+..++..++.+ .......+.....+.|.+|++.|+++.|+.+....+|..++|.+.|.+.+..||++.|
T Consensus        98 ---------~~~l~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f  167 (471)
T PRK10504         98 ---------LNELLLARVLQG-VGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIF  167 (471)
T ss_pred             ---------HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHH
Confidence                     111222222222 2222234555677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhccCC
Q 008060          525 LIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      .+...+..+..+......|+.
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCc
Confidence            998887777777666655554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.18  E-value=5.1e-10  Score=116.92  Aligned_cols=166  Identities=16%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS  370 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (579)
                      .........|.+.++.+. +....++......++..++.++.|+++||+|||+++..+..+.+++.++.....+      
T Consensus        18 ~~~~~~~~l~~~~~~~g~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~------   90 (382)
T PRK10091         18 AEFGIMGVLTELAHDVGI-SIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS------   90 (382)
T ss_pred             hHHHHHhChHHHHHHcCC-CHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc------
Confidence            344555567777777666 5566788888889999999999999999999999999998888887776655321      


Q ss_pred             CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060          371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP  450 (579)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (579)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (382)
T PRK10091         91 --------------------------------------------------------------------------------   90 (382)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 008060          451 SKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVI  530 (579)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~  530 (579)
                         .+..++...+.+.+.+ ...+.......|.+|+++|+.++|+......++..++|.+.+.+.+..||++.|.+.+++
T Consensus        91 ---~~~l~~~r~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~  166 (382)
T PRK10091         91 ---YLMLAIGRLVSGFPHG-AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF  166 (382)
T ss_pred             ---HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence               1222333222222222 123344467788899999999999999999999999999999999989999999999988


Q ss_pred             HHHHHHHhhhhccCCCC
Q 008060          531 SVAALLFVLIFVPETKG  547 (579)
Q Consensus       531 ~~~~~~~~~~~~~~~~~  547 (579)
                      .++..+..++.+||.++
T Consensus       167 ~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        167 NIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHHHHHHHHHhCCCCCc
Confidence            87777666666777543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.18  E-value=1.1e-09  Score=117.83  Aligned_cols=167  Identities=12%  Similarity=0.002  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          285 VFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      ++..+........+.|.+.++.+. +..+.++......++.+++.++.|+++||+|||+++..+.++..++.++.....+
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~~gl-s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s  123 (476)
T PLN00028         45 FFTCFVSTFAAAPLLPIIRDNLNL-TKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS  123 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            333344445555566777777766 5556677777788888999999999999999999988887777776665544321


Q ss_pred             ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060          365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW  444 (579)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (579)
                                                                                                      
T Consensus       124 --------------------------------------------------------------------------------  123 (476)
T PLN00028        124 --------------------------------------------------------------------------------  123 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH--------
Q 008060          445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ--------  516 (579)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~--------  516 (579)
                               .+..++..++.+.+.+ +.. ....+++|.+|++.||.++|+.+....+|+.+++.+.+.+.+        
T Consensus       124 ---------~~~l~~~r~l~G~~~~-~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        124 ---------ATGFIAVRFFIGFSLA-TFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             ---------HHHHHHHHHHHHHHHH-hhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence                     1111222222222221 222 233467899999999999999998888888888776655432        


Q ss_pred             -hcccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          517 -AIGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       517 -~~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                       ..||++.|++.+++.++..++.+++.+
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence             148999999999988877766555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.18  E-value=1.1e-09  Score=115.47  Aligned_cols=165  Identities=12%  Similarity=-0.011  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060          292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP  371 (579)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
                      ...+....|.+.++.+. +....++......++..++.++.|+++||+|||+++..+.....++.+......+       
T Consensus        29 ~~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------  100 (406)
T PRK15402         29 NDMIQPGMLAVVEDFNA-GAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS-------  100 (406)
T ss_pred             hhhHhcchHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc-------
Confidence            33444445666666665 5566777778888889999999999999999999998888777777666544311       


Q ss_pred             ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060          372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS  451 (579)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (579)
                                                                                                      
T Consensus       101 --------------------------------------------------------------------------------  100 (406)
T PRK15402        101 --------------------------------------------------------------------------------  100 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060          452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS  531 (579)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~  531 (579)
                        .+..++...+.+...+ ...+.......|.+|++.|+...++......++..++|.+.+.+.+..+|++.|++.+++.
T Consensus       101 --~~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~  177 (406)
T PRK15402        101 --IEQFTLLRFLQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALA  177 (406)
T ss_pred             --HHHHHHHHHHHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence              1111222222222221 2234456777899999999999999988888999999999999999899999999999888


Q ss_pred             HHHHHHhhhhccCCCC
Q 008060          532 VAALLFVLIFVPETKG  547 (579)
Q Consensus       532 ~~~~~~~~~~~~~~~~  547 (579)
                      ++..+..++..||+++
T Consensus       178 ~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        178 ALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHhCCCCCc
Confidence            8877766666777654

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.18  E-value=1.1e-09  Score=117.61  Aligned_cols=163  Identities=18%  Similarity=0.027  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHH
Q 008060          286 FQQFVGINTVMYYSPTIVQLS--GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      +..-.+++.+..++|.|+++.  .+.+..+++.......++..++.+++|+++|| +|||+++..+..+.+++.+++...
T Consensus        20 ~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~   99 (475)
T TIGR00924        20 LWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS   99 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc
Confidence            334456777888899999875  44567788888888999999999999999999 899999999999988888766643


Q ss_pred             hcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccc
Q 008060          363 FHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESR  442 (579)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (579)
                      .+                                                                              
T Consensus       100 ~~------------------------------------------------------------------------------  101 (475)
T TIGR00924       100 IY------------------------------------------------------------------------------  101 (475)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             cccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008060          443 EWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF---RGVCGGIAATANWISNLIVAQSFLSLTQAIG  519 (579)
Q Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g  519 (579)
                                 .+...+...+. +.......+...++.++.+|++.   |+.+.++.+...++|.+++|.+.+.+.+..|
T Consensus       102 -----------~~~~~~~~~l~-g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924       102 -----------PDLIFYGLGTI-AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             -----------HhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                       11112222222 22222234555678888888754   8889999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHh
Q 008060          520 TSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~  538 (579)
                      |++.|.+.++..+++.+..
T Consensus       170 ~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       170 YHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            9999998887666665443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.18  E-value=7.3e-10  Score=116.95  Aligned_cols=158  Identities=15%  Similarity=0.015  Sum_probs=117.4

Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060          299 SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (579)
                      +|.+.++.+. +............++..++.+..|+++||+|||+++..+..+..++.++.....+              
T Consensus        39 l~~i~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------------  103 (413)
T PRK15403         39 IINVVRDFNA-DVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------------  103 (413)
T ss_pred             HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------------
Confidence            4455555555 5566677778888889999999999999999999999888877777666554311              


Q ss_pred             cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060          379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL  458 (579)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (579)
                                                                                                 .+..+
T Consensus       104 ---------------------------------------------------------------------------~~~l~  108 (413)
T PRK15403        104 ---------------------------------------------------------------------------MTQFL  108 (413)
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       11222


Q ss_pred             HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060          459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      +.-++.+.+.+ ...+.......|.+|++.++..+++.+....++..++|.+.+.+.+..||++.|++.+++.++..++.
T Consensus       109 ~~r~l~Gi~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~  187 (413)
T PRK15403        109 IARFIQGTSIC-FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGL  187 (413)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            22223222222 22334456788999999999999999999999999999999999988899999999999888887766


Q ss_pred             hhhccCCCC
Q 008060          539 LIFVPETKG  547 (579)
Q Consensus       539 ~~~~~~~~~  547 (579)
                      ++.+||+++
T Consensus       188 ~~~lp~~~~  196 (413)
T PRK15403        188 LLAMPETVK  196 (413)
T ss_pred             HHhCCCCcc
Confidence            666788654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.17  E-value=4.2e-10  Score=121.69  Aligned_cols=177  Identities=16%  Similarity=-0.005  Sum_probs=129.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV  358 (579)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  358 (579)
                      ..+.+..+....-...+..-.|.+.++.+. +....++....+.++..++.+..|+++||+|||+++..+..+..++.++
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~-s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~   87 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGA-SGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA   87 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            334444444455555566668888877765 5556778888888888899999999999999999999999988888877


Q ss_pred             HHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccc
Q 008060          359 LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCH  438 (579)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (579)
                      .....+                                                                          
T Consensus        88 ~~~a~~--------------------------------------------------------------------------   93 (495)
T PRK14995         88 AAFSPT--------------------------------------------------------------------------   93 (495)
T ss_pred             HHHcCC--------------------------------------------------------------------------
Confidence            665421                                                                          


Q ss_pred             cccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccc-cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          439 DESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEI-YPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                                     .+..++.-.+.+.+.+ +..+.......+. .|++.|+.++|+......+|..++|.+.+.+.+.
T Consensus        94 ---------------~~~li~~r~l~G~g~~-~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~  157 (495)
T PRK14995         94 ---------------ASWLIATRALLAIGAA-MIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH  157 (495)
T ss_pred             ---------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                           1222333333333322 2333333444454 4778999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          518 IGTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       518 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .||++.|++...+.++..++.++.+|+.+
T Consensus       158 ~gwr~~f~i~~~~~~~~~~l~~~~l~~~~  186 (495)
T PRK14995        158 FYWGSVFLINVPIVLVVMGLTARYVPRQA  186 (495)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999988888887777767777653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.17  E-value=3.5e-10  Score=117.77  Aligned_cols=162  Identities=14%  Similarity=0.003  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060          294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (579)
                      ......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++..++....+         
T Consensus         9 ~~~p~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~---------   78 (377)
T PRK11102          9 MYLPALPVIAADFGV-SAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT---------   78 (377)
T ss_pred             HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc---------
Confidence            344556777777665 5667788888888999999999999999999999999988888887777655321         


Q ss_pred             ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060          374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF  453 (579)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (579)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (377)
T PRK11102         79 --------------------------------------------------------------------------------   78 (377)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060          454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA  533 (579)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~  533 (579)
                      .+...+...+.+ .+.....+...++..|.+|++.|++++++.+....+|..++|.+.+.+.+..||++.|++.+++.++
T Consensus        79 ~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  157 (377)
T PRK11102         79 IDQLIYMRFLHG-LAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAIL  157 (377)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            112222222222 2222233455678889999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHhhhhccCCC
Q 008060          534 ALLFVLIFVPETK  546 (579)
Q Consensus       534 ~~~~~~~~~~~~~  546 (579)
                      ..++..+..||++
T Consensus       158 ~~~~~~~~~~~~~  170 (377)
T PRK11102        158 AAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHhCCccC
Confidence            7777666677654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.16  E-value=1.2e-09  Score=114.66  Aligned_cols=133  Identities=12%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      |.+.++..+...++.++.|++.||+|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+........+..+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888999999999999999999999999999999988888888899999999999999988776666777788888


Q ss_pred             Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      +++.|+...+. ++....+|..+++.++|++.+..| |+..|.+.+++.++..++
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            88888877766 678899999999999999999887 999999988877666554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.16  E-value=6.8e-10  Score=115.07  Aligned_cols=164  Identities=15%  Similarity=0.039  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060          292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP  371 (579)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
                      +..+....|.+.++.+. +..+.+++.....++..++.+..|+++||+|||+++.........+.... ...+       
T Consensus         7 ~~~~~~~lp~i~~~~~~-s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~~-------   77 (368)
T TIGR00903         7 WVTFSPVLSLVAEDIDV-SKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LDPF-------   77 (368)
T ss_pred             HHHHHhhHHHHHHHhCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHhc-------
Confidence            44555667888777776 56677888888889999999999999999999987655444333332211 1101       


Q ss_pred             ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060          372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS  451 (579)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (579)
                                                                                                      
T Consensus        78 --------------------------------------------------------------------------------   77 (368)
T TIGR00903        78 --------------------------------------------------------------------------------   77 (368)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060          452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS  531 (579)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~  531 (579)
                       ..+..++.-.+.+.+  .+.........+|.+|+++|++++++.+....+|..+++.+.+.+.+..||++.|.+.+++.
T Consensus        78 -~~~~l~~~R~l~G~g--~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~  154 (368)
T TIGR00903        78 -NYEWLLACQLLAALG--QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA  154 (368)
T ss_pred             -cHHHHHHHHHHHHhH--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence             011112222222222  22223334555889999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhhhhccCCCC
Q 008060          532 VAALLFVLIFVPETKG  547 (579)
Q Consensus       532 ~~~~~~~~~~~~~~~~  547 (579)
                      ++..++.++.+||.++
T Consensus       155 ~~~~~~~~~~lp~~p~  170 (368)
T TIGR00903       155 AAGIILVLAALPALPF  170 (368)
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            8887777777887643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=2.4e-08  Score=103.87  Aligned_cols=252  Identities=14%  Similarity=0.085  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc
Q 008060           75 VSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAK  154 (579)
Q Consensus        75 ~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~  154 (579)
                      .++.+..+.+++++.+.+.|+.|+|+.+.++...+.+..+.+-+ .|-+.+++.-.+.|+|.+..+..--.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            67788888999999999999999999999999999887777655 45667788899999999999999999999999999


Q ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHhccCcC--------cchhHH----------HHhhHHHHH---HHHHHHhccCCh
Q 008060          155 IRGALVSTNGFLITSGQFLSYLINLAFTRAPG--------TWRWML----------GVAGIPALL---QFILMLLLPESP  213 (579)
Q Consensus       155 ~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~--------~Wr~~f----------~i~~i~~l~---~~i~~~~lpesp  213 (579)
                      .+.+..++..+....+.++|..+...+.....        .-|+.+          .+.+++..+   ..+...+.|.. 
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~-  213 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK-  213 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence            99999999988888888888766654432211        111111          111111111   11111111111 


Q ss_pred             hHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHH
Q 008060          214 RWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGIN  293 (579)
Q Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (579)
                      .      ...+.                        +.. ++......+...+++++++........+...+     ...
T Consensus       214 ~------~~~~~------------------------~~~-~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~-----~~S  257 (461)
T KOG3098|consen  214 D------VVNCK------------------------SSS-ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGL-----ETS  257 (461)
T ss_pred             c------hhhhh------------------------hhc-cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHH-----HHH
Confidence            0      00000                        000 00111112344556666655332222222111     112


Q ss_pred             HHHHHHHHHH---HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          294 TVMYYSPTIV---QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR---TGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       294 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      ......|..+   ...+..+....++.....+++.+++....+.+.+|   +||+++..++..+..++.++.....+
T Consensus       258 f~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p  334 (461)
T KOG3098|consen  258 FWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFP  334 (461)
T ss_pred             HHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhcccc
Confidence            2222223332   24455566667777788888889999999888876   57888888887777776666655444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.15  E-value=1.1e-09  Score=117.70  Aligned_cols=152  Identities=20%  Similarity=0.234  Sum_probs=134.8

Q ss_pred             hhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060           50 ISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (579)
Q Consensus        50 ~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~  128 (579)
                      +..++|.+. +++|.+....   |++.+.+.+|..++.++.+++.+|+++++.+..+.++++++.+..+++++.+..++.
T Consensus       237 ~~aLlPl~a~~~l~~~a~~y---Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGY---GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHH---HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            344567665 5688877777   999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      .++.|++.........+.+.+..|++.|||+++++.+....+..+|.++.|.+.+..+ -+..+.+.++..++..++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence            9999999998888899999999999999999999999999999999999999999887 888888777655544444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.15  E-value=1.6e-09  Score=115.31  Aligned_cols=163  Identities=21%  Similarity=0.253  Sum_probs=140.6

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHHHHHHHHHHHHHh------
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA------  118 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~~l~~i~~ll~~~------  118 (579)
                      .++++.......+++|.+..+.   ..+.-+..+...+|++++|++.||+|.|  ++++.+++++.+..+...+      
T Consensus       298 ~ti~~~~~i~a~~~lg~s~~~l---~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~  374 (477)
T PF11700_consen  298 NTIISFAGIYATEVLGMSTTQL---IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF  374 (477)
T ss_pred             HHHHHHHHHHHHHhcCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3344455556677999999887   7777777888889999999999999999  8988888888665555555      


Q ss_pred             --cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060          119 --APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG  196 (579)
Q Consensus       119 --a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~  196 (579)
                        .++-+.+.+.-++.|++.|..++...++.++..|+++.+..+|++....-....+||++.+.+.+..++-|+.++...
T Consensus       375 ~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~  454 (477)
T PF11700_consen  375 FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLL  454 (477)
T ss_pred             cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence              678888999999999999999999999999999999999999999999999999999999999998888999999888


Q ss_pred             HHHHHHHHHHHhccCC
Q 008060          197 IPALLQFILMLLLPES  212 (579)
Q Consensus       197 i~~l~~~i~~~~lpes  212 (579)
                      ++.++.+++++.++.+
T Consensus       455 ~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  455 VLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHhhccch
Confidence            8888888877777554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.15  E-value=1.3e-09  Score=118.29  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=109.0

Q ss_pred             hhhhhhhhhhhcccccchhh--------HHHH-HHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc
Q 008060           50 ISGALLYIRDDFKSVDRKTL--------LQES-IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP  120 (579)
Q Consensus        50 ~~~~lp~i~~~~~~s~~~~~--------~~g~-l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~  120 (579)
                      .....|.+.++.|.+.....        .... ...+..++..++.++.++++||+|||++++++..+.+++.++.++..
T Consensus       307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~  386 (502)
T TIGR00887       307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY  386 (502)
T ss_pred             cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            33346777777776543210        0011 23344556667888999999999999999888887777766555432


Q ss_pred             h----hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC---------c
Q 008060          121 N----PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG---------T  187 (579)
Q Consensus       121 ~----~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~---------~  187 (579)
                      +    ...+...-+...++.....+....+.+|.+|.+.|++++++.+....+|.++++.+.+.+.+..+         +
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  466 (502)
T TIGR00887       387 NHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW  466 (502)
T ss_pred             HhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence            1    11111111111222222345566778999999999999999999999999999999998877421         2


Q ss_pred             chhHHHHhhHHHHHHHHHHHhccCCh
Q 008060          188 WRWMLGVAGIPALLQFILMLLLPESP  213 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~~~~lpesp  213 (579)
                      +...|++.+++.++..+..+++||+.
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccCC
Confidence            45677777777776666666779983

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.14  E-value=1.3e-09  Score=116.48  Aligned_cols=157  Identities=19%  Similarity=0.137  Sum_probs=108.4

Q ss_pred             hhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHH-HHHHHHHHHHHHHHHh--cch
Q 008060           48 GVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSI-LVADFLFFVGAVIMAA--APN  121 (579)
Q Consensus        48 ~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl-~~~~~l~~i~~ll~~~--a~~  121 (579)
                      ......+|.+. ++.|.+..+.   +++...+.++..++.++.|+++||+  |||+.. +....+..++.++..+  ..+
T Consensus       270 ~~~~~~~P~~l~~~~g~s~~~~---~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~  346 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGN  346 (452)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccC
Confidence            33445666654 4578777666   8888889999999999999999999  555432 2222333333332222  334


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHH-HHHHHHHHhccCcCcchhHHHHhhHHHH
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQF-LSYLINLAFTRAPGTWRWMLGVAGIPAL  200 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~-ig~~l~~~l~~~~~~Wr~~f~i~~i~~l  200 (579)
                      .+...+..++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.+..+ |+..|++.++.++
T Consensus       347 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~  425 (452)
T PRK11273        347 PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSI  425 (452)
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHH
Confidence            444555555556543333333345678999999999999999888888765 47999999999887 9999998888777


Q ss_pred             HHHHHHHh
Q 008060          201 LQFILMLL  208 (579)
Q Consensus       201 ~~~i~~~~  208 (579)
                      +.++....
T Consensus       426 ~~~~~~~~  433 (452)
T PRK11273        426 LAVILLIV  433 (452)
T ss_pred             HHHHHHHH
Confidence            77666443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.13  E-value=2.5e-09  Score=112.21  Aligned_cols=163  Identities=12%  Similarity=0.046  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 008060          294 TVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMV  373 (579)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (579)
                      ......|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.+......+         
T Consensus        26 ~~~p~~~~i~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---------   95 (394)
T PRK11652         26 IYVPAIADMARDLNV-REGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS---------   95 (394)
T ss_pred             HHhccHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc---------
Confidence            333446777777666 5667788888888999999999999999999999998888877777666544211         


Q ss_pred             ccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCc
Q 008060          374 SAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKF  453 (579)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (579)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (394)
T PRK11652         96 --------------------------------------------------------------------------------   95 (394)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 008060          454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVA  533 (579)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~  533 (579)
                      .+..++...+.+.+.+ ...+....+..|.++.+.++.+.++.+....++..++|.+.+.+.+..||++.|.+.+++.++
T Consensus        96 ~~~l~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~  174 (394)
T PRK11652         96 LTVLIAASAIQGLGTG-VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG  174 (394)
T ss_pred             HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            1111222222222211 122334456678888889999999999999999999999999999989999999998887776


Q ss_pred             HHHHhhhhccCCCC
Q 008060          534 ALLFVLIFVPETKG  547 (579)
Q Consensus       534 ~~~~~~~~~~~~~~  547 (579)
                      ..++..+..||++.
T Consensus       175 ~~~~~~~~~~~~~~  188 (394)
T PRK11652        175 VTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHhCCccCc
Confidence            66655566777543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.13  E-value=2.2e-09  Score=111.09  Aligned_cols=169  Identities=15%  Similarity=0.080  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHh-c
Q 008060          286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF-H  364 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~  364 (579)
                      +..+........+.|.++++..+.+....+++.....++.+++.++.|+++||+|||+.+..+..+..++.+++.... +
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~   90 (366)
T TIGR00886        11 FLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS   90 (366)
T ss_pred             HHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344555666777788656555555777888888999999999999999999999999999999988888877766542 1


Q ss_pred             ccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccc
Q 008060          365 ETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREW  444 (579)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (579)
                                                                                                      
T Consensus        91 --------------------------------------------------------------------------------   90 (366)
T TIGR00886        91 --------------------------------------------------------------------------------   90 (366)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 008060          445 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA-------  517 (579)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~-------  517 (579)
                               .+..++..++.+.. . +..+....+++|.+|+++|+.++++......+|..+++.+.+.+.+.       
T Consensus        91 ---------~~~~~~~~~~~g~~-~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  159 (366)
T TIGR00886        91 ---------YSVLLLLRLFIGIA-G-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL  159 (366)
T ss_pred             ---------HHHHHHHHHHHHHh-c-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence                     11222332332222 2 23334457888999999999999999988888888888877776653       


Q ss_pred             ---cccchhh-HHHHHHHHHHHHHhhhhccCC
Q 008060          518 ---IGTSWTF-LIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       518 ---~g~~~~~-~~~~~~~~~~~~~~~~~~~~~  545 (579)
                         .+|++.| +..+++..+..++.+...+|.
T Consensus       160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       160 PAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence               3788888 444555555444444445543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.12  E-value=2e-09  Score=114.04  Aligned_cols=136  Identities=14%  Similarity=0.056  Sum_probs=100.9

Q ss_pred             hhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHH
Q 008060           51 SGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITG  128 (579)
Q Consensus        51 ~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~  128 (579)
                      ...+|.+.++.|.+....   +.+.+.+.++..++.++.|+++||+|||+.+..+.++.++..++....+  +...+.+.
T Consensus       251 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVV---SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGAC  327 (426)
T ss_pred             HHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            345566666677766666   8888899999999999999999999999999888877766655544332  22222222


Q ss_pred             HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                      .+..+.+..+..+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~  388 (426)
T PRK12307        328 LFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGA  388 (426)
T ss_pred             HHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHH
Confidence            2222333333345566788999999999999999999999999999999999988766 544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=4.4e-09  Score=110.27  Aligned_cols=180  Identities=16%  Similarity=0.074  Sum_probs=131.3

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHH
Q 008060           28 YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADF  107 (579)
Q Consensus        28 ~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~  107 (579)
                      .|+...+.+.+......-+...+......+-++-|++.++.   .++.....+...+..+++..+.||+|||+.++.+..
T Consensus       267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a---~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~  343 (485)
T KOG0569|consen  267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEA---QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLS  343 (485)
T ss_pred             hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            34444444444433344444555556667888889988888   777888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc---hhh------HHHHHHHHHHhhchh-hhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH
Q 008060          108 LFFVGAVIMAAAP---NPG------ALITGRVFVGLGVGM-ASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI  177 (579)
Q Consensus       108 l~~i~~ll~~~a~---~~~------~ll~~R~l~Gig~g~-~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l  177 (579)
                      +..+..+++...-   +..      ..+++.++..++.+. .-|...-+.+|.+|++.|+.++++..+...+...+-...
T Consensus       344 ~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~  423 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA  423 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9888888766531   111      123333333333222 357778899999999999999999988888888887777


Q ss_pred             HHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          178 NLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       178 ~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      -..+.+..|+  +.|++..+++++..+. ++.+|||
T Consensus       424 fp~l~~~~g~--~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  424 FPPLQNVIGP--YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHhcc--hhhHHHHHHHHHHHHHHHHhCccc
Confidence            7777777663  7777777777776665 7889999

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.11  E-value=4.3e-09  Score=111.88  Aligned_cols=115  Identities=18%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHhhchhhhhhHhHhhhhc
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA-PNPGALITGRVFVGLGVGMASMTSPLYISEA  150 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a-~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~  150 (579)
                      +++.++..++..++.+++++++||+|+|+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            777788899999999999999999999999999998888887777665 4667777888899999999999999999888


Q ss_pred             CC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          151 SP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       151 ~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      .+       ++++|.++++.+....+|..+++.+.+.+.+..|
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65       4567999999999999999999999999887554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.10  E-value=3.9e-09  Score=113.99  Aligned_cols=160  Identities=13%  Similarity=0.004  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhccc
Q 008060          288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHET  366 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (579)
                      ...+++.+..+++.|+++..+.+...+...............+++|+++|| +|||+.+..+..+..++..++....+  
T Consensus        33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~--  110 (500)
T PRK09584         33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH--  110 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc--
Confidence            344567777888999866555566555555555544445555789999999 59999999999888888766654311  


Q ss_pred             CCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccc
Q 008060          367 TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYT  446 (579)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (579)
                                                                                                      
T Consensus       111 --------------------------------------------------------------------------------  110 (500)
T PRK09584        111 --------------------------------------------------------------------------------  110 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060          447 RGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF--RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF  524 (579)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~  524 (579)
                            ..+...+...+.+.+.+ ...+...++..|.+|++.  |+.+.++.++..++|.+++|.+.|++.+..||++.|
T Consensus       111 ------~~~~l~~~~~l~gig~g-~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F  183 (500)
T PRK09584        111 ------DAGIVYMGMATIAVGNG-LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAF  183 (500)
T ss_pred             ------cHHHHHHHHHHHHHhhh-cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence                  01111222222222222 234455578899997643  456788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008060          525 LIFGVISVAALL  536 (579)
Q Consensus       525 ~~~~~~~~~~~~  536 (579)
                      .+.++..+++.+
T Consensus       184 ~i~~i~~~i~~i  195 (500)
T PRK09584        184 ALSVVGMLITVV  195 (500)
T ss_pred             HHHHHHHHHHHH
Confidence            988765555543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.09  E-value=4.7e-09  Score=112.90  Aligned_cols=160  Identities=16%  Similarity=0.045  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhccc
Q 008060          288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHET  366 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (579)
                      .-.+++.+..+++.|+++..+.+...+.++.........+..+++|+++|| +|||+++..+.++..++.+++...... 
T Consensus        26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-  104 (489)
T PRK10207         26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-  104 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            345677777888888877666566667777666666677778899999999 999999999999999988777653210 


Q ss_pred             CCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccc
Q 008060          367 TSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYT  446 (579)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (579)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (489)
T PRK10207        105 --------------------------------------------------------------------------------  104 (489)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh
Q 008060          447 RGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF  524 (579)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~  524 (579)
                             .....+...+. +.....+.+...+++.|.+|++  .|+.++++.+...++|.+++|.+.|++.++.||++.|
T Consensus       105 -------~~ll~~~~~l~-~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F  176 (489)
T PRK10207        105 -------PDLIFIALGTI-AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTY  176 (489)
T ss_pred             -------hhHHHHHHHHH-HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence                   01111222222 2222333455568899999887  4578899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008060          525 LIFGVISVAALL  536 (579)
Q Consensus       525 ~~~~~~~~~~~~  536 (579)
                      ++.++..+++.+
T Consensus       177 ~i~~i~~~~~~~  188 (489)
T PRK10207        177 NLCGAGLIIALL  188 (489)
T ss_pred             HHHHHHHHHHHH
Confidence            886654444433

>PRK11043 putative transporter; Provisional

Probab=99.08  E-value=7.5e-09  Score=108.81  Aligned_cols=153  Identities=16%  Similarity=-0.043  Sum_probs=110.7

Q ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060          299 SPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET  378 (579)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (579)
                      .|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.++.....+              
T Consensus        29 ~~~i~~~~~~-s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------------   93 (401)
T PRK11043         29 FKAIQADLQT-SASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--------------   93 (401)
T ss_pred             HHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------------
Confidence            3444555555 6677888888889999999999999999999999998888777776665544311              


Q ss_pred             cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060          379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL  458 (579)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (579)
                                                                                                 .+..+
T Consensus        94 ---------------------------------------------------------------------------~~~l~   98 (401)
T PRK11043         94 ---------------------------------------------------------------------------AAQLL   98 (401)
T ss_pred             ---------------------------------------------------------------------------HHHHH
Confidence                                                                                       11122


Q ss_pred             HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHh
Q 008060          459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      +...+.+.+.+ ...+.......|.+|++.++...+..+....++..++|.+.+.+.+..||++.|++.+++.++..+..
T Consensus        99 ~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043         99 VLRFVQAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            22222222111 11233346778899998888899999888899999999999999999999999999888888776665


Q ss_pred             hhhc
Q 008060          539 LIFV  542 (579)
Q Consensus       539 ~~~~  542 (579)
                      +++.
T Consensus       178 ~~~~  181 (401)
T PRK11043        178 LRLK  181 (401)
T ss_pred             HHcC
Confidence            4433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.07  E-value=1.9e-09  Score=115.65  Aligned_cols=148  Identities=15%  Similarity=0.019  Sum_probs=113.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCC
Q 008060          309 ASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPD  388 (579)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (579)
                      .+....+++.....++.+++.+..|+++||+|||+.+..+.++..++.++.......                       
T Consensus        73 ~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----------------------  129 (465)
T TIGR00894        73 WSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-----------------------  129 (465)
T ss_pred             CCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----------------------
Confidence            356667888888899999999999999999999999988887777766554433210                       


Q ss_pred             CccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhh
Q 008060          389 YSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFF  468 (579)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (579)
                                                                                       .+..++..-++.+..
T Consensus       130 -----------------------------------------------------------------~~~~l~~~r~~~G~~  144 (465)
T TIGR00894       130 -----------------------------------------------------------------GIALVVFCRVIQGLA  144 (465)
T ss_pred             -----------------------------------------------------------------CchHHHHHHHHHHHh
Confidence                                                                             111133333334444


Q ss_pred             ccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHHhhhhccC
Q 008060          469 SPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVPE  544 (579)
Q Consensus       469 ~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  544 (579)
                      .....+....++.|.+|++.|+.++|+.+....+|.+++|.+.+.+.+. .||+..|.+.+++.++..++.+.+.++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            4444566678999999999999999999999999999999999999988 499999999998887776665555554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.05  E-value=9.7e-09  Score=107.57  Aligned_cols=149  Identities=16%  Similarity=0.070  Sum_probs=112.8

Q ss_pred             hhhhhhhhcccccchhhHHHHHHHHHH-HHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh------cchhhHH
Q 008060           53 ALLYIRDDFKSVDRKTLLQESIVSMAV-AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA------APNPGAL  125 (579)
Q Consensus        53 ~lp~i~~~~~~s~~~~~~~g~l~s~~~-lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~------a~~~~~l  125 (579)
                      ..+.+.+|.|.+.++.   |++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...+
T Consensus       230 ~~~~~l~~~G~s~~~i---g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWI---GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA  306 (390)
T ss_pred             HhhHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH
Confidence            3445556689888877   88887775 466677899999999999999988877665333332221      2333444


Q ss_pred             HHHHHHHHhhchhhhhhHhHhhhhcCCc-ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          126 ITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~-~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                      .....+.+++.+...+.....+.+..++ +++++.+++.+...++|..+||.++|.+.+..+ |+..|+..+++.++..+
T Consensus       307 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       307 WSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHH
Confidence            5555666777787778888887788776 788999999999999999999999999998877 99999888876666544


Q ss_pred             H
Q 008060          205 L  205 (579)
Q Consensus       205 ~  205 (579)
                      .
T Consensus       386 ~  386 (390)
T TIGR02718       386 L  386 (390)
T ss_pred             H
Confidence            3

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=3.7e-09  Score=114.75  Aligned_cols=137  Identities=23%  Similarity=0.182  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           74 IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNP--GALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        74 l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~--~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      ...+..+...++.++.++++||+|||+.+.++.++.+++.++..+.++.  +..++.-++.+++.+..++....+..|.+
T Consensus       360 ~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       360 DLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3344556677888999999999999999999999999888888776654  45555667777777778888889999999


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESP  213 (579)
Q Consensus       152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp  213 (579)
                      |++.|+.++|+.+....+|.+++|.+.+ +.+.  ++...+.+.+...++..+..+++||+.
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK--WLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH--HHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            9999999999999999999999999998 4333  367788888877777777777888873

>PRK15075 citrate-proton symporter; Provisional

Probab=99.03  E-value=9.5e-09  Score=109.29  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=99.8

Q ss_pred             hhhhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH-HH---Hhcch
Q 008060           47 TGVISGALLYIR-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV-IM---AAAPN  121 (579)
Q Consensus        47 ~~~~~~~lp~i~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l-l~---~~a~~  121 (579)
                      ........|.+. +.+|.+..+.   ++....+.++..++.+++|+++||+|||++++.+..+..+..+ ..   ...++
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADS---LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPS  330 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            334445566654 4478877776   8888888899999999999999999999998776544332221 11   12344


Q ss_pred             hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcCcch
Q 008060          122 PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       122 ~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      +..+.+..++.|++.+...+....++.|.+|+++|+.++++... +..++..++|.+.+++.+..+ ++
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g-~~  398 (434)
T PRK15075        331 FARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG-DK  398 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC-Cc
Confidence            44455556666777776677677889999999999999998544 444557789999999988776 54

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.01  E-value=1.3e-08  Score=102.71  Aligned_cols=167  Identities=16%  Similarity=0.076  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccC
Q 008060          288 QFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETT  367 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (579)
                      .|..+.......+.+-++.+. +..+.+++.....+.+.+.++..|.+.||+|.|++...+.+++.+-.+.+......++
T Consensus        26 ~F~VW~l~s~l~~~i~~~~~L-S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~  104 (417)
T COG2223          26 GFMVWTLFSPLGVFIKSDFGL-SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS  104 (417)
T ss_pred             HHHHHHHHHHHHhhhccccCC-CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            344445554455555555555 6677788888888889999999999999999999999999888888877777654221


Q ss_pred             CCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccccc
Q 008060          368 SHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTR  447 (579)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (579)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (417)
T COG2223         105 --------------------------------------------------------------------------------  104 (417)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhh
Q 008060          448 GCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG---TSWTF  524 (579)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g---~~~~~  524 (579)
                             ...++.+.++.+..+ +........+++.||++.+|.++|+.. .+++|..+...+.+.+....|   |+.+.
T Consensus       105 -------~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~  175 (417)
T COG2223         105 -------TWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVA  175 (417)
T ss_pred             -------hHHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence                   111333333333333 334455689999999999999999999 999999999999999999988   89899


Q ss_pred             HHHHHHHHHHHHHhhhhccC
Q 008060          525 LIFGVISVAALLFVLIFVPE  544 (579)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~  544 (579)
                      .+..+..++..+..++...+
T Consensus       176 ~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         176 GIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            99888888888887776543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.01  E-value=1.5e-08  Score=107.70  Aligned_cols=157  Identities=18%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             hhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHH----hcchhhHH
Q 008060           51 SGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMA----AAPNPGAL  125 (579)
Q Consensus        51 ~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~----~a~~~~~l  125 (579)
                      ...+|. +.+++|.+..+.   +...++..++..+++++.|+++||+|||+++.++.++.++..+...    ..++....
T Consensus       263 ~~~lp~~l~~~~g~s~~~~---~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        263 TTYMQKYLVNTAGMHANVA---SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            344555 456678877666   7888888888889999999999999999988776554433332111    12233322


Q ss_pred             HHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          126 ITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       126 l~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                      +..-.+.+.+.+...+....++.|++|++.|+.++|+.+....+ .....|.+.+.+. ..++|...+++.++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHH
Confidence            22222233333444455667889999999999999997765443 3444777777553 334476677766666666665


Q ss_pred             HHHhccC
Q 008060          205 LMLLLPE  211 (579)
Q Consensus       205 ~~~~lpe  211 (579)
                      ..+++++
T Consensus       419 ~~~~l~~  425 (432)
T PRK10406        419 VSLMLHR  425 (432)
T ss_pred             HHHHhhh
Confidence            5555443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.1e-09  Score=113.80  Aligned_cols=177  Identities=16%  Similarity=0.143  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcccc--chHHHHHHHHH
Q 008060           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFG--RRTSILVADFL  108 (579)
Q Consensus        31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~G--rr~vl~~~~~l  108 (579)
                      +....+++......+...+....+|.+.++.+.+..+.   ..+.++..+...++.++.|+++|+..  ++.+..+++++
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a---a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA---AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLI  374 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh---HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHH
Confidence            34556666677777778888888999999999988888   99999999999999999999999998  45567788888


Q ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060          109 FFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       109 ~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W  188 (579)
                      .+++.+.++++++++.+...-.+.|++.|........++.|....++-..+.|+.....+++..+||++++++.+..++|
T Consensus       375 ~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y  454 (509)
T KOG2504|consen  375 AGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY  454 (509)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence            89999999999999999999999999999988888889999999999999999999999999999999999999998889


Q ss_pred             hhHHHHhhHHHHHHHHHHHhcc
Q 008060          189 RWMLGVAGIPALLQFILMLLLP  210 (579)
Q Consensus       189 r~~f~i~~i~~l~~~i~~~~lp  210 (579)
                      ...|+..++..++....++..+
T Consensus       455 ~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  455 DHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eeehhhcChHHHHHHHHHHHhH
Confidence            9999999998888887777765

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.99  E-value=6e-09  Score=105.08  Aligned_cols=177  Identities=17%  Similarity=0.217  Sum_probs=146.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      ..+++.-..+.++.+. +++.....-.+++|++..+.   .++.....+..+++++++|+|.||+|.|+++..+++++.+
T Consensus       255 ~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l---ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~  330 (438)
T COG2270         255 VLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL---LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSI  330 (438)
T ss_pred             HHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHH
Confidence            3444444445555433 33333334456999998888   7777777778889999999999999999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                      .++..-+...-..+.++-.+.|.+.|..+..+.++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..++-|..
T Consensus       331 ~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g  410 (438)
T COG2270         331 AALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAG  410 (438)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhH
Confidence            88888887777777788899999999999999999999999999999999999999999999999999999998888998


Q ss_pred             HHHhhHHHHHHHHHHHhccCC
Q 008060          192 LGVAGIPALLQFILMLLLPES  212 (579)
Q Consensus       192 f~i~~i~~l~~~i~~~~lpes  212 (579)
                      +....++..+.+++++.+|+.
T Consensus       411 ~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         411 VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhhHhhEEeecCC
Confidence            888887777777777767654

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.99  E-value=3e-08  Score=104.34  Aligned_cols=178  Identities=12%  Similarity=0.028  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHH
Q 008060          281 VGLQVFQQFVGINTVMYYSPTIVQ-LSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVL  359 (579)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  359 (579)
                      ..+.+...|..+.......+.+-+ +.+. +..+.+++.....++..+.++..|+++||+|.|+++..+..+..+..+.+
T Consensus        39 s~~~f~~~F~~w~~~~~l~~~~~~~~~~l-s~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~  117 (462)
T PRK15034         39 SVSCLLLAFCVWMLFSAVTVNLNKIGFNF-TTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWL  117 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555 4444 66677777787888888999999999999999999998888887777766


Q ss_pred             HHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccc
Q 008060          360 SAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHD  439 (579)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (579)
                      .+..++..+                                                                       
T Consensus       118 ~~a~~~~~~-----------------------------------------------------------------------  126 (462)
T PRK15034        118 GIAVQNPNT-----------------------------------------------------------------------  126 (462)
T ss_pred             HHHHcccCC-----------------------------------------------------------------------
Confidence            654221100                                                                       


Q ss_pred             ccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH----
Q 008060          440 ESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT----  515 (579)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~----  515 (579)
                                    ++..++++.++.+..+ +..+.....+++.+|+++||+++|+....+++|..+++.+.+.+.    
T Consensus       127 --------------s~~~lli~r~l~Gigg-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l  191 (462)
T PRK15034        127 --------------PFGIFIVIALLCGFAG-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV  191 (462)
T ss_pred             --------------CHHHHHHHHHHHHHHH-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                          1222333333333322 234455678899999999999999998777788776666555433    


Q ss_pred             -Hh-------------cccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          516 -QA-------------IGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       516 -~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                       +.             .+++.+.++.+++.++..++.+++.++.
T Consensus       192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence             32             2355566677777777776666665543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.99  E-value=1.6e-08  Score=97.41  Aligned_cols=178  Identities=17%  Similarity=0.140  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH
Q 008060           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL  108 (579)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l  108 (579)
                      ||..+......+...+ ....++..-|.+++.+|.+..+.   ..+.+...+|..+ .++.|.+.|++|++.++.+|.+.
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l---~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~   75 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL---NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVL   75 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH---HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHH
Confidence            4666555555554444 55667788899999999999888   8888899999876 58899999999999999999999


Q ss_pred             HHHHHHHHHhc-------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          109 FFVGAVIMAAA-------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       109 ~~i~~ll~~~a-------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      ..+|..+...+       .++|.+.+..++.|.+.+.....+.....+.||. +||.+.|+.-...+++..+-..+...+
T Consensus        76 ~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   76 GFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            99988876542       4678888888888888777767777777788985 699999999999999988777666666


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFILMLLLPESP  213 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp  213 (579)
                      ..... -+..+.....+.++.++...+++..|
T Consensus       155 f~~~~-~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  155 FGDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             cCCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence            55422 44444444445555555555665443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.98  E-value=2.4e-08  Score=105.02  Aligned_cols=147  Identities=16%  Similarity=0.134  Sum_probs=106.3

Q ss_pred             hhhhhhcccccchhhHHHHHHHHH-HHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH---Hhc-chhhHHHHHH
Q 008060           55 LYIRDDFKSVDRKTLLQESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM---AAA-PNPGALITGR  129 (579)
Q Consensus        55 p~i~~~~~~s~~~~~~~g~l~s~~-~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~---~~a-~~~~~ll~~R  129 (579)
                      +.+.+++|.+..+.   +++.+.. .++..++.+++|++.||+|||+.+..+..+..+..+..   ++. ++.+.+++.-
T Consensus       234 ~~l~~~~G~~~~~~---g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  310 (402)
T PRK11902        234 TFLIRGAGFSAGEV---GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAI  310 (402)
T ss_pred             HHHHHhcCCCHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            45667788887777   8877654 45688999999999999999998877776665554333   344 4556555544


Q ss_pred             ----HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          130 ----VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       130 ----~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                          +..|++.+...+....++.+.+|.+++    ++++...++|..+++.++|.+.+..| |+..|.+.++++++..++
T Consensus       311 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        311 GIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHH
Confidence                345566666677777778888776544    45555667788777778999999888 999999999888777666


Q ss_pred             HHhc
Q 008060          206 MLLL  209 (579)
Q Consensus       206 ~~~l  209 (579)
                      .+..
T Consensus       386 ~~~~  389 (402)
T PRK11902        386 LWLM  389 (402)
T ss_pred             HHHH
Confidence            5443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.97  E-value=3.9e-09  Score=92.48  Aligned_cols=135  Identities=23%  Similarity=0.207  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccc
Q 008060          321 TSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDC  400 (579)
Q Consensus       321 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (579)
                      ..++.+++.++.+++.||++||+.+..+.....++.+.+....+                                    
T Consensus         7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------   50 (141)
T TIGR00880         7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------------------------------------   50 (141)
T ss_pred             ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence            45667888999999999999999988887777766665543211                                    


Q ss_pred             cccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceee
Q 008060          401 MKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVN  480 (579)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (579)
                                                                           .+...+...+.....+ ...+....+.
T Consensus        51 -----------------------------------------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~   76 (141)
T TIGR00880        51 -----------------------------------------------------ITVLIIARFLQGFGAA-FALVAGAALI   76 (141)
T ss_pred             -----------------------------------------------------HHHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence                                                                 1222222223322222 2345566788


Q ss_pred             ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          481 SEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       481 ~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      .|.+|++.|++.+++.+....+|..++|.+.+.+.+..+|++.+.+.+++.++..+..+++.||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999999999999988999999999888888877776666653

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=8.1e-09  Score=106.67  Aligned_cols=137  Identities=20%  Similarity=0.134  Sum_probs=108.3

Q ss_pred             hhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Q 008060           50 ISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPNPGALITG  128 (579)
Q Consensus        50 ~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~  128 (579)
                      ....+|.+.++.|.+..+.   +.+.+...++..+++++.|+++||+ +||+.+..+..+.+++.++..+..+..... .
T Consensus       216 ~~~~lp~~~~~~g~~~~~~---g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  291 (355)
T TIGR00896       216 LIGWLPAILISHGASAATA---GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-W  291 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence            3345676667778877776   9999999999999999999999999 567777788888888777777665433332 4


Q ss_pred             HHHHHhhchhhhhhHhHhhhhcCC-cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          129 RVFVGLGVGMASMTSPLYISEASP-AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       129 R~l~Gig~g~~~~~~~~~l~e~~p-~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                      -++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+++.+..++|.+
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            567899999999888777776554 56678889998888899999999999999988776654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.96  E-value=2.8e-08  Score=104.67  Aligned_cols=158  Identities=16%  Similarity=0.052  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCc
Q 008060          293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPM  372 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (579)
                      .......|.+.++.+. +..+.+++.....++.+++++..|++.||+|||+++..+..+.+++.+++......+      
T Consensus        20 ~~~~~l~~~~~~~~~~-s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~------   92 (410)
T TIGR00885        20 DITNPMVPQFQQAFTL-TAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM------   92 (410)
T ss_pred             HhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc------
Confidence            3444566777666555 667788898999999999999999999999999999999999888877754432110      


Q ss_pred             cccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCC
Q 008060          373 VSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSK  452 (579)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (579)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (410)
T TIGR00885        93 --------------------------------------------------------------------------------   92 (410)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 008060          453 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA---------------  517 (579)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~---------------  517 (579)
                      ..+..++..++.+.+.+. ..+....++.+..|++.|+...++.+....+|..++|.+.+.+...               
T Consensus        93 ~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~  171 (410)
T TIGR00885        93 NYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSP  171 (410)
T ss_pred             cHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCH
Confidence            011222222222222222 2334446777888999999999999999999999999998877532               


Q ss_pred             -----------cccchhhHHHHHHHHHHHHHh
Q 008060          518 -----------IGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       518 -----------~g~~~~~~~~~~~~~~~~~~~  538 (579)
                                 .+|+++|++.+++.++..++.
T Consensus       172 ~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       172 EELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       358889988888777665544

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.95  E-value=1.3e-08  Score=121.79  Aligned_cols=144  Identities=15%  Similarity=0.241  Sum_probs=121.6

Q ss_pred             hhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 008060           55 LYIRDDFKSVDR-KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVG  133 (579)
Q Consensus        55 p~i~~~~~~s~~-~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~G  133 (579)
                      +.+.+++|.+.. ..   +++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.+++..++.|
T Consensus       257 ~~~~~~~g~s~~~~~---g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  333 (1146)
T PRK08633        257 AYAKEVLGLDNTFQV---QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFG  333 (1146)
T ss_pred             HHHHHHhCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            345677888776 66   99999999999999999999999999999999998888888888888889998989999999


Q ss_pred             hhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHH
Q 008060          134 LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (579)
Q Consensus       134 ig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~  201 (579)
                      ++.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+.....++...|++.+.+.++
T Consensus       334 ~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        334 FSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888888877654321366666665554433

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.95  E-value=1.9e-08  Score=104.91  Aligned_cols=170  Identities=18%  Similarity=0.212  Sum_probs=130.9

Q ss_pred             HHHhhhhhhhhhhhhhhhhhhcc-cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           40 GLLFGYDTGVISGALLYIRDDFK-SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~~~-~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      .++.+.....+....+...++.| .+....   +.+.++..+.-.+.-...+++..|+|.|++++++.+.+++=..+.+.
T Consensus       216 ~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~---g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  216 AFLIGISHAAYYTFFSIYLQELGGYSGSTI---GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666677777 455555   77778888888888999999999999999999999999998888888


Q ss_pred             c-chhhHHHHH----HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcC-----c
Q 008060          119 A-PNPGALITG----RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPG-----T  187 (579)
Q Consensus       119 a-~~~~~ll~~----R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~-----~  187 (579)
                      . ++.+...+.    ..+.|+..+..+.....++.+..|++.|+++.+++.. ..++|..+|..++|++.+..+     .
T Consensus       293 ~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~  372 (400)
T PF03825_consen  293 FSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFD  372 (400)
T ss_pred             hcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence            7 555444333    4569999999999999999999999999999999876 478999999999999998765     2


Q ss_pred             chhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          188 WRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       188 Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      |...+.+.+.+.++..++ +.+++|+
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            555666666655555555 4445543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.95  E-value=3.4e-08  Score=99.87  Aligned_cols=130  Identities=13%  Similarity=0.041  Sum_probs=105.8

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhh
Q 008060           61 FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMAS  140 (579)
Q Consensus        61 ~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~  140 (579)
                      +|.+..+.   ++..+.+..+..++.++.+++.||+|+|+++.++..+..++.++....++... ...-++.|++.+..+
T Consensus       173 ~g~s~~~a---~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~  248 (310)
T TIGR01272       173 LGLPEDQA---AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMF  248 (310)
T ss_pred             CCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHH
Confidence            68887777   99999999999999999999999999999998888888877766666554433 345568899999999


Q ss_pred             hhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhH
Q 008060          141 MTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGI  197 (579)
Q Consensus       141 ~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i  197 (579)
                      |...+...+.+|++ .+.+.++. ....+|.++.|.+.|.+.|..+ .+..|++..+
T Consensus       249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v~~~  302 (310)
T TIGR01272       249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQLAFALPVP  302 (310)
T ss_pred             HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chHHHHHHHH
Confidence            99999998988865 45666665 5667899999999999999777 7888774443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.94  E-value=7.1e-10  Score=112.61  Aligned_cols=160  Identities=18%  Similarity=0.084  Sum_probs=128.7

Q ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCC
Q 008060          305 LSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNL  384 (579)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (579)
                      +..+.+....+++.....++..++++++|++.||++||+++.+|..+..++.+.-.+..+                    
T Consensus        61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~--------------------  120 (493)
T KOG1330|consen   61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNH--------------------  120 (493)
T ss_pred             HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHH--------------------
Confidence            344456677789999999999999999999999999999999999999888887776633                    


Q ss_pred             CCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHH
Q 008060          385 TCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALY  464 (579)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (579)
                                                                                           -|..++.- .+
T Consensus       121 ---------------------------------------------------------------------Fwq~~l~R-~~  130 (493)
T KOG1330|consen  121 ---------------------------------------------------------------------FWQVLLCR-GF  130 (493)
T ss_pred             ---------------------------------------------------------------------HHHHHHHH-HH
Confidence                                                                                 23223322 23


Q ss_pred             HHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHHhhhhcc
Q 008060          465 IIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      .+..-....|+..++++|.+|...|+.++++.+++..+|..+|-+..+.+.+..+ |+++|...+++.++.+++..++.+
T Consensus       131 vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  131 VGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             hccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            3333334567888999999999999999999999999999999888888877777 999999999999999999888888


Q ss_pred             CCCCCChHHHH
Q 008060          544 ETKGLPIEEIE  554 (579)
Q Consensus       544 ~~~~~~~~~~~  554 (579)
                      |.+++..++.+
T Consensus       211 eP~rga~~~~~  221 (493)
T KOG1330|consen  211 EPERGARDEVD  221 (493)
T ss_pred             Ccccccccccc
Confidence            88765544443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.93  E-value=3.1e-08  Score=101.94  Aligned_cols=143  Identities=14%  Similarity=0.169  Sum_probs=123.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhh
Q 008060           69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYIS  148 (579)
Q Consensus        69 ~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~  148 (579)
                      ...|.+.++..+.-++...+..++.+|+|.|+.++++..+.++=.++++++++.+.+.+.+.+.|+-.+........|++
T Consensus       259 ~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~  338 (412)
T PF01306_consen  259 QMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYIT  338 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCcccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          149 EASPAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       149 e~~p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      +.+|++..++...+ .+.+.++|.++.+.++|.+.|..| .+..|++.+.+.++..++ .+.++++
T Consensus       339 ~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  339 AHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            99999887777777 478889999999999999999987 999999888877666665 5666554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.93  E-value=7.1e-09  Score=106.93  Aligned_cols=181  Identities=14%  Similarity=0.102  Sum_probs=127.6

Q ss_pred             hHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 008060          263 NLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK  342 (579)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  342 (579)
                      ...+++.++......+..     +....+...+.+++--++++.+.. ...-+.....-..+.++.-++.+++.+|+|+-
T Consensus       363 ~~~~~~~s~~~llff~~a-----v~mG~g~~lv~tFLfWHled~~~~-~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv  436 (618)
T KOG3762|consen  363 DVGKVFASPHILLFFFVA-----VVMGAGVGLVFTFLFWHLEDLGGI-KTLFGVVSALCHAGEILFYFFSFKLIEKIGHV  436 (618)
T ss_pred             HHHHHhcCCCEEehhHHH-----HHHHHHHHHHHHHHHHHHhhcCCc-ceeeeehhhhhccchHHHHHHHHHHHHHhccc
Confidence            334666766654322222     223334556666665667777653 34445667777778899999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCC
Q 008060          343 KLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLF  422 (579)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (579)
                      +++.+++.+.++-++.+....+                                                          
T Consensus       437 ~v~~lgLa~~~~Rf~~~S~L~n----------------------------------------------------------  458 (618)
T KOG3762|consen  437 NVMYLGLACNVGRFLYYSYLQN----------------------------------------------------------  458 (618)
T ss_pred             ceeeehhhHHHHHHHHHHHhcC----------------------------------------------------------
Confidence            9999998888877776665432                                                          


Q ss_pred             CccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHH-HH
Q 008060          423 PGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATA-NW  501 (579)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~-~~  501 (579)
                                                     .|..+.+=.+-.+.....+ ....++++...|++.+.++.|+.... ..
T Consensus       459 -------------------------------~W~vLPieilqgit~aliW-aa~~sY~s~vaPp~l~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  459 -------------------------------PWMVLPIEILQGITHALIW-AAIISYASHVAPPGLRATAQGLLQGIFHG  506 (618)
T ss_pred             -------------------------------chheeeHHHHHHHHHHHHH-HHHHHHHHhhCCCcchHHHHHHHHHHhcc
Confidence                                           3444444334344433332 33347889999999999999998554 56


Q ss_pred             HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhh
Q 008060          502 ISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVL  539 (579)
Q Consensus       502 ~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  539 (579)
                      +|..+|+++.|.+.+.+|.+..|.++++.+++.+++..
T Consensus       507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999998888776643

>TIGR00901 2A0125 AmpG-related permease

Probab=98.91  E-value=3.3e-08  Score=102.06  Aligned_cols=75  Identities=17%  Similarity=0.086  Sum_probs=63.2

Q ss_pred             ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--------cchhhHHHHHHHHHHHHHhhhhccC
Q 008060          473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--------TSWTFLIFGVISVAALLFVLIFVPE  544 (579)
Q Consensus       473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~  544 (579)
                      .+...+++.|.+|+++|+.+.|+......+|.++++.+.+.+.+..|        |+..|++.+++.++..++.++..||
T Consensus       101 ~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e  180 (356)
T TIGR00901       101 DIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKE  180 (356)
T ss_pred             HHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccC
Confidence            45556789999999999999999999999999999999999988888        9999999998888776665555677


Q ss_pred             CCC
Q 008060          545 TKG  547 (579)
Q Consensus       545 ~~~  547 (579)
                      .++
T Consensus       181 ~~~  183 (356)
T TIGR00901       181 PQE  183 (356)
T ss_pred             CCc
Confidence            543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2.3e-08  Score=101.39  Aligned_cols=146  Identities=13%  Similarity=0.160  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc----cccchHHHHH-HHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND----RFGRRTSILV-ADF  107 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD----r~Grr~vl~~-~~~  107 (579)
                      ++.++...+...+....--..++++..++|+...-.   +.+--...+...+.+++.|..+|    ||||||.++. +.+
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~---S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWS---SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccc---cccccccccccceecccccccccccccccccccchHHHhhH
Confidence            333333334444444444456677888889877766   77777777778888999999999    5899887765 555


Q ss_pred             HHHHHHHHHHhcchh-----------------hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchh-hhhhhHHHHHH
Q 008060          108 LFFVGAVIMAAAPNP-----------------GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGA-LVSTNGFLITS  169 (579)
Q Consensus       108 l~~i~~ll~~~a~~~-----------------~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~-~~~~~~~~~~i  169 (579)
                      ..+++.++.+++.++                 ..+++..-+.=++.......+.+++.|...++++.+ +.+++....++
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~av  190 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAV  190 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHh
Confidence            666777777765432                 334444555556677788889999999998777766 99999999999


Q ss_pred             HHHHHHHHHHHh
Q 008060          170 GQFLSYLINLAF  181 (579)
Q Consensus       170 G~~ig~~l~~~l  181 (579)
                      |..+|..++++.
T Consensus       191 GnvLGY~~g~y~  202 (498)
T KOG0637|consen  191 GNVLGYALGSYL  202 (498)
T ss_pred             cceeeeeccccc
Confidence            999999988744

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.90  E-value=7.8e-09  Score=102.35  Aligned_cols=147  Identities=24%  Similarity=0.122  Sum_probs=106.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060          310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (579)
                      ....++++...+.+..++.+...|.++||+|||.+++++.+..++...+.....+                         
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-------------------------  120 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-------------------------  120 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            4567889999999999999999999999999999999999999887777666432                         


Q ss_pred             ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060          390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS  469 (579)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (579)
                                                                                       ...++..=+.++ ..
T Consensus       121 -----------------------------------------------------------------F~afv~aR~l~G-i~  134 (451)
T KOG2615|consen  121 -----------------------------------------------------------------FAAFVLARFLGG-IF  134 (451)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHhhh-hc
Confidence                                                                             111222122333 33


Q ss_pred             cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---hcccchhhH-HHHHHHHHH--HHHhhhhcc
Q 008060          470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ---AIGTSWTFL-IFGVISVAA--LLFVLIFVP  543 (579)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~---~~g~~~~~~-~~~~~~~~~--~~~~~~~~~  543 (579)
                      -+...+..++++|++++++|+.+++.++++..+|.++||.+.|++.+   ..|-++.++ .+.++.+..  .....+++|
T Consensus       135 kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lp  214 (451)
T KOG2615|consen  135 KGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLP  214 (451)
T ss_pred             cCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34445667999999999999999999999999999999999999987   445333222 222222222  233345688


Q ss_pred             CCCC
Q 008060          544 ETKG  547 (579)
Q Consensus       544 ~~~~  547 (579)
                      ||-.
T Consensus       215 ETL~  218 (451)
T KOG2615|consen  215 ETLP  218 (451)
T ss_pred             cccc
Confidence            8843

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.88  E-value=3.3e-08  Score=118.07  Aligned_cols=146  Identities=9%  Similarity=0.078  Sum_probs=118.3

Q ss_pred             hhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc------------
Q 008060           53 ALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA------------  119 (579)
Q Consensus        53 ~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a------------  119 (579)
                      .+|. +.+.+|.+....   |++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++.            
T Consensus       247 ~~p~~~~~~~g~~~~~~---g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  323 (1140)
T PRK06814        247 QLPLLAKETLGGDENVA---TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLK  323 (1140)
T ss_pred             HhHHHHHHHcCCchHHH---HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccccc
Confidence            4454 455678877777   999999999999999999999999888777666666666655544443            


Q ss_pred             --------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhH
Q 008060          120 --------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWM  191 (579)
Q Consensus       120 --------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~  191 (579)
                              .+.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.++...+|..+++++.+.+.+...+....
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~  403 (1140)
T PRK06814        324 SILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWI  403 (1140)
T ss_pred             chhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    677888888999999999999999999999999999999999999999999999999999887543346777


Q ss_pred             HHHhhHHHHH
Q 008060          192 LGVAGIPALL  201 (579)
Q Consensus       192 f~i~~i~~l~  201 (579)
                      +++.+++.++
T Consensus       404 ~~~~~~~~~~  413 (1140)
T PRK06814        404 ILFIALANLI  413 (1140)
T ss_pred             HHHHHHHHHH
Confidence            6665554333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.83  E-value=1.7e-07  Score=98.30  Aligned_cols=143  Identities=10%  Similarity=0.065  Sum_probs=111.2

Q ss_pred             hhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Q 008060           56 YIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLG  135 (579)
Q Consensus        56 ~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig  135 (579)
                      .+.+.+|.+..+.   |++.+.+.++..+++++.+++.||+++|+++..+. +.++..++.++.++++..++..++.|++
T Consensus       231 ~~~~~lg~s~~~~---G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~  306 (393)
T PRK11195        231 WAPVALGITLNQP---AYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGAL  306 (393)
T ss_pred             HHHHHcCCChhHH---HHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            3556688887777   99999999999999999999999999999888775 4455555566677888778888899999


Q ss_pred             chhhhhhHhHhhhhcCCccc-chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          136 VGMASMTSPLYISEASPAKI-RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       136 ~g~~~~~~~~~l~e~~p~~~-R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                      .+...+...+.+.+..|++. +|++.++.+....+|..++..+.+.+... + -|..+.+.+...++.+.
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  374 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL-G-VPVVAVIVGFGLLVALA  374 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc-C-CCHHHHHHHHHHHHHHH
Confidence            99888888888888766654 79999999999999999999999876443 3 45544444433333333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.83  E-value=1.2e-06  Score=96.47  Aligned_cols=153  Identities=17%  Similarity=0.275  Sum_probs=120.6

Q ss_pred             hhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcch--------h
Q 008060           52 GALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPN--------P  122 (579)
Q Consensus        52 ~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~~--------~  122 (579)
                      .+..++.+.+|.++...   ..+...+....-+..+++|.++|++ ||++.+.++.++..+|.++.+++..        .
T Consensus         9 iLvlYl~~~lg~~~~~A---~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~   85 (654)
T TIGR00926         9 ILVLYFLNFLGFSESTS---TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHD   85 (654)
T ss_pred             HHHHHHHHHcCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHH
Confidence            34445666788877777   6677777777778899999999965 9999999999999999988876421        2


Q ss_pred             hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc---cchhhhhhhHHHHHHHHHHHHHHHHHhccCc------CcchhHHH
Q 008060          123 GALITGRVFVGLGVGMASMTSPLYISEASPAK---IRGALVSTNGFLITSGQFLSYLINLAFTRAP------GTWRWMLG  193 (579)
Q Consensus       123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~---~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~------~~Wr~~f~  193 (579)
                      ...+++-.+..+|.|++-|...+...|.++++   +|...+.++..+.++|+.+++++.+++.+..      .+|...|.
T Consensus        86 ~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~  165 (654)
T TIGR00926        86 LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFG  165 (654)
T ss_pred             HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHH
Confidence            34667778888999999999999999999754   3677888899999999999999998887432      14999999


Q ss_pred             HhhHHHHHHHHHHH
Q 008060          194 VAGIPALLQFILML  207 (579)
Q Consensus       194 i~~i~~l~~~i~~~  207 (579)
                      +.++..++.+++..
T Consensus       166 i~~i~m~ia~lvf~  179 (654)
T TIGR00926       166 VPAILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88887776666543

>PRK09848 glucuronide transporter; Provisional

Probab=98.82  E-value=2e-07  Score=99.62  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=101.6

Q ss_pred             hhhhh-hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHH
Q 008060           53 ALLYI-RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGR  129 (579)
Q Consensus        53 ~lp~i-~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R  129 (579)
                      ..|.+ .+.+|.+....   ++......++..++.+++++++||+|+|+++.++.++.+++.++..+.+  +++.+++..
T Consensus       250 ~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~  326 (448)
T PRK09848        250 SSLFYVRYVLNDTGLFT---VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVAL  326 (448)
T ss_pred             hheeeEeeecCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHH
Confidence            34443 34456543332   4444445677888999999999999999999999988888877776654  677777788


Q ss_pred             HHHHhhchhhhhhHhHhhhhcCCcc-------cchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          130 VFVGLGVGMASMTSPLYISEASPAK-------IRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       130 ~l~Gig~g~~~~~~~~~l~e~~p~~-------~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      ++.|+|.+...+...++.+|..+.+       ++|...++++....+|..+|+.+.+.+.+..
T Consensus       327 ~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~  389 (448)
T PRK09848        327 AIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS  389 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8999999999999999998888754       3588999999999999999999998876543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.82  E-value=2.8e-08  Score=106.94  Aligned_cols=153  Identities=21%  Similarity=0.192  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCcccc
Q 008060          296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSA  375 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (579)
                      ...++.+.++.|..  ....++.....+...++.++.|+++|.+|||..++.+.++..++.++.....+..         
T Consensus        64 a~~l~~I~~diG~~--~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~---------  132 (599)
T PF06609_consen   64 ASILPYINADIGGS--DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN---------  132 (599)
T ss_pred             HHHHHHHHHhcCCC--ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH---------
Confidence            33456666677664  3345677778888999999999999999999999999999999888776543211         


Q ss_pred             ccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcch
Q 008060          376 VETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGW  455 (579)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (579)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (599)
T PF06609_consen  133 --------------------------------------------------------------------------------  132 (599)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 008060          456 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAAL  535 (579)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~  535 (579)
                      ..+.+..+++.+  .|........++|+.|.+.|+...++.....-....++|.+...+..+.+|+|.|++.+++..+++
T Consensus       133 ~~iag~~l~Gvg--aG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  133 TFIAGMVLYGVG--AGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             HHHHHHHHHHHh--hHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            113334444333  333334456689999999998888777655444455666666666666789999999999888777


Q ss_pred             HHhhhh
Q 008060          536 LFVLIF  541 (579)
Q Consensus       536 ~~~~~~  541 (579)
                      +...++
T Consensus       211 vl~~~f  216 (599)
T PF06609_consen  211 VLIFFF  216 (599)
T ss_pred             HHHHHH
Confidence            665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.81  E-value=1.4e-07  Score=93.75  Aligned_cols=159  Identities=29%  Similarity=0.391  Sum_probs=126.6

Q ss_pred             HHhhhhhhhhhhhhhhhhhhcccccc--hhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           41 LLFGYDTGVISGALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        41 ~~~~~~~~~~~~~lp~i~~~~~~s~~--~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      +....+........+.+..+++.+..  ..   ++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~   88 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY---GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLAL   88 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHH---HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHh
Confidence            33336666667777777777766552  45   89999999999999999999999999998888888766666677777


Q ss_pred             cch--hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc-ccchhhhhhhHH-HHHHHHHHHHHHHHHhccC-cCcchhHHH
Q 008060          119 APN--PGALITGRVFVGLGVGMASMTSPLYISEASPA-KIRGALVSTNGF-LITSGQFLSYLINLAFTRA-PGTWRWMLG  193 (579)
Q Consensus       119 a~~--~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~-~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~-~~~Wr~~f~  193 (579)
                      ..+  .+.+++.|+++|++.+...+...+++.|++|+ ++|+...+.... ...+|..+++.+++.+... ..+||+.|.
T Consensus        89 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (338)
T COG0477          89 APNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL  168 (338)
T ss_pred             CccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            766  99999999999999999999999999999998 678999998888 5888888888887776654 124999666


Q ss_pred             HhhHHHHHH
Q 008060          194 VAGIPALLQ  202 (579)
Q Consensus       194 i~~i~~l~~  202 (579)
                      .........
T Consensus       169 ~~~~~~~~~  177 (338)
T COG0477         169 LAALLGLLL  177 (338)
T ss_pred             HHHHHHHHH
Confidence            666554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.81  E-value=4e-08  Score=108.88  Aligned_cols=226  Identities=15%  Similarity=0.027  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060          279 AGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV  358 (579)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  358 (579)
                      +...+..+.+..........++.+-++.+. +..+.+++.....++.+++.++.+++.||.+||+++.++.++++++.++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~l-ss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKL-STSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCC-CCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            333333444443333444445555555555 5566788888899999999999999999999999999999999999888


Q ss_pred             HHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccc
Q 008060          359 LSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCH  438 (579)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (579)
                      +............          +.   .+.+      .      ....+.+-..|........      +.+..+..|.
T Consensus       115 ~alphf~~~~y~~----------~~---~~~~------~------~~~~~~~~~~c~~~~~~~~------~~~~~~~~~~  163 (633)
T TIGR00805       115 LSLPHFLSGRYSY----------ST---TVSS------T------GNLSSANSFLCMENLTQAL------RPTQCPSECQ  163 (633)
T ss_pred             HhChHHhcCCccc----------cc---cccc------c------ccccccccccccCCCCCCc------cccccccccc
Confidence            7665321110000          00   0000      0      0000000111210000000      0011112333


Q ss_pred             cccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060          439 DESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~  518 (579)
                      +++..        ...+..+++.-++.+.......+...+++.|.+|++.|+...|+.+....+|.++++.+.+.+.+..
T Consensus       164 ~~~~~--------~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       164 KQHKE--------SLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             cccCC--------CceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            32211        1123334344444444444456677899999999999999999999999999999999999887542


Q ss_pred             ----------------------ccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          519 ----------------------GTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       519 ----------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                                            +|+..|++.+++.++..+.. +++|++
T Consensus       236 ~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~  283 (633)
T TIGR00805       236 VDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKA  283 (633)
T ss_pred             cccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccc
Confidence                                  15566888887777766554 445544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09669 putative symporter YagG; Provisional

Probab=98.77  E-value=4e-07  Score=97.14  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh--cchhhHHHHHHHHHHhhchhhhhhHhHhhhh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA--APNPGALITGRVFVGLGVGMASMTSPLYISE  149 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~--a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e  149 (579)
                      +.+.....+...++.+++++++||+|+|+.+..+.++.+++.+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55666777888889999999999999999998887766654433222  3577778888899999999999999999998


Q ss_pred             cCCc-------ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          150 ASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       150 ~~p~-------~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ..+.       ++.|..++.......+|..+|+.+++.+.+..|
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8752       223667788888999999999999998877554

>PRK10133 L-fucose transporter; Provisional

Probab=98.77  E-value=2.9e-07  Score=97.94  Aligned_cols=139  Identities=10%  Similarity=-0.050  Sum_probs=109.8

Q ss_pred             hhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhch
Q 008060           58 RDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVG  137 (579)
Q Consensus        58 ~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g  137 (579)
                      ++.+|.++.+.   ++....+.++..++.++.|++.||+|||+++..+.++..++.++..+.++.+ .+..-.+.|++.+
T Consensus       287 ~~~~g~s~~~a---g~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~  362 (438)
T PRK10133        287 EEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMS  362 (438)
T ss_pred             hhcCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHH
Confidence            45688888888   9999999999999999999999999999999988888777777666666543 3456678999999


Q ss_pred             hhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHH
Q 008060          138 MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQ  202 (579)
Q Consensus       138 ~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~  202 (579)
                      ..+|...+...+.++++ .+.+.++..+ ..+|..++|.+.+.+.+..++-|..|++..+..+..
T Consensus       363 ~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        363 IQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            99999999999998764 5677777764 446788888888888886543577776555443333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.75  E-value=2.2e-05  Score=81.98  Aligned_cols=314  Identities=11%  Similarity=-0.007  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      ...++.++++...+.-+.....+.+..+..-+  +....+...-.-.+...+.++..|.+.||..|.+++..+++..-++
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~--sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~s   81 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG--SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLS   81 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHH
Confidence            34456666776666666777777665554211  2211133344445556677888999999999999988776655443


Q ss_pred             HHHHH------hc--c----hhhHHHHHH---HHHHhhchhhhh-hHhHhhhhcC------CcccchhhhhhhHHHHHHH
Q 008060          113 AVIMA------AA--P----NPGALITGR---VFVGLGVGMASM-TSPLYISEAS------PAKIRGALVSTNGFLITSG  170 (579)
Q Consensus       113 ~ll~~------~a--~----~~~~ll~~R---~l~Gig~g~~~~-~~~~~l~e~~------p~~~R~~~~~~~~~~~~iG  170 (579)
                      ..+.+      +.  .    +-+......   .+.|.-.-.... ...++=.||.      +++.+.+..+...-.--+.
T Consensus        82 v~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~c  161 (432)
T PF06963_consen   82 VAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFC  161 (432)
T ss_pred             HHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHH
Confidence            33222      11  1    112222222   222221111111 1112224443      2334456666666666778


Q ss_pred             HHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhc----cCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHh
Q 008060          171 QFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLL----PESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDL  245 (579)
Q Consensus       171 ~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~l----pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (579)
                      .+++|++.|.+....+ .+....+.+...++..+. ++++    ...|. +..+.+.++.+...... .. .........
T Consensus       162 kllaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~-~~~~~~~~~  237 (432)
T PF06963_consen  162 KLLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SS-SESSSDPSI  237 (432)
T ss_pred             HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-cc-ccccchhhH
Confidence            9999999999988766 777777777777777665 4333    22232 22221111100000000 00 000000000


Q ss_pred             hhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Q 008060          246 KESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLN  325 (579)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (579)
                      .    +...+.-+.....++.-++.+.+....-..++..      ..-.+-..+..|+...|. +....+..-....+.+
T Consensus       238 ~----~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~------TVLsf~~lmt~yl~~~G~-s~~~igi~R~~gav~G  306 (432)
T PF06963_consen  238 L----KRLWNPLRTIIRGWRTYFRQPVFLASFALALLYF------TVLSFGGLMTAYLKSQGY-SPSVIGIFRGLGAVFG  306 (432)
T ss_pred             H----HHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHH------HHhcCcHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            0    0000000111233444555554433222221111      112223345567777766 5566677777788889


Q ss_pred             HHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHh
Q 008060          326 AAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVF  363 (579)
Q Consensus       326 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (579)
                      +.|+++..++.+|+|..+.-..+......++.+.....
T Consensus       307 l~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~  344 (432)
T PF06963_consen  307 LLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSF  344 (432)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988887777776665555544443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.75  E-value=9.2e-08  Score=101.55  Aligned_cols=143  Identities=17%  Similarity=0.223  Sum_probs=116.0

Q ss_pred             HHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           40 GLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      .++............+++.++ ++.+ +..   +.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++..+
T Consensus       234 ~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~---~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  234 FFLQWLAFALMNTFLPYYFTYVLGNE-GLI---SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHhcCc-hhh---HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            334444444555555555544 4443 334   77888999999999999999999999999999999999999999888


Q ss_pred             cc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc-------ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          119 AP--NPGALITGRVFVGLGVGMASMTSPLYISEASPA-------KIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       119 a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~-------~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      .+  |.+.+++.-++.|++.+...+...++++|..+.       ++.|..++++....-+|..+++.+.+.+.+..|
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence            76  999999999999999999999999999998873       334888899999999999999998888765443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=1.4e-08  Score=101.26  Aligned_cols=150  Identities=20%  Similarity=0.083  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060          310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (579)
                      .+.+.+++....++..++.+++.|.+.||+|+|-.+++|+..+..+-+++.+...                         
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s-------------------------  158 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS-------------------------  158 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch-------------------------
Confidence            4566788888899999999999999999999999999999999999888877532                         


Q ss_pred             ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060          390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS  469 (579)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (579)
                                                                                       +.+++..=..-+..+
T Consensus       159 -----------------------------------------------------------------y~~l~vAR~LQgvgs  173 (464)
T KOG3764|consen  159 -----------------------------------------------------------------YPMLFVARSLQGVGS  173 (464)
T ss_pred             -----------------------------------------------------------------hHHHHHHHHHhhhhH
Confidence                                                                             122333333333333


Q ss_pred             cCcccccceeecccccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          470 PGMGTAPWIVNSEIYPLRF-RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~-~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      ....+...+++++.+|.+. |+.++|+.-.+..+|-.++|.+.|.++|..|++.+|++.++++++...+-++.++.++.+
T Consensus       174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            3334455688899998765 699999999999999999999999999999999999999999999988877777766655


Q ss_pred             C
Q 008060          549 P  549 (579)
Q Consensus       549 ~  549 (579)
                      +
T Consensus       254 ~  254 (464)
T KOG3764|consen  254 P  254 (464)
T ss_pred             c
Confidence            4

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.74  E-value=2.3e-07  Score=99.88  Aligned_cols=115  Identities=10%  Similarity=0.123  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITGRVFVGLGVGMASMTSPLY  146 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~-----a~~~~~ll~~R~l~Gig~g~~~~~~~~~  146 (579)
                      +++.++..++..++.+++++++||+|+|+.++++..+..++.+...+     ..+.+.+++.-++.|++.+...+...++
T Consensus       269 ~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am  348 (473)
T PRK10429        269 PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIM  348 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777777888999999999999999999998888776666555432     3456777777788999999999999999


Q ss_pred             hhhcCC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          147 ISEASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       147 l~e~~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      ++|..+       .++.|..++......-+|..+++.+.+++.+..|
T Consensus       349 ~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        349 VADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999865       2333668888999999999999999998876443

>PTZ00207 hypothetical protein; Provisional

Probab=98.73  E-value=3.4e-07  Score=99.18  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 008060          292 INTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSP  371 (579)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (579)
                      .+.+..+.|.+.++.+.+ ..+.+.+...... .....+.+|++.||+|+|+++.++.++..++.++........-.   
T Consensus        43 ~y~fsv~s~~L~~~lgls-~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~---  117 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLT-QRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIE---  117 (591)
T ss_pred             HHHHHHHHHHHHHHhCcC-HHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            345556677776666664 4445555444333 23456678999999999999999999999999887765321000   


Q ss_pred             ccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCC
Q 008060          372 MVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPS  451 (579)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (579)
                                                                                                      
T Consensus       118 --------------------------------------------------------------------------------  117 (591)
T PTZ00207        118 --------------------------------------------------------------------------------  117 (591)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHH
Q 008060          452 KFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVIS  531 (579)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~  531 (579)
                      ...|...+..++.+.+ .....+.....+.+.+| +.||.+.|+..+...+|+++.+.+...+.. .++...|++.+++.
T Consensus       118 ~s~~~l~l~r~l~G~G-~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~  194 (591)
T PTZ00207        118 GSVVRLSVYNGLMTLG-CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA  194 (591)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence            0012222222222222 11122333455677786 678999999999999999875555554444 35667788888888


Q ss_pred             HHHHHHhhhhccCC
Q 008060          532 VAALLFVLIFVPET  545 (579)
Q Consensus       532 ~~~~~~~~~~~~~~  545 (579)
                      ++..++.+++++..
T Consensus       195 ~vv~ll~~~~vr~p  208 (591)
T PTZ00207        195 LVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHhheeCC
Confidence            87777666655443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.5e-07  Score=89.51  Aligned_cols=171  Identities=12%  Similarity=0.104  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHH-
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFF-  110 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~-  110 (579)
                      ++.++|+.+.+..+....+++.  .+++.||+++.+.   +.+.+....-.++.+++.|.++||+|++-..+.+..+.. 
T Consensus       268 ~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a---~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl  342 (459)
T KOG4686|consen  268 VLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA---GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTL  342 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc---cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHH
Confidence            3444555554444444333332  5788999999988   888888888899999999999999999988776554443 


Q ss_pred             HHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchh
Q 008060          111 VGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRW  190 (579)
Q Consensus       111 i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~  190 (579)
                      .+-.+..|  +++.=.+...++|+............++...|.++.|.+.|..+...++|-++.|++++.+.+..+++-+
T Consensus       343 ~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~  420 (459)
T KOG4686|consen  343 LGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN  420 (459)
T ss_pred             HHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence            33333332  3333445667788887766666677788899999999999999999999999999999999997764333


Q ss_pred             ---HHHHhhHHHHHHHHHHHhc
Q 008060          191 ---MLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       191 ---~f~i~~i~~l~~~i~~~~l  209 (579)
                         .|++.+.+++....+.+.+
T Consensus       421 le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  421 LEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhe
Confidence               3444445555554444443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.72  E-value=1.1e-07  Score=103.54  Aligned_cols=143  Identities=22%  Similarity=0.217  Sum_probs=117.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060          310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (579)
                      +.....+...+..++..+|++++|+++||+|||++++.+.++..++.+...+..+                         
T Consensus       116 ~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~-------------------------  170 (521)
T KOG0255|consen  116 SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN-------------------------  170 (521)
T ss_pred             cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc-------------------------
Confidence            5566777888889999999999999999999999999999999888866665432                         


Q ss_pred             ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060          390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS  469 (579)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (579)
                                                                                       +....+.=++.+++.
T Consensus       171 -----------------------------------------------------------------~~~~~~~Rfl~G~~~  185 (521)
T KOG0255|consen  171 -----------------------------------------------------------------YWMFLIFRFLSGFFG  185 (521)
T ss_pred             -----------------------------------------------------------------HHHHHHHHHHHHhhc
Confidence                                                                             333555556666666


Q ss_pred             cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      .+.....+.+..|+++++.|+.+..+ ....+.++.+++...+++..  +|++.+++..+..++..++ +++.||.+
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            66677778999999999999999999 88889999999999998887  8999999988888877766 55566764

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.72  E-value=9e-08  Score=94.32  Aligned_cols=130  Identities=18%  Similarity=0.181  Sum_probs=100.0

Q ss_pred             HHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhh
Q 008060           80 AGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGAL  159 (579)
Q Consensus        80 lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~  159 (579)
                      +.-.-|.++.+++.||+|||+.+..++++++++.++...+.+-....+.-|..-++..+.+.+.+.|..|.+|..-|+.+
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            34456788999999999999999999999999999887765543333333444444445566778899999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhccCC
Q 008060          160 VSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPES  212 (579)
Q Consensus       160 ~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpes  212 (579)
                      .|.-....-+|.++.|+++ ...+.  +-..+..+.+.++++..+..+++|-.
T Consensus       472 vGtcSsmaRIggI~~p~iA-~~~e~--s~sl~i~vy~~~~ilagIavcffPiE  521 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA-MRAEL--STSLPIFVYGALFILAGIAVCFFPIE  521 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH-HHhcc--ceeehHHHHHHHHHHHHHHheeeeec
Confidence            9999999999999999999 33333  24456666777777788887777743

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.7e-06  Score=85.70  Aligned_cols=144  Identities=18%  Similarity=0.098  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhc-----cccchHHHH
Q 008060           29 VLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMND-----RFGRRTSIL  103 (579)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsD-----r~Grr~vl~  103 (579)
                      ....+..+.+.+.+++...+..+ .+|.+.+.=|.|..+.   +. .+..+..+. --+.|.++.|     |+||||.-+
T Consensus        29 d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~---a~-fS~ay~P~s-LKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   29 DRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ---AI-FSFAYWPFS-LKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh---hh-hhhhhhHHH-HHHHHHhhhHHHHHHhhcccccee
Confidence            33445555566788888888888 8898888667766665   32 222222222 2568889999     999998644


Q ss_pred             H-HHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHH
Q 008060          104 V-ADFLFFVGAVIMAAA-----------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ  171 (579)
Q Consensus       104 ~-~~~l~~i~~ll~~~a-----------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~  171 (579)
                      . +..+.+..+++.+.-           ++...+....++.-+..+.--.+.-...-....+++-|-+......+...|.
T Consensus       103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gy  182 (510)
T KOG3574|consen  103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGY  182 (510)
T ss_pred             eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhH
Confidence            3 555555555555432           2333333344555555555555556666667777777777776666666666


Q ss_pred             HHHHHHH
Q 008060          172 FLSYLIN  178 (579)
Q Consensus       172 ~ig~~l~  178 (579)
                      +++..+-
T Consensus       183 fL~~~if  189 (510)
T KOG3574|consen  183 FLGNVVF  189 (510)
T ss_pred             Hhhccee
Confidence            5554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.67  E-value=5.2e-07  Score=95.68  Aligned_cols=179  Identities=14%  Similarity=0.031  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCchhhHHH-HHHHHHHHHHHHHHhcc
Q 008060          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFID----RTGRKKLLVIS-LSGVILSLGVLSAVFHE  365 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  365 (579)
                      ++.....+.+.|++..+. +....+.+.....+.+++..++.|+++|    |+|||+.++.+ ....++++.++....+.
T Consensus        19 ~~~l~~~~l~~yl~~lg~-~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~   97 (477)
T TIGR01301        19 GWALQLSLLTPYVQELGI-PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI   97 (477)
T ss_pred             HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence            356666777788887776 6677788888888899999999999999    59999998764 55555555555443221


Q ss_pred             cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY  445 (579)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (579)
                      ......           +.                                                       ++    
T Consensus        98 ~~~~~~-----------~~-------------------------------------------------------~~----  107 (477)
T TIGR01301        98 GHLFGD-----------NL-------------------------------------------------------DK----  107 (477)
T ss_pred             hhhccc-----------cc-------------------------------------------------------cc----
Confidence            000000           00                                                       00    


Q ss_pred             ccCCCCCcc---hHHHHHHHHHHHhhccCcccccceeeccccccccc--hhhhHHHHHHHHHHHHHHHHHHHHH--HHhc
Q 008060          446 TRGCPSKFG---WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFR--GVCGGIAATANWISNLIVAQSFLSL--TQAI  518 (579)
Q Consensus       446 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~gi~~~~~~~g~~i~~~~~g~~--~~~~  518 (579)
                           ....   +..++.+.+........ .+...++++|..|++.|  +.+.++.+....+|+.+++.+.+..  .+..
T Consensus       108 -----~~~~~~i~~~~i~~~lld~~~n~~-~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~  181 (477)
T TIGR01301       108 -----KTKPRAIIVFVVGFWILDVANNML-QGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF  181 (477)
T ss_pred             -----cchhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence                 0001   11222222222222222 23445889999998765  6799999999999999999887764  2221


Q ss_pred             -------------ccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          519 -------------GTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       519 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                                   +++..|.+.+++.+++.++..+..+|..
T Consensus       182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                         4677899988888898888888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.65  E-value=1.2e-06  Score=86.81  Aligned_cols=175  Identities=21%  Similarity=0.223  Sum_probs=139.2

Q ss_pred             ccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHH
Q 008060           23 SWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTS  101 (579)
Q Consensus        23 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~v  101 (579)
                      -|+++.-|.+.+...+-.+..+...    .-+|.+..|-|.+..+.   |++.+...+..+..++....+++|. .+|+.
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~----~WLP~ili~~G~sa~~a---G~llsl~~l~~~~~~ll~P~la~R~~n~r~~  276 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVI----GWLPAILIDRGLSAAEA---GSLLSLMQLAQLPTALLIPLLARRSKNQRPL  276 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHH----HHHHHHHHHcCCCHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence            4566667777776666655554433    45588889999999999   9999999999999999999999965 57777


Q ss_pred             HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc-chhhhhhhHHHHHHHHHHHHHHHHH
Q 008060          102 ILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI-RGALVSTNGFLITSGQFLSYLINLA  180 (579)
Q Consensus       102 l~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~-R~~~~~~~~~~~~iG~~ig~~l~~~  180 (579)
                      .+....++.++.+.+.+.+.-..++- -++.|+|.|..++.+...+.+..+..+ -++-.++.+....+=..+||.+.|+
T Consensus       277 ~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         277 VVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence            78888888888888877765433333 489999999999999999999887544 4566677777777777889999999


Q ss_pred             hccCcCcchhHHHHhhHHHHHHHHH
Q 008060          181 FTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       181 l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      +.|..++|+..+.......++..+.
T Consensus       356 lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         356 LHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHH
Confidence            9999999999998888777766665

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.64  E-value=3.8e-05  Score=81.20  Aligned_cols=130  Identities=8%  Similarity=-0.065  Sum_probs=96.2

Q ss_pred             hhhhhhhhcccccc--hhhHHHHHHHHHHHHHHHH-HHhHhhhhccccchHHHHHHHHHHHHHHHHHHhc----c-----
Q 008060           53 ALLYIRDDFKSVDR--KTLLQESIVSMAVAGAIIG-AAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAA----P-----  120 (579)
Q Consensus        53 ~lp~i~~~~~~s~~--~~~~~g~l~s~~~lg~~i~-~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a----~-----  120 (579)
                      ++-++++.+..+..  ....+.++.+...+..++. .++.+++++|++|++++-+....+....+++++.    +     
T Consensus        25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p  104 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP  104 (472)
T ss_pred             HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            44567777766432  2233488888887776666 8999999999999999888777776666666553    1     


Q ss_pred             ----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHH
Q 008060          121 ----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLI  177 (579)
Q Consensus       121 ----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l  177 (579)
                                            +.|...+......+-...... .-..+..|.++.+|-.|..++++.+.++|..+++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~  184 (472)
T TIGR00769       105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT  184 (472)
T ss_pred             cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  123333444455555555554 677899999999999999999999999999999999


Q ss_pred             HHHhc
Q 008060          178 NLAFT  182 (579)
Q Consensus       178 ~~~l~  182 (579)
                      ..++.
T Consensus       185 ~~~~~  189 (472)
T TIGR00769       185 IKYFS  189 (472)
T ss_pred             HHHHH
Confidence            88876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.60  E-value=1.5e-06  Score=90.36  Aligned_cols=157  Identities=13%  Similarity=0.055  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHhCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060          296 MYYSPTIVQLSGFASNRT-ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS  374 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (579)
                      .+..|.+.++.+.+ ..+ .+.+......+..+..+.+|+++||+|.|+++..+.+...+..+++.+...          
T Consensus        46 s~a~p~L~~elglT-~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S----------  114 (511)
T TIGR00806        46 SFITPYLLTVLNFT-EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS----------  114 (511)
T ss_pred             HHHHHHHHHHcCCC-HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            33455555566664 455 888888889999999999999999999999999999888888888777532          


Q ss_pred             cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060          375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG  454 (579)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (579)
                                                                                                     -
T Consensus       115 -------------------------------------------------------------------------------l  115 (511)
T TIGR00806       115 -------------------------------------------------------------------------------V  115 (511)
T ss_pred             -------------------------------------------------------------------------------H
Confidence                                                                                           1


Q ss_pred             hHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhh---HHHHHHH
Q 008060          455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTF---LIFGVIS  531 (579)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~---~~~~~~~  531 (579)
                      +...+.-++++.+-+.. . ....++...+|+++|+++.|+.+.+..+|.++++.+.+. ....||+.-+   .+.....
T Consensus       116 ~~L~i~R~llGvaEA~~-~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~  192 (511)
T TIGR00806       116 WHMQLMEVFYSVTMAAR-I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFM  192 (511)
T ss_pred             HHHHHHHHHHHHHHHHH-H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHH
Confidence            11233333333333322 3 666888999999999999999999999999999999998 5567765432   2223333


Q ss_pred             HHHHHHhhhhccCCC
Q 008060          532 VAALLFVLIFVPETK  546 (579)
Q Consensus       532 ~~~~~~~~~~~~~~~  546 (579)
                      .+++++. +++|..+
T Consensus       193 ~~a~~~a-~~LP~~~  206 (511)
T TIGR00806       193 TFSVFLA-LFLKRPK  206 (511)
T ss_pred             HHHHHHH-HhCCCCc
Confidence            3344443 4566433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.58  E-value=7.7e-07  Score=94.31  Aligned_cols=146  Identities=16%  Similarity=0.086  Sum_probs=118.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCC
Q 008060          310 SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDY  389 (579)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (579)
                      +..+-+++.+....+.+++.+.+|++.||+|-|+++..+.++.+++.++........                       
T Consensus        71 s~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-----------------------  127 (466)
T KOG2532|consen   71 SSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-----------------------  127 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence            455667777888899999999999999999999999999999998888888765421                       


Q ss_pred             ccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhc
Q 008060          390 SSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFS  469 (579)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (579)
                                                                                      .| .++.+=++.+...
T Consensus       128 ----------------------------------------------------------------~~-~~~~~R~lqGl~~  142 (466)
T KOG2532|consen  128 ----------------------------------------------------------------FY-LLLVLRFLQGLGQ  142 (466)
T ss_pred             ----------------------------------------------------------------ch-hhHHHHHHhHHHH
Confidence                                                                            22 2333333333333


Q ss_pred             cCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh-cccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          470 PGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA-IGTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       470 ~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      ....|....+.++-.|+++|++..++.....++|.+++-.+.|.+.+. .||+..|.+.+++.++-.++.+++..
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            334677778999999999999999999999999999999999999998 99999999999999888776555543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.57  E-value=6.9e-07  Score=92.42  Aligned_cols=163  Identities=17%  Similarity=-0.011  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHHhCC----CchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060          291 GINTVMYYSPTIVQLSGF----ASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHE  365 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (579)
                      +++.+...+..|+.....    .+...+.-+...+....-+..+++|+++|| +|+|+.+..|.+++.++.+++......
T Consensus        36 syYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~  115 (498)
T COG3104          36 SYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS  115 (498)
T ss_pred             hhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccc
Confidence            455555556666654333    455555555555555567788999999999 699999999999999999988764200


Q ss_pred             cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY  445 (579)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (579)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (498)
T COG3104         116 --------------------------------------------------------------------------------  115 (498)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 008060          446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR--FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWT  523 (579)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~  523 (579)
                              +...+.....+++.....+=+....+..|++|++  +|-.+.++..+..++|++++|.+.+++.++.||...
T Consensus       116 --------~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g  187 (498)
T COG3104         116 --------GPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG  187 (498)
T ss_pred             --------cccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence                    0111333333333333344556668899999763  367788888899999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhh
Q 008060          524 FLIFGVISVAALLFVLIF  541 (579)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~  541 (579)
                      |...++-+.++++..++.
T Consensus       188 F~~aavGm~~gl~~f~~~  205 (498)
T COG3104         188 FGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999998886654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.55  E-value=1.7e-05  Score=81.53  Aligned_cols=134  Identities=17%  Similarity=0.176  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      +.+.-+-.+...+..+.+.+..+|+.-+.=.....++..++.++.+++++.+.-+++-.+.+++.|........+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            445555666777778888889998874444456666788899999999999999999999999999988888886 4455


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHHH-HhccC
Q 008060          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILM-LLLPE  211 (579)
Q Consensus       152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~~-~~lpe  211 (579)
                      ++    ...+-+.++.+.+.++|+..-..+.. .+ +-|..+++...+.++..+.+ +.+|.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            54    34677777778788888877766665 33 34777777766655555553 44443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.50  E-value=1.8e-06  Score=93.93  Aligned_cols=140  Identities=21%  Similarity=0.159  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060          315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT  394 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (579)
                      +++.....+++.++.++.|+++|++|||+.++++.+...++.++.....+                              
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~------------------------------  141 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS------------------------------  141 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh------------------------------
Confidence            68888899999999999999999999999999999999999998887642                              


Q ss_pred             cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060          395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT  474 (579)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (579)
                                                                                 .+...++-++.+.+.+.. ..
T Consensus       142 -----------------------------------------------------------~~~l~~GR~l~G~g~G~~-~~  161 (513)
T KOG0254|consen  142 -----------------------------------------------------------WYQLIVGRILTGLGVGGA-SV  161 (513)
T ss_pred             -----------------------------------------------------------HHHHHHHHHHhccchhhh-hh
Confidence                                                                       122233444444333332 23


Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAI--GTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      +...+.+|+.|++.||...++.+....+|..++ .+.+...++.  +|+..+.+..+.+++..+. .+++||+.
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            445899999999999999999999888777777 5666666654  7988888888877777777 67788653

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.49  E-value=3.2e-06  Score=82.92  Aligned_cols=256  Identities=13%  Similarity=0.074  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc
Q 008060           76 SMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI  155 (579)
Q Consensus        76 s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~  155 (579)
                      -+..-.+.+.-++.-.+.|..--|+++++-.+......++.-+.++.+.+=+.-++.|...+ ...+-++++-+..++++
T Consensus        49 PvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~  127 (433)
T KOG3810|consen   49 PVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEM  127 (433)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHH
Confidence            33344555666777789999988999888777777778888889999999899999999765 56677788888999999


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcC
Q 008060          156 RGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYP  234 (579)
Q Consensus       156 R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~  234 (579)
                      +.++.+...+..-.|...|..++..++.... +.+..-.+.-....+..+..+++|..+|-+..+.+.++..  .     
T Consensus       128 Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v-----  200 (433)
T KOG3810|consen  128 YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--V-----  200 (433)
T ss_pred             HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--e-----
Confidence            9999999999999999999999988876533 2334444444434444455667776654443332222111  0     


Q ss_pred             CCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhH
Q 008060          235 AHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG-FASNRT  313 (579)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  313 (579)
                         .+.+....+.............-..++.+..++|.+..+.+...+-     ..+++-+.+|....-++.. ......
T Consensus       201 ---~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~-----scg~~QV~nY~Q~LW~~~~~~~~~vy  272 (433)
T KOG3810|consen  201 ---GDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALA-----SCGYYQVTNYTQILWKEVAPNPANVY  272 (433)
T ss_pred             ---ccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHh-----hchhHHHHHHHHHHHHhhCCCchhhh
Confidence               0000000000000000001111234667778888887766654433     3466777777666655542 222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 008060          314 ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI  347 (579)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  347 (579)
                      .|..-.+....++++.+..|++.-...|+.-+++
T Consensus       273 NG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll  306 (433)
T KOG3810|consen  273 NGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLL  306 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHheeeccchhhHHHH
Confidence            3444455566688888889998766666644333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.45  E-value=2e-06  Score=91.48  Aligned_cols=90  Identities=22%  Similarity=0.347  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------hcccchhhHHHHHHH
Q 008060          458 LVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ------AIGTSWTFLIFGVIS  531 (579)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~  531 (579)
                      ++++-++.+.+..+..|....++...+.+++||..+|+.+....+|+++++.+...+.+      ..||++.|++-|++.
T Consensus       137 ~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~  216 (495)
T KOG2533|consen  137 LIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVIT  216 (495)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHH
Confidence            66666677777777778888999999999999999999999999999999998877643      468999999999999


Q ss_pred             HHHHHHhhhhccCCCC
Q 008060          532 VAALLFVLIFVPETKG  547 (579)
Q Consensus       532 ~~~~~~~~~~~~~~~~  547 (579)
                      ++..+++++++|+...
T Consensus       217 ~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  217 LVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHheEEEEecCChh
Confidence            9999988888886544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.44  E-value=1.9e-05  Score=80.32  Aligned_cols=187  Identities=17%  Similarity=0.259  Sum_probs=136.9

Q ss_pred             CchhhHHHhhhccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHh
Q 008060           12 DASAFRECFSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGG   90 (579)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G   90 (579)
                      ++++..+...+-+..+.-.+.+..+++..+...+..    .++.+ =.+-||.+..+.   ..+......|..++....|
T Consensus       193 ~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD----~iLEPygg~Vfgmsv~eT---T~Lta~~~~G~L~G~~~~g  265 (403)
T PF03209_consen  193 PRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQD----VILEPYGGEVFGMSVGET---TRLTAFWGGGTLLGMLLAG  265 (403)
T ss_pred             CCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhH----HHcCCchhHHcCCCHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            334455554444444444444444545444444333    33333 346689998888   8899999999999999999


Q ss_pred             hhhc-cccchHHHHHHHHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHH
Q 008060           91 WMND-RFGRRTSILVADFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFL  166 (579)
Q Consensus        91 ~lsD-r~Grr~vl~~~~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~  166 (579)
                      ++.. |.++|+.-.+++.+..++..+.   +...+.+.+...-++.|++.|.......+.+.+...+++.|..+|.+...
T Consensus       266 ~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaa  345 (403)
T PF03209_consen  266 FLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAA  345 (403)
T ss_pred             HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHH
Confidence            8887 6777887778887777766654   44568899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccCcC---------cchhHHHHhhHHHHHHHHH
Q 008060          167 ITSGQFLSYLINLAFTRAPG---------TWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       167 ~~iG~~ig~~l~~~l~~~~~---------~Wr~~f~i~~i~~l~~~i~  205 (579)
                      ..+...++..+++.+.|...         .+-.+|.+.++..++.+++
T Consensus       346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998776321         2555666666555444444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=1.4e-05  Score=85.47  Aligned_cols=114  Identities=13%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHhhchhhhhhHhHhhhh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAP--NPGALITGRVFVGLGVGMASMTSPLYISE  149 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e  149 (579)
                      +.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++.-++.|++.+...+...+++.|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888899999999999999999987765554444333333322  23344455566788777777766777777


Q ss_pred             cCC-------cccchhhhhhhHHHHHHHHHHHHHHHHHhccCc
Q 008060          150 ASP-------AKIRGALVSTNGFLITSGQFLSYLINLAFTRAP  185 (579)
Q Consensus       150 ~~p-------~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~  185 (579)
                      ..+       .++.|..++......-+|..+++.+++++.+..
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~  388 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG  388 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            665       222255556667788889999998888876543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.41  E-value=1.1e-06  Score=68.92  Aligned_cols=82  Identities=13%  Similarity=0.056  Sum_probs=75.8

Q ss_pred             HhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcch
Q 008060           42 LFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPN  121 (579)
Q Consensus        42 ~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~  121 (579)
                      ..++.+..++|++|.+++|.+++..+.   |++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++
T Consensus         3 amGigRFayTplLP~M~~~~~ls~~~a---g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    3 AMGIGRFAYTPLLPLMQADGGLSLSQA---GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             chhhHHHHHHhHhHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            356788999999999999999999999   99999999999999999999999988899999999999999999999988


Q ss_pred             hhHHH
Q 008060          122 PGALI  126 (579)
Q Consensus       122 ~~~ll  126 (579)
                      ++.+.
T Consensus        80 ~~~w~   84 (85)
T PF06779_consen   80 FWLWS   84 (85)
T ss_pred             hHHHh
Confidence            87653

Note that many members are hypothetical proteins.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.41  E-value=8.8e-07  Score=91.79  Aligned_cols=149  Identities=15%  Similarity=0.131  Sum_probs=130.0

Q ss_pred             hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhc
Q 008060           57 IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGV  136 (579)
Q Consensus        57 i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~  136 (579)
                      -.++++....-.   |........|-.+.-++.+++.+|+|+-+++.+++.+..+=.+..++..|.|+.+...+++|+..
T Consensus       397 Hled~~~~~~Lf---Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~  473 (618)
T KOG3762|consen  397 HLEDLGGIKTLF---GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITH  473 (618)
T ss_pred             HHhhcCCcceee---eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHH
Confidence            456666444444   77778888888888899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhHhHhhhhcCCcccchhhhhhhHH-HHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060          137 GMASMTSPLYISEASPAKIRGALVSTNGF-LITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       137 g~~~~~~~~~l~e~~p~~~R~~~~~~~~~-~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~l  209 (579)
                      +.++.+..+|+++..|++.|+.+.++... ..++|--+|.+++|.+.+.++ =|..|.+.++.+++.+++...+
T Consensus       474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998654 468999999999999999887 8999999988877776664443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.39  E-value=2.9e-06  Score=90.95  Aligned_cols=125  Identities=9%  Similarity=0.092  Sum_probs=108.3

Q ss_pred             hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh----------cchhhHHHHH
Q 008060           59 DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA----------APNPGALITG  128 (579)
Q Consensus        59 ~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~----------a~~~~~ll~~  128 (579)
                      +.+|.++...   |.+.....++..++....+++.+|++.|+++.++.++.+++.+....          .++.+.++..
T Consensus       281 ~~lG~s~~~~---G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~  357 (468)
T TIGR00788       281 QCLPGGPSFS---GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGD  357 (468)
T ss_pred             ccCCCCcchh---hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeeh
Confidence            5688888888   99999999999999999999999999999999999999887765431          1344455666


Q ss_pred             HHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       129 R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      -++.+++.+..+.+...++++..|+++++...++..+..++|..+++.+++.+.+..+
T Consensus       358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       358 SIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             hHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            7889999999999999999999999999999999999999999999999999887544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.37  E-value=6.3e-07  Score=91.20  Aligned_cols=179  Identities=16%  Similarity=0.098  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhH-----HHHHHHHH-HHHHHHHHHhHhhhhccccchHHHHH
Q 008060           31 RLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLL-----QESIVSMA-VAGAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        31 ~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~-----~g~l~s~~-~lg~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      +.++..+..+|+.-......+.....+.+.++..+.+...     ......+. ..+++.|-.+...++|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            6777888888888888888888888898888866554422     11112222 22233355667789999999999999


Q ss_pred             HHHHHHHHHHHHHhcch--------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHH
Q 008060          105 ADFLFFVGAVIMAAAPN--------PGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL  176 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a~~--------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~  176 (579)
                      |.+++++..+..+...|        .....+..++.-+|-+   .....+.+|.||.+-|+..-|+..+..-.|+++|..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999988766        2223333444444433   334556799999999999999999999999999999


Q ss_pred             HHHHhcc-----CcCcchhHHHHhhHHHHHHHHHHHhccCCh
Q 008060          177 INLAFTR-----APGTWRWMLGVAGIPALLQFILMLLLPESP  213 (579)
Q Consensus       177 l~~~l~~-----~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp  213 (579)
                      .-.++.+     ..+ -|+.|++.+.+.++..+..+++||+.
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeeccc
Confidence            9999888     555 89999999999998888888899984

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.37  E-value=8.7e-06  Score=84.98  Aligned_cols=144  Identities=18%  Similarity=0.239  Sum_probs=105.9

Q ss_pred             HHHhhhhhhhhhhhhhhhhh-hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHh
Q 008060           40 GLLFGYDTGVISGALLYIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA  118 (579)
Q Consensus        40 ~~~~~~~~~~~~~~lp~i~~-~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~  118 (579)
                      .++......+.+.+..+..+ .+|.++...   .+.......+..++.+++.++.+|+|+|+++.++.++..++.++.-+
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~---~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f  321 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFA---YLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYF  321 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHh
Confidence            33333344444444444333 234433334   66777777788888999999999999999999999999999998888


Q ss_pred             cc--hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc------cc-chhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          119 AP--NPGALITGRVFVGLGVGMASMTSPLYISEASPA------KI-RGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       119 a~--~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~------~~-R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      .+  +.+.+++..++.+++.+...+...++++|..+-      ++ -|...+......=+|.+++..+.++.....|
T Consensus       322 ~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         322 TPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             hcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65  788888999999999999999999998776542      22 2666677777777888888888777765443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.32  E-value=6.1e-06  Score=78.02  Aligned_cols=101  Identities=15%  Similarity=0.258  Sum_probs=79.3

Q ss_pred             hhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060           47 TGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (579)
Q Consensus        47 ~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll  126 (579)
                      .-..+|.+..+-+.++...++.   |.+....+-..++...+.|.++|+-|||+..+.-++.+.+++ +.-.+++|-.++
T Consensus        53 DWLQgPYvYyLYstYgFgkG~I---gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLm  128 (454)
T KOG4332|consen   53 DWLQGPYVYYLYSTYGFGKGDI---GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLM  128 (454)
T ss_pred             hhhcCceeeeeehhcCccCCcc---ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEe
Confidence            4445677777888888888888   888888888888899999999999999997665555555444 344578899999


Q ss_pred             HHHHHHHhhchhhhhhHhHh-hhhcC
Q 008060          127 TGRVFVGLGVGMASMTSPLY-ISEAS  151 (579)
Q Consensus       127 ~~R~l~Gig~g~~~~~~~~~-l~e~~  151 (579)
                      ++|.+-|+..+..+...-++ +.|..
T Consensus       129 VGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  129 VGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             ehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            99999999999888877654 56665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.25  E-value=4.3e-08  Score=104.73  Aligned_cols=145  Identities=21%  Similarity=0.161  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccc
Q 008060          313 TALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSA  392 (579)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (579)
                      ...+......++.++|++++|+++||+|||+.+..+..+..++.++..+.....                          
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~--------------------------  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYN--------------------------  100 (451)
T ss_pred             HHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence            356777888899999999999999999999999999988888887766653210                          


Q ss_pred             cccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCc
Q 008060          393 ATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGM  472 (579)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (579)
                                                                                   ++..+...-++.++...+.
T Consensus       101 -------------------------------------------------------------~~~~~~~~R~~~G~~~g~~  119 (451)
T PF00083_consen  101 -------------------------------------------------------------NFWMLLIGRFLIGFGIGGA  119 (451)
T ss_pred             -------------------------------------------------------------ccccccccccccccccccc
Confidence                                                                         0111222222222222233


Q ss_pred             ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---cccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA---IGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      .+....++.|..|++.|+...++.+....+|..++..+.-.+.+.   .+|+..+.+.++.+++..+. ..++||+
T Consensus       120 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~-~~~~pES  194 (451)
T PF00083_consen  120 YVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLL-RFFLPES  194 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            456678999999999999999999988888877776554333222   34888887777777665554 3567876

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.24  E-value=1.8e-05  Score=76.45  Aligned_cols=140  Identities=23%  Similarity=0.178  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 008060          291 GINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHS  370 (579)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (579)
                      ..+.+..|.|.+-+..+. +..+...+.....++..+ .+..|.+.|++|.+.++.+|.....+++.++.......-.  
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~-sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~--   92 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGY-SQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP--   92 (250)
T ss_pred             cccchhhhhHHHHHHhCC-CHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC--
Confidence            456677788877666655 667777777777777766 4888999999999999999999999999888776542211  


Q ss_pred             CccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCC
Q 008060          371 PMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCP  450 (579)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (579)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (250)
T PF06813_consen   93 --------------------------------------------------------------------------------   92 (250)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchHHHHHHHHHHHhhccCc-ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          451 SKFGWLALVGLALYIIFFSPGM-GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                      + .+.+ ...+..+..+.+... .+.......+.+| +.||++.|+.-....+++++-..+...+.+.
T Consensus        93 ~-~~~~-~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   93 S-LPVW-LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             c-cchH-HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            0 0111 222222333333222 2333344457787 5799999999999999999988888777665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.23  E-value=2.6e-05  Score=69.61  Aligned_cols=109  Identities=12%  Similarity=0.163  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC
Q 008060           73 SIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASP  152 (579)
Q Consensus        73 ~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p  152 (579)
                      .-.++.+....+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..+.....++.+..+
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~  119 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST  119 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence            35566777788888999999999999999999999988655443 56778899999999999999999999999999999


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          153 AKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       153 ~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      +++|++..+++......+.++|.++...+.
T Consensus       120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  120 EETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888888888776553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.20  E-value=1.9e-05  Score=83.43  Aligned_cols=137  Identities=21%  Similarity=0.158  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccccc
Q 008060          322 SGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCM  401 (579)
Q Consensus       322 ~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (579)
                      ++..++.+...|.++||+|||..+........+....+.+..                                      
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--------------------------------------  113 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--------------------------------------  113 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--------------------------------------
Confidence            566788889999999999999999888877777776666542                                      


Q ss_pred             ccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeec
Q 008060          402 KCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNS  481 (579)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (579)
                                                                           |+.++  .....+..........++++
T Consensus       114 -----------------------------------------------------~~~~~--~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen  114 -----------------------------------------------------YWFFL--LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             -----------------------------------------------------HHHhh--hcccccchhhhhhhhhhhee
Confidence                                                                 11122  11111111122345568999


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCChH
Q 008060          482 EIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIE  551 (579)
Q Consensus       482 ~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (579)
                      +....+.|....|+.+...+.+..++|...+.+.+..|+...|.+..+..++..+...+++||+..++.+
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998766543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.14  E-value=4.7e-05  Score=76.86  Aligned_cols=159  Identities=12%  Similarity=0.051  Sum_probs=122.7

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM  116 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~  116 (579)
                      ++.++.--........++.+.+| .|.+..+.   ....+.+..+..+|.+++.++..|+...|++.+..++..+-++..
T Consensus       243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~a---a~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~  319 (422)
T COG0738         243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQA---AYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAV  319 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555666666555 67777777   889999999999999999999999999999999888888888888


Q ss_pred             HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhh
Q 008060          117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAG  196 (579)
Q Consensus       117 ~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~  196 (579)
                      +++++...+ .+-++.|++.+..+|...+.-.+..| + .....|..-....+|.++-|.+.|++.|..+ -...+....
T Consensus       320 ~l~~g~v~~-~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~p  395 (422)
T COG0738         320 ALIGGVVAL-YALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVP  395 (422)
T ss_pred             HHhcChHHH-HHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhhh-hHHHHHHHH
Confidence            888885544 34577899999999999999999998 3 3555566666778899999999999999887 666666445


Q ss_pred             HHHHHHH
Q 008060          197 IPALLQF  203 (579)
Q Consensus       197 i~~l~~~  203 (579)
                      .+|.+.+
T Consensus       396 llc~lyV  402 (422)
T COG0738         396 LLCYLYV  402 (422)
T ss_pred             HHHHHHH
Confidence            5555444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.14  E-value=0.00025  Score=73.59  Aligned_cols=45  Identities=13%  Similarity=-0.030  Sum_probs=36.7

Q ss_pred             ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008060          473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA  517 (579)
Q Consensus       473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~  517 (579)
                      .....++-+.+..|..-|+.|.+.|+..++|+--...+.-++.|.
T Consensus       423 FVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            344457888899999999999999999999988777777666654

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.05  E-value=0.012  Score=61.42  Aligned_cols=155  Identities=11%  Similarity=0.014  Sum_probs=108.0

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      +++.+..++.+.+..++..+..+    ++-.+++.+..+......+.++-+...+ +..+..++.+++.+++.|.+++-+
T Consensus        22 ~r~E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          22 RRYELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            34455555555555555555444    4456778887775555555788888888 788889999999999999999888


Q ss_pred             HHHHHHHHHHHHHhc---------c-----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcC
Q 008060          105 ADFLFFVGAVIMAAA---------P-----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEAS  151 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a---------~-----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~  151 (579)
                      -+..+....+++++.         +                       +.|...+.....-+-...... .-.....|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            777777777777652         0                       113333333333333333333 4456678999


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHhccC
Q 008060          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRA  184 (579)
Q Consensus       152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~  184 (579)
                      ..+|-.|..++++.+.+++..++..+..++...
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            989889999999999999999999888888753

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.98  E-value=0.00053  Score=74.54  Aligned_cols=156  Identities=15%  Similarity=0.262  Sum_probs=119.0

Q ss_pred             hhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHHHHHHHhcc------
Q 008060           48 GVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAP------  120 (579)
Q Consensus        48 ~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~~ll~~~a~------  120 (579)
                      .+....+.++.++++.....+   .-..+.+.-......+.++.++|-| ||-+.+.++.++..+|..+..++.      
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a---a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~  131 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA---ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALL  131 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH---HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            345677788889999877665   6667777777778889999999976 898999988888888766544321      


Q ss_pred             -------------------hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCC---ccc---chhhhhhhHHHHHHHHHHHH
Q 008060          121 -------------------NPGALITGRVFVGLGVGMASMTSPLYISEASP---AKI---RGALVSTNGFLITSGQFLSY  175 (579)
Q Consensus       121 -------------------~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p---~~~---R~~~~~~~~~~~~iG~~ig~  175 (579)
                                         ....+....-+..+|.|+.-|...++-+|-++   +++   +...+.++....+.|..++.
T Consensus       132 p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~  211 (571)
T KOG1237|consen  132 PFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQ  211 (571)
T ss_pred             CccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHH
Confidence                               12356666778888999999999999999998   322   23677888889999999999


Q ss_pred             HHHHHhccCcCcchhHHHHhhHHHHHHHHHHH
Q 008060          176 LINLAFTRAPGTWRWMLGVAGIPALLQFILML  207 (579)
Q Consensus       176 ~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~  207 (579)
                      .+..+.-+..+ |.+.|.+.....++.+++++
T Consensus       212 t~~vyiq~~~~-w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  212 TVLVYIQDNVG-WKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             HHHHhhhhccc-ceeeccHHHHHHHHHHHHHH
Confidence            98888877776 99999888876665555543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.97  E-value=3.7e-05  Score=80.56  Aligned_cols=163  Identities=15%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             HHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccc
Q 008060          301 TIVQL-SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGR-KKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVET  378 (579)
Q Consensus       301 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (579)
                      .|++. ....+.+..|+......++.+++++++|+...|.+. |+.++.++++++++.+++......+.           
T Consensus        59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~-----------  127 (488)
T KOG2325|consen   59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN-----------  127 (488)
T ss_pred             hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc-----------
Confidence            45554 223356677888888999999999999999999886 78888999999999988855543221           


Q ss_pred             cccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHH
Q 008060          379 SHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLAL  458 (579)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (579)
                                                                                               +..|+++
T Consensus       128 -------------------------------------------------------------------------~~~y~mL  134 (488)
T KOG2325|consen  128 -------------------------------------------------------------------------GVKYLML  134 (488)
T ss_pred             -------------------------------------------------------------------------chHHHHH
Confidence                                                                                     1123333


Q ss_pred             HHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH---Hh---------c-ccchhhH
Q 008060          459 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT---QA---------I-GTSWTFL  525 (579)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~---~~---------~-g~~~~~~  525 (579)
                      +.-  +..+.+.+.....-.++++..-.+.|.++++..+...-+|.++||.+...+.   +.         + -|..+-+
T Consensus       135 ~~R--~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w  212 (488)
T KOG2325|consen  135 VAR--ILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAW  212 (488)
T ss_pred             HHH--HHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHH
Confidence            333  3333333444555677888666777888888887777788888876544332   11         1 1456788


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCC
Q 008060          526 IFGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      +.+++.++..++..++.+|.....
T Consensus       213 ~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  213 LMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHHHHHHHhheeecccCc
Confidence            888999999888888888765544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.91  E-value=0.024  Score=60.57  Aligned_cols=154  Identities=11%  Similarity=0.041  Sum_probs=98.2

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHH-HHHHHHHhHhhhhccccchHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVA-GAIIGAAIGGWMNDRFGRRTSILV  104 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~l-g~~i~~l~~G~lsDr~Grr~vl~~  104 (579)
                      .+..+..++.+.+..++..+..+.+    -.+++.+=.+......+..+-....+ +..+...+..+++++++|.+++-+
T Consensus        19 ~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~   94 (491)
T PF03219_consen   19 HRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI   94 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            3445555666666666655554433    34444443333333333555554444 455667789999999999998877


Q ss_pred             HHHHHHHHHHHHHhc---------c----------------------hhhHHHHHHHHHHhhchhhhh-hHhHhhhhcCC
Q 008060          105 ADFLFFVGAVIMAAA---------P----------------------NPGALITGRVFVGLGVGMASM-TSPLYISEASP  152 (579)
Q Consensus       105 ~~~l~~i~~ll~~~a---------~----------------------~~~~ll~~R~l~Gig~g~~~~-~~~~~l~e~~p  152 (579)
                      .+..+.....++++.         +                      +.|.+.+.....-+-.....+ .-..+..|.++
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666666655555541         0                      123333333333333333333 45778899999


Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHhcc
Q 008060          153 AKIRGALVSTNGFLITSGQFLSYLINLAFTR  183 (579)
Q Consensus       153 ~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~  183 (579)
                      .+|-.|..+++..+.++|.+++..+..++.+
T Consensus       175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.85  E-value=0.00046  Score=76.43  Aligned_cols=163  Identities=17%  Similarity=0.088  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060          296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS  374 (579)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (579)
                      ...+..|+.+..+.+...+..+........-+..+++|++.|+ +||++.+.++.++..++..++.........+     
T Consensus         7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~-----   81 (654)
T TIGR00926         7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGH-----   81 (654)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccccc-----
Confidence            3334455544444445555555555555567778889999997 7999999999998888887776532100000     


Q ss_pred             cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060          375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG  454 (579)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (579)
                                                                                                 +. ..
T Consensus        82 ---------------------------------------------------------------------------~~-~~   85 (654)
T TIGR00926        82 ---------------------------------------------------------------------------PL-HD   85 (654)
T ss_pred             ---------------------------------------------------------------------------ch-HH
Confidence                                                                                       00 01


Q ss_pred             hHHHHHHHHHHHhhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhc-------ccchhh
Q 008060          455 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAI-------GTSWTF  524 (579)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~-------g~~~~~  524 (579)
                      ...++++++ +.+...++-+...+...|.++++   .+-....+...+.++|+++++.+.+.+.+..       +|..+|
T Consensus        86 ~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF  164 (654)
T TIGR00926        86 LLDLLGLAL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAF  164 (654)
T ss_pred             HHHHHHHHH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence            112222222 22223333455557777777643   3667888889999999999999999887543       588888


Q ss_pred             HHHHHHHHHHHHHhhh
Q 008060          525 LIFGVISVAALLFVLI  540 (579)
Q Consensus       525 ~~~~~~~~~~~~~~~~  540 (579)
                      .+.+++++++.++...
T Consensus       165 ~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       165 GVPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888776544

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.75  E-value=0.0051  Score=65.01  Aligned_cols=38  Identities=13%  Similarity=0.058  Sum_probs=29.4

Q ss_pred             ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060          473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS  510 (579)
Q Consensus       473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~  510 (579)
                      .+....+..+.+++++|-.+..++..+-.+|-++|..+
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555677777888999999988888888887777754

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.75  E-value=0.00049  Score=71.58  Aligned_cols=108  Identities=19%  Similarity=0.364  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhc--c-h------hhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcc---cchhhhhhhHHHH
Q 008060          100 TSILVADFLFFVGAVIMAAA--P-N------PGALITGRVFVGLGVGMASMTSPLYISEASPAK---IRGALVSTNGFLI  167 (579)
Q Consensus       100 ~vl~~~~~l~~i~~ll~~~a--~-~------~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~---~R~~~~~~~~~~~  167 (579)
                      |.++++.++..+|.++..++  + .      .+.++++-++.++|.|+.-|....+++|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888884432  2 2      367889999999999999999999999999865   4677888999999


Q ss_pred             HHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060          168 TSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (579)
Q Consensus       168 ~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~  208 (579)
                      ++|..++..+.+++.+..+ |.+.|.+.++..++.++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999998887 999999999877666665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.72  E-value=0.00013  Score=56.70  Aligned_cols=70  Identities=13%  Similarity=0.216  Sum_probs=58.3

Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHH
Q 008060           37 GIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLF  109 (579)
Q Consensus        37 ~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~  109 (579)
                      ...++........+.|.+|...++.|.+..+.   |.+.++..+...++++++|.++||+|+++.++....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i---Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI---GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34455555666777788888888899988888   99999999999999999999999999998877765543

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.64  E-value=0.0076  Score=61.73  Aligned_cols=176  Identities=16%  Similarity=0.060  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH
Q 008060           32 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV  111 (579)
Q Consensus        32 ~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i  111 (579)
                      ...+.++..+........+....++..+.+...+.+............+...+....-..+.-|. |+++ ..++.+.++
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~-~~~l~~~~i   96 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRV-GYLLSLIAI   96 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHH
Confidence            33444444555666677777777888777765554443334444445555555566666666662 2222 222211111


Q ss_pred             -H--HHHHHh-------cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHH---
Q 008060          112 -G--AVIMAA-------APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLIN---  178 (579)
Q Consensus       112 -~--~ll~~~-------a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~---  178 (579)
                       .  .+..+.       ...+...++.-.+.+.+.|.......... ..+|++.-+..++    +.++++++..++.   
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a-~~~P~~ytqavm~----G~a~aG~l~Sl~~i~t  171 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLA-GLFPSEYTQAVMS----GQALAGTLTSLLRILT  171 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhh-hcCCHHHHHHHHh----cchhHhHHHHHHHHHH
Confidence             1  111222       12355666667778888777666665544 4456555443333    3333333322222   


Q ss_pred             -HHhccCcCcchhHHHHhhHHHHHHHHHHHhccCChh
Q 008060          179 -LAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPR  214 (579)
Q Consensus       179 -~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~lpesp~  214 (579)
                       ....+...+=-..|.+..++.+++++++..+|+.|-
T Consensus       172 ka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf  208 (406)
T KOG1479|consen  172 KAAFSDSRTSALIYFITSTVILLLCFVLYLVLPKLPF  208 (406)
T ss_pred             HHhcCCCCceeehhHHHHHHHHHHHHHHHHHhhcchH
Confidence             222222222233455555666666666667777653

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.63  E-value=0.0062  Score=61.30  Aligned_cols=54  Identities=24%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060          304 QLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV  358 (579)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  358 (579)
                      ++.+. +..+...+.....+.+.+...+.|.++||+|||+.-+..+++..++++.
T Consensus        62 ~~yg~-~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   62 ESYGF-SEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             HHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            55565 5555666666677778888889999999999999988888877777753

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.60  E-value=0.00046  Score=65.87  Aligned_cols=56  Identities=18%  Similarity=0.377  Sum_probs=36.5

Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHh---cc-CcCcchhHHHHhhHHHHHHHHHHHhc
Q 008060          154 KIRGALVSTNGFLITSGQFLSYLINLAF---TR-APGTWRWMLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       154 ~~R~~~~~~~~~~~~iG~~ig~~l~~~l---~~-~~~~Wr~~f~i~~i~~l~~~i~~~~l  209 (579)
                      ++|+..+.....+.++|.++.-+.--.-   .+ ...+|++++.+.+++.++-++++.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777788888887654332111   11 11259999999998877777665554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.47  E-value=2.3e-05  Score=84.95  Aligned_cols=198  Identities=16%  Similarity=0.058  Sum_probs=0.9

Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccC
Q 008060          303 VQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS  382 (579)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (579)
                      ++.....+..+.+++....-++.++..++..++.+|..|-+.+-.|.++++++.+++.............          
T Consensus        29 iErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~----------   98 (539)
T PF03137_consen   29 IERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYE----------   98 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccc----------
Confidence            3444455677889999999999999999999999998888888899999999988877654332211000          


Q ss_pred             CCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc-hHHHHHH
Q 008060          383 NLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG-WLALVGL  461 (579)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  461 (579)
                                +.....      ...+.++..|.+..+.+-       .+..++.+.++++.        ... +..+++.
T Consensus        99 ----------~~~~~~------~~~~~~~~~c~~~~~~~~-------~~~~~~~~~~~~~~--------~~~~~~~f~~g  147 (539)
T PF03137_consen   99 ----------EASNSN------GNSSISSNLCDSSSSSQA-------SSDCQDCCSSSSSS--------LSGYFYVFILG  147 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------cccccc------cccccccccccccccccc-------cCcccccccccccc--------chHHHHHHHHH
Confidence                      000000      000111122211111110       01111111111111        111 1112222


Q ss_pred             HHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh---------------------cc-
Q 008060          462 ALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA---------------------IG-  519 (579)
Q Consensus       462 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~---------------------~g-  519 (579)
                      -++.+..+....++-.+|+-|.++++..+...|+......+|-++|=.+.+...+.                     .| 
T Consensus       148 q~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA  227 (539)
T PF03137_consen  148 QLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA  227 (539)
T ss_dssp             ----SSS-------------------------------------------------------------------------
T ss_pred             HHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence            22222222233556689999999999999999999888888877776555544311                     13 


Q ss_pred             cchhhHHHHHHHHHHHHHhhhh
Q 008060          520 TSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      |...|++.+++.++..+....+
T Consensus       228 WWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  228 WWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            6667888888888777765444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.40  E-value=0.0016  Score=50.61  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH
Q 008060          284 QVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG  351 (579)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  351 (579)
                      .++..+.+...+.-|.|.++++.|. +..+.+.+..+..+..+++.++.|.++||.++++........
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl-~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGL-SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3455566778888899999998777 667788888888899999999999999999998887655443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.20  E-value=0.0052  Score=67.55  Aligned_cols=207  Identities=15%  Similarity=-0.004  Sum_probs=118.7

Q ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccC
Q 008060          303 VQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFS  382 (579)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (579)
                      ++.....+....+++....-++..+......++.-|..|-+++-.|.++++++.++..+..............       
T Consensus       123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~-------  195 (735)
T KOG3626|consen  123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV-------  195 (735)
T ss_pred             hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh-------
Confidence            3444444566688888888888888889999999999999999999999999988887653322111000000       


Q ss_pred             CCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHH
Q 008060          383 NLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLA  462 (579)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (579)
                       .            ++  -.+.+..+.++.+|-     ..+  -+...+.-+.+|+++++.+         .|..++...
T Consensus       196 -~------------~~--~~~~~~~~~s~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~---------~~llff~~q  244 (735)
T KOG3626|consen  196 -I------------KQ--SVENPSSSLSFCCCN-----KST--NLCRPSPENSKREKESTSY---------PFLLFFLGQ  244 (735)
T ss_pred             -h------------hc--cccCCccccchhhcc-----CCc--cccCCCCCcccccccCCch---------hHHHHHHHH
Confidence             0            00  000000000111111     000  0111111222222222221         233333333


Q ss_pred             HHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHh------------------cc-cchh
Q 008060          463 LYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQA------------------IG-TSWT  523 (579)
Q Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~------------------~g-~~~~  523 (579)
                      ++.+....-..++-.+++-|...++......|+..+...+|=++|=.+.+...+.                  .| |+..
T Consensus       245 ~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlG  324 (735)
T KOG3626|consen  245 LLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLG  324 (735)
T ss_pred             HHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHH
Confidence            3333333334556678999999888889999999888888877776666655422                  12 5668


Q ss_pred             hHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          524 FLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      |++.+.++++..+..++ .|+...+
T Consensus       325 FLi~g~~~~~~a~p~f~-fPk~lp~  348 (735)
T KOG3626|consen  325 FLICGALLLFSAVPLFF-FPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHHHHh-CcccCcc
Confidence            88888888888887644 5554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.95  E-value=0.011  Score=60.87  Aligned_cols=60  Identities=13%  Similarity=0.051  Sum_probs=48.3

Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHH
Q 008060          302 IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAV  362 (579)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  362 (579)
                      +.++..+ +...+.+.+.++.+..++-.+.+-|+.||+|-|..+.++..+..++..+=...
T Consensus        70 ~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~is  129 (480)
T KOG2563|consen   70 YVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLIS  129 (480)
T ss_pred             HHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc
Confidence            3444444 55667788888999999999999999999999999999999888887765544

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.78  E-value=0.014  Score=61.83  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             eeecccc---ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCC
Q 008060          478 IVNSEIY---PLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETK  546 (579)
Q Consensus       478 ~~~~~~~---p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  546 (579)
                      +...|..   |.+ +|...+.......+|++++..+.|.+.+..+++..|.+.+.+..+..+..+++.+|.+
T Consensus       109 a~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~  179 (433)
T PF03092_consen  109 ALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK  179 (433)
T ss_pred             HHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc
Confidence            4555544   444 7788888888999999999999999999999999999998888888777666667633

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.71  E-value=0.022  Score=58.91  Aligned_cols=107  Identities=17%  Similarity=0.117  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH--HHHHHH---HHHhcchhhHHHHHHHHHHhhchhhhhhHhHh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL--FFVGAV---IMAAAPNPGALITGRVFVGLGVGMASMTSPLY  146 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l--~~i~~l---l~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~  146 (579)
                      .+...+|.+|-.++.--...+  |+  |++.+.+++-  ..+..+   ..-+.++.|..++.-+..|+..|..++.....
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            666677777665554322111  33  4443333322  222222   23346889999999999999999999999999


Q ss_pred             hhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          147 ISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       147 l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      +.|-.++++|..++|....+-++|..++.+++-++-
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.62  E-value=0.039  Score=49.31  Aligned_cols=71  Identities=11%  Similarity=0.155  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCC-----chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHH
Q 008060          288 QFVGINTVMYYSPTIVQLSGFA-----SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGV  358 (579)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  358 (579)
                      .+.++.+........++..+..     +......-..+......+.+++.+.+.+++|.|+.++++.+...+-.+.
T Consensus         8 ~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~   83 (156)
T PF05978_consen    8 LFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS   83 (156)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3444444444444444433221     2233344445556667888889999999999999998888776654443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=96.59  E-value=0.091  Score=56.96  Aligned_cols=134  Identities=14%  Similarity=0.033  Sum_probs=80.6

Q ss_pred             hcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHH--HH-HHHHHH----Hhcchh-hHHHHHHHH
Q 008060           60 DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFL--FF-VGAVIM----AAAPNP-GALITGRVF  131 (579)
Q Consensus        60 ~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l--~~-i~~ll~----~~a~~~-~~ll~~R~l  131 (579)
                      -+|.+..+.   +.+.+++.+|.++|+.+++++.++.-|+.. ..-+.+  .+ ++..+.    ++...+ ..++..-++
T Consensus        44 ~~G~s~~~~---~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  119 (521)
T PRK03612         44 LLGDSVTQF---STVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLL  119 (521)
T ss_pred             HhCchHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345544444   999999999999999999988744333322 221111  11 111111    111111 222344466


Q ss_pred             HHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhcc-CcCcchhHHHHhhHH
Q 008060          132 VGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTR-APGTWRWMLGVAGIP  198 (579)
Q Consensus       132 ~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~-~~~~Wr~~f~i~~i~  198 (579)
                      .++..|+..|....+..+... ++-++..|-......+|+++|.++.+++.- ..|..+..+++.++.
T Consensus       120 ~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~  186 (521)
T PRK03612        120 IGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLN  186 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            788888888887776655432 224677888888999999999999887654 555455555544433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.14  Score=53.98  Aligned_cols=143  Identities=14%  Similarity=0.118  Sum_probs=92.6

Q ss_pred             HHHHHhhhhhhhhhhhhhhhhhhc-ccccchhhHHHHHHHHHHHHHHHHHHhHhhhh---ccccchHHHHHHHHHHHHHH
Q 008060           38 IGGLLFGYDTGVISGALLYIRDDF-KSVDRKTLLQESIVSMAVAGAIIGAAIGGWMN---DRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        38 l~~~~~~~~~~~~~~~lp~i~~~~-~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~ls---Dr~Grr~vl~~~~~l~~i~~  113 (579)
                      ...+..+...+....+.|.-..-. ..........+...-...+|..++..+.+.++   +++||++.+.++..+..++.
T Consensus       247 ~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~  326 (461)
T KOG3098|consen  247 PFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGF  326 (461)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHH
Confidence            334455555555555555432221 22222222223333333344444445555555   56799999999888888877


Q ss_pred             HHHHhc------------------chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHH
Q 008060          114 VIMAAA------------------PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSY  175 (579)
Q Consensus       114 ll~~~a------------------~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~  175 (579)
                      ++.-..                  +++...++.-+++|++-+......+.++.+.. +++|..+.++...-..++..++.
T Consensus       327 ~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  327 LLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHh
Confidence            776542                  24566777789999999999999999999999 56689999998888888877766


Q ss_pred             HHHHHh
Q 008060          176 LINLAF  181 (579)
Q Consensus       176 ~l~~~l  181 (579)
                      ......
T Consensus       406 f~~~~~  411 (461)
T KOG3098|consen  406 FFSPYL  411 (461)
T ss_pred             hhhhhh
Confidence            655443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.49  E-value=0.81  Score=45.52  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCc--cc
Q 008060           78 AVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPA--KI  155 (579)
Q Consensus        78 ~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~  155 (579)
                      ..+..+..+++.+.+..++|-|+.+.++...+... +..-+=+.+..++-.-...|++.+..+..--+|+++.-..  ++
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            34445566666678999999999999988877653 2333446788899999999999998887777776555432  23


Q ss_pred             c---------hhhhhhhHHHHHHHHHHHHHHH
Q 008060          156 R---------GALVSTNGFLITSGQFLSYLIN  178 (579)
Q Consensus       156 R---------~~~~~~~~~~~~iG~~ig~~l~  178 (579)
                      |         .+..+.+...+.-+...|-.++
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~is  177 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLIS  177 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHH
Confidence            3         3445555555554544443333

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.23  E-value=0.082  Score=56.21  Aligned_cols=41  Identities=5%  Similarity=0.037  Sum_probs=37.7

Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLT  515 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~  515 (579)
                      +.|.+.+|+...++..+..++....+++|..+++.+...+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999999998888776

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=95.96  E-value=0.19  Score=49.24  Aligned_cols=61  Identities=26%  Similarity=0.189  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHH
Q 008060          295 VMYYSPTIVQLSGFASN-RTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILS  355 (579)
Q Consensus       295 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  355 (579)
                      .....+.+..+...... ...++......+...++.++.|.+.||.|||+.+..+.....++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~   82 (338)
T COG0477          21 LSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG   82 (338)
T ss_pred             HHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence            33445555555544332 34566677777777888899999999999997777666553333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.84  E-value=0.11  Score=53.94  Aligned_cols=156  Identities=13%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             HHHHHHHHH--hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccc
Q 008060          297 YYSPTIVQL--SGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVS  374 (579)
Q Consensus       297 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (579)
                      .|+..|+.+  .+.+..+...-+.-+..-..++..+....+.|.++.|++++++.+...+...++.+...          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s----------   93 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS----------   93 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc----------
Confidence            344556554  34444333333333333345666777888999999999999998888888777766532          


Q ss_pred             cccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcc
Q 008060          375 AVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFG  454 (579)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (579)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (412)
T PF01770_consen   94 --------------------------------------------------------------------------------   93 (412)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHHhhccCcc--cccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHH
Q 008060          455 WLALVGLALYIIFFSPGMG--TAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG--TSWTFLIFGVI  530 (579)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g--~~~~~~~~~~~  530 (579)
                         +..+.+.-++++....  ...++++=...|++.--++.+....+.-+|.+++..++-.+....+  +.....+....
T Consensus        94 ---v~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~  170 (412)
T PF01770_consen   94 ---VLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLAS  170 (412)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence               2222222333332221  2334555555677777788888888888888888877766665333  44444444444


Q ss_pred             HHHHHHHhhhhccCCC
Q 008060          531 SVAALLFVLIFVPETK  546 (579)
Q Consensus       531 ~~~~~~~~~~~~~~~~  546 (579)
                      ..+++++. +++|..+
T Consensus       171 ~~~a~~~~-~fLP~~~  185 (412)
T PF01770_consen  171 VSLALLIA-LFLPMPK  185 (412)
T ss_pred             HHHHHHHH-HHcCCCC
Confidence            44555544 4456543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.51  E-value=0.46  Score=50.04  Aligned_cols=146  Identities=16%  Similarity=0.220  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      +...++..+.++..-.++.....+...-|.++...   |..-+...+....+.+...++.+|+|..|.=+.++.....+.
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~G~s~~~i---gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI---GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            33344444444433334455555555558877777   999999999999999999999999999988777776655444


Q ss_pred             HHHHh---c---c----hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          114 VIMAA---A---P----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       114 ll~~~---a---~----~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      .++..   .   +    +...++.+-.+.=+|.=+.-.+..-++.|..|+++||...|...+..++-..+-..++-.+.
T Consensus       338 ~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~  416 (432)
T PF06963_consen  338 ALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP  416 (432)
T ss_pred             HHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            44332   1   1    22333333333333443455666778999999999999999999998888888777765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.05  E-value=0.99  Score=49.46  Aligned_cols=164  Identities=16%  Similarity=0.099  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCc
Q 008060          312 RTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYS  390 (579)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (579)
                      ..+.-.............+++++++|- +||-+++.++.++..++..++......+.....                   
T Consensus        73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~-------------------  133 (571)
T KOG1237|consen   73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF-------------------  133 (571)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc-------------------
Confidence            333344444455567777899999997 588888888888888887776665443321100                   


Q ss_pred             cccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhcc
Q 008060          391 SAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSP  470 (579)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (579)
                                         -|                 .|+.....|.          .|++.....+...+........
T Consensus       134 -------------------~~-----------------~~~~~~~~c~----------~~s~~q~~~~~~~l~lia~G~g  167 (571)
T KOG1237|consen  134 -------------------MC-----------------KFKPGGNVCE----------SPSKLQLAVLYGALYLIALGAG  167 (571)
T ss_pred             -------------------cc-----------------cCCCCCCccc----------CcchHHHHHHHHHHHHheeccC
Confidence                               01                 0000000111          1122222223322223332333


Q ss_pred             Ccccccceeecccccc----cc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhh
Q 008060          471 GMGTAPWIVNSEIYPL----RF--RGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLI  540 (579)
Q Consensus       471 ~~~~~~~~~~~~~~p~----~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  540 (579)
                      +.-+-..+.-+|-++.    +.  +...+....+..++|..++-.+..++.++.||...|.+..+..+++.++.+.
T Consensus       168 g~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~  243 (571)
T KOG1237|consen  168 GIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLP  243 (571)
T ss_pred             CCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHc
Confidence            4444455677777762    22  2356667777888888888888888888899999999999888888776543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.35  E-value=0.094  Score=54.45  Aligned_cols=75  Identities=16%  Similarity=-0.025  Sum_probs=58.3

Q ss_pred             hhccCcccccceeeccccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          467 FFSPGMGTAPWIVNSEIYPLR---FRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       467 ~~~~~~~~~~~~~~~~~~p~~---~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      ....+.=|....+..|.++++   .|...........++|..+++.+.+++.++.||...|.+.++..+++.+..+.-
T Consensus        45 ~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   45 VGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence            333344455567888888765   456677788999999999999999999999999999999999999888875543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=94.24  E-value=0.51  Score=37.21  Aligned_cols=71  Identities=15%  Similarity=0.087  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhc
Q 008060          293 NTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFH  364 (579)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (579)
                      +.+...+|...++.+. +..+++++.....++.++|.+...++.++..+++.+..+.+...+..+.+....+
T Consensus         9 FayTplLP~M~~~~~l-s~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    9 FAYTPLLPLMQADGGL-SLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHhHhHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444456777666555 7888999999999999999999999999888888888888888888877776543

Note that many members are hypothetical proteins.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.87  E-value=0.013  Score=59.14  Aligned_cols=38  Identities=11%  Similarity=0.002  Sum_probs=2.4

Q ss_pred             ccccceeeccccccccchhhhHHHHHHHHHHHHHHHHH
Q 008060          473 GTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQS  510 (579)
Q Consensus       473 ~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~  510 (579)
                      .+....+..+..++++|..+..++..+-.+|-.+|..+
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             -HHHH---------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666778888888888888888888777777766644

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PRK03612 spermidine synthase; Provisional

Probab=93.68  E-value=1.2  Score=48.34  Aligned_cols=50  Identities=20%  Similarity=0.229  Sum_probs=36.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHh
Q 008060          489 RGVCGGIAATANWISNLIVAQSFLSLTQ-AIGTSWTFLIFGVISVAALLFV  538 (579)
Q Consensus       489 ~g~~~gi~~~~~~~g~~i~~~~~g~~~~-~~g~~~~~~~~~~~~~~~~~~~  538 (579)
                      .|...|-...++.+|+++|+++++++.- ..|...+.++.+.+.++.+++.
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4667888899999999999999888764 6787666666666655555443

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=92.60  E-value=1.1  Score=45.40  Aligned_cols=166  Identities=13%  Similarity=0.009  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHH
Q 008060           33 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVG  112 (579)
Q Consensus        33 l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~  112 (579)
                      .+.+.+++++.-...-+..........+++-..  ..+...-.-+-.....+..++.|...|+..|+|++...+.+.-++
T Consensus        29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gns--l~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlS  106 (503)
T KOG2601|consen   29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNS--LLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLS  106 (503)
T ss_pred             eehhhHHHHHhHhhHhHHHHHHHHHHHHHcCce--ehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHH
Confidence            344556666665555555555555555544211  111122222233344566778889999999999988877655443


Q ss_pred             HHHHH------hc------chhhHHHHHHHHHHhhch--hhhhhHhHh--hhhcC----Ccccchhhh---hhhHHHHHH
Q 008060          113 AVIMA------AA------PNPGALITGRVFVGLGVG--MASMTSPLY--ISEAS----PAKIRGALV---STNGFLITS  169 (579)
Q Consensus       113 ~ll~~------~a------~~~~~ll~~R~l~Gig~g--~~~~~~~~~--l~e~~----p~~~R~~~~---~~~~~~~~i  169 (579)
                      .++++      +.      .++..+..+-.+.-.-.+  -....+..+  -.||.    ..+.+....   +.....-..
T Consensus       107 v~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~  186 (503)
T KOG2601|consen  107 VIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQS  186 (503)
T ss_pred             HHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhh
Confidence            33332      22      244444443333222111  111122222  13332    233344444   333334445


Q ss_pred             HHHHHHHHHHHhccCcCcchhHHHHhhHHHHH
Q 008060          170 GQFLSYLINLAFTRAPGTWRWMLGVAGIPALL  201 (579)
Q Consensus       170 G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~  201 (579)
                      -..+.|.+.|.+....+ -|..-.+.++..++
T Consensus       187 tn~Lapv~tg~Iitfvs-l~~~~g~f~~w~~v  217 (503)
T KOG2601|consen  187 TNLLAPVITGLIITFVS-LRASAGTFAAWALV  217 (503)
T ss_pred             hhchhhhhhcccceeec-hhhhhhhhHHHHHH
Confidence            56788999998887665 66654444444444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.55  E-value=2.8  Score=44.49  Aligned_cols=112  Identities=11%  Similarity=0.035  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHH--HHHHHHHHHHHh---------cchhhHHHHHHHHHHhh
Q 008060           69 LLQESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVAD--FLFFVGAVIMAA---------APNPGALITGRVFVGLG  135 (579)
Q Consensus        69 ~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~--~l~~i~~ll~~~---------a~~~~~ll~~R~l~Gig  135 (579)
                      +..-....++.+|-.+|..+..+.. .-++|  ++++.+.  +++.-..++|..         -++-+..++.-++.|+.
T Consensus       307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt  385 (437)
T TIGR00939       307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence            3446677888888888887654431 11222  3333222  233333334432         24566777789999999


Q ss_pred             chhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          136 VGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       136 ~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      .|-....++.+..+..++++|..+-.+...+..+|..+|..++-.+
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888999998888876544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=89.11  E-value=3.2  Score=44.59  Aligned_cols=42  Identities=12%  Similarity=-0.009  Sum_probs=38.0

Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ  516 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~  516 (579)
                      +.|.+++|+...++..+..++....+++|.++++.+...+.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999888887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=88.84  E-value=8.3  Score=40.84  Aligned_cols=42  Identities=17%  Similarity=0.073  Sum_probs=36.6

Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ  516 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~  516 (579)
                      +.|...+|+...++..+.+++.+..++++..++..+..++.+
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            557889999999999999999999999999998888877765

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=87.40  E-value=6.9  Score=40.53  Aligned_cols=127  Identities=15%  Similarity=0.131  Sum_probs=83.2

Q ss_pred             hhhhhhhhcccccc-hhhHHHHHHHH-HHHHHHHHHHhHhhhhccccchHHHHHHHH-HHHHHHHH-H------Hhcchh
Q 008060           53 ALLYIRDDFKSVDR-KTLLQESIVSM-AVAGAIIGAAIGGWMNDRFGRRTSILVADF-LFFVGAVI-M------AAAPNP  122 (579)
Q Consensus        53 ~lp~i~~~~~~s~~-~~~~~g~l~s~-~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~-l~~i~~ll-~------~~a~~~  122 (579)
                      +.|.+..+-..+.. +.++.-.+..+ +.+.-.+|.+.+.++-+.= ||+..+..+. ...+-.+. |      .+-.+-
T Consensus       265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~  343 (406)
T KOG1479|consen  265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESD  343 (406)
T ss_pred             ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCc
Confidence            44555444332222 34555667777 8888889877777776654 4444333322 22222222 1      224567


Q ss_pred             hHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHH
Q 008060          123 GALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA  180 (579)
Q Consensus       123 ~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~  180 (579)
                      +.+++.-.+.|+..|-.....+.+..+-.+++++..+-.+.......|.+.|..++..
T Consensus       344 ~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l  401 (406)
T KOG1479|consen  344 GWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV  401 (406)
T ss_pred             hHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            7888899999999998889999999999999887777777777777777777776643

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=87.07  E-value=1.2  Score=43.93  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      |.+.-.-.+...+..+......||+.--.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+ .+
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss-~Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSS-RY  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhc-cC
Confidence            55555666677777788888888874322234556677788889999999999999999999988877766655433 33


Q ss_pred             CcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC-cchhHHHHhhHHHHHHHHH-HHhccC
Q 008060          152 PAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG-TWRWMLGVAGIPALLQFIL-MLLLPE  211 (579)
Q Consensus       152 p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~-~Wr~~f~i~~i~~l~~~i~-~~~lpe  211 (579)
                      ++.    ..+.+..+.+....+|..--..+.+..+ +-|...++...+-++..+. ++.+++
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            332    2233333334444444444444444221 3566666666554444444 444443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=86.36  E-value=0.54  Score=48.92  Aligned_cols=133  Identities=14%  Similarity=-0.065  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      .|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+...+.+.....|-..|+-.+....+....++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            45667788888899999999999999777766666667777778888888888888888888655544444333332221


Q ss_pred             ---------------------Cc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHH
Q 008060          152 ---------------------PA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFI  204 (579)
Q Consensus       152 ---------------------p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i  204 (579)
                                           .+  .-+|...|+.+....+-+++.....|.+.+..|+-+.+-...+.++++...
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~~  490 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIGG  490 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHHH
Confidence                                 11  123566677788888888877777777777766666666655555444433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.69  E-value=11  Score=36.70  Aligned_cols=133  Identities=14%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccch--HHHHHHHHHHHHHHHHHHh----cc---hhhHHHHHHHHHHhhchhhhhh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRR--TSILVADFLFFVGAVIMAA----AP---NPGALITGRVFVGLGVGMASMT  142 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr--~vl~~~~~l~~i~~ll~~~----a~---~~~~ll~~R~l~Gig~g~~~~~  142 (579)
                      |.+.+.+++..++|+-+..++..|-..|  ..+.+..++.++...+...    ++   +...-+++..+.-.+.|..+|.
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPS  364 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPS  364 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchH
Confidence            8999999999999999998887765544  3444544444443333222    22   2233355556666778889999


Q ss_pred             HhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          143 SPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       143 ~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      .+.+=+++.|.+.|+..+.++..-.++-..++-..- ...+...+-|..|-++.....+..+.
T Consensus       365 imkmRsqyIPEearstimNfFRvPLnifvClvLynl-h~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  365 IMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNL-HVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHhhCCHHHHhhhhhheechhhHhhhhhheec-ccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999999887665544333221110 00111113567777777655554443

>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length

Probab=82.74  E-value=42  Score=31.43  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=19.1

Q ss_pred             hcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcC
Q 008060          149 EASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG  186 (579)
Q Consensus       149 e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~  186 (579)
                      +++..++|.+.-.......-++..+|..+++.+.+..+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~f~~Ga~~ga~l~~~~~  190 (209)
T PF06912_consen  153 RYLRGKDRALRRALRYLLIILSFFIGAILGALLYRRLG  190 (209)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44333433233333444555556666666666665544

The function of this family is unknown although a few members are thought to be membrane proteins.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=82.49  E-value=24  Score=34.24  Aligned_cols=100  Identities=14%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHH----HHHHHHHHHHHHHHh-c----chhhHHHHHHHHHHhhchhhhh
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSIL----VADFLFFVGAVIMAA-A----PNPGALITGRVFVGLGVGMASM  141 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~----~~~~l~~i~~ll~~~-a----~~~~~ll~~R~l~Gig~g~~~~  141 (579)
                      ....-++..|..+|....|+.... +.||+.+.    .+.+++.+..+.... .    .++..+++.-|+.|++.=+..+
T Consensus       144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence            445556666777777788888764 45665543    234444444444211 2    1466778888888887655555


Q ss_pred             hHhHhhhhcCCcccchhhhhhhHHHHHHHHH
Q 008060          142 TSPLYISEASPAKIRGALVSTNGFLITSGQF  172 (579)
Q Consensus       142 ~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~  172 (579)
                      ....+-.|+ +...+.+.--.++..+++|-+
T Consensus       224 ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~  253 (267)
T PF07672_consen  224 VILNLPHEY-KGYNPKKIGIQFGLIWGFGYI  253 (267)
T ss_pred             HHhcChhhh-cCCCcceehhHHHHHHHHHHH
Confidence            544444443 222222333334445555544

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=82.23  E-value=29  Score=35.60  Aligned_cols=47  Identities=6%  Similarity=-0.021  Sum_probs=36.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHH
Q 008060          491 VCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLF  537 (579)
Q Consensus       491 ~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  537 (579)
                      ...+.....-...+.+.|.+.|.+.+..+.+..-.++++..+++.-.
T Consensus       175 ~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm~~  221 (503)
T KOG2601|consen  175 NMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSMWV  221 (503)
T ss_pred             hcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHHHH
Confidence            33456666667788999999999999888888777888877775544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.22  E-value=4.8  Score=42.67  Aligned_cols=66  Identities=21%  Similarity=0.163  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--hCCCchhH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHH
Q 008060          284 QVFQQFVGINTVMYYSPTIVQL--SGFASNRT--ALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISL  349 (579)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  349 (579)
                      .++.|.........-.|.+++.  .+.+-.++  -.+...++.+=-+-+.++=...++|+||||..++-.
T Consensus         8 LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~   77 (544)
T PF13000_consen    8 LYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPI   77 (544)
T ss_pred             HHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHH
Confidence            3444555555444456888876  22221111  122333444322333344455667899999876544

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	579
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-45
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-10

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  178 bits (452), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 120/357 (33%), Positives = 179/357 (50%), Gaps = 55/357 (15%)
Query: 23  SWKNPYVLRLAFSAGIGGLLFGYDTGVISGAL-----LYIRDDFKSVDRKTLLQESIVSM 77
            + + Y+  +   A +GGLLFGYDT VISG +     +++     S      L    V+ 
Sbjct: 4   QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVAS 63
Query: 78  AVXXXXXXXXXXXWMNDRFGRRTSILVADFLFFVGAVIMA------AAPNPG-------- 123
           A+           + ++RFGRR S+ +A  LFF+  V  A       + NP         
Sbjct: 64  ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLA 123
Query: 124 ----ALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINL 179
                 +  R+  G+GVG+ASM SP+YI+E +PA IRG LVS N F I  GQ L Y +N 
Sbjct: 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183
Query: 180 AFTRAPGT-------WRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKV 232
              R+          WR+M     IPALL  +L+  +PESPRWL  +G++E+A+ ILRK+
Sbjct: 184 FIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
Query: 233 YPAHEVETEIRDLKESVDXXXXXXXXXXXXNLVKLLKTRTVRRGLIAGVG-------LQV 285
                    ++++K S+D                    +T  R L+ GVG       L +
Sbjct: 244 MGNTLATQAVQEIKHSLDH-----------------GRKTGGRLLMFGVGVIVIGVMLSI 286
Query: 286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRK 342
           FQQFVGIN V+YY+P + +  G AS   ALL +++   +N   ++++I  +D+ GRK
Sbjct: 287 FQQFVGINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK 342

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Query: 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513
           G +AL+ +  Y+  F+   G   W++ SEI+P   RG    IA  A W++N  V+ +F  
Sbjct: 369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM 428
Query: 514 LTQAIGTSW---------TFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 558
           + +    SW         ++ I+G + V A LF+  FVPETKG  +EE+E + E
Sbjct: 429 MDK---NSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	579
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	1e-05
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 32/159 (20%)

Query: 72  ESIVSMAVAGAIIGAAIG----GWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALIT 127
           E  V   +   ++   +     G ++DR GRR  ILV   +F +  ++     +   LI 
Sbjct: 34  EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIA 93

Query: 128 GRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-- 185
                G+G G+  +         +    R     T           S L N+    +P  
Sbjct: 94  ASAMQGMGTGVGGV--------MARTLPRDLYERT-----QLRHANSLL-NMGILVSPLL 139

Query: 186 -----------GTWRWMLGVAGIPALLQFILMLL-LPES 212
                        WR       +        M   +PE+
Sbjct: 140 APLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 41/305 (13%), Positives = 87/305 (28%), Gaps = 19/305 (6%)

Query: 61  FKSVDRKTLLQESIVSMAVAGAI-IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIM--- 116
           F+     T  Q  ++  A      I     G +  +   +  I+   FL+ +GA +    
Sbjct: 52  FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA 111

Query: 117 AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYL 176
           A   N    + G   +  G+G     +  +++   P       ++      + G  ++ +
Sbjct: 112 AEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVV 171

Query: 177 INLAFTRAPGTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAH 236
              +   +    +    +  +           L  S +  Y          I+  +    
Sbjct: 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM---------IIVAIVLLV 222

Query: 237 EVETEIRDLKESVDKEIEE-EGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTV 295
            +   +            + +  S   +L +L + R  R  ++A    Q           
Sbjct: 223 ALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLA----QFCYVGAQTACW 278

Query: 296 MYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVI-SLSGVIL 354
            Y     V+     +   A      T      G     + I R    K+L   +L  + L
Sbjct: 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338

Query: 355 SLGVL 359
            L   
Sbjct: 339 CLISA 343

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 51/343 (14%), Positives = 107/343 (31%), Gaps = 63/343 (18%)

Query: 64  VDRKTL------LQESIVSMAVAGAI---------IGAAIGGWMNDRFGRRTSILVADFL 108
           + RK        L E   S    G               I G ++DR   R  +     L
Sbjct: 42  LVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101

Query: 109 FFVGAVIMAAAP----NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNG 164
                + M   P    +   +       G   GM        +      K RG +V    
Sbjct: 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIV---S 158

Query: 165 FLITS---GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLLL----PESPRWLY 217
               +   G  +  L+ L        W   L +    A+L  +    +    P+S     
Sbjct: 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP- 217

Query: 218 RKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGL 277
                               +E    D  +  +++ E+E ++++I +  +L  +      
Sbjct: 218 -------------------PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL----- 253

Query: 278 IAGVGLQVFQQFVGINTVMYYSPT-IVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFI 336
           +  + +     ++    ++ +SPT + ++  FA ++++    L        G+++  +  
Sbjct: 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG-IPGTLLCGWMS 312

Query: 337 D---RTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
           D   R  R    V  ++ V ++  V         + +P V  +
Sbjct: 313 DKVFRGNRGATGVFFMTLVTIATIVYWMNP----AGNPTVDMI 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 83/567 (14%), Positives = 164/567 (28%), Gaps = 178/567 (31%)

Query: 56  YIRD-DFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV 114
           ++ + D K V       +SI+S      II +            + ++     LF+    
Sbjct: 29  FVDNFDCKDVQDMP---KSILSKEEIDHIIMS------------KDAVSGTLRLFW---- 69

Query: 115 IMAAAPNPGALITGRVFVG--LGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQ- 171
            + +          + FV   L +    + SP+   +  P+ +    +     L    Q 
Sbjct: 70  TLLSKQEEMV----QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 172 FLSYLIN-----LAFTRA-----PGTWRWMLGVAG-------IPALLQFILMLLLPESPR 214
           F  Y ++     L   +A     P     + GV G       +   L + +   +     
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 215 WLY--RKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT 272
           WL        E    +L+K+   ++++       +     I+    S +  L +LLK++ 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKP 242

Query: 273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN-RTALLLSLVTSGLNAAGSIV 331
               L+  V          +  V   +        F  + +      L+T+       + 
Sbjct: 243 YENCLL--V----------LLNV--QNAKAWN--AFNLSCKI-----LLTTR-FK--QVT 278

Query: 332 SIYFIDRTGRKKLLVISLSGVIL---SLGVLSAVF--------HETTSHSPMVSAVETSH 380
              F+       + +   S  +       +L             E  + +P   ++    
Sbjct: 279 D--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---- 332

Query: 381 FSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDE 440
            +     D    AT D W  + C K ++                  +I +S +  L   E
Sbjct: 333 IAES-IRDG--LATWDNWKHVNCDKLTT------------------IIESS-LNVLEPAE 370

Query: 441 SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN 500
            R+ + R        L+        +F  P         ++ I P               
Sbjct: 371 YRKMFDR--------LS--------VF--P--------PSAHI-P--------------- 388

Query: 501 WISNLIVAQSFLSLTQAIGTSWTFLIFG-VISVAALLFV--LI---FVPETKGLP---IE 551
                         T  +   W  +I   V+ V   L    L+       T  +P   +E
Sbjct: 389 --------------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 552 EIEKMLELRALHFKFWEKRSLPDKSQS 578
              K+    ALH    +  ++P    S
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDS 461

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 20/188 (10%), Positives = 58/188 (30%), Gaps = 11/188 (5%)

Query: 25  KNPYVLR-LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAI 83
           + P +     +  G+      +D    +    +    F + ++ T +   + +M      
Sbjct: 218 RQPKLWFLSLYVIGVSCTYDVFDQQFAN----FFTSFFATGEQGTRVFGYVTTMGELLNA 273

Query: 84  IGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTS 143
                   + +R G + ++L+A  +  V  +  + A +   ++  +      V    +  
Sbjct: 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333

Query: 144 PLYISEASPAKIRGALVS-----TNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIP 198
             YI+     +    +            +     L+  +  +     G +  +  VA   
Sbjct: 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGF 392

Query: 199 ALLQFILM 206
            L+    +
Sbjct: 393 TLISVFTL 400

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 10/143 (6%)

Query: 73  SIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVGAVIMAAAPNPGALITGRVF 131
           SI+++  +   +   IGG++ DR  G R ++     L  +G +++A      AL    + 
Sbjct: 58  SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIIL 117

Query: 132 VGLGVG-----MASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPG 186
           + +G G     ++++   LY  +    + R A  S   F I  G F++ LI  A   A G
Sbjct: 118 IIIGTGFLKPNVSTLVGTLY--DEHDRR-RDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174

Query: 187 TWRWMLGVAGIPALLQFILMLLL 209
            +     +A I   +  ++    
Sbjct: 175 -YHVAFSLAAIGMFIGLLVYYFG 196

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.95
2xut_A	524	Proton/peptide symporter family protein; transport	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.34
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.32
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.29
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.23
2xut_A	524	Proton/peptide symporter family protein; transport	99.17

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=3.7e-45  Score=392.93  Aligned_cols=443  Identities=37%  Similarity=0.652  Sum_probs=352.7

Q ss_pred             hccCchhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccc-----chhhHHHHHHHHHHHHHHHHHHhHhhhhccc
Q 008060           22 LSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVD-----RKTLLQESIVSMAVAGAIIGAAIGGWMNDRF   96 (579)
Q Consensus        22 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~-----~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~   96 (579)
                      .++++++.+.+.+..+++.++.++|...++..+|.+.++++.+.     ....+.|++.+++.+|..+|++++|+++||+
T Consensus         3 ~~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~   82 (491)
T 4gc0_A            3 TQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF   82 (491)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566777888888889999999999999999999998886432     1223458999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHh------------------cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchh
Q 008060           97 GRRTSILVADFLFFVGAVIMAA------------------APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGA  158 (579)
Q Consensus        97 Grr~vl~~~~~l~~i~~ll~~~------------------a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~  158 (579)
                      |||++++++.+++.++.+++++                  ++|+++++++|+++|++.|+..+....+++|+.|+++|++
T Consensus        83 GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~  162 (491)
T 4gc0_A           83 GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGK  162 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhh
Confidence            9999999999999999999984                  7899999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhccCc-------CcchhHHHHhhHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHh
Q 008060          159 LVSTNGFLITSGQFLSYLINLAFTRAP-------GTWRWMLGVAGIPALLQFILMLLLPESPRWLYRKGREEEAQAILRK  231 (579)
Q Consensus       159 ~~~~~~~~~~iG~~ig~~l~~~l~~~~-------~~Wr~~f~i~~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~  231 (579)
                      ..++.+.+..+|..+++.++..+....       ..||+.+.+..++.++..+..+++||+|+|+..+++.+++.+.+++
T Consensus       163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHH
Confidence            999999999999999999887765432       1488888888888888888888999999999999999999888877


Q ss_pred             hcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch
Q 008060          232 VYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASN  311 (579)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (579)
                      .......+++..+..+....+      .+.......++.+    ..........+.++.+.+.+.+|.|.+.+..+.. .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  311 (491)
T 4gc0_A          243 IMGNTLATQAVQEIKHSLDHG------RKTGGRLLMFGVG----VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS-T  311 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH------HHHTTHHHHSCCT----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC-H
T ss_pred             hcCCchhHHHHHHHHHHHHhh------hhhhhHHHHhccc----HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC-c
Confidence            654332222222111111111      0111112222222    2334455566677788888888998888877764 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcc
Q 008060          312 RTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSS  391 (579)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (579)
                      ...........+..+++.+++++++||+|||+.++.+...+.++.+.+........                        
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~------------------------  367 (491)
T 4gc0_A          312 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA------------------------  367 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc------------------------
Confidence            45566667778889999999999999999999999998888888777765543211                        


Q ss_pred             ccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccC
Q 008060          392 AATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPG  471 (579)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (579)
                                                                                   ..+..++.+.++..++..+
T Consensus       368 -------------------------------------------------------------~~~~~~~~~~~~~~~~~~~  386 (491)
T 4gc0_A          368 -------------------------------------------------------------PGIVALLSMLFYVAAFAMS  386 (491)
T ss_dssp             -------------------------------------------------------------CHHHHHHHHHHHHHHHHTT
T ss_pred             -------------------------------------------------------------chHHHHHHHHHHHHHHHhH
Confidence                                                                         2445566677777788888


Q ss_pred             cccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH------hcccchhhHHHHHHHHHHHHHhhhhccCC
Q 008060          472 MGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQ------AIGTSWTFLIFGVISVAALLFVLIFVPET  545 (579)
Q Consensus       472 ~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (579)
                      ..++.+.+.+|++|++.|++++|+.++.+++++++++.+++.+.+      ..+...+|++++++++++.++.++++|||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            888889999999999999999999999999999999988876643      34566789999999999999999999999


Q ss_pred             CCCChHHHHHHHHhh
Q 008060          546 KGLPIEEIEKMLELR  560 (579)
Q Consensus       546 ~~~~~~~~~~~~~~~  560 (579)
                      |++++||+|+.+|++
T Consensus       467 kg~tLeei~~~f~~~  481 (491)
T 4gc0_A          467 KGKTLEELEALWEPE  481 (491)
T ss_dssp             TTCCHHHHGGGTC--
T ss_pred             CCCCHHHHHHHhCCC
Confidence            999999999887665

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.3e-37  Score=329.95  Aligned_cols=402  Identities=13%  Similarity=0.074  Sum_probs=306.3

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++.+++.+..+++..+..+++...+++.+|.+.+++ .+..+.   |++.+++.++..++++++|+++||+|||++++++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH---HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            345677888888899999999999999999999999 888888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh----cchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          106 DFLFFVGAVIMAA----APNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       106 ~~l~~i~~ll~~~----a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      .++.+++.+++++    +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|.+++|.+++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                      .+..++||+.|++.+++.++..++ ++++||+|+....+...+.           .+..+  .+    .+++.+++...+
T Consensus       179 ~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~--~~----~~~~~~~~~~~~  241 (451)
T 1pw4_A          179 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYP--DD----YNEKAEQELTAK  241 (451)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC-------------------CCT
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------ccccc--cc----chhhhhcccccc
Confidence            765534999999999887766555 6778888754321111100           00000  00    000000111111


Q ss_pred             hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 008060          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-  339 (579)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-  339 (579)
                      +...++.+++|.++...+..     +...........+.|.|+++..+.+....+++.....++.+++.++.+++.||+ 
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  316 (451)
T 1pw4_A          242 QIFMQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  316 (451)
T ss_dssp             HHHHHHTSSCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22246677777765444333     233445667778899999885555777788888889999999999999999999 


Q ss_pred             -CCchhhHHHHHHHH-HHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCC
Q 008060          340 -GRKKLLVISLSGVI-LSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASH  417 (579)
Q Consensus       340 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (579)
                       +||+.+..+..+.. ++.+++....                                                      
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  342 (451)
T 1pw4_A          317 RGNRGATGVFFMTLVTIATIVYWMNP------------------------------------------------------  342 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSCC------------------------------------------------------
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHhc------------------------------------------------------
Confidence             99988777666555 4433322110                                                      


Q ss_pred             CCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHH
Q 008060          418 SNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAA  497 (579)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~  497 (579)
                                                       .+..+...+...+.+. ...+..+....+..|.+|++.||+++|+.+
T Consensus       343 ---------------------------------~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  388 (451)
T 1pw4_A          343 ---------------------------------AGNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTG  388 (451)
T ss_dssp             ---------------------------------TTCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             ---------------------------------ccCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence                                             0012222333333322 222334455688999999999999999999


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhh
Q 008060          498 TANWI-SNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIF  541 (579)
Q Consensus       498 ~~~~~-g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  541 (579)
                      ...++ |.+++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus       389 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          389 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999 999999999999999999999999999888887776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=8.9e-36  Score=314.75  Aligned_cols=376  Identities=14%  Similarity=0.075  Sum_probs=296.9

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      +++++..+..+++..+..+++....++..|.+.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA---GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            3445666677778888889999999999999999999999888   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhc
Q 008060          106 DFLFFVGAVIM---AAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFT  182 (579)
Q Consensus       106 ~~l~~i~~ll~---~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~  182 (579)
                      .++.+++.+++   +++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -cCcCc------------------------chhHHHHhhHHHHHHHHHHHhc--cCChhHHHhcCCHHHHHHHHHhhcCC
Q 008060          183 -RAPGT------------------------WRWMLGVAGIPALLQFILMLLL--PESPRWLYRKGREEEAQAILRKVYPA  235 (579)
Q Consensus       183 -~~~~~------------------------Wr~~f~i~~i~~l~~~i~~~~l--pesp~~l~~~~~~~~~~~~~~~~~~~  235 (579)
                       +..+.                        ||+.|++.+++.++..+++++.  ||+++..                   
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------------------  238 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN-------------------  238 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC-------------------
T ss_pred             hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-------------------
Confidence             55544                        9999988887766665554443  4443200                   


Q ss_pred             CchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCchhHH
Q 008060          236 HEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTI-VQLSGFASNRTA  314 (579)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  314 (579)
                                      +++++++..+.+.++++|+|.++...+....     ..........+.|.| +++..+.+...+
T Consensus       239 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~  297 (438)
T 3o7q_A          239 ----------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFA  297 (438)
T ss_dssp             ----------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             ----------------cccccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHH
Confidence                            0001112234567788888887765544322     233456667788999 888756577788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccc
Q 008060          315 LLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAAT  394 (579)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (579)
                      ++......++.+++.++.++++||++||+.+..+..+..++.+++.....                              
T Consensus       298 ~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  347 (438)
T 3o7q_A          298 ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG------------------------------  347 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC------------------------------
Confidence            88888889999999999999999999999998888777776665544211                              


Q ss_pred             cccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccc
Q 008060          395 ADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGT  474 (579)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (579)
                                                                                  ...++.+.+...+. ....+
T Consensus       348 ------------------------------------------------------------~~~~~~~~~~g~~~-~~~~~  366 (438)
T 3o7q_A          348 ------------------------------------------------------------HVGLIALTLCSAFM-SIQYP  366 (438)
T ss_dssp             ------------------------------------------------------------HHHHHHHHHHHHHH-TTHHH
T ss_pred             ------------------------------------------------------------cHHHHHHHHHHHHH-HHHHH
Confidence                                                                        11133333333333 33456


Q ss_pred             ccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHHH
Q 008060          475 APWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIG-TSWTFLIFGVISVAALLF  537 (579)
Q Consensus       475 ~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~  537 (579)
                      ..+++..|.+|++ ++.+.++.. .+.+|++++|.+.|.+.+..| ++..|.+.+++.++..++
T Consensus       367 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          367 TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            6678888999877 888888877 677999999999999999999 998888776665555443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.98  E-value=7.5e-31  Score=281.52  Aligned_cols=419  Identities=15%  Similarity=0.087  Sum_probs=263.4

Q ss_pred             HHHHhhhhhhhh-hhhhhhhhhh-----cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhcc-ccchHHHHHHHHHHHH
Q 008060           39 GGLLFGYDTGVI-SGALLYIRDD-----FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDR-FGRRTSILVADFLFFV  111 (579)
Q Consensus        39 ~~~~~~~~~~~~-~~~lp~i~~~-----~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr-~Grr~vl~~~~~l~~i  111 (579)
                      ..+...+..... ....+.+.++     +|.+..+.   +++.+++.++..++++++|+++|| +|||++++.+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~   97 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA---ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIML   97 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            333333333333 3333445555     99988888   999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCccc--chhhhhhhHHHHHHHHHHHHHHHHHhccCcCcch
Q 008060          112 GAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKI--RGALVSTNGFLITSGQFLSYLINLAFTRAPGTWR  189 (579)
Q Consensus       112 ~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~--R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr  189 (579)
                      +.+++++++|++.++++|+++|++.+...+...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+..+ ||
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~  176 (491)
T 4aps_A           98 GHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YH  176 (491)
T ss_dssp             HHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence            99999999999999999999999999999999999999999988  7778888999999999999999999988776 99


Q ss_pred             hHHHHhhHHHHHHHHHHHhc-cCChh----HHHhcCCHHHHHHHHHh----------------hcCCCchhhhHHHhhhh
Q 008060          190 WMLGVAGIPALLQFILMLLL-PESPR----WLYRKGREEEAQAILRK----------------VYPAHEVETEIRDLKES  248 (579)
Q Consensus       190 ~~f~i~~i~~l~~~i~~~~l-pesp~----~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~  248 (579)
                      +.|++.++..++..+.+++. ++..+    ....+.+.++.++..+.                .....+.+.........
T Consensus       177 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (491)
T 4aps_A          177 VAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIV  256 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHH
Confidence            99999887766665554332 22110    00011122222222221                00000000000000000


Q ss_pred             -hh---hhHHhhccchhhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Q 008060          249 -VD---KEIEEEGSSEKINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGL  324 (579)
Q Consensus       249 -~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (579)
                       ..   .......+..+..  +..+++... ...  .....+..+..+.....+.|.+.++....+....+.......++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (491)
T 4aps_A          257 AIAIPVFYFAWMISSVKVT--STEHLRVVS-YIP--LFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLF  331 (491)
T ss_dssp             HHHHHHHHHHHHC--------------CTT-HHH--HHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHH
T ss_pred             HHHHHHHHHHHHhhccccc--HHHHHHHHH-HHH--HHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHH
Confidence             00   0000000000000  011111111 111  11111222223344455667787765554434455666777778


Q ss_pred             HHHHHHHHHHHHhhcCCchhhH-----HHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCcccccccccc
Q 008060          325 NAAGSIVSIYFIDRTGRKKLLV-----ISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWD  399 (579)
Q Consensus       325 ~~~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (579)
                      .+++.++.+++.||++||+...     .+..+..++++++..........                              
T Consensus       332 ~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  381 (491)
T 4aps_A          332 IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTS------------------------------  381 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------
Confidence            8889999999999999987654     56666666655554432211000                              


Q ss_pred             ccccccCCCCCCCcccCCCCCCCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCccccccee
Q 008060          400 CMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIV  479 (579)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (579)
                                                                        +....+...+...+...+. ....+..+.+
T Consensus       382 --------------------------------------------------~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~  410 (491)
T 4aps_A          382 --------------------------------------------------GKVSPLWLVGSWALVILGE-MLISPVGLSV  410 (491)
T ss_dssp             --------------------------------------------------TTCCTHHHHHHHHHHHHHH-HTTTTHHHHH
T ss_pred             --------------------------------------------------CCccHHHHHHHHHHHHHHH-HHHhHHHHHH
Confidence                                                              0001222233333333332 2335666789


Q ss_pred             eccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCC
Q 008060          480 NSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       480 ~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      ..|.+|++.||+++|+.+...++|.+++|.+.+.+.+ .++...|.+.+++++++.++.+++.++.+++
T Consensus       411 ~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          411 TTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887765 4677788888888888888777666655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=3.3e-32  Score=281.59  Aligned_cols=358  Identities=15%  Similarity=0.082  Sum_probs=274.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH
Q 008060           34 FSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA  113 (579)
Q Consensus        34 ~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~  113 (579)
                      ..+++..+...++...+.+.+|.+.+++|.+..+.   +++.+++.++..++++++|+++||+|||++++.+.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~---g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   79 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV---QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT   79 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH---HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence            45667778888889999999999999999988888   999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHH
Q 008060          114 VIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLG  193 (579)
Q Consensus       114 ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~  193 (579)
                      ++.+++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++++.+..+ ||+.|+
T Consensus        80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~  158 (375)
T 2gfp_A           80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL  158 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988776 999999


Q ss_pred             HhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcch
Q 008060          194 VAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRT  272 (579)
Q Consensus       194 i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (579)
                      +.+++.++..+. .+.+||++++..                                      ++++.+.+.++.+|+|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~  200 (375)
T 2gfp_A          159 FLLVLCAGVTFSMARWMPETRPVDA--------------------------------------PRTRLLTSYKTLFGNSG  200 (375)
T ss_dssp             HHHHHHHHHHCCCCCSSCCCSTTTC--------------------------------------CCCCTTTCSTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcccCCCCc--------------------------------------ccccHHHHHHHHhcCcc
Confidence            988887776664 566788753100                                      00112334566777777


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHH-
Q 008060          273 VRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSG-  351 (579)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-  351 (579)
                      ++...+...     ...........+.|.++++..+.+....+.......++.+++.++.+++.||.++ + +..+... 
T Consensus       201 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~-~~~~~~~~  273 (375)
T 2gfp_A          201 FNCYLLMLI-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-L-MWQSVICC  273 (375)
T ss_dssp             HHHHHHHHH-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-H-HHHHHHHH
T ss_pred             hHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHH
Confidence            765444332     2334556677788888877444466777888888888899999999999999877 2 2222222 


Q ss_pred             HHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCc
Q 008060          352 VILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNS  431 (579)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (579)
                      ...+..++........                                                                
T Consensus       274 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  289 (375)
T 2gfp_A          274 LLAGLLMWIPDWFGVM----------------------------------------------------------------  289 (375)
T ss_dssp             HHTSSSSSHHHHHHHH----------------------------------------------------------------
T ss_pred             HHHHHHHHHHhhhccc----------------------------------------------------------------
Confidence            2222221111110000                                                                


Q ss_pred             ccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHH
Q 008060          432 TVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSF  511 (579)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~  511 (579)
                                           ..+...+...+...+.+. ..+....+..|..| +.||++.|+.+....+|.+++|.+.
T Consensus       290 ---------------------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~  346 (375)
T 2gfp_A          290 ---------------------NVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLS  346 (375)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTC
T ss_pred             ---------------------cHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHH
Confidence                                 012223333333333332 35666788899998 8899999999999999999999999


Q ss_pred             HHHHHhcccchhhHHH
Q 008060          512 LSLTQAIGTSWTFLIF  527 (579)
Q Consensus       512 g~~~~~~g~~~~~~~~  527 (579)
                      |.+.+..++...+.+.
T Consensus       347 g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          347 AMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcccHHHHHH
Confidence            9998887777666553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.95  E-value=6.5e-29  Score=261.11  Aligned_cols=378  Identities=11%  Similarity=0.053  Sum_probs=244.0

Q ss_pred             hhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHH---HHHHh
Q 008060           43 FGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGA---VIMAA  118 (579)
Q Consensus        43 ~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~---ll~~~  118 (579)
                      .........+.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+++++.   ....+
T Consensus        19 ~~~~~~~~~~~~~~~l~~~~g~s~~~~---g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~   95 (417)
T 2cfq_A           19 YFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF   95 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHTTTCCCTTTS---HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444566665 566799998888   999999999999999999999999999999998888775532   11222


Q ss_pred             cchh-hHHHHHHHHHHhhchhhhhhHhHhhhhcCCc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHh
Q 008060          119 APNP-GALITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVA  195 (579)
Q Consensus       119 a~~~-~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~  195 (579)
                      ++.. ..++..+++.|++.+...+.....+.++.++  ++|+...+....+..+|..++|.+++++.+.  +||+.|++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~  173 (417)
T 2cfq_A           96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLG  173 (417)
T ss_dssp             HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHH
Confidence            2221 1234556666666665555444555555443  3457777777777888999999999998764  499999988


Q ss_pred             hHHHHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHhhhcchhhh
Q 008060          196 GIPALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKLLKTRTVRR  275 (579)
Q Consensus       196 ~i~~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (579)
                      +++.++..+.+++.+|+++.   +.+.++           .             ++  .++++....+.++++++|.++.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~-------------~~--~~~~~~~~~~~~~~~~~~~~~~  224 (417)
T 2cfq_A          174 SGCALILAVLLFFAKTDAPS---SATVAN-----------A-------------VG--ANHSAFSLKLALELFRQPKLWF  224 (417)
T ss_dssp             TTTTTTHHHHSCSSCCCCSC---SSCSSS-----------S-------------SS--SCCCCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCccccc---cccccc-----------c-------------cc--cccccccHHHHHHHhcCCchhh
Confidence            77655555544444443210   000000           0             00  0001111234567788887765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHH
Q 008060          276 GLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFA---SNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGV  352 (579)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  352 (579)
                      ..+.....     ...+.....+.|.|+.+....   +....++......++.+++.++.++++||+|||+++..+..+.
T Consensus       225 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~  299 (417)
T 2cfq_A          225 LSLYVIGV-----SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHH-----HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            44332221     112333344567777654321   1233456666677778899999999999999999988777776


Q ss_pred             HHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcc
Q 008060          353 ILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNST  432 (579)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (579)
                      +++.+++... +                                                                    
T Consensus       300 ~~~~~~~~~~-~--------------------------------------------------------------------  310 (417)
T 2cfq_A          300 SVRIIGSSFA-T--------------------------------------------------------------------  310 (417)
T ss_dssp             HHHHHHHTTC-C--------------------------------------------------------------------
T ss_pred             HHHHHHHHHh-c--------------------------------------------------------------------
Confidence            6654443221 0                                                                    


Q ss_pred             cccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHHHHHHHHHH
Q 008060          433 VKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWISNLIVAQSF  511 (579)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g~~i~~~~~  511 (579)
                                          ..+..++...+....+. ...+..+.+.+|.+|++.||++.|+. +..+.+|++++|.+.
T Consensus       311 --------------------~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~  369 (417)
T 2cfq_A          311 --------------------SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             --------------------SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred             --------------------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence                                01111222222222211 11233467899999999999999994 888899999999999


Q ss_pred             HHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCC
Q 008060          512 LSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLP  549 (579)
Q Consensus       512 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (579)
                      |.+.+..|+...|.+.+++++++.++.++..||+++.+
T Consensus       370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            99999889888999999998888887766677655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.94  E-value=5.9e-27  Score=253.35  Aligned_cols=164  Identities=18%  Similarity=0.294  Sum_probs=141.2

Q ss_pred             HHhhhhhhhhhhhhh-hhhhhcc------cccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc-cchHHHHHHHHHHHHH
Q 008060           41 LLFGYDTGVISGALL-YIRDDFK------SVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF-GRRTSILVADFLFFVG  112 (579)
Q Consensus        41 ~~~~~~~~~~~~~lp-~i~~~~~------~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~-Grr~vl~~~~~l~~i~  112 (579)
                      +...+......+.++ .+.+++|      .+..+.   +++.+++.++..++++++|+++||+ |||+++.++.++.+++
T Consensus        22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~---g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~   98 (524)
T 2xut_A           22 ACERFSFYGMRNILTPFLMTALLLSIPEELRGAVA---KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVG   98 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH---HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccccccCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            333333333334444 5677888      888888   9999999999999999999999999 9999999999999999


Q ss_pred             HHHHHhcc-hhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhh---hHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060          113 AVIMAAAP-NPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVST---NGFLITSGQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       113 ~ll~~~a~-~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~---~~~~~~iG~~ig~~l~~~l~~~~~~W  188 (579)
                      .++.++++ +++.+++.|++.|++.+...+...+++.|++|+++|+++.+.   ...+.++|.+++|.+++.+.+..+ |
T Consensus        99 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~  177 (524)
T 2xut_A           99 HAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-A  177 (524)
T ss_dssp             HHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-H
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence            99999999 999999999999999999999999999999999999877666   899999999999999999988776 9


Q ss_pred             hhHHHHhhHHHHHHHHHHHh
Q 008060          189 RWMLGVAGIPALLQFILMLL  208 (579)
Q Consensus       189 r~~f~i~~i~~l~~~i~~~~  208 (579)
                      |+.|++.+++.++..+.+++
T Consensus       178 ~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          178 AVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999988876666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=1.7e-12  Score=136.48  Aligned_cols=170  Identities=18%  Similarity=0.136  Sum_probs=141.2

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhh-cccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccc--cchHHHHHHHHHHH-H
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDD-FKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRF--GRRTSILVADFLFF-V  111 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~-~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~--Grr~vl~~~~~l~~-i  111 (579)
                      +.+..+.............|.+.++ +|.+..+.   +++.+...++..++.++.|+++||+  |||+.+..+..+.. +
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~  333 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI  333 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            3344444444455556666766655 88888777   9999999999999999999999999  99999888877766 6


Q ss_pred             HHHHHHhc--chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcc
Q 008060          112 GAVIMAAA--PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       112 ~~ll~~~a--~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~W  188 (579)
                      +.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|++++++......+ |..++|.+.+.+.+..+ |
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~  412 (451)
T 1pw4_A          334 ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-W  412 (451)
T ss_dssp             HHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-S
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence            66666666  36778888889999999988898899999999999999999999999999 99999999999999887 9


Q ss_pred             hhHHHHhhHHHHHHHHHHHhc
Q 008060          189 RWMLGVAGIPALLQFILMLLL  209 (579)
Q Consensus       189 r~~f~i~~i~~l~~~i~~~~l  209 (579)
                      +..|++.+++.++..++.+++
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          413 DGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999888877777665444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.34  E-value=5.3e-12  Score=131.94  Aligned_cols=141  Identities=12%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      +++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            77888888889999999999999999999999999888888888888888888888888888887777777788999999


Q ss_pred             Ccccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCCh
Q 008060          152 PAKIRGALVST-NGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPESP  213 (579)
Q Consensus       152 p~~~R~~~~~~-~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp  213 (579)
                      |++.|+.+.++ ++....+|.+++|.+++++.+..+ ++..|.+.+++.++..++ +...||.+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999998 478888999999999999988666 888998888877777666 44456553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.32  E-value=4.7e-11  Score=125.01  Aligned_cols=151  Identities=13%  Similarity=-0.005  Sum_probs=123.9

Q ss_pred             hhhhhhhhh-h-hhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHH
Q 008060           49 VISGALLYI-R-DDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALI  126 (579)
Q Consensus        49 ~~~~~lp~i-~-~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll  126 (579)
                      ......|.+ . +.+|.+..+.   +++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++
T Consensus       276 ~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T 3o7q_A          276 ACWSYLIRYAVEEIPGMTAGFA---ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHhhhccCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            333444544 4 4558888777   9999999999999999999999999999999999999999999999888877655


Q ss_pred             HHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH
Q 008060          127 TGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL  205 (579)
Q Consensus       127 ~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~  205 (579)
                      .. ++.|++.+...+...++..|.+|++ |+.+.++.. ...+|..++|.+.+++.+..++++..|++.++..++..+.
T Consensus       353 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          353 AL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            54 8889999999999999999999976 888888777 5669999999999999987766898888766554444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.29  E-value=1.2e-11  Score=131.73  Aligned_cols=167  Identities=13%  Similarity=-0.003  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhHHHHHHHHHHHHHHH
Q 008060          287 QQFVGINTVMYYSPTIVQLS-----GFASNRTALLLSLVTSGLNAAGSIVSIYFIDR-TGRKKLLVISLSGVILSLGVLS  360 (579)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~  360 (579)
                      ....+++....+.+.|+++.     .+.+....+++.....++.+++.++.|+++|| +|||+++..+..+..++.+++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (491)
T 4aps_A           24 WERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            33445666777788888775     55677888899999999999999999999999 8999999999888888877665


Q ss_pred             HHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCcccccccccc
Q 008060          361 AVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDE  440 (579)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (579)
                      ...+                                                                            
T Consensus       104 ~~~~----------------------------------------------------------------------------  107 (491)
T 4aps_A          104 LPFG----------------------------------------------------------------------------  107 (491)
T ss_dssp             SCCS----------------------------------------------------------------------------
T ss_pred             Hhhh----------------------------------------------------------------------------
Confidence            4211                                                                            


Q ss_pred             cccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeecccccccc--chhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008060          441 SREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRF--RGVCGGIAATANWISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~  518 (579)
                                   .+..++..++.+.+. ....+...++++|.+|++.  |+.+.++.+....+|..++|.+.+.+.+..
T Consensus       108 -------------~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  173 (491)
T 4aps_A          108 -------------ASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA  173 (491)
T ss_dssp             -------------TTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             -------------HHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                         122233333333222 2234566789999999988  788888899999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          519 GTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      ||++.|++.++..+++.++.++..+
T Consensus       174 g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          174 GYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            9999999988888777766554433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.24  E-value=2.8e-11  Score=124.22  Aligned_cols=172  Identities=10%  Similarity=0.016  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHhcc
Q 008060          286 FQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHE  365 (579)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (579)
                      +.............|.+.++.+. +..+.++......++..++.++.|+++||+|||+.+..+..+..++.+++....+ 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-   87 (375)
T 2gfp_A           10 AVGQMAQTIYIPAIADMARDLNV-REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS-   87 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSS-TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhhhhHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc-
Confidence            33344455556667777666665 5667788888899999999999999999999999999999988888877766532 


Q ss_pred             cCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccccccc
Q 008060          366 TTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDESREWY  445 (579)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (579)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (375)
T 2gfp_A           88 --------------------------------------------------------------------------------   87 (375)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhH
Q 008060          446 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFL  525 (579)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~~~g~~i~~~~~g~~~~~~g~~~~~~  525 (579)
                              .+..++...+ .+.......+...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.+..||++.|.
T Consensus        88 --------~~~l~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  158 (375)
T 2gfp_A           88 --------LTVLIAASAM-QGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL  158 (375)
T ss_dssp             --------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             --------HHHHHHHHHH-HHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence                    1122222222 2222223345667888999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCC
Q 008060          526 IFGVISVAALLFVLIFVPETKGL  548 (579)
Q Consensus       526 ~~~~~~~~~~~~~~~~~~~~~~~  548 (579)
                      +.+++.++..+..++.+||++++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          159 FLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHCcccCCC
Confidence            99988888877666667776543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.23  E-value=1.7e-10  Score=122.76  Aligned_cols=174  Identities=12%  Similarity=0.049  Sum_probs=121.8

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVI  115 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll  115 (579)
                      .....+........+....+.+.+..+.+....   ........+...++.++.+++.||+|||+.++.+....+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~  358 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIA---LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS  358 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccch---hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence            333334444444555556677777777766665   56666777888899999999999999999999988888877766


Q ss_pred             HHhc-----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHhccCc-----
Q 008060          116 MAAA-----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAP-----  185 (579)
Q Consensus       116 ~~~a-----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~-----  185 (579)
                      .+..     ++...++..-+..+.......+....+.+|.+|.+.|+.++++......+|..+++.+.+.+.+..     
T Consensus       359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~  438 (491)
T 4gc0_A          359 LGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH  438 (491)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5432     222222222222222222345677789999999999999999999999999998888776664321     


Q ss_pred             CcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          186 GTWRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       186 ~~Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      .++.+.|++.++++++..+. ++++|||
T Consensus       439 ~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          439 FHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            02566788888777777665 6889999

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.17  E-value=2.4e-10  Score=122.86  Aligned_cols=166  Identities=12%  Similarity=-0.017  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHhCC------CchhHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhHHHHHHHHHHHHHHHH
Q 008060          289 FVGINTVMYYSPTIVQLSGF------ASNRTALLLSLVTSGLNAAGSIVSIYFIDRT-GRKKLLVISLSGVILSLGVLSA  361 (579)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~  361 (579)
                      ..+++....+++.|+++..+      .+....+++.....++.+++.++.|+++||+ |||+++..+.++..++.+++..
T Consensus        25 ~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~  104 (524)
T 2xut_A           25 RFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI  104 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            33456666778888876555      5777788888889999999999999999999 9999999988888887776665


Q ss_pred             HhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCccccccCccccccccccc
Q 008060          362 VFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPGACLISNSTVKDLCHDES  441 (579)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (579)
                      ...                                                                             
T Consensus       105 ~~~-----------------------------------------------------------------------------  107 (524)
T 2xut_A          105 FEH-----------------------------------------------------------------------------  107 (524)
T ss_dssp             TSS-----------------------------------------------------------------------------
T ss_pred             hcc-----------------------------------------------------------------------------
Confidence            320                                                                             


Q ss_pred             ccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 008060          442 REWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGI---AATANWISNLIVAQSFLSLTQAI  518 (579)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi---~~~~~~~g~~i~~~~~g~~~~~~  518 (579)
                                 ..+..++..++.+. ......+...+++.|.+|++.|+...++   .+....+|.+++|.+.+.+.+..
T Consensus       108 -----------~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (524)
T 2xut_A          108 -----------SVQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF  175 (524)
T ss_dssp             -----------CHHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred             -----------cHHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                       01222333333332 2233456667899999999999876666   88899999999999999999989


Q ss_pred             ccchhhHHHHHHHHHHHHHhhhhcc
Q 008060          519 GTSWTFLIFGVISVAALLFVLIFVP  543 (579)
Q Consensus       519 g~~~~~~~~~~~~~~~~~~~~~~~~  543 (579)
                      ||++.|++.+++.+++.++.++..+
T Consensus       176 g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999988887777665544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	579
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-15
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	6e-06
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	5e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	6e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	1e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 76.3 bits (186), Expect = 2e-15
 Identities = 44/353 (12%), Positives = 100/353 (28%), Gaps = 29/353 (8%)

Query: 28  YVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAA 87
              ++      G   +       + A+ Y+ +   S           +S           
Sbjct: 22  LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGF----ALSGISIAYGFSKF 77

Query: 88  IGGWMNDRFGRRTSILVADFLFFVGAVIM----AAAPNPGALITGRVFVGLGVGMASMTS 143
           I G ++DR   R  +     L     + M     A  +   +       G   GM     
Sbjct: 78  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137

Query: 144 PLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQF 203
              +      K RG +VS        G  +  L+ L        W   L +    A+L  
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197

Query: 204 ILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKIN 263
           +    +             EE +                 D  +  +++ E+E ++++I 
Sbjct: 198 LFAFAMMRDTPQSCGLPPIEEYK----------------NDYPDDYNEKAEQELTAKQIF 241

Query: 264 LVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSG 323
           +  +L  + +    IA         ++    ++ +SPT ++     +   +     +   
Sbjct: 242 MQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 296

Query: 324 LNAAGSIVSIYFIDRTGRKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAV 376
               G+++  +  D+  R       +  + L        +     +  +    
Sbjct: 297 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 13/105 (12%), Positives = 38/105 (36%), Gaps = 1/105 (0%)

Query: 454 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS 513
                +   + I F   G      +   E+ P +  G   G      ++   + A + + 
Sbjct: 342 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG 401

Query: 514 -LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 557
                 G    F++    S+ A++ +++ +   K    + +++++
Sbjct: 402 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 446

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 5/155 (3%)

Query: 74  IVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAA-----APNPGALITG 128
              +     I G  + GWM+D+  R        F   +  +         A NP   +  
Sbjct: 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

Query: 129 RVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW 188
            + +G  +    M   L+  E +P K  G      G     G  ++    + +T     W
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409

Query: 189 RWMLGVAGIPALLQFILMLLLPESPRWLYRKGREE 223
                V    ++L  IL++++    +  + +  +E
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.4 bits (116), Expect = 6e-07
 Identities = 24/212 (11%), Positives = 50/212 (23%), Gaps = 11/212 (5%)

Query: 25  KNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAII 84
           KN               + G          +++ D        T +   I +     +++
Sbjct: 5   KNTNFWMFGLFFFFYFFIMGAYFPFFP---IWLHDINHISKSDTGI---IFAAISLFSLL 58

Query: 85  GAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSP 144
              + G ++D+ G R  +L       V             L    +   +  G+      
Sbjct: 59  FQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCF 118

Query: 145 LYISEASPAKIRGALVSTNGFLITSGQFLSYLINLA-----FTRAPGTWRWMLGVAGIPA 199
              + A  A I      +N     +  F      L                    +G   
Sbjct: 119 NAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCAL 178

Query: 200 LLQFILMLLLPESPRWLYRKGREEEAQAILRK 231
           +L  +L     ++P             +    
Sbjct: 179 ILAVLLFFAKTDAPSSATVANAVGANHSAFSL 210

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 9/107 (8%), Positives = 39/107 (36%), Gaps = 2/107 (1%)

Query: 449 CPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRG-VCGGIAATANWISNLIV 507
             +      ++   L++      +      + +  + +RF   +          ++ + +
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYI-TSQFEVRFSATIYLVCFCFFKQLAMIFM 365

Query: 508 AQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIE 554
           +    ++ ++IG    +L+ G++++   L  +  +     L +   +
Sbjct: 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	579
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.49
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.23

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.8e-38  Score=327.53  Aligned_cols=406  Identities=13%  Similarity=0.075  Sum_probs=300.0

Q ss_pred             chhhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHH
Q 008060           26 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVA  105 (579)
Q Consensus        26 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~  105 (579)
                      ++++|.++..++++++..++++..++.+.|.+. |+|.+..+.   |++.+++.+++.++++++|+++||+|||+++.++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~---g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL---GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH---HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            456888888899999999999999999888776 589999998   9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc----chhhHHHHHHHHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHHHHHHHHHHHHHh
Q 008060          106 DFLFFVGAVIMAAA----PNPGALITGRVFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITSGQFLSYLINLAF  181 (579)
Q Consensus       106 ~~l~~i~~ll~~~a----~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~iG~~ig~~l~~~l  181 (579)
                      .++.+++.++++++    ++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99999999998876    47889999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccCcCcchhHHHHhhHHHHHHHHH-HHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccch
Q 008060          182 TRAPGTWRWMLGVAGIPALLQFIL-MLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSE  260 (579)
Q Consensus       182 ~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (579)
                      ....++||+.|++.+++.++..++ +++.+|+|+........+.                 .++..+...+..+++....
T Consensus       176 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  238 (447)
T d1pw4a_         176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------KNDYPDDYNEKAEQELTAK  238 (447)
T ss_dssp             HHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------CCC-------------CCT
T ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-----------------hhhcccchhhccccccchh
Confidence            776656999999998877776666 5556666542211111100                 0000000001111122222


Q ss_pred             hhhHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008060          261 KINLVKLLKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSGFASNRTALLLSLVTSGLNAAGSIVSIYFIDRTG  340 (579)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~  340 (579)
                      +...++.++++.++......     ++.....+....+.|.++++..+.+....+.......+..+++.++.|++.||++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  313 (447)
T d1pw4a_         239 QIFMQYVLPNKLLWYIAIAN-----VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF  313 (447)
T ss_dssp             HHHHHHTSSCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHcCchHHHHHHHh-----hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcc
Confidence            33455566666665433332     3334455667778899988877778888888889999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCC
Q 008060          341 RKKLLVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNK  420 (579)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (579)
                      |++..........+....+.......                                                      
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------  339 (447)
T d1pw4a_         314 RGNRGATGVFFMTLVTIATIVYWMNP------------------------------------------------------  339 (447)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTSCC------------------------------------------------------
T ss_pred             ccccccccchhHHHHHHHHHHHHhcc------------------------------------------------------
Confidence            88765544444333333332221110                                                      


Q ss_pred             CCCccccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHHHHHH
Q 008060          421 LFPGACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATAN  500 (579)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~~~~~  500 (579)
                                                    ....+...+..++ .++...+..+..+.+..|.+|++.||++.|+.++.+
T Consensus       340 ------------------------------~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  388 (447)
T d1pw4a_         340 ------------------------------AGNPTVDMICMIV-IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG  388 (447)
T ss_dssp             ------------------------------TTCHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred             ------------------------------cccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence                                          1112222333222 223333334566788899999999999999999988


Q ss_pred             HHH-HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhc
Q 008060          501 WIS-NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFV  542 (579)
Q Consensus       501 ~~g-~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  542 (579)
                      +++ .+++|.+.|.+.|..|+...|++.+++++++.++.+++.
T Consensus       389 ~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         389 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            875 566899999999999999999998888888877765543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-27  Score=243.82  Aligned_cols=385  Identities=11%  Similarity=0.043  Sum_probs=254.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhh-hhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHH
Q 008060           36 AGIGGLLFGYDTGVISGALLY-IRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAV  114 (579)
Q Consensus        36 ~~l~~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~l  114 (579)
                      +.+..+...+......+.+|. +.+++|.+..+.   |++.+++.++..++++++|+++||+|||++++++..+..++..
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~---g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~   88 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT---GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFA   88 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            334445555566667777776 677899998888   9999999999999999999999999999999999999999888


Q ss_pred             HHHhcchhhHH----HHHHHHHHhhchhhhhhHhHhhhhcCCc--ccchhhhhhhHHHHHHHHHHHHHHHHHhccCcCcc
Q 008060          115 IMAAAPNPGAL----ITGRVFVGLGVGMASMTSPLYISEASPA--KIRGALVSTNGFLITSGQFLSYLINLAFTRAPGTW  188 (579)
Q Consensus       115 l~~~a~~~~~l----l~~R~l~Gig~g~~~~~~~~~l~e~~p~--~~R~~~~~~~~~~~~iG~~ig~~l~~~l~~~~~~W  188 (579)
                      +..+..+....    ++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+.  +|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~  166 (417)
T d1pv7a_          89 PFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NN  166 (417)
T ss_dssp             HHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH--CH
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc--cc
Confidence            88877665443    4455555555555555554444444332  3456677778888899999999999998876  35


Q ss_pred             hhHHHHhhHH-HHHHHHHHHhccCChhHHHhcCCHHHHHHHHHhhcCCCchhhhHHHhhhhhhhhHHhhccchhhhHHHh
Q 008060          189 RWMLGVAGIP-ALLQFILMLLLPESPRWLYRKGREEEAQAILRKVYPAHEVETEIRDLKESVDKEIEEEGSSEKINLVKL  267 (579)
Q Consensus       189 r~~f~i~~i~-~l~~~i~~~~lpesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (579)
                      +..+...... .+...+.++..+|+|+...   +.+                           ++++..++.......+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---------------------------~~~~~~~~~~~~~~~~~  216 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSSAT---VAN---------------------------AVGANHSAFSLKLALEL  216 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSSSC---SSH---------------------------HHHSCCCCCCHHHHHHH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccchh---hhh---------------------------hhhhhcccccccccccc
Confidence            5555555544 4444444666666653110   000                           00111112222333444


Q ss_pred             hhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q 008060          268 LKTRTVRRGLIAGVGLQVFQQFVGINTVMYYSPTIVQLSG---FASNRTALLLSLVTSGLNAAGSIVSIYFIDRTGRKKL  344 (579)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~  344 (579)
                      ++.+..+...........     .........+.+.....   ..+....+.......++..++..+.+++.||.++|+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~  291 (417)
T d1pv7a_         217 FRQPKLWFLSLYVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA  291 (417)
T ss_dssp             TTSSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH
T ss_pred             cccccccchhhhhHHHHH-----HHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc
Confidence            444444333332222211     11122222222222211   1233445566667777788999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccccccccccCCCCCCCCccccccccccccccccCCCCCCCcccCCCCCCCCc
Q 008060          345 LVISLSGVILSLGVLSAVFHETTSHSPMVSAVETSHFSNLTCPDYSSAATADRWDCMKCLKASSPDCGFCASHSNKLFPG  424 (579)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (579)
                      +..+..+..++.+++....+                                                            
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------  311 (417)
T d1pv7a_         292 LLLAGTIMSVRIIGSSFATS------------------------------------------------------------  311 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC------------------------------------------------------------
T ss_pred             hhhhHHHHHHhhhccccccc------------------------------------------------------------
Confidence            98888888777766554311                                                            


Q ss_pred             cccccCcccccccccccccccccCCCCCcchHHHHHHHHHHHhhccCcccccceeeccccccccchhhhHHH-HHHHHHH
Q 008060          425 ACLISNSTVKDLCHDESREWYTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIA-ATANWIS  503 (579)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~gi~-~~~~~~g  503 (579)
                                                   .+...+...+...+.+ ...+...++..|.+|++.|+++.|+. +....+|
T Consensus       312 -----------------------------~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  361 (417)
T d1pv7a_         312 -----------------------------ALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLA  361 (417)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHH
T ss_pred             -----------------------------cchhhHHHHHHHHHHH-HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence                                         2233333333333333 23456678899999999999999985 5567799


Q ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhhhhccCCCCCCh
Q 008060          504 NLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPI  550 (579)
Q Consensus       504 ~~i~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (579)
                      .+++|.+.|.+.|..|++.+|++.++++++..++..+.+++++..+.
T Consensus       362 ~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (417)
T d1pv7a_         362 MIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence            99999999999999999999999999999888887777776665554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=8.4e-14  Score=140.82  Aligned_cols=140  Identities=12%  Similarity=0.103  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhchhhhhhHhHhhhhcC
Q 008060           72 ESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFVGAVIMAAAPNPGALITGRVFVGLGVGMASMTSPLYISEAS  151 (579)
Q Consensus        72 g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i~~ll~~~a~~~~~ll~~R~l~Gig~g~~~~~~~~~l~e~~  151 (579)
                      +...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+...+++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            78888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccccchhhhhhh-HHHHHHHHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHH-HHhccCC
Q 008060          152 PAKIRGALVSTN-GFLITSGQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFIL-MLLLPES  212 (579)
Q Consensus       152 p~~~R~~~~~~~-~~~~~iG~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~-~~~lpes  212 (579)
                      |+++|+++.++. +....+|..++|.+++++.+..+ |++.|++.+++.++..++ .+.++++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999975 56778999999999999999887 999999998877776666 4555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=5.6e-11  Score=121.86  Aligned_cols=150  Identities=19%  Similarity=0.197  Sum_probs=116.4

Q ss_pred             hhhhhhcccccchhhHHHHHHHHHHHHHHHHHHhHhhhhccccchHHHHHHHHHHHH---HHHHHHh--cchhhHHHHHH
Q 008060           55 LYIRDDFKSVDRKTLLQESIVSMAVAGAIIGAAIGGWMNDRFGRRTSILVADFLFFV---GAVIMAA--APNPGALITGR  129 (579)
Q Consensus        55 p~i~~~~~~s~~~~~~~g~l~s~~~lg~~i~~l~~G~lsDr~Grr~vl~~~~~l~~i---~~ll~~~--a~~~~~ll~~R  129 (579)
                      ..+.+.++.+..+.   ++..+...++..++.++.|+++||++||+..........+   +.++...  ..+.+..++.-
T Consensus       274 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (447)
T d1pw4a_         274 TYLKEVKHFALDKS---SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICM  350 (447)
T ss_dssp             HHBTTBSCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHH
T ss_pred             hhcccccccccchh---hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            34556677877777   8999999999999999999999999987654433333222   2222222  35677778888


Q ss_pred             HHHHhhchhhhhhHhHhhhhcCCcccchhhhhhhHHHHHH-HHHHHHHHHHHhccCcCcchhHHHHhhHHHHHHHHHHHh
Q 008060          130 VFVGLGVGMASMTSPLYISEASPAKIRGALVSTNGFLITS-GQFLSYLINLAFTRAPGTWRWMLGVAGIPALLQFILMLL  208 (579)
Q Consensus       130 ~l~Gig~g~~~~~~~~~l~e~~p~~~R~~~~~~~~~~~~i-G~~ig~~l~~~l~~~~~~Wr~~f~i~~i~~l~~~i~~~~  208 (579)
                      ++.|++.+...+....+..|.+|++.|++++|+.+....+ |.+++|.+.+++.+..+ |+..|++.+...++..++..+
T Consensus       351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         351 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            8899998888888999999999999999999998877766 56778999999999887 999998888776666665433