Citrus Sinensis ID: 008065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
Protein Sequence
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRREQYFLDIL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVtkardgsrsqldevTKAKDGLRSEIENSAHMLVTGIEKIsgkvsnfknfsagglprsqkytglpaVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIvddgnldqsglseslflpqetdmeENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSkrmsvdpssktNELFKVAENGLREAGIDFKFSKllsdgkvpvsddkanameTEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRREQYFLDIL
Flexible Loop (DISEMBL)
masedgdavlsdvegeidvqtssdedfsvERFREVLAELNRERQAreaaensatelsekfnRLKAlahesikrrdestrqrdealrekeeilrsndklsteiaevniakdevvkqldevtkardgsrsqldevtkakdglrseiensAHMLVTGIEKISGKVSNFKNFSagglprsqkytgLPAVVYGVIKRTNEIVEELVGqidataksrndvREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDlvqkksrevkslneavgqlvkekeHIVSLLRSalskrmsvdpssktnELFKVAENGLREAGIDFKfskllsdgkvpvsDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELeekerianesvEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRREQYFLDIL
Low Complexity Region (SEG)
MASEDGDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSkihdqvddiikivddGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMkrieeleekeriANESVEGLMLDIAAAEEEISRWKaaaeqeaaagraveqeFVAQVCFLSCLRREQYFLDIL
Disordered region (IsUnstruct)
****************************************************************************************************************************************************HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA****************FEIAIEVSELEATI************************************ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNL*********************RASLAGMESIYQLTRIVVEKTRDLV****************LV****HIVSL*********************KVAENGLREAGIDFKFSKLL********************EIYNLAGALENIVKASQLEIVELRH*********************************************GLMLDIAAAEEEISRWKAAA***AAAGRAVEQEFVAQVCFLSCLRREQYFLDI*
Disordered Region (DISOPRED)
******D****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************L***
Disordered Region (DISEMBL)
**********SDVEGEIDVQTSSDEDFSVERFREVLAELNRE*************LSEKFNRLKALAHES***************REKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE******************KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA************TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW*************VEQEFVAQVCFLSCLRREQYFLDIL
Disordered Region (DISPRO)
*****GDAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLS**********ANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRREQYFLDIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASEDGDAVLSDVEGEIDVQTSSDEDFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHESIKRxxxxxxxxxxxxxxxxxxxxxxxxxxxxIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVxxxxxxxxxxxxxxxxxxxxxISGLREEVAKKSSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGRAVEQEFVAQVCFLSCLRREQYFLDIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	579	2.2.26 [Sep-21-2011]
Q5XVA8	480	Uncharacterized protein A	no	no	0.414	0.5	0.271	2e-09

>sp|Q5XVA8|Y3905_ARATH Uncharacterized protein At3g49055 OS=Arabidopsis thaliana GN=At3g49055 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 128/265 (48%), Gaps = 25/265 (9%)

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL D  +YV  + D++  +I+ +++ N+           P+E +    +       +SI 
Sbjct: 110 LLSDIADYVRSMEDRLSKLIRCLNEENV-----------PEE-ERGRKLETKEYNSKSIL 157

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK-TN 412
           +L + VV K     +   ++   L+ +V  L +E   I  LLR+AL ++ + +   K  N
Sbjct: 158 ELVKEVVTKLETFQESTKKKKMELSRSVEFLEEENRDINVLLRAALFEKQTAEKQLKEMN 217

Query: 413 E-----LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           +     L ++A  GL+  G  F   +      V  S +  N    EE+    +  A+E  
Sbjct: 218 DQKGLALLQIAGRGLQRIGFGFGLGE-----SVEESSETGNIANEEEEN--GVVIAIEKT 270

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           +K  + E+ +L+ S+EE R E   L++  E QA++L+     I +L+ +E+   ++VE L
Sbjct: 271 MKKLRQEVSQLKISLEESRLEEVGLRKVTEEQAQKLAENTVYINKLQNQEKFLAQNVEEL 330

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAG 552
           +  I  AE E+SRW+ A E E  AG
Sbjct: 331 VKAIREAESEVSRWREACELEVEAG 355

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
359473118	696	PREDICTED: uncharacterized protein At3g4	0.965	0.803	0.718	0.0
296081381	765	unnamed protein product [Vitis vinifera]	0.905	0.684	0.701	0.0
147817262	730	hypothetical protein VITISV_030267 [Viti	0.944	0.749	0.646	0.0
449494601	694	PREDICTED: uncharacterized LOC101212666	0.960	0.801	0.670	0.0
449463814	694	PREDICTED: uncharacterized protein LOC10	0.960	0.801	0.668	0.0
255548010	684	Paramyosin, putative [Ricinus communis]	0.956	0.809	0.668	0.0
224107739	673	predicted protein [Populus trichocarpa]	0.930	0.800	0.676	0.0
356525423	661	PREDICTED: uncharacterized protein At3g4	0.910	0.797	0.623	0.0
356512652	661	PREDICTED: uncharacterized protein At3g4	0.910	0.797	0.611	0.0
224100127	521	predicted protein [Populus trichocarpa]	0.853	0.948	0.679	0.0

>gi|359473118|ref|XP_002285440.2| PREDICTED: uncharacterized protein At3g49055-like [Vitis vinifera]

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/590 (71%), Positives = 493/590 (83%), Gaps = 31/590 (5%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK+S E+AE    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDKVSGELAEAIKLKDEVLKQRD 126

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 127 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 179

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 180 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 239

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 240 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 299

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 300 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 359

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+R
Sbjct: 360 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRR 419

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ G
Sbjct: 420 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTG 479

Query: 463 ALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANE 522
           ALE+IVKASQLEI+EL+HSV+ELRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANE
Sbjct: 480 ALEHIVKASQLEIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANE 539

Query: 523 SVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           SVEGLM+DIAAAEEEI+RWK AAEQEAAAGRAVEQEFV+Q   LS +R+E
Sbjct: 540 SVEGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFVSQ---LSAIRQE 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081381|emb|CBI16814.3| unnamed protein product [Vitis vinifera]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/579 (70%), Positives = 465/579 (80%), Gaps = 55/579 (9%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 122 EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 181

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEALREKEE+LRSNDK              V+KQ D
Sbjct: 182 VAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDK--------------VLKQRD 227

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 228 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 280

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 281 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 340

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES----HRP 293
           GLREE+                   ++AE E    EL+Q+V+EY+ KL NLES     R 
Sbjct: 341 GLREEI-------------------QLAENEMS--ELKQIVSEYDLKLGNLESIMESQRH 379

Query: 294 LLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIY 353
           LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENIRASLAGMESIY
Sbjct: 380 LLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENIRASLAGMESIY 439

Query: 354 QLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
           +LTRIV EK R+L++ +SRE KSLNE V +LVKEKE I S LRSALS+RM++DPSSK  E
Sbjct: 440 ELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRRMALDPSSKMKE 499

Query: 414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQL 473
           LF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+YN+ GALE+IVKASQL
Sbjct: 500 LFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTGALEHIVKASQL 559

Query: 474 EIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAA 533
           EI+EL+HSV+ELRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANESVEGLM+DIAA
Sbjct: 560 EIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANESVEGLMMDIAA 619

Query: 534 AEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           AEEEI+RWK AAEQEAAAGRAVEQEFV+Q   LS +R+E
Sbjct: 620 AEEEITRWKVAAEQEAAAGRAVEQEFVSQ---LSAIRQE 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817262|emb|CAN66327.1| hypothetical protein VITISV_030267 [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/636 (64%), Positives = 478/636 (75%), Gaps = 89/636 (13%)

Query: 4   EDGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELS 57
           ED DAVLSDVEG+      I ++  S ED SVERFRE+LAE++RERQAREAAENS +EL 
Sbjct: 7   EDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELL 66

Query: 58  EKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD 117
             FNRLK+LAHE+IK+RDESTRQRDEAL            LS E+ E    KDEV+KQ D
Sbjct: 67  VAFNRLKSLAHEAIKKRDESTRQRDEAL------------LSGELXEAIKLKDEVLKQRD 114

Query: 118 EVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ 177
           E+ K       QLDE  KA++  RSEIE SA MLVTGIEKISGKVSNFKNF+AGGLPRSQ
Sbjct: 115 EIAK-------QLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQ 167

Query: 178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATIS 237
           KYTGLPA+ YGVIKRTNEIVEELV Q+DAT KSRND REQME RN+EIAIEVS+LEATIS
Sbjct: 168 KYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATIS 227

Query: 238 GLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYEDKLK 286
           GLREEV+KK+S +EN+EKS+ EKD K++++E           ++  EL+Q+V+EY+ KL 
Sbjct: 228 GLREEVSKKTSVVENVEKSMAEKDAKISDMEREMSEKIQLAENEMSELKQIVSEYDLKLG 287

Query: 287 NLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENI 342
           NLES     R LL DQLN VSKIHD++ D+I+IVDD  LDQS +SESLFLPQ TDMEENI
Sbjct: 288 NLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENI 347

Query: 343 RASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKR 402
           RASLAGMESIY+LTRIV EK R+L++ +SRE K LNE V +LVKEKE I S LRSALS+R
Sbjct: 348 RASLAGMESIYELTRIVGEKIRNLMEDQSREAKXLNETVTRLVKEKEQIGSFLRSALSRR 407

Query: 403 MSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAG 462
           M++DPSSK  ELF+VAENGLREAGI+FKFS LL DGKV  S DKA  +ETEEDE+ N+ G
Sbjct: 408 MALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELXNMTG 467

Query: 463 ALENIVKASQLEIVELRHSVEE-------------------------------------- 484
           ALE+IVKASQLEI+EL+HSV+E                                      
Sbjct: 468 ALEHIVKASQLEIIELQHSVDELREKRKRRWLQLDLVRICWQFHGVPCQCYWTWIDQAFL 527

Query: 485 --------LRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEE 536
                   LRAESSLLKEH+EAQAKEL+HR +RIEELEEKER+ANESVEGLM+DIAAAEE
Sbjct: 528 CYMYCFAGLRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANESVEGLMMDIAAAEE 587

Query: 537 EISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           EI+RWK AAEQEAAAGRAVEQEFV+Q   LS +R+E
Sbjct: 588 EITRWKVAAEQEAAAGRAVEQEFVSQ---LSAIRQE 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494601|ref|XP_004159594.1| PREDICTED: uncharacterized LOC101212666 [Cucumis sativus]

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/585 (67%), Positives = 473/585 (80%), Gaps = 29/585 (4%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DEVTK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEVTK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519
           LAGALENIVKASQ+EI+ELRHS+EELRAES +LKE LE+Q+KEL  R  +I+ELEEKER+
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAESVVLKERLESQSKELKLRSLQIQELEEKERV 532

Query: 520 ANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVC 564
           ANESVEGLM+D+ AAEEEI RWK AAEQEAAAG+AVEQEF+AQ+ 
Sbjct: 533 ANESVEGLMMDVTAAEEEIIRWKVAAEQEAAAGKAVEQEFLAQIS 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463814|ref|XP_004149626.1| PREDICTED: uncharacterized protein LOC101212666 [Cucumis sativus]

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/585 (66%), Positives = 473/585 (80%), Gaps = 29/585 (4%)

Query: 1   MAS---EDGDAVLSDVEGE---IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSAT 54
           MAS   ED D VLSDVEG+   I +Q  S E+ +VERFRE+LAE +RERQ+REAAENS +
Sbjct: 1   MASGLDEDADVVLSDVEGDEHPITIQNPSPEEITVERFREILAERDRERQSREAAENSKS 60

Query: 55  ELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVK 114
           EL   FNRLKALAHE+IK+RDE  RQRDEALREKEE L+ N+K+S E+AE N  +DE +K
Sbjct: 61  ELQVSFNRLKALAHEAIKKRDECGRQRDEALREKEEALKLNEKVSAELAEANRQRDEALK 120

Query: 115 QLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP 174
             DE+TK       + DE+ K +D LRSEI N++HMLVTGI+KIS KVS+FKNF+AGGLP
Sbjct: 121 LRDEITK-------EFDEILKDRDTLRSEIGNASHMLVTGIDKISAKVSSFKNFTAGGLP 173

Query: 175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEA 234
           RSQKYTGLPAV YGVIKRTNEI+EELV QID T KSRN+ REQME RN+EIAIEVS+LEA
Sbjct: 174 RSQKYTGLPAVAYGVIKRTNEIIEELVRQIDTTTKSRNETREQMELRNYEIAIEVSQLEA 233

Query: 235 TISGLREEVAKKSSFIENLEKSLIEKDEKVAE-----------IESQGLELRQLVNEYED 283
           TISGL++EV+KK+S IE+LE ++IEKD+K+ E            E +  +LRQLV EY+D
Sbjct: 234 TISGLKDEVSKKTSVIEDLENTIIEKDKKICENEVDLVGKLRRAEDEASDLRQLVQEYDD 293

Query: 284 KLKNL----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDME 339
           KL++L    ES RPLLVDQL  +SKIHDQ+ DIIKIVD  ++D S  SESLFLP+ETDME
Sbjct: 294 KLRDLESKMESQRPLLVDQLGLISKIHDQIYDIIKIVDVSDVDHSEFSESLFLPRETDME 353

Query: 340 ENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSAL 399
           EN+RASLAGMESIY L ++V++KTR+L+++K RE K+LNE V QL+KEKEHI  LLR+AL
Sbjct: 354 ENVRASLAGMESIYALAKLVMDKTRNLIEEKIRESKNLNETVAQLLKEKEHIGYLLRTAL 413

Query: 400 SKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYN 459
           SKRM+ DPSSK N+LF+VAENGLREAGIDFKFSKLL + K   + D   A++  EDEI+ 
Sbjct: 414 SKRMTSDPSSKANQLFEVAENGLREAGIDFKFSKLLGEEKFSTTRDNRKALDA-EDEIFT 472

Query: 460 LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519
           LAGALENIVKASQ+EI+ELRHS+EELRAES +LKE LE+Q+KEL  R  +I+ELEEKER+
Sbjct: 473 LAGALENIVKASQIEIIELRHSLEELRAESVVLKERLESQSKELKLRSLQIQELEEKERV 532

Query: 520 ANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVC 564
           ANESVEGLM+D+ AAEEEI RWK AAEQEAAAG+AVEQEF+AQ+ 
Sbjct: 533 ANESVEGLMMDVTAAEEEIIRWKVAAEQEAAAGKAVEQEFLAQIS 577

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548010|ref|XP_002515062.1| Paramyosin, putative [Ricinus communis] gi|223546113|gb|EEF47616.1| Paramyosin, putative [Ricinus communis]

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/594 (66%), Positives = 476/594 (80%), Gaps = 40/594 (6%)

Query: 1   MASEDGD---AVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSA 53
           MAS  GD   AVLSDVEG+    I ++T S ED SVE++RE+LAEL+RER AREAAE S 
Sbjct: 1   MASGPGDENDAVLSDVEGDDPLPIVIRTPSLEDISVEKYRELLAELDRERIAREAAETSK 60

Query: 54  TELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVV 113
           +EL   FNRLKALAHE+IK+RDE  RQRDEALR+KEE L+  +++S E++++N  +DE+V
Sbjct: 61  SELQVSFNRLKALAHEAIKKRDECARQRDEALRDKEEALKEKERISVELSDLNKQRDEIV 120

Query: 114 KQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGL 173
           KQ DEV K               K+GL+SEIE+S HML++GIEKIS KVSNFKNFSA GL
Sbjct: 121 KQFDEVVKV--------------KEGLQSEIESSRHMLISGIEKISNKVSNFKNFSALGL 166

Query: 174 PRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELE 233
           PRS KY GL AV YGVIKRTNEIVEE++ QID T KSRN+ REQ+EQRN+EIAIEVS+LE
Sbjct: 167 PRSHKYNGLQAVAYGVIKRTNEIVEEMIKQIDVTTKSRNEAREQIEQRNYEIAIEVSQLE 226

Query: 234 ATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE-----------SQGLELRQLVNEYE 282
           A+ISGLR+E A+K S IENL+KSL EK+ KVAE+E            +GLE+++++ EY+
Sbjct: 227 ASISGLRDEAAEKCSVIENLQKSLAEKEGKVAEVERELLEKTHLVEKEGLEMKEVIREYD 286

Query: 283 DKLKNLES----HRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDM 338
           DKL++ ES     RPLLVDQL  V++IHD++ D+IKIVD  +LD S LSESLFLPQ+TDM
Sbjct: 287 DKLRDFESKIELQRPLLVDQLKLVAQIHDRLYDVIKIVDSNHLD-SELSESLFLPQQTDM 345

Query: 339 EENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSA 398
           EEN+RASLAGMESIY+L+RIV EKTRDL+++KS EVK LNE V +LVKEKEHI SLLRSA
Sbjct: 346 EENLRASLAGMESIYELSRIVGEKTRDLLEEKSHEVKVLNEMVARLVKEKEHIGSLLRSA 405

Query: 399 LSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIY 458
           LSKRM +D SSKT+ELF+ AENGL+EAGIDFKFSK++ D K+  S DK      EEDE+Y
Sbjct: 406 LSKRMKLDQSSKTSELFQAAENGLKEAGIDFKFSKVIGDNKISGSQDKGGTPYMEEDEVY 465

Query: 459 NLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKER 518
            LAGALENIVK SQLEI+EL+H+VEELRAE  LLKEH EAQ+KEL +RM RIEELEEKER
Sbjct: 466 TLAGALENIVKVSQLEIIELQHNVEELRAEVHLLKEHAEAQSKELGYRMHRIEELEEKER 525

Query: 519 IANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           +ANESVEGLM+DIAAAEEEI+RWK AAEQEAAAGRAVEQEFVAQ   LS L++E
Sbjct: 526 VANESVEGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFVAQ---LSALKQE 576

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107739|ref|XP_002314584.1| predicted protein [Populus trichocarpa] gi|222863624|gb|EEF00755.1| predicted protein [Populus trichocarpa]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/588 (67%), Positives = 478/588 (81%), Gaps = 49/588 (8%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           +D DAVLSDVEGE    I +++ S ED SVE+FRE+L   +RER AREAAE S +EL   
Sbjct: 7   DDADAVLSDVEGEDPVEIVIKSPSQEDISVEKFRELL---DRERAAREAAETSKSELQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE++K+RDE +RQRDEALREKEE L++N+KLS E+ +VN +K+E+ K+ D+ 
Sbjct: 64  FNRLKALAHEALKKRDECSRQRDEALREKEEALKANEKLSNELIQVNGSKEEIEKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+S+IENS HMLV+GI+KISGK SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSQIENSRHMLVSGIDKISGKFSNFKNFAAAGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
            GL AV +GVIKRTNEIVEELV QID TAKSRND REQ+EQRN+EIAIEVS+LEATISGL
Sbjct: 163 NGLQAVAFGVIKRTNEIVEELVRQIDVTAKSRNDAREQIEQRNYEIAIEVSQLEATISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE-----------LRQLVNEYEDKLKNL 288
           R+EVAKK++ +E+LEKS++EK+ KV+EIE + LE           LR LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLVEDLEKSVVEKEGKVSEIEREMLERKHLVEKEASGLRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHR LL DQLN V+KIH+++ D+IKIVD  +LD S +SESLFLPQ+T++EENIRA
Sbjct: 283 ESKMESHRLLLFDQLNLVAKIHNRLYDVIKIVDSNHLD-SEVSESLFLPQQTEVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY+++RIV EKTRDLV++K+ E K+LNE VG LVKEKEHI SLLRSALSKR+ 
Sbjct: 342 SLAGMESIYEVSRIVAEKTRDLVEEKNHEEKNLNETVGILVKEKEHIGSLLRSALSKRIE 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           + PSSKT+ELF+VAENGLREAGIDFKFSK++ DGK  VS DK    +TE DEIY LAGAL
Sbjct: 402 LHPSSKTSELFQVAENGLREAGIDFKFSKVVGDGK--VSYDKGGLPDTESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           ENIVKASQLEI+EL+HSVEELRAESSLL+E +E QAKELS+RM+R+EELEEKER+ANESV
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAESSLLQEDVEVQAKELSNRMRRVEELEEKERVANESV 519

Query: 525 EGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           EGLM+DIAAAEEEI+RWK AAEQEAAAGRAVEQEF AQ   LS +++E
Sbjct: 520 EGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFAAQ---LSSVKQE 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525423|ref|XP_003531324.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/585 (62%), Positives = 456/585 (77%), Gaps = 58/585 (9%)

Query: 5   DGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSE 58
           D DAVLSDVE +      ++ +  S ED SVE+ R+VLAEL+RERQAR AAEN+ +EL  
Sbjct: 8   DADAVLSDVEDDGGDPIPLETKAPSPEDVSVEKLRDVLAELDRERQARIAAENTKSELQV 67

Query: 59  KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118
            FNRLKALAHE+IK+RDE  RQRD+A+REKEE  +                         
Sbjct: 68  SFNRLKALAHEAIKKRDEFGRQRDDAVREKEETAK------------------------- 102

Query: 119 VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQK 178
                     QL+E  K +D LRSEI NS+HMLVTG+EKIS KVS+F   +A  LPRSQK
Sbjct: 103 ----------QLEETAKERDALRSEIGNSSHMLVTGMEKISAKVSSFAG-NALPLPRSQK 151

Query: 179 YTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISG 238
           YTG+ AV YGVIKR NEIVEEL+ Q +ATAK+RN+ REQMEQRN+EIAIEVS+LEATISG
Sbjct: 152 YTGMAAVAYGVIKRANEIVEELLKQNEATAKARNEAREQMEQRNYEIAIEVSQLEATISG 211

Query: 239 LREEVAKKSSFIENLEKSLIEKDEKVAEI-------ESQGLELRQLVNEYEDKLKNL--- 288
           LR++VAK +S +E+LE+ L  +D+++ E+       +S+ L+L++ V E E+KL NL   
Sbjct: 212 LRDDVAKNASIVEDLERDLAVRDQRLNEVSENLSKEQSEALQLKEFVAECEEKLSNLESR 271

Query: 289 -ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLA 347
            ES RPLL+DQL++VSKIH+Q+ +++KI+DDG    S LSESLF+PQETD+EENIRASLA
Sbjct: 272 MESQRPLLIDQLSFVSKIHNQICNVVKILDDGGT--SELSESLFVPQETDVEENIRASLA 329

Query: 348 GMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           GMESIY+LT+IVV+K +D++++K RE+KSL+E V QLV+EK+ I SLLRSALSKRM+VDP
Sbjct: 330 GMESIYELTKIVVQKAKDVLEEKDREIKSLDETVAQLVREKDQIGSLLRSALSKRMAVDP 389

Query: 408 SSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           SS+ +ELF+ AENGLREAGIDFKFSKLL DGKV  S+DK++  E +EDEIY+LAGALE++
Sbjct: 390 SSRKSELFQAAENGLREAGIDFKFSKLLGDGKVAASNDKSDTTEKQEDEIYSLAGALEDV 449

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           V+ASQLEI+EL+H+V ELRAE SLLK+H+EAQ KEL HRM RIEELEEKER+ANE++EGL
Sbjct: 450 VRASQLEIIELKHTVGELRAELSLLKQHIEAQVKELDHRMHRIEELEEKERVANENIEGL 509

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           M+DIAAAEEEI+RWK AAEQEAAAGR VEQEFVAQ   LS L++E
Sbjct: 510 MMDIAAAEEEINRWKVAAEQEAAAGRGVEQEFVAQ---LSALKQE 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512652|ref|XP_003525032.1| PREDICTED: uncharacterized protein At3g49055-like [Glycine max]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/585 (61%), Positives = 453/585 (77%), Gaps = 58/585 (9%)

Query: 5   DGDAVLSDVEGE------IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSE 58
           D +AVLSDVE +         +  S ED SVE+FRE LAEL+RERQAR AAEN+ +EL  
Sbjct: 8   DANAVLSDVEDDGGDPFPTATKLPSPEDVSVEKFREALAELDRERQARVAAENTKSELQV 67

Query: 59  KFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDE 118
            FNRLKALAHE+IK+RDE  RQRD+A+REKEE                            
Sbjct: 68  SFNRLKALAHEAIKKRDEFGRQRDDAIREKEE---------------------------- 99

Query: 119 VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQK 178
                  + +QL+E  K +D LRSEI NS+HM+VTG+EKIS KVS+F   +A  LPRSQK
Sbjct: 100 -------TATQLEETAKERDALRSEIGNSSHMMVTGMEKISAKVSSFSG-NALPLPRSQK 151

Query: 179 YTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISG 238
           YTG+ AV YGVIKR NEIVEEL+ Q +AT K+RN+ REQMEQRN+EIAIEVS+LEATISG
Sbjct: 152 YTGMAAVAYGVIKRANEIVEELLKQNEATTKARNEAREQMEQRNYEIAIEVSQLEATISG 211

Query: 239 LREEVAKKSSFIENLEKSLIEKDEKVAEI-------ESQGLELRQLVNEYEDKLKNL--- 288
           LR+EVAKK   +E+LE+ L  +D+++ E+       +S+ L+L++ V E E+KL  L   
Sbjct: 212 LRDEVAKKVLTVEDLERDLAVRDQRLNEVSENLSKEQSEALQLKEFVGECEEKLSKLESR 271

Query: 289 -ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLA 347
            ES RPLL+DQL++VSKIH+Q+ ++++I+D G+ ++  LSESLF+PQETD+EENIRASLA
Sbjct: 272 MESQRPLLIDQLSFVSKIHNQICNVVRIIDHGSTEE--LSESLFVPQETDVEENIRASLA 329

Query: 348 GMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDP 407
           GMESIY+LT+IVV+K +D++++K RE+KSL+E + +LV+EK+ I S LRSALSKR++VDP
Sbjct: 330 GMESIYELTKIVVQKAKDVLEEKDREIKSLHETLARLVREKDQIGSFLRSALSKRVAVDP 389

Query: 408 SSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI 467
           SS+ +ELF+ AENGLREAGIDFKFSKLL DGKV  S+DK++  E EEDEIY+LAGALE++
Sbjct: 390 SSRKSELFQAAENGLREAGIDFKFSKLLGDGKVAASNDKSDTTEKEEDEIYSLAGALEDV 449

Query: 468 VKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL 527
           VKASQLEI+EL+H+V ELRAE SLLK+H+EAQAKEL HRM R+EELEEKER+ANE++EGL
Sbjct: 450 VKASQLEIIELKHTVGELRAELSLLKQHVEAQAKELDHRMHRVEELEEKERVANENIEGL 509

Query: 528 MLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCLRRE 572
           M+DIAAAEEEI+RWK AAEQEAAAGR VEQEFVAQ   LS L++E
Sbjct: 510 MMDIAAAEEEINRWKVAAEQEAAAGRGVEQEFVAQ---LSALKQE 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100127|ref|XP_002311753.1| predicted protein [Populus trichocarpa] gi|222851573|gb|EEE89120.1| predicted protein [Populus trichocarpa]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/540 (67%), Positives = 437/540 (80%), Gaps = 46/540 (8%)

Query: 4   EDGDAVLSDVEGE----IDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEK 59
           ED DAVLSDVEG+    I +++ S ED SVE+FRE+L   +RER AREAAE S +E+   
Sbjct: 7   EDADAVLSDVEGDEPVPIVMKSPSQEDISVEKFRELL---DRERAAREAAETSKSEIQVS 63

Query: 60  FNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEV 119
           FNRLKALAHE+IK+RDE +RQRDEA+REKEE L++N+KLS E+ +VN +K+E  K+ D+ 
Sbjct: 64  FNRLKALAHEAIKKRDECSRQRDEAMREKEEALKANEKLSNELIQVNRSKEETQKKFDD- 122

Query: 120 TKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKY 179
                               L+SE E S HMLV+GIEKISGK+SNFKNF+A GLPRSQKY
Sbjct: 123 --------------------LQSETEKSRHMLVSGIEKISGKLSNFKNFAAEGLPRSQKY 162

Query: 180 TGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL 239
           +GLPAV YGVIKRTNEIVEELV QID TAKSRND REQMEQRN+EIAIEVS+LEA ISGL
Sbjct: 163 SGLPAVAYGVIKRTNEIVEELVRQIDVTAKSRNDAREQMEQRNYEIAIEVSQLEAAISGL 222

Query: 240 REEVAKKSSFIENLEKSLIEKDEKVAEIESQGL-----------ELRQLVNEYEDKLKNL 288
           R+EVAKK++ IE LEKS++EK+ KV+EIE + L           E+R LV EY+DKL+NL
Sbjct: 223 RDEVAKKTTLIEGLEKSVVEKEGKVSEIEREMLEKMHLVEKEASEMRDLVGEYDDKLRNL 282

Query: 289 ----ESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRA 344
               ESHRPLL DQLN V+KIHDQ+ D I+IV+  +L+ S +SESLFLPQ+TD+EENIRA
Sbjct: 283 ESKMESHRPLLFDQLNLVAKIHDQLYDAIEIVNTSHLN-SEVSESLFLPQQTDVEENIRA 341

Query: 345 SLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMS 404
           SLAGMESIY L+RIV EKTRDLV++++ EVK+LNE V +L+KEKEHI +LLRSALSKRM 
Sbjct: 342 SLAGMESIYDLSRIVAEKTRDLVEERNHEVKNLNETVDRLMKEKEHIGTLLRSALSKRMK 401

Query: 405 VDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGAL 464
           +DPSSKTNELF+VAENGLREAGIDFKFSK+L DG+  VS DK  ++E E DEIY LAGAL
Sbjct: 402 LDPSSKTNELFQVAENGLREAGIDFKFSKVLGDGE--VSGDKGGSLEAESDEIYTLAGAL 459

Query: 465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESV 524
           ENIVKASQLEI+EL+HSVEELRAESSLLKEH+E QAKELSHR++RIEELEEKER+ANESV
Sbjct: 460 ENIVKASQLEIIELQHSVEELRAESSLLKEHIEIQAKELSHRLRRIEELEEKERVANESV 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	579
TAIR|locus:2024081	678	AT1G24560 "AT1G24560" [Arabido	0.905	0.772	0.516	8.4e-129
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.820	0.299	0.225	7.6e-16
TAIR|locus:2156922	788	ATGRIP [Arabidopsis thaliana (	0.827	0.607	0.227	2.1e-14
WB|WBGene00011696	1205	eea-1 [Caenorhabditis elegans	0.870	0.418	0.223	5.8e-12
WB|WBGene00010306	1133	F59A2.6 [Caenorhabditis elegan	0.846	0.432	0.227	1.1e-10
UNIPROTKB|F1MLU7	1302	KTN1 "Uncharacterized protein"	0.782	0.347	0.220	1.3e-10
DICTYBASE|DDB_G0290503	1492	DDB_G0290503 [Dictyostelium di	0.892	0.346	0.184	2.5e-10
ZFIN|ZDB-GENE-060503-506	1041	si:ch211-250g4.3 "si:ch211-250	0.882	0.490	0.205	3.4e-10
UNIPROTKB|F1NZF5	1940	Gga.27138 "Uncharacterized pro	0.896	0.267	0.202	3.4e-10
UNIPROTKB|E2R200	2684	CENPE "Uncharacterized protein	0.796	0.171	0.213	4.9e-10

TAIR|locus:2024081 AT1G24560 "AT1G24560" [Arabidopsis thaliana (taxid:3702)]

 Score = 1264 (450.0 bits), Expect = 8.4e-129, P = 8.4e-129
 Identities = 281/544 (51%), Positives = 367/544 (67%)

Query:    41 RERQAREAAENSATELSEKFNRLKAL--AHESIKRRDESTRQRDEALREKEEILRSNDKL 98
             ++    EA++   TEL  + +R K    A ES K   + +  R +AL    E ++  D+ 
Sbjct:    25 KDSPREEASDERITELIAELDREKKAREAAESSKSELQVSFNRLKALAV--EAIKKRDES 82

Query:    99 STEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKI 158
               E  E    K+ +  +L+ V K +D    +LDE  +++DGL++EIENS+HMLV+GIEKI
Sbjct:    83 KRERDEALKEKENLTNELENVNKGKDEMSKKLDEALRSRDGLKAEIENSSHMLVSGIEKI 142

Query:   159 SGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQM 218
             SGKVS+FKNFS GGLP+SQKYTGL +V YGVIKRTNEIVEELV QID TAKSRN+ REQM
Sbjct:   143 SGKVSSFKNFSNGGLPKSQKYTGLTSVAYGVIKRTNEIVEELVRQIDTTAKSRNEAREQM 202

Query:   219 EQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE----- 273
             +QRN+EIAIEVS+LE+ IS LR EVA+K+S +++LE+ + EK++++AE+E   LE     
Sbjct:   203 DQRNYEIAIEVSQLESAISNLRLEVAEKASIVDDLERGVSEKEKRIAELEKGNLEKVSLL 262

Query:   274 ------LRQLVNEYEDKLKNLE----SHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQ 323
                   L+QLV+EY+ KLK +E    + RPLL+DQLN VS                + +Q
Sbjct:   263 EGEVVELKQLVDEYDGKLKTMELKMVAQRPLLMDQLNLVSRIHDQLYEVVRIVDGNSSEQ 322

Query:   324 SGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQ 383
             S LSES F+PQET+MEENIRASLAGMESI++LT++V  K + LV++KS E+K+LNE VG 
Sbjct:   323 SDLSESFFMPQETEMEENIRASLAGMESIFELTKVVSGKAQSLVEEKSHELKNLNETVGL 382

Query:   384 LVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVS 443
             LVKEKEHI +LLRSALSKR+  +  S+  ELF+ AENGLR+ G D KF+KLL DGKV  S
Sbjct:   383 LVKEKEHIGTLLRSALSKRVIGEQPSQKRELFQAAENGLRDGGTDSKFAKLLKDGKVQDS 442

Query:   444 -DDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKE 502
               D  +    E++EIY+LA  LENIVKASQLEIVEL+H +E  R E+S L++ L+ Q KE
Sbjct:   443 RSDNTHDHSKEDNEIYSLASTLENIVKASQLEIVELQHLLEASREETSSLRKQLDTQTKE 502

Query:   503 LSHRMXXXXXXXXXXXXANESVEGLMLDIAAAEEEISRWKXXXXXXXXXXXXXXXXFVAQ 562
             L+ RM            ANE+VEGLM DIAAAEEEI+RWK                F +Q
Sbjct:   503 LNQRMRQIEELKEKERIANENVEGLMTDIAAAEEEITRWKVAAEQEAAAGGAVEQDFTSQ 562

Query:   563 VCFL 566
             +  L
Sbjct:   563 LYVL 566

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 7.6e-16, P = 7.6e-16
 Identities = 116/515 (22%), Positives = 231/515 (44%)

Query:    38 ELNRE-RQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEE---ILR 93
             EL+   + A E +   +T++SE  + L+      ++     + +  E L EKE    +L 
Sbjct:   960 ELSESLKAAEEESRTMSTKISETSDELER-TQIMVQELTADSSKLKEQLAEKESKLFLLT 1018

Query:    94 SND-KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV 152
               D K   +I E+      +  +L+ V +AR      L+    +K  +  ++E     +V
Sbjct:  1019 EKDSKSQVQIKELEATVATLELELESV-RARI---IDLETEIASKTTVVEQLEAQNREMV 1074

Query:   153 TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRN 212
               I ++  K    +      L  +QK           I+     ++ L  ++D+ +  + 
Sbjct:  1075 ARISELE-KTMEERGTELSAL--TQKLEDNDKQSSSSIETLTAEIDGLRAELDSMSVQKE 1131

Query:   213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL 272
             +V +QM  ++ E ++++  L+  ++GLR++VA   S    LE  L +K E+++E      
Sbjct:  1132 EVEKQMVCKSEEASVKIKRLDDEVNGLRQQVASLDSQRAELEIQLEKKSEEISEY----- 1186

Query:   273 ELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFL 332
              L Q+ N  E+ +  ++ H  +L +++N +S               G   +S L E L  
Sbjct:  1187 -LSQITNLKEEIINKVKVHESIL-EEINGLSEKIKGRELELETL--GK-QRSELDEELRT 1241

Query:   333 PQETDMEENIRASLAGMESIYQLTRIV--VEKTRDLVQKKSREVKSLNEAVGQLVKEKEH 390
              +E +++ + + ++A  E I  LT ++  ++   D +Q +  E ++  E   Q   E  +
Sbjct:  1242 KKEENVQMHDKINVASSE-IMALTELINNLKNELDSLQVQKSETEAELEREKQEKSELSN 1300

Query:   391 IVSLLRSALSKRMSV-----DPSSKTNELFKVAENGLREAGIDFKFS-KLLSD-GKVPVS 443
              ++ ++ AL ++ +      +   + NELFK  E  L +  +D+K + +LL + GK   S
Sbjct:  1301 QITDVQKALVEQEAAYNTLEEEHKQINELFKETEATLNKVTVDYKEAQRLLEERGKEVTS 1360

Query:   444 DDKA-----NAMETEEDEIYNLAGALENIV-KASQLEIVELRHSVEELRAESSLLKEHLE 497
              D         ME+  +E+      +E ++ K S +E V+LR S ++LR    +L E  E
Sbjct:  1361 RDSTIGVHEETMESLRNELEMKGDEIETLMEKISNIE-VKLRLSNQKLRVTEQVLTEKEE 1419

Query:   498 AQAKELSHRMXXXXXXXXXXXXANESVEGLMLDIA 532
             A  KE +  +             +E+  G++ +IA
Sbjct:  1420 AFRKEEAKHLEEQALLEKNLTMTHETYRGMIKEIA 1454

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

TAIR|locus:2156922 ATGRIP [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 118/518 (22%), Positives = 216/518 (41%)

Query:    16 EIDVQTSS-DEDFSVERFREVLAE--LNRERQAREAAENSATELSEKFNRLKALAHESIK 72
             ++  Q +S   +  VE+   V AE  L   R+A   A+  + E S KF++++    + IK
Sbjct:    86 QLQEQVASLSREIDVEKQTRVAAEQALEHLREAYSEADAKSQEYSSKFSQVEQKLDQEIK 145

Query:    73 RRDES--------TRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
              RDE         TR    A +  +EI +  D L     EVN   +    Q   + +  +
Sbjct:   146 ERDEKYADLDAKFTRLHKRAKQRIQEIQKEKDDLDARFREVNETAERASSQHSSMQQELE 205

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISG----KVSNFKNFSAGGLPRSQKYT 180
              +R Q +E  KA D  R ++ ++ + L   IE++ G    K +  +      L + Q   
Sbjct:   206 RTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKDQILE 265

Query:   181 GLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLR 240
              L   +  V +R    V EL      +AK + ++ E +E +  +   E  +   TIS L+
Sbjct:   266 DLKKQLQAVEERKQIAVTEL------SAKHQKNL-EGLEAQVVDALSERDKAAETISSLQ 318

Query:   241 EEVAKKSSFIENLEKSLIEKDEKV-AEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL 299
               +A+K S I  +E +   +  ++ A  E+   EL  L +E E + +  E+    L  +L
Sbjct:   319 VLLAEKESKIAEMEAAATGEAARLRAAAETLKGELAHLKSENEKEKETWEASCDALKSKL 378

Query:   300 NYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDME---ENIRASLAGMESIYQLT 356
                                    +  +   +   ++ +++   E I   L    S Y++ 
Sbjct:   379 EIAESNYLQAEIEVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINR-LQSEFSSYKIR 437

Query:   357 RIVVEKTRDL---VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNE 413
                + + +D+     K S ++KSL EA+ +  KE  ++VS  R    + +    +S   E
Sbjct:   438 AHALLQKKDMELAAAKDSEQIKSLEEALKEAEKEV-YLVSAERDRAQQDLQSALASLEKE 496

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETE----EDEIYNLAGALENIVK 469
             L + A   L++A    K  ++  D  V  +  +  A E +    E+       AL    +
Sbjct:   497 LEERA-GALKDASEQIKSLEVKLDSTVARNQAEKQAWEEDLRVLEETWRRRCEALTAQNE 555

Query:   470 ASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRM 507
             AS  E +E    +E  +  +  +KE  E+  +EL+ R+
Sbjct:   556 ASPAEGIE--KELENAKLRNKRMKEEHES-VRELADRL 590

GO:0005737 "cytoplasm" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0048193 "Golgi vesicle transport" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

WB|WBGene00011696 eea-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 198 (74.8 bits), Expect = 5.8e-12, P = 5.8e-12
 Identities = 123/551 (22%), Positives = 230/551 (41%)

Query:    23 SDEDFSVERFREVLAELNRE--RQAREAAENS--ATELSEKFNRLKALAH---ESIKRRD 75
             S+ D S+   +E LAE  ++  +   E  E++     L+ + N+L+  +    E I   +
Sbjct:   446 SERDSSINDLKEKLAESEKKATKYKNELKEHADLVENLTLQLNKLQENSKDLMEKISAGE 505

Query:    76 ESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKA-RDGSRSQLDEVT 134
                +   E L E+E++  +N+ L T   +   A  E+  ++ E+ K  RD   S+ D+  
Sbjct:   506 GGAKMAIEQL-EQEKVKLTNE-LQTSSEKTKKASGELEAKISELEKKLRDAEASRTDKEQ 563

Query:   135 KAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLP-----AVVYG- 188
             K K     E E+    L    ++I  K   F           QK T        A+V   
Sbjct:   564 KWKQ----EKESFERKLAEAEDEIKRKGERFVEMEKEMEEERQKATDRTLKLKDALVNSE 619

Query:   189 ----VIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
                  IK+ +E  E++V + DA  +      E   Q+  E      ELEA++S     V+
Sbjct:   620 KNLETIKKESEDREKIVREKDAHLEENKKRIEDAVQKLEEAEKRARELEASVSSRDTTVS 679

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSX 304
              K S +  L+  L E +  + E++ Q   + ++ NE  +K + +E+    + D+  +   
Sbjct:   680 TKESELSELKGKLTESNSFIEELKVQ---VEKVSNEISEKQQEVENLMAEMRDKEAHWKT 736

Query:   305 XXXXXXXXXXXXXXGNLDQSG----LSESLFLPQETDMEENIRASLAGMESIYQLTRIVV 360
                            N + S     + E L   +ET  EE  +  L  ++S  +  +  V
Sbjct:   737 KRDEFEAQMLRNQEDNEEASSTLKSVQEQLMKEKETSGEE--KNQLISVKSQLEELKTEV 794

Query:   361 EKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSL---LRSAL----SKRMSVDPSSKTNE 413
             E+     ++K++E++ L  AV    +E++ + +    LR+      SK  S++ S +  E
Sbjct:   795 ERLIRSEEEKTQEIEKLKSAVTATTQERDELTATSESLRTECENLNSKIQSIEESRRHAE 854

Query:   414 LFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVK---A 470
               K +EN  R      +  K + + +  +   +  A+ET+++EI +L    + +V+    
Sbjct:   855 E-KGSENLERMITEKSRLEKDIEERESTIQSIQ-EALETKDNEIESLK-TTQRVVEDELV 911

Query:   471 SQLEIVELRHS-VEELRAESSLLKEHLEAQAKELSHRMXXXXXXXXXXXXANESVEGLML 529
             S++  +E  +S +EE   E +  K  +E    E +                 E +E L  
Sbjct:   912 SKISHIESFNSRIEEFEKEMASGKRTIERLEAEKAEETEKLVVFTGTQSQKQEELEKLQK 971

Query:   530 DIAAAEEEISR 540
             +I   E  I+R
Sbjct:   972 EIQEKETTIAR 982

GO:0046872 "metal ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IMP

WB|WBGene00010306 F59A2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 186 (70.5 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 125/550 (22%), Positives = 238/550 (43%)

Query:     2 ASEDGDAVLSDVEGEI-DVQTSSDEDFSVERFREVLAELNRERQAREAAENSATE-LSEK 59
             +S+  D +  ++E E+ + Q  S E+       E   E+ R   A     NS TE L +K
Sbjct:   419 SSQKADKI-QELEKELQNAQKRSSEEL------ETANEMVRSLTATLENSNSETEILKQK 471

Query:    60 FNRL-KALA--HESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQL 116
                L K L    ++ K   E       +L EKE+       L T+I ++ + K+E V   
Sbjct:   472 LETLDKELQARQQTEKALTEEINVLTTSLAEKEQQTAQIQNLQTQIYQMEVEKEEKV--- 528

Query:   117 DEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRS 176
              E+ K +    +Q    + A++ LR+EIE     L   +E+   +  N        L   
Sbjct:   529 -ELVKVQLQQAAQSS--SSAEEALRAEIEQLEAKL-KAVEQAKAEALN-------SLLAE 577

Query:   177 QKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI 236
             +++        GV K   E +E +  Q+   A+S + V + +     ++  ++ E+E   
Sbjct:   578 KEHLQAQLHQLGVEKE--EKLEMVKVQLQQAAQSSSSVEQALRAEIEKLEAKLQEIEEEK 635

Query:   237 -SGLREEVAKK---SSFIENLEKSL----IEKDEKVAEIESQGLELRQLVNEYEDKLKNL 288
              + L   +A+K   ++ I+ L+  L    +EK+EK+  ++ Q  +  Q  +  E  L+  
Sbjct:   636 KNALNASLAEKEQQTAQIQELQAQLHQLEVEKEEKLEMVKVQLQQAAQSSSSVEQALR-A 694

Query:   289 ESHRPLLVDQLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESL---FLPQETDMEENIRAS 345
             E  +  L  +L  +                   + S L+E +   F+ +E  + + +R+ 
Sbjct:   695 EIEK--LEAKLQEIEKAKMQNSSKREQKVR---ELSNLNEKMRVEFIAKEKIISD-LRSE 748

Query:   346 LAGMESIYQLTRIVVEKTR-DLVQKKSREVKSLNEAVGQLVKE---KEHIVSLLRSALSK 401
             L+ + +   + +  VEKT+ D  + ++RE ++  +   + ++E   +E     L + +  
Sbjct:   749 LSTISTELVVQKATVEKTKMDFGELETREKRATADRENEKMEEIRLRETFAKELET-MGS 807

Query:   402 RMSVDPSSKTNELFKVAENGLREAGIDFKFS-KLLSDGKVPVSDDKANAMETEED----E 456
              + V  ++  NEL   AE  + +    F+   K   + +   S+ +   +E   +    E
Sbjct:   808 ALEVKETAY-NELKASAEKKIAKLTSQFEEKLKKAQNSQDEASESRFKTLEASAEQAKLE 866

Query:   457 IYNLAGALENIVKASQLEIVELRH---SVEELRAESSLLKEHLEAQAKELSHRMXXXXXX 513
                   ALE ++K+S+ EI EL+    S E+ R+   + KE LE +AKEL+ R+      
Sbjct:   867 SEQKLRALEELLKSSESEIEELKIKEISAEKDRSHWEVEKEMLEGEAKELTDRIEGLEAE 926

Query:   514 XXXXXXANES 523
                   ANE+
Sbjct:   927 VKKLTAANET 936

GO:0000042 "protein targeting to Golgi" evidence=IEA

UNIPROTKB|F1MLU7 KTN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 110/498 (22%), Positives = 213/498 (42%)

Query:    34 EVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILR 93
             E L    ++  ++ AA+ SA+ L+E+ +++ A   + IK+ ++S     + L  KEE L+
Sbjct:   579 EALKAQIQQFHSQIAAQTSASALAEELHKVIAEKDKQIKQTEDSLANEHDHLASKEEELK 638

Query:    94 S----NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAH 149
                  N  L  E+ ++    +E      E+ K +     + D++   ++ L+ EI N   
Sbjct:   639 DIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQKSIHVKDDKIRLLEEQLQCEISNK-- 696

Query:   150 MLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNE---IVEELV--GQI 204
             M    I     K    +      L   Q    +   +   I+  +E    VEEL+  G I
Sbjct:   697 MEEFKILSDQNKALQLEVQKLQTLVSEQPNKDVLEQMERCIQEKDEKLKTVEELLETGLI 756

Query:   205 DATAKSR--NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDE 262
                 K    N +R +    N  +A EV +L+A     + +    +S +E L+K + EKD 
Sbjct:   757 QVATKEEELNAIRTE----NSSLAKEVQDLKAK----QNDQVSFASLVEELKKVIHEKDG 808

Query:   263 KVAEIESQ-GLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSXXXXXXXXXXXXXXX--- 318
             K+  +E     EL ++ N+ E  +++L+     L +++  +                   
Sbjct:   809 KIKSVEELLEAELLKVANK-EKTIQDLKQEIEALKEEIGNIQLEKAQQLSITSQVQELQN 867

Query:   319 ---GNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVK 375
                G  +Q    +++   +E D+    R     ++ + +    +    ++  Q K +E  
Sbjct:   868 LLKGKEEQMNNMKTVLEEKEKDLHNRGRR----LQDLQEENESLKTHVQEFAQHKFQEAC 923

Query:   376 SLN--EAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVA-ENGLREAGID-FKF 431
             S +  E +  ++KEKE+ +  L + L +R S D SSKT  L +V  EN L ++ I+  K 
Sbjct:   924 SASQFEELQIVLKEKENEMKRLETMLKERES-DLSSKTKLLQEVQDENKLFKSQIEELKQ 982

Query:   432 SKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI---VKASQLEIVELRH----SVEE 484
                      P  ++    +   E EI +L   L+++   V+  + +  +LR     ++E 
Sbjct:   983 QNYQQASSFPPHEELLKVISEREKEITDLKNELDSLKDAVEHQRKKNNDLREKNWEAMEA 1042

Query:   485 LRAESSLLKEHLEAQAKE 502
             L +   LL++ +   +KE
Sbjct:  1043 LASTEKLLQDKVNKTSKE 1060

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 103/557 (18%), Positives = 242/557 (43%)

Query:     7 DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRE-RQAREAAENSATELSEKFNRLKA 65
             D+++ + + ++   T S++D S++  +  L E   E  +  E  ++S+ EL  K N  + 
Sbjct:   810 DSIIIENQEKLVQLTKSNQD-SLDELQSKLNEKQNEINELIENNQSSSNELQSKLNEKQN 868

Query:    66 LAHESIKRRDESTRQRDEALREK-EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARD 124
               +  I+    S+ +    L EK +EI     KL+ +  ++N    E+V+  +  +    
Sbjct:   869 EINLLIENNQSSSDELQSKLNEKHQEINELQSKLNEKQNKIN----ELVENNESSSDELQ 924

Query:   125 GSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                 QL +  + K+      E+S       + ++  K++  +N     +  + + + L  
Sbjct:   925 SKLIQLSDQLQEKENQLKSFESSIIERDEKLNQLQSKLNEKQN-EIDQITENNQ-SSLDE 982

Query:   185 VVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVA 244
             +   + ++ NEI + +     +  + ++ + E++ + N E   +++EL  T   L ++  
Sbjct:   983 LQSNLNEKQNEINQLIENNQSSLDELQSKLNEKLNEIN-EKDNKINELIQTNESLSKD-- 1039

Query:   245 KKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE----SHRPLLVDQLN 300
             ++S F ENLE+ L EK+ K+ ++ SQ +++    +E E++L  L+         + +Q N
Sbjct:  1040 QQSKF-ENLEQELEEKNNKILDLNSQIIDVNHQFSEKENELNQLQLKLIEKDQEIENQNN 1098

Query:   301 YVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQET-----DMEE--NIRASLAGMES-- 351
              +                 N + +   E++ L +E      D+E   N+       ++  
Sbjct:  1099 KIIDINNQLNEKEKEININNDNDNNNEENIQLIEELKEKLQDLENELNLEKDTVNEKNDD 1158

Query:   352 IYQLT---RIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPS 408
             I +L    +++ EK  +  Q+ +  +   +E++ ++  +K+ + SL     +  + ++  
Sbjct:  1159 INELKEEIKLISEKLSEKEQELNEMINDYDESLNEINDQKDLVKSLNERLTNAHLKIN-- 1216

Query:   409 SKTNELFKVAENGLRE--AGIDFKFSKLLSDGKVPVSDDKA-NAMETEEDEIYNLAGALE 465
              K NE+  +++ G  E  + ++   ++L     + +   +  + +E +  E Y    +  
Sbjct:  1217 EKDNEIHSLSKEGFNEIQSQLNLITNQLSEKDNLLIEKSQIISDLELQLRESYKERSSSS 1276

Query:   466 NIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMXXXXXXXXXXXXANESVE 525
             ++ +  Q+   +L +S +EL  E   +   L+ + ++L  ++             NE   
Sbjct:  1277 SLHQQQQMISPDLSNSNDELIVEKEEIINELKEKNQQLEQQLQDLCQQFNKNKQENE--- 1333

Query:   526 GLMLDIAAAEEEISRWK 542
                L     EEE   WK
Sbjct:  1334 ---LKCQQLEEENDGWK 1347

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-060503-506 si:ch211-250g4.3 "si:ch211-250g4.3" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 114/555 (20%), Positives = 231/555 (41%)

Query:    13 VEGEIDVQTSSDEDFSVERFREVLAELN---RERQAREAAENSATELSEKFNRLKALAHE 69
             +E + D    + E+   +R+  V  EL    R ++ R+  EN   E+ ++ N ++    +
Sbjct:   495 LEKQKDDTRKAKEEAERKRYEIVTEELEHRARLQRERDELENIRAEM-QRVNDVEKA--K 551

Query:    70 SIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQ 129
              +K ++ES R R+EA +E+E     N ++  E   +N  ++E++++  E+ + +  +   
Sbjct:   552 ILKEKEESIRIREEARQERETTELVNAEIKAEKERLNQRQEEMLRERQEIERIKHETLRA 611

Query:   130 LDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGV 189
              +E+  ++D    E E    M      +I G++ + +      + ++++      V    
Sbjct:   612 KEEIENSQDVTIREYEKMEKMKA----EIQGQIEDIEK-KVEEIQKTKEQMEEAKVELEE 666

Query:   190 IKRTNEIVEELVG-QIDATAKSRND---VREQMEQRNFEIAIEVSELEAT-------ISG 238
              +   E   +LV  +I+     RN+   V+E+ME R  E   E  EL A        +  
Sbjct:   667 EREDLERKRDLVSREIEQAEFLRNEILRVKEEMESRWRETETEEVELRAKTQHELERLEK 726

Query:   239 LREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQ 298
             LREE  +    IE  +  L+   E + +++ +  E + +V    ++ K  E    ++++Q
Sbjct:   727 LREETERSQKNIEESKIELMLWKESLDKLKGEMEEDKHVVIMQMNEAKAKEEQLTMVIEQ 786

Query:   299 LNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRI 358
             L                     LD+     +    Q  +ME+  R      E    L ++
Sbjct:   787 LEIERGEITISREKVKE----ELDEINRMRNELQRQHAEMEDWFRVVNKEKEEA-NLAKL 841

Query:   359 VVEKTRDLVQKK-----SREVKSLNEAVGQ---LVKEKEHIVSLLRSALSKRMSVDPSS- 409
              V +   L++K+      R  + + EA+ Q   + K+ E +  + +     R  ++    
Sbjct:   842 AVHEAEMLLKKQMEESEKRRYEMITEALEQRDEIQKKAEELEQINKEIQRARQELEKMRY 901

Query:   410 -KTNELFKVAENGLRE-AGIDFKFSKLLSDGKVPVSDDKAN-AMETEEDEIYNLAGALEN 466
              +   L K+ E+  +E   ++   S+LL   K     DK    M++E  E+  +   +EN
Sbjct:   902 FEKESLQKMLEDTQQERVFVEQVRSELL---KNKADQDKCLFEMDSERKELEQMRFQVEN 958

Query:   467 IVKASQLEIVEL-RHSVEELRAESSLLKEHLEAQAKELSHRMXXXXXXXXXXXXANESVE 525
               K  +    E+ R+ VE+  A+    KE LE    +L                  E  E
Sbjct:   959 EKKDLEQRRYEMMRYDVEQ-SAQVQRQKEELEKIKSQLVIDTESMNRSRELARQDREKAE 1017

Query:   526 GLMLDIAAAEEEISR 540
              L+++I    E++++
Sbjct:  1018 LLIVEIQEQREDVNK 1032

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 112/553 (20%), Positives = 238/553 (43%)

Query:     4 EDGDAVLSDVEGE-IDVQTSSDE-DFSVERFREVLAELNRERQA-REAAENSATELSEKF 60
             E+    ++D+  +   +QT S E    VE    ++++L+R +QA  +  E     L E+ 
Sbjct:  1269 EEQQRTINDISAQKARLQTESGEYSRQVEEKDALISQLSRGKQAFTQQIEELKRHLEEEI 1328

Query:    61 NRLKALAH--ESIKRRDESTRQRDEALRE-KEEILRSNDKLSTEIAEVNIAKD-EVVKQL 116
                 ALAH  +S +   +  R++ E  +E K E+ R+  K ++E+A+     + + +++ 
Sbjct:  1329 KAKNALAHALQSARHDCDLLREQYEEEQEAKGELQRALSKANSEVAQWRTKYETDAIQRT 1388

Query:   117 DEVTKARDGSRSQLDEVTKAKDGLRSE---IENSAHMLVTGIEKISGKVSNFKNFSAGGL 173
             +E+ +A+     +L +  +  + + S+   +E +   L   +E +   V    N +   L
Sbjct:  1389 EELEEAKKKLAQRLQDAEEHVEAVNSKCASLEKTKQRLQNEVEDLMIDVER-SNAACAAL 1447

Query:   174 PRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAK-SRNDVREQMEQRN-FEIAIEVSE 231
              + QK          ++    +  EE   +++A+ K SR+   E  + +N +E +++  E
Sbjct:  1448 DKKQKNFDK------ILSEWKQKYEETQAELEASQKESRSLSTELFKMKNAYEESLDHLE 1501

Query:   232 -LEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES 290
              L+     L++E++  +  I    K++ E ++   +IE +  EL+  + E E  L++ E 
Sbjct:  1502 TLKRENKNLQQEISDLTEQIAEGGKAIHELEKVKKQIEQEKSELQAALEEAEASLEH-EE 1560

Query:   291 HRPLLVD-QLNYVSXXXXXXXXXXXXXXXGNLDQSGLSESLFLPQETDMEENIRASLAGM 349
              + L V  +LN V                  L ++ L     +    D E   R     +
Sbjct:  1561 GKILRVQLELNQVKSDIDRKIAEKDEEID-QLKRNHLRVVDSMQSTLDAEIRSRNEALRL 1619

Query:   350 ESIYQ--LTRIVVEKTRDLVQKKSREV-KSLNEAVGQLVKEKEHIVSLLRSALSKRMSVD 406
             +   +  L  I ++ +     +++ E  K+L    G L   + H+   LRS    +  V 
Sbjct:  1620 KKKMEGDLNEIEIQLSH--ANRQAAEAQKNLRNTQGVLKDTQIHLDDALRSQEDLKEQVA 1677

Query:   407 PSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALEN 466
                +   L +     LR A    + S+ +++ ++  + ++   + T+   + N    LE+
Sbjct:  1678 MVERRANLLQAEIEELRAALEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLES 1737

Query:   467 IVKASQLEIVELRHSVEELR-AESSLLKEHLEA--QAKELSHRMXXXXXXXXXXXXANES 523
              +  SQ++  E+  +++E R AE    K   +A   A+EL                 +++
Sbjct:  1738 DI--SQIQS-EMEDTIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLDQT 1794

Query:   524 VEGLMLDIAAAEE 536
             V+ L   +  AE+
Sbjct:  1795 VKDLQHRLDEAEQ 1807

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E2R200 CENPE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 105/491 (21%), Positives = 213/491 (43%)

Query:    28 SVERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALRE 87
             +V   +E + E+   +   EA +++   +  +  RL    HE+++     T++RD+ LR 
Sbjct:  1622 TVSETQEKICEMEHLKNQFEAQKSTLENIEMENARLTQRLHENLEEMRSVTKERDD-LRS 1680

Query:    88 KEEILR-SNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN 146
              EE L+   D+L   + E  + +D + KQ +E+  AR   +   + + K + GL SE  +
Sbjct:  1681 IEETLKVERDQLKENLRET-VIRD-LEKQ-EELRIARMHVKEHQETIDKLR-GLVSEKTD 1736

Query:   147 SAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDA 206
                 +   +E  +  +          L + ++      +V   +K   E +++L G +  
Sbjct:  1737 ELSNMQIDLENTNDALKT------QDLEKQEELR----IVCMHVKEHQETIDKLRGLVSE 1786

Query:   207 TAKSRNDVREQMEQRNFEIAIEVSELEAT---ISGLREEVA---KKSSFIENLEKSLIEK 260
                   +++  +E  N ++  ++ +L+A    +  L+E+V+   KK+S IE L+K L  +
Sbjct:  1787 KTDEIANMQMDLENSNAKLQEKIQQLKANEHQLFKLKEDVSETQKKTSEIERLKKQLKGQ 1846

Query:   261 DEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLV---DQLNY-VSXXXXXXXXXXXXX 316
                + +IE + L L Q ++E  +++K++   R  L    DQL   +              
Sbjct:  1847 SLTLDKIEMENLNLAQKLHENLEEMKSVMQERDNLKLERDQLKTNLQETIARDLETQQEL 1906

Query:   317 XXGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKS 376
                 L      E++   +E   E+  + S   ++     ++  ++K  + +QKK  ++  
Sbjct:  1907 KIALLHLKEHQETIDKFRERVSEKTTQIS--NIQKDLNKSKDELQKKIEELQKKELQLLK 1964

Query:   377 LNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTN-ELFKVAENGLREAGIDFKFSKLL 435
             + E V +  K    +  L +   ++ +S+      N +L K     L E  I  K    L
Sbjct:  1965 MKEDVNKTHKNINKMEQLKQQFEAQNLSMQSVEMDNLDLTKKLHKCLEEKRIIAKERDEL 2024

Query:   436 SDGKVPVSDDKANAMETEEDEIYNLAGALENIVK-ASQLEIVELRHSVEELRAESSLLKE 494
                K  +  ++    ET  + I +     + IVK   +L+  E  H  E LR + S +KE
Sbjct:  2025 RRIKESLKMERDQFRETLTEMIASDQQNQKEIVKYEKRLQCNEKHHLTESLREKCSRIKE 2084

Query:   495 HLEAQAKELSH 505
              L+  ++  +H
Sbjct:  2085 LLKRYSEMYNH 2095

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	579
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 71/380 (18%), Positives = 159/380 (41%), Gaps = 30/380 (7%)

Query: 46  REAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEV 105
           +E AE       E   RL+ L  E  K+ ++  RQ ++A R +E      +    E+A +
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQE---LKAELRELELALL 230

Query: 106 NIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLV------------- 152
                E+ K+L+E+ +       +L+E+ +  +    EIE     L              
Sbjct: 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEEL 290

Query: 153 ----TGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
                 IE++ G++S  +          ++       +   I+   E +EE    ++   
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
           +   ++ E  E+   +++  + ELE     LREE+A+  + +  +   L E   ++  +E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 269 SQGLELRQLVNEYEDKLK----NLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQS 324
            +   L + + + +++LK     LE  +  L +    + ++ +Q++++   + +   + +
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 325 GLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL 384
            L E L   +      ++ A L  +E+  + ++ V    R +++     +  +   V +L
Sbjct: 471 ELQEELQ--RLEKELSSLEARLDRLEAEQRASQGV----RAVLEALESGLPGVYGPVAEL 524

Query: 385 VKEKEHIVSLLRSALSKRMS 404
           +K KE   + L +AL  R+ 
Sbjct: 525 IKVKEKYETALEAALGNRLQ 544

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 49/320 (15%), Positives = 126/320 (39%), Gaps = 21/320 (6%)

Query: 33  REVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEIL 92
           R   AEL R R+  E  +   + L  +  R++    E  +   +++R+  E  +E E++ 
Sbjct: 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 93  RSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIEN-SAHML 151
           +  +KL   + E+      + ++++ V        ++++E+ +    L   + +  A + 
Sbjct: 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS 789

Query: 152 VTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSR 211
            + I +I  ++S  +          ++ + + A +  + ++ N +  E         + +
Sbjct: 790 HSRIPEIQAELSKLE----------EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 212 NDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQG 271
               +  EQ    I  E+  L      L EE+ +  + + +LE  L +  ++  E+E+Q 
Sbjct: 840 EQRIDLKEQIK-SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898

Query: 272 LELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLF 331
            EL + + E E +++        L  +L  + +   +++D                    
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG---------EDEEIPEE 949

Query: 332 LPQETDMEENIRASLAGMES 351
                D++  ++     + +
Sbjct: 950 ELSLEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 112/548 (20%), Positives = 216/548 (39%), Gaps = 48/548 (8%)

Query: 29  VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
            E   E+  EL    +  E       EL EK   L+    E  +  +E  ++      E 
Sbjct: 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 89  EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSA 148
             + +    L   +A +    +E+  QL+E+    D    +L E+ +  + L+ E+E+  
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357

Query: 149 HMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATA 208
             L    E++  ++   ++       + +      A +   I   N  +E L  +++   
Sbjct: 358 AEL----EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 209 KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
             R  +++++E+   ++       EA +  L+ E+ +    +E L++ L   +E + E+ 
Sbjct: 414 DRRERLQQEIEELLKKLE------EAELKELQAELEELEEELEELQEELERLEEALEELR 467

Query: 269 SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328
            +  E  Q ++  E +L  L++    L      +    + V  ++K     +     LSE
Sbjct: 468 EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527

Query: 329 SLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEK 388
            + + +    E  I A+L G     +L  +VVE            + +  +A+  L + +
Sbjct: 528 LISVDEG--YEAAIEAALGG-----RLQAVVVEN-----------LNAAKKAIAFLKQNE 569

Query: 389 EHIVSLLRSALSKRMSVDPSS----KTNELFKVAENGLREAGIDFKFSKLLSD--GKVPV 442
              V+ L     K   +  +     K  E F      L +   D K  K LS   G V V
Sbjct: 570 LGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF--DPKLRKALSYLLGGVLV 627

Query: 443 SDDKANAME------------TEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS 490
            DD  NA+E            T + ++    G +      +   I+E R  +EEL  +  
Sbjct: 628 VDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIE 687

Query: 491 LLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAA 550
            L+E +    K L+   K +EELEE+     + +E L   I+A  ++++R +A  EQ   
Sbjct: 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747

Query: 551 AGRAVEQE 558
               + +E
Sbjct: 748 RIAQLSKE 755

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	579
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.02
PRK02224	880	chromosome segregation protein; Provisional	97.95
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.17
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.15
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.74
PHA02562	562	46 endonuclease subunit; Provisional	96.56
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.47
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.92
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	95.65
PRK02224	880	chromosome segregation protein; Provisional	95.5
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.28
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.18
PRK11637	428	AmiB activator; Provisional	95.14
PRK04863	1486	mukB cell division protein MukB; Provisional	95.07
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.9
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	94.55
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.41
PRK03918	880	chromosome segregation protein; Provisional	92.97
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	92.57
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	92.08
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	91.57
PF13514	1111	AAA_27: AAA domain	91.17
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.92
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.85
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	90.28
KOG0996	1293	consensus Structural maintenance of chromosome pro	89.44
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	89.01
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	88.92
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	88.64
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	88.36
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	88.06
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	87.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	86.8
PHA02562	562	46 endonuclease subunit; Provisional	85.67
PRK11637	428	AmiB activator; Provisional	85.38
PF09325	236	Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp	85.23
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	84.76
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.71
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	83.32
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	81.59
PF04065	233	Not3: Not1 N-terminal domain, CCR4-Not complex com	81.38
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	80.31
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	80.11
PF07439	112	DUF1515: Protein of unknown function (DUF1515); In	80.02

>TIGR00606 rad50 rad50

Probab=98.02  E-value=0.068  Score=63.33  Aligned_cols=115  Identities=12%  Similarity=0.191  Sum_probs=79.8

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 008065          194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE  273 (579)
Q Consensus       194 neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~  273 (579)
                      ...+..+-+.++.+.+..+.+....           .++|..++.++.++..+...++...+.+.+ +            
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el-----------~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~------------  631 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKEL-----------ASLEQNKNHINNELESKEEQLSSYEDKLFD-V------------  631 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C------------
Confidence            6667777777777777777766543           667888888888877776666655555541 1            


Q ss_pred             HHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhh--cCCCccccccccccCCCccc
Q 008065          274 LRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIV--DDGNLDQSGLSESLFLPQET  336 (579)
Q Consensus       274 Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~v--dd~k~d~s~lsEs~f~~~et  336 (579)
                        .-++.|+..|..++.........++....+...+...|...  ..++.  -.||...|.+.+.
T Consensus       632 --~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~--C~LC~R~f~~eee  692 (1311)
T TIGR00606       632 --CGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSC--CPVCQRVFQTEAE  692 (1311)
T ss_pred             --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--CCCCCCCCCChhH
Confidence              12346666676666666677777788888888888888888  55554  4789998885554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK02224 chromosome segregation protein; Provisional

Probab=97.95  E-value=0.059  Score=60.24  Aligned_cols=97  Identities=20%  Similarity=0.216  Sum_probs=47.2

Q ss_pred             hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHH-------HHHHHHhhchhhhchhhHHhhhhHHHHHHH
Q 008065          236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLV-------NEYEDKLKNLESHRPLLVDQLNYVSKIHDQ  308 (579)
Q Consensus       236 is~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v-------~e~e~klk~~e~~r~lL~dql~~vs~ihd~  308 (579)
                      +..++.+++...+.++.+...+...+..+..++.+...++..+       ..|+..|..++....-|.+.++-+......
T Consensus       358 ~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~  437 (880)
T PRK02224        358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRT  437 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444444444444444444443333       345555555555555555555555555555


Q ss_pred             HHHHHhhhc---CCCccccccccccCCCc
Q 008065          309 VDDIIKIVD---DGNLDQSGLSESLFLPQ  334 (579)
Q Consensus       309 L~~vi~~vd---d~k~d~s~lsEs~f~~~  334 (579)
                      +...+..+.   .+..  =.+|.+.|.++
T Consensus       438 ~~~~l~~~~~~l~~~~--Cp~C~r~~~~~  464 (880)
T PRK02224        438 ARERVEEAEALLEAGK--CPECGQPVEGS  464 (880)
T ss_pred             HHHHHHHHHHHHhccc--CCCCCCcCCCc
Confidence            555555554   2332  24677766533

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.17  E-value=0.86  Score=53.80  Aligned_cols=81  Identities=32%  Similarity=0.377  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008065          465 ENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAA  544 (579)
Q Consensus       465 EniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeA  544 (579)
                      .+.+..+...+.+++..+...+-+.+.++........++.+...++++|++.-.-+..+.+.+-..+...++++..|...
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  773 (1163)
T COG1196         694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA  773 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555556666666666666666666666677777888888888777777777888888888888888888665


Q ss_pred             H
Q 008065          545 A  545 (579)
Q Consensus       545 c  545 (579)
                      .
T Consensus       774 ~  774 (1163)
T COG1196         774 L  774 (1163)
T ss_pred             H
Confidence            5

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.15  E-value=0.79  Score=52.94  Aligned_cols=225  Identities=16%  Similarity=0.217  Sum_probs=133.2

Q ss_pred             cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 008065           95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLP  174 (579)
Q Consensus        95 ~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP  174 (579)
                      .|+.-+.+..++.-+|..++.++..-+.=+..-.+++-.-..++....+|..-.-||                 -..|+|
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L-----------------~~~g~~  171 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML-----------------QSKGLS  171 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhcCCc
Confidence            444445555555566666665555433322222233333334444555555555554                 123344


Q ss_pred             CCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHH
Q 008065          175 RSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLE  254 (579)
Q Consensus       175 ~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~  254 (579)
                      ..  -.+=..++.|-|-..+-.+-.|-..+....+.++.+|++|.+|+ +.                  ...++.-+.+.
T Consensus       172 ~~--~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~-~~------------------~~~~a~t~alq  230 (775)
T PF10174_consen  172 AE--AEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAREQLHRRL-QM------------------ERDDAETEALQ  230 (775)
T ss_pred             cc--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-hc------------------CCCchhHHHHH
Confidence            31  11223456677777888888898899999999999999887765 32                  23344555788


Q ss_pred             HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCCc
Q 008065          255 KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLPQ  334 (579)
Q Consensus       255 ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~~  334 (579)
                      +-+..||.+|+.+|+-+..|.+-|..|...+......|..+..+|..+..-...+-+=++.+.                 
T Consensus       231 ~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~-----------------  293 (775)
T PF10174_consen  231 TVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLK-----------------  293 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence            889999999999999777777777777665555556677777777766555554433222221                 


Q ss_pred             cchhHHHHHHHHhhhh-hHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHH
Q 008065          335 ETDMEENIRASLAGME-SIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQL  384 (579)
Q Consensus       335 etd~Ee~lrasl~~~k-sI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L  384 (579)
                               --|...+ -|+.+.+...++.+...++ +.++-.|-.++...
T Consensus       294 ---------~eL~rk~~E~~~~qt~l~~~~~~~~d~-r~hi~~lkesl~~k  334 (775)
T PF10174_consen  294 ---------LELSRKKSELEALQTRLETLEEQDSDM-RQHIEVLKESLRAK  334 (775)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHH
Confidence                     1122333 3555666666666666666 55555555444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.74  E-value=1.9  Score=50.97  Aligned_cols=96  Identities=23%  Similarity=0.392  Sum_probs=63.9

Q ss_pred             hhchhHHHHHHHHhhhhhhhhhhHHHHHhhhh-------chheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHH
Q 008065          190 IKRTNEIVEELVGQIDATAKSRNDVREQMEQR-------NFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDE  262 (579)
Q Consensus       190 ~KR~neiveel~~Q~da~~ksrn~aReqmeqr-------ny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~  262 (579)
                      +.|.++|..+|=+|++.-.+.++.|..--++.       .+-+..++.++...+..+++++..-...++++...+.+.+.
T Consensus       188 l~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~  267 (1163)
T COG1196         188 LERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEK  267 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788889999999888888887644433       33445566666666777777777777777777666666666


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHh
Q 008065          263 KVAEIESQGLELRQLVNEYEDKL  285 (579)
Q Consensus       263 ki~ele~E~~~Lk~~v~e~e~kl  285 (579)
                      +|..+..+..+++..+..+...+
T Consensus       268 ~i~~~~~~~~e~~~~~~~~~~~~  290 (1163)
T COG1196         268 EIEELKSELEELREELEELQEEL  290 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665555555555554333

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.56  E-value=1.1  Score=47.51  Aligned_cols=95  Identities=13%  Similarity=0.243  Sum_probs=54.5

Q ss_pred             HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHH
Q 008065          187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAE  266 (579)
Q Consensus       187 ygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~e  266 (579)
                      .+.+...++...++=.|++.......+..+.+++.+        ++...++.++..+..+.+.++.+.+....-+.+|..
T Consensus       298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~--------~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~  369 (562)
T PHA02562        298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN--------EQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE  369 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566667777888888888888888887777776443        345555555555555555555544444444445554


Q ss_pred             HHHhHHHHHHHHHHHHHHhhchh
Q 008065          267 IESQGLELRQLVNEYEDKLKNLE  289 (579)
Q Consensus       267 le~E~~~Lk~~v~e~e~klk~~e  289 (579)
                      ++.....+-..+..++.+|.++.
T Consensus       370 l~~~~~~~~~~l~~l~~~l~~~~  392 (562)
T PHA02562        370 LQAEFVDNAEELAKLQDELDKIV  392 (562)
T ss_pred             HHhhhhchHHHHHHHHHHHHHHH
Confidence            44444434334444444443333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.47  E-value=2.2  Score=48.30  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=24.7

Q ss_pred             cccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhh
Q 008065          178 KYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQME  219 (579)
Q Consensus       178 KYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqme  219 (579)
                      +|.--..-++.-+.|+++++.+|=.|++...+-...|..+.+
T Consensus       167 ~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e  208 (1164)
T TIGR02169       167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE  208 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333445666777777777776666665555555555444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.92  E-value=7.6  Score=49.23  Aligned_cols=232  Identities=24%  Similarity=0.319  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHH
Q 008065           31 RFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKD  110 (579)
Q Consensus        31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~d  110 (579)
                      .+.++--+|+.|-+.+-+..+....++-.++.|+---.+....+.+..++--.+.-+   +....-|+.+.+.+.....+
T Consensus      1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e---~~~~~~k~e~~~~~~~eele 1378 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAE---LAQWKKKFEEEVLQRLEELE 1378 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            345555667888888888888888888888888777777777777555543332221   11222233334444334444


Q ss_pred             HHHHHHHH----HhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccCchhHH
Q 008065          111 EVVKQLDE----VTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVV  186 (579)
Q Consensus       111 e~~kq~d~----~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtGl~ava  186 (579)
                      ++.|.+-.    .-..=+..-...+..-+++..|+.|.+....=+    ++.-..++    |    |-.-||      =-
T Consensus      1379 e~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~----~~~~~~~~----~----le~k~k------~f 1440 (1930)
T KOG0161|consen 1379 ELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL----ERSRAAVA----A----LEKKQK------RF 1440 (1930)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHH----H----HHHHHH------HH
Confidence            44433322    111100000011112223333444443332222    11100000    0    111111      01


Q ss_pred             HHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhh---hchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHH
Q 008065          187 YGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQ---RNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEK  263 (579)
Q Consensus       187 ygv~KR~neiveel~~Q~da~~ksrn~aReqmeq---rny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~k  263 (579)
                      .+.+-.....++++..-+|++.++=... +.+-+   +-|+.+++      .+-.++.+..+-.+.+++|..++.+....
T Consensus      1441 ~k~l~e~k~~~e~l~~Eld~aq~e~r~~-~tel~kl~~~lee~~e------~~e~l~renk~l~~ei~dl~~~~~e~~k~ 1513 (1930)
T KOG0161|consen 1441 EKLLAEWKKKLEKLQAELDAAQRELRQL-STELQKLKNALEELLE------QLEELRRENKNLSQEIEDLEEQKDEGGKR 1513 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566677888888888865432111 11122   23444433      66778889999999999999999999888


Q ss_pred             HHHHHH-------hHHHHHHHHHHHHHHhhchhh
Q 008065          264 VAEIES-------QGLELRQLVNEYEDKLKNLES  290 (579)
Q Consensus       264 i~ele~-------E~~~Lk~~v~e~e~klk~~e~  290 (579)
                      +.++++       +..+|+..+.++++.++..++
T Consensus      1514 v~elek~~r~le~e~~elQ~aLeElE~~le~eE~ 1547 (1930)
T KOG0161|consen 1514 VHELEKEKRRLEQEKEELQAALEELEAALEAEED 1547 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            888877       777888888888888766653

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=95.65  E-value=9.7  Score=48.36  Aligned_cols=56  Identities=14%  Similarity=0.262  Sum_probs=32.9

Q ss_pred             cchhhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhh
Q 008065           95 NDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHM  150 (579)
Q Consensus        95 ~~~~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~m  150 (579)
                      .+..+..+.+..++..+.+.++.++.-.=+-.|.+...+.|++..|..+++.-.+=
T Consensus      1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~ 1140 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEE 1140 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566667777777777776665554444555555666665555555544433

>PRK02224 chromosome segregation protein; Provisional

Probab=95.50  E-value=5.8  Score=44.84  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 008065          469 KASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE  546 (579)
Q Consensus       469 K~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE  546 (579)
                      ..++.++.+....-++++++...+..-...-..+++.....+..|++ -.-+...++++-.++...+.++..|+...+
T Consensus       547 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~  623 (880)
T PRK02224        547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELND  623 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444555555555555555566666666666666663 222333344455555555556666665544

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.28  E-value=5.7  Score=43.45  Aligned_cols=82  Identities=30%  Similarity=0.300  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Q 008065          473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAE-QEAAA  551 (579)
Q Consensus       473 lEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcE-lEveA  551 (579)
                      .|=.+|+..+.+.+.+-..|..+.++|.|-+.++...+...+.+-.-+..|=..|=-.|+-+|.++++=+++++ .++++
T Consensus       182 aeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~~aa~  261 (420)
T COG4942         182 AEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAA  261 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777888999999999999999999999999999999999999999999999999999999998777776 55554


Q ss_pred             hhh
Q 008065          552 GRA  554 (579)
Q Consensus       552 Gka  554 (579)
                      -+.
T Consensus       262 ~~~  264 (420)
T COG4942         262 ARA  264 (420)
T ss_pred             HHH
Confidence            444

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.18  E-value=3.6  Score=40.48  Aligned_cols=234  Identities=18%  Similarity=0.247  Sum_probs=135.7

Q ss_pred             hhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHHhh
Q 008065          236 ISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKI  315 (579)
Q Consensus       236 is~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi~~  315 (579)
                      |..++.++-....-++.++..+...+.+....+.++..|..+|.-+|..|...+..-.-....|.-+.+-.+......+.
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~   82 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV   82 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777778888888899999999999999999999999999988776655555555666666655555444444


Q ss_pred             hcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHHHH
Q 008065          316 VDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVSLL  395 (579)
Q Consensus       316 vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI~sLL  395 (579)
                      +.....               ..++.|..--..++-+-..+..+..|..    .-.+++.-++..+...           
T Consensus        83 lE~r~~---------------~~eeri~~lE~~l~ea~~~~ee~e~k~~----E~~rkl~~~E~~Le~a-----------  132 (237)
T PF00261_consen   83 LENREQ---------------SDEERIEELEQQLKEAKRRAEEAERKYE----EVERKLKVLEQELERA-----------  132 (237)
T ss_dssp             HHHHHH---------------HHHHHHHHCHHHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHHHHH-----------
T ss_pred             HHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-----------
Confidence            432111               1122222111111111111212222221    1111111111111111           


Q ss_pred             HHHhhhhcccCCCCchhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHH
Q 008065          396 RSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEI  475 (579)
Q Consensus       396 RsALsEKea~d~~qk~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~~~eedEv~SLAsalEniMK~sqlEI  475 (579)
                                                                                    -.=+..+++-++.+..++
T Consensus       133 --------------------------------------------------------------EeR~e~~E~ki~eLE~el  150 (237)
T PF00261_consen  133 --------------------------------------------------------------EERAEAAESKIKELEEEL  150 (237)
T ss_dssp             --------------------------------------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------------------HHHHhhhchhHHHHHHHH
Confidence                                                                          111233344444444444


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 008065          476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAV  555 (579)
Q Consensus       476 ~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGkav  555 (579)
                      ..+...|..+-.-.+..-...+.=..+|..++.++++.|.|--++-.+|--|-..|...|.++..||....       .+
T Consensus       151 ~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~-------~~  223 (237)
T PF00261_consen  151 KSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYK-------KV  223 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            44444443333333333333344456688889999999999999999999999999999999999998753       34


Q ss_pred             HHHHHHHHhhhhh
Q 008065          556 EQEFVAQVCFLSC  568 (579)
Q Consensus       556 eqEf~~q~~~l~~  568 (579)
                      -.|.-.-|.-|++
T Consensus       224 ~~eld~~l~el~~  236 (237)
T PF00261_consen  224 QEELDQTLNELNE  236 (237)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhhC
Confidence            4454444444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK11637 AmiB activator; Provisional

Probab=95.14  E-value=1.2  Score=46.89  Aligned_cols=90  Identities=17%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             hHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHH
Q 008065          194 NEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLE  273 (579)
Q Consensus       194 neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~  273 (579)
                      +..--+++.++..+.+.-...+.+++..-=+..-...++++....|....+.+...+..|.+.....+..+.+++++...
T Consensus       165 ~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~  244 (428)
T PRK11637        165 NQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESR  244 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555555555444445555566777777777777777778888888888888888877777777


Q ss_pred             HHHHHHHHHH
Q 008065          274 LRQLVNEYED  283 (579)
Q Consensus       274 Lk~~v~e~e~  283 (579)
                      |...|.++..
T Consensus       245 L~~~I~~l~~  254 (428)
T PRK11637        245 LRDSIARAER  254 (428)
T ss_pred             HHHHHHHHHH
Confidence            7777766543

>PRK04863 mukB cell division protein MukB; Provisional

Probab=95.07  E-value=13  Score=46.24  Aligned_cols=28  Identities=7%  Similarity=0.063  Sum_probs=14.6

Q ss_pred             hhchhHHHHHHHHhhhhhhhhhhHHHHH
Q 008065          190 IKRTNEIVEELVGQIDATAKSRNDVREQ  217 (579)
Q Consensus       190 ~KR~neiveel~~Q~da~~ksrn~aReq  217 (579)
                      +.|.++|+.++-.++..-.+.+..|+..
T Consensus       309 L~rI~diL~ELe~rL~kLEkQaEkA~ky  336 (1486)
T PRK04863        309 LVEMARELAELNEAESDLEQDYQAASDH  336 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.90  E-value=8.6  Score=43.46  Aligned_cols=8  Identities=25%  Similarity=0.588  Sum_probs=3.4

Q ss_pred             HHHHHHHh
Q 008065          307 DQVDDIIK  314 (579)
Q Consensus       307 d~L~~vi~  314 (579)
                      +.+.+++.
T Consensus       506 ~~v~~~i~  513 (1179)
T TIGR02168       506 EGVKALLK  513 (1179)
T ss_pred             hHHHHHHh
Confidence            34444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=94.55  E-value=19  Score=45.73  Aligned_cols=187  Identities=19%  Similarity=0.207  Sum_probs=93.5

Q ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHhHHH-------HHhhHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCc
Q 008065          338 MEENIRASLAGMESIYQLTRIVVEKTRDL-------VQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSK  410 (579)
Q Consensus       338 ~Ee~lrasl~~~ksI~eLa~eV~~K~~~~-------~E~k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~d~~qk  410 (579)
                      +..+...+..+...+.-|...+..-...+       ....++....++..|.+|..+-.|-+..+..++...+..     
T Consensus       296 ~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s-----  370 (1822)
T KOG4674|consen  296 LSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVS-----  370 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhh-----
Confidence            33344444555555555555555544444       233445555777888888888888888888755533221     


Q ss_pred             hhhHHHHhhhhhhhhcccccccccccCCCCCCCccccCCCcchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 008065          411 TNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESS  490 (579)
Q Consensus       411 ~seLLQiAE~GLq~vGfgF~~~~~~geg~~~~S~d~~~~~~~eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~  490 (579)
                        +..-.|.++ .+-|+-|                         -++|+-=.-+.+-|+-..++|-.++..|-.--.++.
T Consensus       371 --~~~a~~s~~-~~~~~sL-------------------------tk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~  422 (1822)
T KOG4674|consen  371 --EKAALASSL-IRPGSSL-------------------------TKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVK  422 (1822)
T ss_pred             --hHHHHHHhh-cccchhH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              111111211 1222222                         235665555666666666666666655555545555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHh
Q 008065          491 LLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR---WKAAAEQEAAAGRAVEQEFVAQVC  564 (579)
Q Consensus       491 ~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~R---WKeAcElEveAGkaveqEf~~q~~  564 (579)
                      ..--.+..|..++++...++-.|...--+.+++       |.-+|.++-+   -...|+.|.-.=..-+.....|++
T Consensus       423 ~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~-------~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~  492 (1822)
T KOG4674|consen  423 QKAPILKEQRSELERMQETKAELSEELDFSNQK-------IQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVN  492 (1822)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555555544444433333333       2222222222   223455555444444455555543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.41  E-value=12  Score=42.78  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 008065          503 LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRW  541 (579)
Q Consensus       503 Ia~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RW  541 (579)
                      +.....+++.++.+-.-+...++.+...+.....++..+
T Consensus       739 ~~~l~~~~~~~~~~~~~~~~el~~l~~~i~~l~~~i~~l  777 (1164)
T TIGR02169       739 LEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL  777 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344343333333333444444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK03918 chromosome segregation protein; Provisional

Probab=92.97  E-value=19  Score=40.59  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHH
Q 008065           34 EVLAELNRERQAREAAENSATELSEKFNRLKALA   67 (579)
Q Consensus        34 ~l~ael~~er~ar~aae~s~~e~~~~f~rlkala   67 (579)
                      ++.+++..=+..-..++.....++..++.|....
T Consensus       204 ~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~  237 (880)
T PRK03918        204 EVLREINEISSELPELREELEKLEKEVKELEELK  237 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444433344444444444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=92.57  E-value=22  Score=40.30  Aligned_cols=37  Identities=43%  Similarity=0.570  Sum_probs=15.2

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065          249 FIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (579)
Q Consensus       249 ~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl  285 (579)
                      .++.+.+.+..-..++.+++.++..++..+..+...+
T Consensus       678 e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~  714 (1179)
T TIGR02168       678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEEL  714 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443334443333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=92.08  E-value=18  Score=38.27  Aligned_cols=185  Identities=21%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             hhHHHHHHhhhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCC---CCCCCCCC--
Q 008065           98 LSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSN---FKNFSAGG--  172 (579)
Q Consensus        98 ~s~~l~~v~~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~---~k~f~~~~--  172 (579)
                      |-.|+.-+...++-+.+.++.+..+       |-.--.|+..|...+..  ++-.-+|+.....+.|   .-+|.|++  
T Consensus       121 L~kE~~li~~~~~lL~~~l~~~~eQ-------l~~lr~ar~~Le~Dl~d--K~~A~~ID~~~~~L~~~S~~i~~~~~~~r  191 (384)
T PF03148_consen  121 LLKEVELIENIKRLLQRTLEQAEEQ-------LRLLRAARYRLEKDLSD--KFEALEIDTQCLSLNNNSTNISYKPGSTR  191 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCccCCCcccCCccc
Confidence            4445555666666666666665554       22222233334333322  2233344444433332   22233322  


Q ss_pred             -CCCCccccCchhHHHHhhhchhHHHHHH---HHhhhhh-hhhhhHHHHH-------hhhhchheeeehhhhHHHhhhch
Q 008065          173 -LPRSQKYTGLPAVVYGVIKRTNEIVEEL---VGQIDAT-AKSRNDVREQ-------MEQRNFEIAIEVSELEATISGLR  240 (579)
Q Consensus       173 -lP~SqKYtGl~avaygv~KR~neiveel---~~Q~da~-~ksrn~aReq-------meqrny~iAIEVSqLEasis~lr  240 (579)
                       -|.+.-|.-....++..|.++..-+..-   -..|+.+ ...+++.+.|       +.+|=++.--=-.+||-......
T Consensus       192 ~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~  271 (384)
T PF03148_consen  192 IPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTL  271 (384)
T ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence             2444455556666677776665433221   1122211 1233333333       34444555555567888888888


Q ss_pred             HHHhhhhhhHHHHHHHHHHhHHHHHHHHH------------------------hHHHHHHHHHHHHHHhhchhhh
Q 008065          241 EEVAKKSSFIENLEKSLIEKDEKVAEIES------------------------QGLELRQLVNEYEDKLKNLESH  291 (579)
Q Consensus       241 ~eva~k~s~~e~l~ks~~eke~ki~ele~------------------------E~~~Lk~~v~e~e~klk~~e~~  291 (579)
                      +|++.-...++.|++++.+|++-+.=.+.                        ||..|++.+..|..+|...+..
T Consensus       272 ~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~  346 (384)
T PF03148_consen  272 QEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEAS  346 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999988888776443332                        7888888888888877776633

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=91.57  E-value=39  Score=41.03  Aligned_cols=77  Identities=23%  Similarity=0.337  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008065          462 GALENIVKASQLEIVELRHSVEELRAES-SLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI  538 (579)
Q Consensus       462 salEniMK~sqlEI~eLrhsLEEsRsEs-~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi  538 (579)
                      .-.+|-|+..+-++-.|+..+.....+. ..+....++-++++..+...|+.||+...=|.+.-++++.+++.-++|.
T Consensus       361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~  438 (1074)
T KOG0250|consen  361 REIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK  438 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4467778888888888888888888888 7888888888888999999999998877777888888888888877775

>PF13514 AAA_27: AAA domain

Probab=91.17  E-value=39  Score=40.21  Aligned_cols=110  Identities=23%  Similarity=0.324  Sum_probs=51.4

Q ss_pred             CCCCCCCccccCchhHHHHhhhchhHHHHH------HHHhhhhhhhhhhHHHHHhhhhchheee--ehhhhHHHhhhchH
Q 008065          170 AGGLPRSQKYTGLPAVVYGVIKRTNEIVEE------LVGQIDATAKSRNDVREQMEQRNFEIAI--EVSELEATISGLRE  241 (579)
Q Consensus       170 ~~~lP~SqKYtGl~avaygv~KR~neivee------l~~Q~da~~ksrn~aReqmeqrny~iAI--EVSqLEasis~lr~  241 (579)
                      +.|+|.+      |+-.-+.+.+-..+.+.      .-..++.....+..++..+...=.....  +++.+=.....+++
T Consensus       593 ~~g~p~~------p~~~~~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~l~~~l~~a~~~~~  666 (1111)
T PF13514_consen  593 AAGLPLS------PAEMRDWLARREAALEAAEELRAARAELEALRARRAAARAALAAALAALGPAEELAALLEEAEALLE  666 (1111)
T ss_pred             hcCCCCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHH
Confidence            5567754      65555666655554432      2233444445555555555544333333  22222222222333


Q ss_pred             HHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHh
Q 008065          242 EVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKL  285 (579)
Q Consensus       242 eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~kl  285 (579)
                      +........+.++..+..-+..+...+.+...+.+.+.......
T Consensus       667 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  710 (1111)
T PF13514_consen  667 EWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEW  710 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444455555555555555555555555555555444443

>TIGR00606 rad50 rad50

Probab=90.92  E-value=45  Score=40.49  Aligned_cols=130  Identities=15%  Similarity=0.223  Sum_probs=57.0

Q ss_pred             HHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc---hhhHHhhhhHHHHHHHHHHHHhhhcCCCccccccccccCCC
Q 008065          257 LIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR---PLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESLFLP  333 (579)
Q Consensus       257 ~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r---~lL~dql~~vs~ihd~L~~vi~~vdd~k~d~s~lsEs~f~~  333 (579)
                      +...+.++.+++.++..++..++.++..+..+....   .-|...+..+.++...+..+=+.|++-...   ++.+.-. 
T Consensus       746 ip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~---l~~~~~~-  821 (1311)
T TIGR00606       746 IPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK---LQGSDLD-  821 (1311)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccccc-
Confidence            333344445555555555555555555554433222   124555555555565555555555532221   1100000 


Q ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhhhhHHH
Q 008065          334 QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS  393 (579)
Q Consensus       334 ~etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEnedI~s  393 (579)
                       .+ + ..|...+.....-++-...-...+..-.+....++..|...+..+..++-.+..
T Consensus       822 -~s-~-~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~  878 (1311)
T TIGR00606       822 -RT-V-QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT  878 (1311)
T ss_pred             -CC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             01 1 113322333333333222223334444455556666666666666666666555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.85  E-value=44  Score=40.31  Aligned_cols=86  Identities=21%  Similarity=0.215  Sum_probs=50.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 008065          484 ELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQV  563 (579)
Q Consensus       484 EsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAGkaveqEf~~q~  563 (579)
                      ..|.+...-+......-.++...+.+...|+.+.+-+.+.+..|--+.+....++.+=+...+.+..+=+..+.++...+
T Consensus       792 ~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l  871 (1201)
T PF12128_consen  792 ERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQL  871 (1201)
T ss_pred             HhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555566555555555556666666666666666666666666666665555555555555555555555555555


Q ss_pred             hhhhhh
Q 008065          564 CFLSCL  569 (579)
Q Consensus       564 ~~l~~~  569 (579)
                      ..|.++
T Consensus       872 ~~l~~~  877 (1201)
T PF12128_consen  872 RRLRDL  877 (1201)
T ss_pred             HHHHHH
Confidence            544443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=90.28  E-value=13  Score=38.41  Aligned_cols=113  Identities=23%  Similarity=0.252  Sum_probs=87.1

Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 008065          455 DEIYNLAGALENIVKASQLEIVELRHSVEEL----RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLD  530 (579)
Q Consensus       455 dEv~SLAsalEniMK~sqlEI~eLrhsLEEs----RsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~d  530 (579)
                      .-+..+.-.+.+.-..+..++..|+....+.    ..+...|+.-+..+..+|......+.+|+.+=.=+...|+.+...
T Consensus       173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~  252 (325)
T PF08317_consen  173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ  252 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466777778888888899999999888865    677888899999999999999999999999988889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh
Q 008065          531 IAAAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLS  567 (579)
Q Consensus       531 IkaAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~  567 (579)
                      +.+...+|..+..-++.=---...-+....+.+..|.
T Consensus       253 k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le  289 (325)
T PF08317_consen  253 KQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALE  289 (325)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999998887766322222333444444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.44  E-value=63  Score=39.91  Aligned_cols=156  Identities=22%  Similarity=0.274  Sum_probs=95.2

Q ss_pred             hhcccCCCCCCCCCC-CCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHh
Q 008065          158 ISGKVSNFKNFSAGG-LPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATI  236 (579)
Q Consensus       158 is~k~s~~k~f~~~~-lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasi  236 (579)
                      .||..|+--+-..+| .-++.--||....+---+-|+-.-+.+..+|+-..--.=++..-+...|--+.-+..+.|.+++
T Consensus       750 ~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~  829 (1293)
T KOG0996|consen  750 KSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASV  829 (1293)
T ss_pred             ccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHH
Confidence            455555443332333 4444446677776766666666666666666655544445555555566666667777777777


Q ss_pred             hhchHHHhhhhhhHHHHHHH----------HHHhHHHHHHHHHhHHHH-----H-HHHHHHHHHhhchhhhchhhHH-hh
Q 008065          237 SGLREEVAKKSSFIENLEKS----------LIEKDEKVAEIESQGLEL-----R-QLVNEYEDKLKNLESHRPLLVD-QL  299 (579)
Q Consensus       237 s~lr~eva~k~s~~e~l~ks----------~~eke~ki~ele~E~~~L-----k-~~v~e~e~klk~~e~~r~lL~d-ql  299 (579)
                      .++-..++--.+-+-.+++.          +.++.+.|+++++|+.++     + +.|.+|-.++   +.-...++. |=
T Consensus       830 k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i---~~i~~e~~q~qk  906 (1293)
T KOG0996|consen  830 KRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKI---DEIGGEKVQAQK  906 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHhhchhhHHhH
Confidence            66666444444444444433          345567789999998888     5 8888888887   433333333 66


Q ss_pred             hhHHHHHHHHHHHHhhh
Q 008065          300 NYVSKIHDQVDDIIKIV  316 (579)
Q Consensus       300 ~~vs~ihd~L~~vi~~v  316 (579)
                      +-|.+++++|..+-.-+
T Consensus       907 ~kv~~~~~~~~~l~~~i  923 (1293)
T KOG0996|consen  907 DKVEKINEQLDKLEADI  923 (1293)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77778888877774433

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=89.01  E-value=54  Score=38.58  Aligned_cols=153  Identities=19%  Similarity=0.243  Sum_probs=83.0

Q ss_pred             hhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHH
Q 008065          230 SELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQV  309 (579)
Q Consensus       230 SqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L  309 (579)
                      +.|-+-+-.||-++..+-+.++...+++..-....+-+.-|+..|++..+..+.++.-|...-.-|-+++.   .=...|
T Consensus       339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~---ekd~ql  415 (775)
T PF10174_consen  339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR---EKDRQL  415 (775)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            34666677777777788887777777777777777777778999999999998888655544333444332   222235


Q ss_pred             HHHHhhhcCCCccccccccccCCCc-cchhHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHhhHHHHhhHHHHHHHHHHhh
Q 008065          310 DDIIKIVDDGNLDQSGLSESLFLPQ-ETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEK  388 (579)
Q Consensus       310 ~~vi~~vdd~k~d~s~lsEs~f~~~-etd~Ee~lrasl~~~ksI~eLa~eV~~K~~~~~E~k~kE~k~Le~sV~~L~kEn  388 (579)
                      ...-.++.. ..|..      ..+. -+.+|+-+...-.-...|-++-.....-...=.+.-+++.+.+..+|.+|-++-
T Consensus       416 ~~~k~Rl~~-~~d~~------~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL  488 (775)
T PF10174_consen  416 DEEKERLSS-QADSS------NEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL  488 (775)
T ss_pred             HHHHHHHhc-ccccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            555555554 33211      1100 012222222221112222221111111222333555666777777777777765


Q ss_pred             hhHH
Q 008065          389 EHIV  392 (579)
Q Consensus       389 edI~  392 (579)
                      .+-.
T Consensus       489 sEk~  492 (775)
T PF10174_consen  489 SEKE  492 (775)
T ss_pred             HHHH
Confidence            5544

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=88.92  E-value=0.12  Score=59.34  Aligned_cols=38  Identities=42%  Similarity=0.539  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHH
Q 008065           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKAL   66 (579)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkal   66 (579)
                      .-++.+|-.+|+.||.+|..||-.++.|..-+.=|+.-
T Consensus        45 q~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~   82 (859)
T PF01576_consen   45 QARIEELEEELESERQARAKAEKQRRDLSEELEELKER   82 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888999999999999999999998887766654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=88.64  E-value=74  Score=39.67  Aligned_cols=219  Identities=18%  Similarity=0.254  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhh
Q 008065           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIA  108 (579)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~  108 (579)
                      ..+|+.-+||.++=.+.-+.|..+.+|.+.+-.|.       +-+=.-..-|-+++                     |+-
T Consensus      1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~-------~~~a~as~~q~~~s---------------------~~e 1472 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRA-------LEQANASRSQMEES---------------------NRE 1472 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHH---------------------HHH
Confidence            45677777777777777666776667666553332       22211111111121                     112


Q ss_pred             HHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCc----cccCchh
Q 008065          109 KDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQ----KYTGLPA  184 (579)
Q Consensus       109 ~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~Sq----KYtGl~a  184 (579)
                      -+.+.+|+-+.+-+-+-+-+++.+++.  .-|..+|-....-+-.=..+|--.|+..+|. -+=|-++-    .-.-|++
T Consensus      1473 l~~Li~~v~~Flt~~~adp~si~~vA~--~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nV-d~IL~~T~~di~ra~~L~s 1549 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAE--EVLALELPLTPEQIQQLTGEIQERVASLPNV-DAILSRTKGDIARAENLQS 1549 (1758)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhccCCCCHHHHHHHHHHHHHHHHhcccH-HHHHHhhhhhHHHHHHHHH
Confidence            223445555666665556666666655  3466677666666655566666666665553 11132220    1123455


Q ss_pred             HHHHhhhchhHH---HHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhH
Q 008065          185 VVYGVIKRTNEI---VEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKD  261 (579)
Q Consensus       185 vaygv~KR~nei---veel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke  261 (579)
                      .|---=|++.++   +|+++.-+..+.++-+.|..-|.|-+           +.|..-++.+++--.+....|+-+.---
T Consensus      1550 ~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-----------~~~~~a~~~l~kv~~~t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1550 EAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-----------RDIRLAQQLLAKVQEETAAAEKLATSAT 1618 (1758)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544444444433   44555555666666666666665543           2333444444544444445555566666


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065          262 EKVAEIESQGLELRQLVNEYEDKLKNLE  289 (579)
Q Consensus       262 ~ki~ele~E~~~Lk~~v~e~e~klk~~e  289 (579)
                      ..+.+|++-|++||-+...-....++++
T Consensus      1619 q~~~eL~~~~e~lk~~~~qns~~A~~a~ 1646 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHKAAQNSAEAKQAE 1646 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            7778888877777777665555554444

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=88.36  E-value=5.1  Score=36.32  Aligned_cols=72  Identities=25%  Similarity=0.382  Sum_probs=40.1

Q ss_pred             hhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHH
Q 008065          229 VSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVS  303 (579)
Q Consensus       229 VSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs  303 (579)
                      ++.|.+..+.++.++..-.+..+.....+...+....+   +=..|.+-+.+++.++..|..|+.+|.+||..++
T Consensus        61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~---qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ls  132 (132)
T PF07926_consen   61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEE---QKEQLEKELSELEQRIEDLNEQNKLLHDQLESLS  132 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            34444444444444444444444444444444333222   2235555555666666666899999999997653

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=88.06  E-value=92  Score=40.06  Aligned_cols=307  Identities=21%  Similarity=0.244  Sum_probs=161.8

Q ss_pred             HHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhc
Q 008065          213 DVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHR  292 (579)
Q Consensus       213 ~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r  292 (579)
                      ..-.||++.+.    |+-++.-.++...++|-.++.++..=-..+.---..++++.++..++.+.|..++.-+..+..++
T Consensus       395 ~~qqqle~~~l----ele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~  470 (1822)
T KOG4674|consen  395 KLQQQLESLKL----ELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQL  470 (1822)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666654    34566666666666666666666654444444455566666666666666666666665555333


Q ss_pred             hhhHHhhhhHHHHHHHH-------HHHHhhhcCCCccccccccccCCCccchhHHHHHHHHhhhhhHHHHHH---HHHHH
Q 008065          293 PLLVDQLNYVSKIHDQV-------DDIIKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGMESIYQLTR---IVVEK  362 (579)
Q Consensus       293 ~lL~dql~~vs~ihd~L-------~~vi~~vdd~k~d~s~lsEs~f~~~etd~Ee~lrasl~~~ksI~eLa~---eV~~K  362 (579)
                      .-+.-++......+.-|       ..=++++..+...  . -++.-.-++++.+.-|-.-|..+++|-+|.-   +....
T Consensus       471 ~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~--~-~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~  547 (1822)
T KOG4674|consen  471 NDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKI--T-VSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNA  547 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--c-cCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            33333333332222211       1112223322221  1 1111144677777888888888888887642   22222


Q ss_pred             hHHHH---Hh------------hHHHHhhHHHHHHHHHHhhhhHHHHHHHHhhhhcccCCCCchhhHHHHhhhhhhhhcc
Q 008065          363 TRDLV---QK------------KSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGI  427 (579)
Q Consensus       363 ~~~~~---E~------------k~kE~k~Le~sV~~L~kEnedI~sLLRsALsEKea~d~~qk~seLLQiAE~GLq~vGf  427 (579)
                      |+.+-   |.            -+-.+..+...|..|.++..+.+..+.+-+++|.-.-                     
T Consensus       548 vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~---------------------  606 (1822)
T KOG4674|consen  548 VRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYK---------------------  606 (1822)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence            22222   22            2223446778999999999999999999999876510                     


Q ss_pred             cccccccccCC---CCCCCc-cccC-CCc------chhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 008065          428 DFKFSKLLSDG---KVPVSD-DKAN-AME------TEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHL  496 (579)
Q Consensus       428 gF~~~~~~geg---~~~~S~-d~~~-~~~------~eedEv~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~  496 (579)
                        .+-.-+.+.   ++.+|. +.+. |..      ..+.+.-+.-.-.-.+++.++-.+..|+-.+...|++...+....
T Consensus       607 --e~l~~~e~~~~~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~  684 (1822)
T KOG4674|consen  607 --ELLAELEDSHQLKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL  684 (1822)
T ss_pred             --HhhhcccccccCCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence              111111111   000011 1111 110      122333344455556677777777777777777777766665443


Q ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008065          497 EAQ-------AKELSHRMKRIEELEEKERIANES-------VEGLMLDIAAAEEEISRWKAAAEQEAAAGR  553 (579)
Q Consensus       497 E~Q-------aKeIa~~~~~IkELEErErvl~en-------VEeLm~dIkaAEEEi~RWKeAcElEveAGk  553 (579)
                      .-+       -+.|..+...+..|++|..-+-..       |..+.-++-++.    +|-..++-||..=|
T Consensus       685 ~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~----~k~~~le~ev~~LK  751 (1822)
T KOG4674|consen  685 NLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSAN----EKLEKLEAELSNLK  751 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHH
Confidence            333       234556666677777665433221       334444444443    45556666665543

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=87.89  E-value=8.5  Score=40.60  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHH----H
Q 008065           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIA----E  104 (579)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~----~  104 (579)
                      .+++.+|..-||+=.+-|.--.+-+..+++.+..=|.=.-+.-..=--++|+..--+-.-+..-+.++||+.+|.    +
T Consensus        17 LqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~q   96 (307)
T PF10481_consen   17 LQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQ   96 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHH
Confidence            567788888888766666666677777777776666544444333333444444434444555577777887776    2


Q ss_pred             Hh---hhHHHHHHHHHHHhhhhcCCccchhhhhhhhhhhhHHhhhhhhhhhhhhhhhhcccCCCCCCCCCCCCCCccccC
Q 008065          105 VN---IAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTG  181 (579)
Q Consensus       105 v~---~~~de~~kq~d~~~~~r~~~~~~~~~~~~~~~~l~~ei~~s~~mL~sg~ekis~k~s~~k~f~~~~lP~SqKYtG  181 (579)
                      |+   +|-.-..+|++...-          +..    -+++|++.|-.-..+|--.++---.|-|+| +.|++.+|.|+|
T Consensus        97 v~~lEgQl~s~Kkqie~Leq----------elk----r~KsELErsQ~~~~~~~~sl~~~stpqk~f-~~p~tp~q~~~~  161 (307)
T PF10481_consen   97 VNFLEGQLNSCKKQIEKLEQ----------ELK----RCKSELERSQQAASSGDVSLNPCSTPQKSF-ATPLTPSQYYSD  161 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------HHH----HHHHHHHHHHHhhccCCccccccCCchhhc-cCCCChhhhhhh
Confidence            21   111222223322111          123    388899988877777776677677788899 778888877765

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=86.80  E-value=15  Score=33.89  Aligned_cols=71  Identities=31%  Similarity=0.333  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHH
Q 008065          464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL---EAQAKELSHRMKRIEELEEKERIAN-------ESVEGLMLDIAA  533 (579)
Q Consensus       464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~---E~QaKeIa~~~~~IkELEErErvl~-------enVEeLm~dIka  533 (579)
                      +|.-+-.++.++..|...=+.++.|+-.|-...   ....+++......+++|+.|+..+-       +-||+|=+||..
T Consensus        28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D  107 (120)
T PF12325_consen   28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD  107 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            455566667777777777777888888877766   4556889999999999999998874       568888888865


Q ss_pred             H
Q 008065          534 A  534 (579)
Q Consensus       534 A  534 (579)
                      .
T Consensus       108 l  108 (120)
T PF12325_consen  108 L  108 (120)
T ss_pred             H
Confidence            4

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.67  E-value=55  Score=35.04  Aligned_cols=38  Identities=5%  Similarity=0.018  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 008065          510 IEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQ  547 (579)
Q Consensus       510 IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcEl  547 (579)
                      ..+++++=.-+.+....+-.++...+.|..+|...-++
T Consensus       374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~  411 (562)
T PHA02562        374 FVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDL  411 (562)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455556677777777777777777664443

>PRK11637 AmiB activator; Provisional

Probab=85.38  E-value=54  Score=34.77  Aligned_cols=57  Identities=12%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             hhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065          231 ELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKN  287 (579)
Q Consensus       231 qLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~  287 (579)
                      +++..|..++.+...-...+..+.+++.....+|..++.++..+...+..++..|..
T Consensus        58 ~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~  114 (428)
T PRK11637         58 AKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK  114 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444455555555555555555555444444444444444433

>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking

Probab=85.23  E-value=35  Score=32.36  Aligned_cols=82  Identities=17%  Similarity=0.275  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008065          473 LEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAG  552 (579)
Q Consensus       473 lEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWKeAcElEveAG  552 (579)
                      .+...+...|...|+...+|+.--..+..++......|++++.+..-+....+.+...++   .|+.||..-=-   .--
T Consensus       135 ~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k---~E~~rf~~~k~---~d~  208 (236)
T PF09325_consen  135 IEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIK---KELERFEKEKV---KDF  208 (236)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHH
Confidence            444455556666666666666555566788999999999999999999999999987655   79999986433   333


Q ss_pred             hhHHHHHH
Q 008065          553 RAVEQEFV  560 (579)
Q Consensus       553 kaveqEf~  560 (579)
                      +.++..|.
T Consensus       209 k~~l~~~~  216 (236)
T PF09325_consen  209 KSMLEEYA  216 (236)
T ss_pred             HHHHHHHH
Confidence            45555553

This is the C-terminal dimerisation domain [].

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=84.76  E-value=16  Score=33.42  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=32.1

Q ss_pred             HhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhh
Q 008065          188 GVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAK  245 (579)
Q Consensus       188 gv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~  245 (579)
                      .-..++=.+|-+||.++|-....|...-.++-.-.|+    ...|...+.+|++.++.
T Consensus        31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d----~~~l~~~~~rL~~~~~~   84 (151)
T PF11559_consen   31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSD----IERLQNDVERLKEQLEE   84 (151)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHH
Confidence            3345566788999999988777766655555444443    23455555444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=84.71  E-value=74  Score=35.73  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=10.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhc
Q 008065          263 KVAEIESQGLELRQLVNEYEDKLKN  287 (579)
Q Consensus       263 ki~ele~E~~~Lk~~v~e~e~klk~  287 (579)
                      .+..+..+...+...+.++...+..
T Consensus       422 ~i~~l~e~l~~l~~~l~~~~~~~~~  446 (650)
T TIGR03185       422 QIAQLLEELGEAQNELFRSEAEIEE  446 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=83.32  E-value=97  Score=36.02  Aligned_cols=39  Identities=15%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065          476 VELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE  514 (579)
Q Consensus       476 ~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE  514 (579)
                      .||=.+|.++|-+.+.++..+-.|.+||.++...|.+|-
T Consensus       618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478889999999999999999999999999999988764

; GO: 0016021 integral to membrane

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=81.59  E-value=58  Score=32.21  Aligned_cols=99  Identities=18%  Similarity=0.220  Sum_probs=65.6

Q ss_pred             HhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 008065          202 GQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEY  281 (579)
Q Consensus       202 ~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~  281 (579)
                      ..+...+..-.+++..|++|++...==+.+||..+..       -....+....-+.+-..++.-++.+.....++++.+
T Consensus        67 ~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~e-------a~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~  139 (237)
T PF00261_consen   67 EEAEKRADESERARKVLENREQSDEERIEELEQQLKE-------AKRRAEEAERKYEEVERKLKVLEQELERAEERAEAA  139 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3444555555678899999999988888888888743       334445555555566666666666666777777777


Q ss_pred             HHHhhchhhhchhhHHhhhhHHHHHH
Q 008065          282 EDKLKNLESHRPLLVDQLNYVSKIHD  307 (579)
Q Consensus       282 e~klk~~e~~r~lL~dql~~vs~ihd  307 (579)
                      +.+++.|+..=..+..+|+++..-.+
T Consensus       140 E~ki~eLE~el~~~~~~lk~lE~~~~  165 (237)
T PF00261_consen  140 ESKIKELEEELKSVGNNLKSLEASEE  165 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhh
Confidence            77777777555555666665544433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []

Probab=81.38  E-value=14  Score=37.61  Aligned_cols=130  Identities=25%  Similarity=0.279  Sum_probs=85.7

Q ss_pred             cccCCCCCCCCCCCCCCccccCchhHHHHhhhchhHHHHHHHHhhhhhhhhhhHHHHHhhhhchheeeehhhhHHHhhhc
Q 008065          160 GKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGL  239 (579)
Q Consensus       160 ~k~s~~k~f~~~~lP~SqKYtGl~avaygv~KR~neiveel~~Q~da~~ksrn~aReqmeqrny~iAIEVSqLEasis~l  239 (579)
                      =|-+-.|+||..||...+|+...+.-.--++.-.+..|++|=+|||..                         |+-+   
T Consensus        94 EkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~-------------------------E~E~---  145 (233)
T PF04065_consen   94 EKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQL-------------------------EAEI---  145 (233)
T ss_pred             HHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHH---
Confidence            345677999999999998887777766667777777777777776643                         2222   


Q ss_pred             hHHHhhhhhhHHHHH------HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchhhhchhhHHhhhhHHHHHHHHHHHH
Q 008065          240 REEVAKKSSFIENLE------KSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDII  313 (579)
Q Consensus       240 r~eva~k~s~~e~l~------ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e~~r~lL~dql~~vs~ihd~L~~vi  313 (579)
                                 |+|.      +..+.+..++.+++.-+...+--|..||.-|+.|+.-. +   .-.-|..|.+.|.-.|
T Consensus       146 -----------E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~-l---~~e~V~~ikedieyYv  210 (233)
T PF04065_consen  146 -----------ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDE-L---DPEQVEDIKEDIEYYV  210 (233)
T ss_pred             -----------HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C---CHHHHHHHHHHHHHHH
Confidence                       2222      23446788888888888888888888888888877332 1   1145567888888888


Q ss_pred             hhhcCCC-ccccccccccCC
Q 008065          314 KIVDDGN-LDQSGLSESLFL  332 (579)
Q Consensus       314 ~~vdd~k-~d~s~lsEs~f~  332 (579)
                      +.=.+.- .+--.||+.+++
T Consensus       211 e~n~d~Df~ede~iYddl~L  230 (233)
T PF04065_consen  211 ESNQDPDFEEDEDIYDDLNL  230 (233)
T ss_pred             HcCCCCcccchHhHhhccCC
Confidence            7633321 222345555554

This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=80.31  E-value=0.54  Score=54.29  Aligned_cols=104  Identities=27%  Similarity=0.429  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcchhhHHHHHHhhhHHH
Q 008065           32 FREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSNDKLSTEIAEVNIAKDE  111 (579)
Q Consensus        32 ~~~l~ael~~er~ar~aae~s~~e~~~~f~rlkala~ea~kkrde~~r~rd~a~r~ke~~~~~~~~~s~~l~~v~~~~de  111 (579)
                      +.+|.++|+..-+++-.+|...-.++..++-|++-+.+.=+.+.++              -..+.+|..++.++..+-++
T Consensus       161 ~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el--------------~~~k~kL~~E~~eL~~qLee  226 (859)
T PF01576_consen  161 LDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL--------------TEQKAKLQSENSELTRQLEE  226 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444444444444444444443333333333              33445677777777777666


Q ss_pred             HHHHHHHHhhhhcC-------CccchhhhhhhhhhhhHHhhhhhh
Q 008065          112 VVKQLDEVTKARDG-------SRSQLDEVTKAKDGLRSEIENSAH  149 (579)
Q Consensus       112 ~~kq~d~~~~~r~~-------~~~~~~~~~~~~~~l~~ei~~s~~  149 (579)
                      ...++..+.+.+..       .+.+|++-++++..|.+.+.+.-+
T Consensus       227 ~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~  271 (859)
T PF01576_consen  227 AESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEH  271 (859)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHH
Confidence            66666666554433       444555666666666555544433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=80.11  E-value=67  Score=32.00  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=37.2

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008065          456 EIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELE  514 (579)
Q Consensus       456 Ev~SLAsalEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELE  514 (579)
                      +-.+|+..|.+.+.....++.+||-.|.++..-+..=-.+...-.+-+.+...++.+|.
T Consensus       175 ~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~  233 (264)
T PF06008_consen  175 ENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELS  233 (264)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45578888999999999999999999999865443333333333333333333333333

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length

Probab=80.02  E-value=16  Score=33.98  Aligned_cols=70  Identities=26%  Similarity=0.475  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHHHHHHHH
Q 008065          462 GALENIVKASQLEIVELRHSVEEL--RAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGL---MLDIAAAEE  536 (579)
Q Consensus       462 salEniMK~sqlEI~eLrhsLEEs--RsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeL---m~dIkaAEE  536 (579)
                      ++|-..|++++.+|.+||.-+-.|  ||+.++=.-|     ..+.+...++-.||       .+|..|   +.++|.+=.
T Consensus         4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mh-----rRlDElV~Rv~~lE-------s~~~~lk~dVsemKpVT~   71 (112)
T PF07439_consen    4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMH-----RRLDELVERVTTLE-------SSVSTLKADVSEMKPVTD   71 (112)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HhHHHHHHHHHHHH-------HHHHHHHhhHHhccchHH
Confidence            345567788888888888777655  5555543221     23334444444444       444444   445677789


Q ss_pred             HHHHHHH
Q 008065          537 EISRWKA  543 (579)
Q Consensus       537 Ei~RWKe  543 (579)
                      +|.|||-
T Consensus        72 dV~rwkl   78 (112)
T PF07439_consen   72 DVKRWKL   78 (112)
T ss_pred             HHHHHHH
Confidence            9999984

Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	579
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 79.1 bits (194), Expect = 2e-15
 Identities = 85/546 (15%), Positives = 176/546 (32%), Gaps = 154/546 (28%)

Query: 81  RDEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKAR---DGSRSQLDEVTKA- 136
            +   ++ +++ +S   LS E  E+    D ++   D V+          S+ +E+ +  
Sbjct: 31  DNFDCKDVQDMPKS--ILSKE--EI----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 137 ------------KDGLRSEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPA 184
                          +++E    + M    IE+     ++ + F+   + R Q Y  L  
Sbjct: 83  VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 185 VVYGVIKRTNEIVEELVGQIDATAKS-------RNDVREQMEQRNFEIA-IEVSELEATI 236
            +  +    N +++ ++G    + K+        +   +   + +F+I  + +       
Sbjct: 143 ALLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCN--- 193

Query: 237 SGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRP--- 293
                      + +E L+K L + D            ++  ++  + +L+ L   +P   
Sbjct: 194 --------SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 294 -LLVDQLNYVSKIHDQVDDI--IKIVDDGNLDQSGLSESLFLPQETDMEENIRASLAGME 350
            LLV            + ++   K  +             F         N+        
Sbjct: 246 CLLV------------LLNVQNAKAWNA------------F---------NLSC------ 266

Query: 351 SIYQLTRIVVEKTR-----DLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSV 405
                 +I++  TR     D +   +    SL+     L  ++  + SLL   L  R   
Sbjct: 267 ------KILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCRPQD 317

Query: 406 DPSS--KTNELF--KVAENGLREAGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLA 461
            P     TN      +AE+ +R+    +   K        V+ DK               
Sbjct: 318 LPREVLTTNPRRLSIIAES-IRDGLATWDNWKH-------VNCDK--------------- 354

Query: 462 GALENIVKAS--QLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERI 519
             L  I+++S   LE  E R   + L    S+           LS     + +  +   +
Sbjct: 355 --LTTIIESSLNVLEPAEYRKMFDRL----SVFPPSAHIPTILLSLIWFDVIK-SDVMVV 407

Query: 520 ANESVEGLMLDIAAAEEEIS------RWKAAAEQEAAAGRAVEQEFVAQVCF----LSCL 569
            N+  +  +++    E  IS        K   E E A  R++   +     F    L   
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 570 RREQYF 575
             +QYF
Sbjct: 468 YLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.6 bits (190), Expect = 6e-15
 Identities = 94/604 (15%), Positives = 199/604 (32%), Gaps = 151/604 (25%)

Query: 7   DAVLSDVEGEIDVQTSSDEDFSVERFREVLAELNRERQAREAAENSATELSEKFNRLKAL 66
           DA + + + + DVQ       S E    ++   +                     RL   
Sbjct: 27  DAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL---------------RL--- 67

Query: 67  AHESIKRRDESTRQR--DEALREKEEILRSNDKLSTEIAEVNIAKDEVVKQLD----EVT 120
              ++  + E   Q+  +E LR   + L S   + TE  + ++     ++Q D    +  
Sbjct: 68  -FWTLLSKQEEMVQKFVEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 121 KARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIEKISGKVSNFKNFS--AGGLPRSQK 178
                + S+L    K +  L  E+  + ++L+ G+   SGK       +  A  +  S K
Sbjct: 125 VFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGV-LGSGK-------TWVALDVCLSYK 175

Query: 179 Y-TGLPAVVY----GVIKRTNEIVE---ELVGQIDATAKSRND---------------VR 215
               +   ++            ++E   +L+ QID    SR+D               +R
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 216 EQMEQRNFEIAI----EVSE---LEA------TISGLRE-EVAKKSSFIENLEKSLIEKD 261
             ++ + +E  +     V       A       +   R  +V    S       SL    
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 262 EKVAEIESQGLELRQLVNEYEDKLKN-LESHRPLLV-----------DQLNYVSKI-HDQ 308
             +   E + L L + ++     L   + +  P  +              +    +  D+
Sbjct: 296 MTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 309 VDDIIKI-VDDGNLDQSGLSE-----SLFLPQETDMEENIRASLAGMESIYQLTRIVVEK 362
           +  II+  ++   L+ +   +     S+F P    +   + + +   + I     +VV K
Sbjct: 355 LTTIIESSLN--VLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWF-DVIKSDVMVVVNK 410

Query: 363 --TRDLVQKKSREVK-SLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAE 419
                LV+K+ +E   S+     +L  + E+  +L RS +    ++  +  +++L     
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYL 469

Query: 420 NG---------LREAG------------IDFKF--SKLLSDG-----KVPVSD------- 444
           +          L+               +DF+F   K+  D         + +       
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 445 ------DKANAMETEEDEIYN-LAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLE 497
                 D     E   + I + L    EN++ +   +++ +      L AE   + E   
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-----ALMAEDEAIFEEAH 584

Query: 498 AQAK 501
            Q +
Sbjct: 585 KQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 43/339 (12%), Positives = 86/339 (25%), Gaps = 102/339 (30%)

Query: 298 QLNYVSKIHDQVDDIIKIVDDGNLDQSGLSESL---FLPQETDMEENIRASLAGMESIYQ 354
           Q  Y   +    D  +      N D   + +        +E D   +I  S   +    +
Sbjct: 15  QYQYKDILSVFEDAFVD-----NFDCKDVQDMPKSILSKEEID---HIIMSKDAVSGTLR 66

Query: 355 LTRIVVEKTRDLVQKKSREVKSLN-----EAVGQLVKEKEHIVSLLRSALSKRM-SVDPS 408
           L   ++ K  ++VQK   EV  +N       +    ++   +  +      +        
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 409 SKTN----ELFKVAENGLRE------------AGI-----------DFKFSKLLSDG--- 438
           +K N    + +      L E             G             +K    +      
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 439 -KVPVSDDKANAMETEEDEIYNLAGALENIVKASQ---LEIVELRHSVEEL----RAESS 490
             +   +     +E  +  +Y +     +    S    L I  ++  +  L      E+ 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 491 LL-------KEHLEA---QAKEL-------------SHRMKRI------EELEEKE---- 517
           LL        +   A     K L             +     I        L   E    
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 518 --RIANESVEGL----------MLDIAAAE--EEISRWK 542
             +  +   + L           L I A    + ++ W 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 39/275 (14%), Positives = 97/275 (35%), Gaps = 13/275 (4%)

Query: 29   VERFREVLAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREK 88
             E    +  +L  E +    AE     L+ K   L+ + HE   R +E   +  +   EK
Sbjct: 891  CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950

Query: 89   -------EEILRSNDKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLR 141
                    ++    ++      ++ + K     ++ ++         Q +++TK +  L 
Sbjct: 951  KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 142  SEIENSAHMLVTGIEKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEE-- 199
              + +    L    EK            +       +          + K   ++  E  
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 200  -LVGQIDATAKSRNDVREQMEQRNFEIAIEVSELE---ATISGLREEVAKKSSFIENLEK 255
             L  QI        +++ Q+ ++  E+   ++ LE   +  +   +++ +  S I +L++
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE 1130

Query: 256  SLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLES 290
             L  +     + E Q  +L + +   + +L++   
Sbjct: 1131 DLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 58/350 (16%), Positives = 133/350 (38%), Gaps = 57/350 (16%)

Query: 209  KSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIE 268
            +++++  ++ ++R  +   E+ ELE   + L EE       ++   +   E +E    + 
Sbjct: 860  QAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA 919

Query: 269  SQGLELRQLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDDGNLDQSGLSE 328
            ++  EL ++++E E +++  E     L  +     K+  Q+ D                 
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEK---KKMQQQMLD----------------- 959

Query: 329  SLFLPQETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEK 388
               L ++ + EE  R  L   +                ++K   ++  + +   +L KE+
Sbjct: 960  ---LEEQLEEEEAARQKLQLEK----------VTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 389  EHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLREAGIDFKFSKLLSDGKVPVSDDKAN 448
            + +   +    +     +   K   L K+            K   ++S+           
Sbjct: 1007 KLLEERVSDLTTNLAEEE--EKAKNLTKLKN----------KHESMISE----------- 1043

Query: 449  AMETEEDEIYNLAGALENIVKASQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMK 508
             +E    +       LE I +  + E  +L   + EL+A+ + LK  L  + +EL   + 
Sbjct: 1044 -LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 509  RIEELEEKERIANESVEGLMLDIAAAEEEISRWKAAAEQEAAAGRAVEQE 558
            R+E+   ++  A + +  L   I+  +E++   KAA  +     R + +E
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 45/339 (13%), Positives = 126/339 (37%), Gaps = 49/339 (14%)

Query: 190  IKRTNEIVEELVGQIDATAKSRNDVREQMEQRNFEIAIEVSELEATISGLREEVAKKSSF 249
            +++ +  + E    +    ++  ++  + E+    +A +  ELE  +  +          
Sbjct: 883  LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR------- 935

Query: 250  IENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLESHRPLLVDQL-NYVSKIHDQ 308
            IE  E+   +   +  +++ Q L+L + + E E   + L+  +     ++      I   
Sbjct: 936  IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995

Query: 309  VDDIIKIVDDGNLDQSGLSESL-FLPQETDMEENIRASLAGMESIYQLTRIVVE---KTR 364
             D   K+  +  L +  +S+    L +E +  +N+       ES+     + ++   K+R
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055

Query: 365  DLVQKKSREVKSLNEAVGQLVKEKEHIVSLLRSALSKRMSVDPSSKTNELFKVAENGLRE 424
              ++K  R+++  +  + + + E +  ++ L++ L+K+                      
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK---------------------- 1093

Query: 425  AGIDFKFSKLLSDGKVPVSDDKANAMETEEDEIYNLAGALENI---VKASQLEIVELRHS 481
               + +    L+       +D+ +       +I  L   + ++   +++ +    +    
Sbjct: 1094 ---EEELQAALAR-----LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145

Query: 482  VEELRAESSLLKEHLEAQAKELSH----RMKRIEELEEK 516
              +L  E   LK  LE      +     R    ++ ++K
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 42/364 (11%), Positives = 117/364 (32%), Gaps = 38/364 (10%)

Query: 36   LAELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSN 95
            L ++ R+ +  +A +       E+  + +A   E  ++  +   +++    + +      
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908

Query: 96   DKLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGI 155
             +       +   K E+ + L E+    +    +  ++   K  ++ ++ +    L    
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE-- 966

Query: 156  EKISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVR 215
                                               +   + ++      D   K   D  
Sbjct: 967  ----------------------------------EEAARQKLQLEKVTADGKIKKMEDDI 992

Query: 216  EQMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELR 275
              ME +N ++  E   LE  +S L   +A++    +NL K   + +  ++E+E +  +  
Sbjct: 993  LIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052

Query: 276  QLVNEYEDKLKNLESHRPLLVDQLNYVSKIHDQVDDIIKIVDD--GNLDQSGLSESLFLP 333
            +   E E   + LE     L +Q+  +     ++   +   ++           E+    
Sbjct: 1053 KSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN 1112

Query: 334  QETDMEENIRASLAGMESIYQLTRIVVEKTRDLVQKKSREVKSLNEAVGQLVKEKEHIVS 393
                    + + ++ ++   +  +    K     +  S E+++L   +   +        
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172

Query: 394  LLRS 397
            L  S
Sbjct: 1173 LRGS 1176

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 17/86 (19%)

Query: 481 SVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISR 540
             + L  E     E +    +E   + KR++EL+   ++  +           A++++  
Sbjct: 76  QADRLTQEP----ESIRKWREE---QRKRLQELDAASKVMEQEW------REKAKKDLEE 122

Query: 541 W----KAAAEQEAAAGRAVEQEFVAQ 562
           W        E+     R  ++ F  Q
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQ 148

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 32/255 (12%), Positives = 81/255 (31%), Gaps = 27/255 (10%)

Query: 37   AELNRERQAREAAENSATELSEKFNRLKALAHESIKRRDESTRQRDEALREKEEILRSND 96
              L R +      E+ +  + +      A  H     +     Q        +  L+   
Sbjct: 851  GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910

Query: 97   KLSTEIAEVNIAKDEVVKQLDEVTKARDGSRSQLDEVTKAKDGLRSEIENSAHMLVTGIE 156
              +  +         +  ++ ++ +  D    +   + +  + L          L + +E
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 157  KISGKVSNFKNFSAGGLPRSQKYTGLPAVVYGVIKRTNEIVEELVGQIDATAKSRNDVRE 216
            ++       KN +                    +    E + +L  ++  T   +  + E
Sbjct: 971  RLRMSEEEAKNATN------------------RVLSLQEEIAKLRKELHQTQTEKKTIEE 1012

Query: 217  QMEQRNFEIAIEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGL--EL 274
              ++   E    VSEL+   + L+ E        E L + + ++ +++ E   + L  E 
Sbjct: 1013 WADKYKHETEQLVSELKEQNTLLKTE-------KEELNRRIHDQAKEITETMEKKLVEET 1065

Query: 275  RQLVNEYEDKLKNLE 289
            +QL  +  D+    +
Sbjct: 1066 KQLELDLNDERLRYQ 1080

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	579
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.75
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.57
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	91.37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	89.74
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	88.84
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	86.51
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	82.42

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.75  E-value=0.078  Score=60.41  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhh
Q 008065           31 RFREVLAELNRERQAREAAENSATELSEKFNRL   63 (579)
Q Consensus        31 ~~~~l~ael~~er~ar~aae~s~~e~~~~f~rl   63 (579)
                      .+.++-.+|..-+..-...+....+++.....|
T Consensus       858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~L  890 (1184)
T 1i84_S          858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL  890 (1184)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444433333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.57  E-value=0.035  Score=63.19  Aligned_cols=36  Identities=19%  Similarity=0.220  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHhhH
Q 008065           29 VERFREVLAELNRERQAREAAENSATELSEKFNRLK   64 (579)
Q Consensus        29 ~~~~~~l~ael~~er~ar~aae~s~~e~~~~f~rlk   64 (579)
                      .+++.++-+.|.+....+..++.....++...+.++
T Consensus       863 ~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~  898 (1184)
T 1i84_S          863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ  898 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555444444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=91.37  E-value=6.8  Score=34.10  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 008065          503 LSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEI  538 (579)
Q Consensus       503 Ia~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi  538 (579)
                      +......+..++..-.-+...+..+-..+..+..++
T Consensus       225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (284)
T 1c1g_A          225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDEL  260 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444443333334444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.74  E-value=8.6  Score=39.33  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 008065          464 LENIVKASQLEIVELRHSVEELRAESSLLKEHL-----------EAQAKELSHRMKRIEELEEKERIANESVEGLMLDIA  532 (579)
Q Consensus       464 lEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~-----------E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIk  532 (579)
                      ++..|..+..++.+.+..+...+.+.+..+...           +...+++.+...+++.++..-..+-+.++..+....
T Consensus       461 ~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  540 (597)
T 3oja_B          461 LRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETE  540 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence            456777777777777778877777776655443           455666677777888888888888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhh
Q 008065          533 AAEEEISRWKAAAEQEAAAGRAVEQEFVAQVCFLSCL  569 (579)
Q Consensus       533 aAEEEi~RWKeAcElEveAGkaveqEf~~q~~~l~~~  569 (579)
                      ..+.|+.+|+..++..-+.-....+|....-..++.|
T Consensus       541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          541 DLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888877665555544

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=88.84  E-value=5.2  Score=38.19  Aligned_cols=56  Identities=4%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             eehhhhHHHhhhchHHHhhhhhhHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHhhchh
Q 008065          227 IEVSELEATISGLREEVAKKSSFIENLEKSLIEKDEKVAEIESQGLELRQLVNEYEDKLKNLE  289 (579)
Q Consensus       227 IEVSqLEasis~lr~eva~k~s~~e~l~ks~~eke~ki~ele~E~~~Lk~~v~e~e~klk~~e  289 (579)
                      -||..|++.+.+++..+......++++.+.....+..|.       .++.++..+..++.+..
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~-------~~~~ri~~~~~~l~~v~   87 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ-------DTNAKIASIQKKMSEIK   87 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHccC
Confidence            567788888888888888777777777666666666665       77777888877775443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=86.51  E-value=16  Score=31.82  Aligned_cols=72  Identities=11%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 008065          471 SQLEIVELRHSVEELRAESSLLKEHLEAQAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEISRWK  542 (579)
Q Consensus       471 sqlEI~eLrhsLEEsRsEs~~Lq~l~E~QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~RWK  542 (579)
                      ++..+..+...+.........+......-...+......+..++..-.-+...+.++-..+..++..+..+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  250 (284)
T 1c1g_A          179 AEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE  250 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444333333333333233333444444444444444444444444444444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=82.42  E-value=35  Score=32.51  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 008065          462 GALENIVKASQLEIVELRHSVEELRAESSLLKEHLEA--QAKELSHRMKRIEELEEKERIANESVEGLMLDIAAAEEEIS  539 (579)
Q Consensus       462 salEniMK~sqlEI~eLrhsLEEsRsEs~~Lq~l~E~--QaKeIa~~~~~IkELEErErvl~enVEeLm~dIkaAEEEi~  539 (579)
                      ..+...++.+..+|..+...++..+.-..+.+..+..  =.+++..+++.|.-++.+-..+...+-++|..|.+.+.++.
T Consensus        49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~  128 (256)
T 3na7_A           49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE  128 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555444321  01333444444444444444444444444444444443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00