Citrus Sinensis ID: 008097
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | 2.2.26 [Sep-21-2011] | |||||||
| Q84VG6 | 626 | Pentatricopeptide repeat- | yes | no | 0.859 | 0.792 | 0.582 | 1e-179 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.889 | 0.686 | 0.261 | 8e-56 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.819 | 0.647 | 0.297 | 1e-54 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.717 | 0.658 | 0.322 | 9e-51 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.708 | 0.635 | 0.290 | 4e-50 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.698 | 0.673 | 0.289 | 4e-50 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.726 | 0.676 | 0.288 | 2e-49 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.873 | 0.668 | 0.253 | 1e-48 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.705 | 0.549 | 0.285 | 1e-48 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.651 | 0.620 | 0.284 | 5e-48 |
| >sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 628 bits (1620), Expect = e-179, Method: Compositional matrix adjust.
Identities = 300/515 (58%), Positives = 383/515 (74%), Gaps = 19/515 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI PPD++IF+T+IRG GRAR+I V+ DLVS+F + PSLK+FNSILDVLVKED
Sbjct: 102 MPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKED 161
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR F+ +KMMASG+ GD YTY ILMKGL LTNR+GDGFKLL +MK+ GV PN+V+YN
Sbjct: 162 IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYN 221
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LCKNGKVGRARSLMS+M+EPNDVTF+ILI AYC E+ L+ ++VLLEK FS GFVP
Sbjct: 222 TLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVP 281
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A+E+LE +G LGK++ RF
Sbjct: 282 DVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFF 341
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
EMERKG LPNV+TYN+LI+ YC+ G+LDSALD FNDMK D I WNF T++TLIRGL G
Sbjct: 342 IEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIG 401
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR DDGLKIL++M+DS RI PYN V+YG Y+EN+ ++ALE+L +MEKLFPRAVDR
Sbjct: 402 GRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDR 461
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S K++ C G ++D K +DQMI EGGVP++++ CLIH Y Q ++ E+ EL+ +M
Sbjct: 462 SFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVT 521
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GYLP +STFN V+ G C+Q V +K V EDM RG +P + Y+PL++ LC KG
Sbjct: 522 RGYLPRSSTFNAVIIGFCKQDKVMNGIKFV-EDM--AERGCVPDTESYNPLLEELCVKGD 578
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499
Q A +L +MV K I+PD W+SL+ CLSQ+T
Sbjct: 579 IQKAWLLFSRMVEKSIVPDPSMWSSLMFCLSQKTA 613
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (556), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 156/596 (26%), Positives = 280/596 (46%), Gaps = 83/596 (13%)
Query: 12 SIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV--KEDIDLARAFYR 69
S+F V++ R +I+ + L P + +N++LD + K +I A +
Sbjct: 135 SVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF- 193
Query: 70 KKMMASGVQGDDYTYAILMKGLCLT----------------------------------- 94
K+M+ S V + +TY IL++G C
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 95 NRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP----NDVTF 150
++ DGFKLL M +G++PN + YN +I+ LC+ G++ ++++M ++VT+
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 151 SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGE 210
+ LI YCKE N ALV+ + G P V+T T ++ +C G + A+E L++
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 211 QG----------------RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS 254
+G + G + R L+EM G P+V TYN LI+ +C TG ++
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 255 ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314
A+ V DMK G+S + V+Y T++ G C +D+ L++ + M + +G K Y+S+
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE--KGIKPDTITYSSL 491
Query: 315 LYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG 372
+ G + + EA + ++M + L P + I +C++G++E A + ++M+E+G
Sbjct: 492 IQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 373 VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT---------------V 417
+P+VV Y LI+ ++ R REA L+ ++ +P T++T +
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611
Query: 418 LSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477
+ G C +G + A ++ E +G+ P Y+ +I C G + A L +MV
Sbjct: 612 IKGFCMKGMMTEADQVFES---MLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVK 668
Query: 478 KGILPDYLTWNSLLICLSQQTTWLLLLLLNEMVSFVMVVHELSAKEKRCKLRSLNH 533
G L +T +L+ L ++ + LN ++ V+ ELS E+ L +NH
Sbjct: 669 SGFLLHTVTVIALVKALHKEGK---VNELNSVIVHVLRSCELSEAEQAKVLVEINH 721
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 150/504 (29%), Positives = 243/504 (48%), Gaps = 31/504 (6%)
Query: 11 ESIFITVIRGLGRARMINDVVKAT-DLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYR 69
ES+FI+++R +A + ++ + ++ P+ K +N +L++LV + A
Sbjct: 146 ESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVF 205
Query: 70 KKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKN 129
M++ + +T+ ++MK C N + LL M G PNSVIY TLIHSL K
Sbjct: 206 YDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKC 265
Query: 130 GKVGRARSLMSDME----EPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTI 185
+V A L+ +M P+ TF+ +I CK + + A ++ + GF PD +T
Sbjct: 266 NRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITY 325
Query: 186 TKVLELLCSVGRVMDAVEILEESGE---------------QGRLGKVKGGCRFLKEM-ER 229
++ LC +GRV A ++ + GRL K L +M
Sbjct: 326 GYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKA---VLSDMVTS 382
Query: 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD 289
G +P+V TYN LI Y + G++ AL+V +DM+ G N +Y L+ G C G+ID+
Sbjct: 383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDE 442
Query: 290 GLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLK 347
+L M S +G K +N ++ +E++ EA+E ++M + P +
Sbjct: 443 AYNVLNEM--SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGY 407
I G C ++ A MI EG V N V Y+ LI+A+ + ++EA +L+ EM G
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQS 467
T+N+++ GLCR G V A L E+ +R G P + + LI LC G +
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD---GHAPSNISCNILINGLCRSGMVEE 617
Query: 468 ASMLLVQMVGKGILPDYLTWNSLL 491
A +MV +G PD +T+NSL+
Sbjct: 618 AVEFQKEMVLRGSTPDIVTFNSLI 641
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 201 bits (512), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 144/446 (32%), Positives = 217/446 (48%), Gaps = 32/446 (7%)
Query: 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDL 63
++ P+ F T+I GL ++ V D + P L + ++++ L K DIDL
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 64 ARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLI 123
A + KKM ++ D Y ++ LC V D L M ++G++PN V YN+LI
Sbjct: 239 ALSLL-KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Query: 124 HSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFV 179
LC G+ A L+SDM E PN VTFS LI A+ KE LV A L ++
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357
Query: 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239
PD+ T + ++ C R+ +A + E M K C PNV TY
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFEL-------------------MISKDCFPNVVTY 398
Query: 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMED 299
N LI +C+ ++ +++F +M G+ N VTY+TLI+GL G D KI + M
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM-- 456
Query: 300 SKEGSKGRISPYNSVLYGLYRENQQDEAL---EYLKQMEKLFPRAVDRSLKILGFCVDGN 356
+G I Y+ +L GL + + ++AL EYL Q K+ P ++ I G C G
Sbjct: 457 VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGK 515
Query: 357 VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT 416
VED F + +G PNV+IY +I +C++ EA L +EM G LP + T+NT
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNT 575
Query: 417 VLSGLCRQGNVGTALKLVEEDMRGIG 442
++ R G+ + +L++E MR G
Sbjct: 576 LIRARLRDGDKAASAELIKE-MRSCG 600
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 132/455 (29%), Positives = 230/455 (50%), Gaps = 46/455 (10%)
Query: 31 VKATDLVSRFN------MTPSLKIFNSILDVLVK-EDIDLARAFYRKKMMASGVQGDDYT 83
+KA D V F P++ FN + + K + +L A K+M + G+ YT
Sbjct: 67 IKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALC-KQMESKGIAHSIYT 125
Query: 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143
+I++ C ++ F + + G +P++VI+NTL++ LC +V A L+ M
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 144 E----PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVM 199
E P +T + L+ C + +A+VL+++ GF P+ VT VL ++C G+
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245
Query: 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVF 259
A+E+L ++ME + + Y+I+I C+ G LD+A ++F
Sbjct: 246 LAMELL-------------------RKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 260 NDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP----YNSVL 315
N+M+I G + +TY+TLI G C+ GR DDG K+L+ M K +ISP ++ ++
Sbjct: 287 NEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM------IKRKISPNVVTFSVLI 340
Query: 316 YGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV 373
+E + EA + LK+M + + P + + I GFC + +E+A + D MI +G
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCD 400
Query: 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL 433
P+++ ++ LI+ YC+ R+ + EL +EM+ G + T+NT++ G C+ G + A KL
Sbjct: 401 PDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460
Query: 434 VEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSA 468
+E + R P Y L+ LC+ G + A
Sbjct: 461 FQE---MVSRRVRPDIVSYKILLDGLCDNGELEKA 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/435 (28%), Positives = 226/435 (51%), Gaps = 32/435 (7%)
Query: 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--- 144
++ + T + +GFK L M G P+ + TLI C+ GK +A ++ +E
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 145 -PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVE 203
P+ +T++++I YCK + NAL +L++ PDVVT +L LC G++ A+E
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDR---MSVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 204 ILEESGEQG----------------RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYC 247
+L+ ++ R V + L EM +GC P+V TYN+L++ C
Sbjct: 226 VLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285
Query: 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307
+ G LD A+ NDM G N +T++ ++R +CS GR D K+L M ++G
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADM--LRKGFSPS 343
Query: 308 ISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFD 365
+ +N ++ L R+ A++ L++M + P ++ + + GFC + ++ A +
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Query: 366 QMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG 425
+M+ G P++V Y+ ++ A C++ +V +A E++ +++ G P+ T+NTV+ GL + G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463
Query: 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYL 485
G A+KL++E MR + P + YS L+ L +G A + GI P+ +
Sbjct: 464 KTGKAIKLLDE-MR--AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAV 520
Query: 486 TWNSLL--ICLSQQT 498
T+NS++ +C S+QT
Sbjct: 521 TFNSIMLGLCKSRQT 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/461 (28%), Positives = 230/461 (49%), Gaps = 42/461 (9%)
Query: 27 INDVVKATDLVSRFNMTPSLKIFNSILDVLVK-EDIDLARAFYRKKMMASGVQGDDYTYA 85
+ND + + + + P+ FN + + + + DL F K M +G++ D YT
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFC-KGMELNGIEHDMYTMT 109
Query: 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE- 144
I++ C ++ F +L G +P+++ ++TL++ C G+V A +L+ M E
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 145 ---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDA 201
P+ VT S LI C + + ALVL+++ +GF PD VT VL LC G A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 202 VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFND 261
+++ ++ME + +V Y+I+I S C+ G D AL +FN+
Sbjct: 230 LDLF-------------------RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 270
Query: 262 MKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR-----ISPYNSVLY 316
M++ GI + VTY +LI GLC+ G+ DDG K+L+ M GR + +++++
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREM-------IGRNIIPDVVTFSALID 323
Query: 317 GLYRENQQDEALEYLKQM--EKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP 374
+E + EA E +M + P + + I GFC + + +A + FD M+ +G P
Sbjct: 324 VFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383
Query: 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLV 434
++V Y LI++YC+ +RV + L +E++ G +P T+NT++ G C+ G + A +L
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443
Query: 435 EEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475
+E + RG P Y L+ LC+ G A + +M
Sbjct: 444 QE---MVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 154/608 (25%), Positives = 274/608 (45%), Gaps = 104/608 (17%)
Query: 12 SIFITVIRGLGRARMINDVVKATD-LVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRK 70
S F+ +I + + ++++ D ++ F + P +N +L++LV +
Sbjct: 119 STFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHA 178
Query: 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPN--------------- 115
KM G++ D T+ +L+K LC +++ +L M S G+ P+
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 116 --------------------SVIYNTLIHSLCKNGKVGRARSLMSDMEE-----PNDVTF 150
+V N ++H CK G+V A + + +M P+ TF
Sbjct: 239 DLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTF 298
Query: 151 SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGE 210
+ L+ CK ++ +A+ +++ G+ PDV T V+ LC +G V +AVE+L++
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 211 QG----------------RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS 254
+ + +V+ + + KG LP+V T+N LI C T
Sbjct: 359 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRV 418
Query: 255 ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314
A+++F +M+ G + TY+ LI LCS G++D+ L +L+ ME S G + YN++
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS--GCARSVITYNTL 476
Query: 315 LYGLYRENQQDEALEYLKQME--KLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG 372
+ G + N+ EA E +ME + +V + I G C VEDA + DQMI EG
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ 536
Query: 373 VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432
P+ Y+ L+ +C+ +++A+++++ MT +G P T+ T++SGLC+ G V A K
Sbjct: 537 KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASK 596
Query: 433 LVEE-DMRGIG--------------------------------RGSLPGSGHYSPLIKAL 459
L+ M+GI + P + Y + + L
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGL 656
Query: 460 CEKGG-FQSASMLLVQMVGKGILPDYLTWNSL---LICLSQQTTWLLLLLLNEMVSFVMV 515
C GG + A LV+++ KG +P++ + L L+ LS + T L ++V+ VM
Sbjct: 657 CNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEET------LVKLVNMVMQ 710
Query: 516 VHELSAKE 523
S +E
Sbjct: 711 KARFSEEE 718
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/434 (28%), Positives = 213/434 (49%), Gaps = 27/434 (6%)
Query: 72 MMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK 131
M G D +Y+ ++ G C + +KL+ VMK +G+KPNS IY ++I LC+ K
Sbjct: 272 MELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICK 331
Query: 132 VGRARSLMSDMEE----PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITK 187
+ A S+M P+ V ++ LI +CK ++ A + S PDV+T T
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391
Query: 188 VLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFLKEMERKG 231
++ C +G +++A ++ E +G + G +K R M + G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291
C PNV TY LI C+ G LDSA ++ ++M G+ N TY++++ GLC G I++ +
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM--EKLFPRAVDRSLKIL 349
K++ E + G Y +++ + + D+A E LK+M + L P V ++ +
Sbjct: 512 KLVGEFEAA--GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569
Query: 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409
GFC+ G +ED ++ + M+ +G PN ++ L+ YC ++ A+ + K+M G P
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629
Query: 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSAS 469
T+ ++ G C+ N+ A L +E M+ G+G YS LIK ++ F A
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQE-MK--GKGFSVSVSTYSVLIKGFLKRKKFLEAR 686
Query: 470 MLLVQMVGKGILPD 483
+ QM +G+ D
Sbjct: 687 EVFDQMRREGLAAD 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/440 (28%), Positives = 221/440 (50%), Gaps = 64/440 (14%)
Query: 55 VLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKP 114
L+KE+ + K+M+ +Q + +T+ +++ LC T ++ ++ MK G P
Sbjct: 197 ALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSP 256
Query: 115 NSVIYNTLIHSLCK---NGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVNAL 167
N V YNTLI CK NGK+ +A +++ +M E PN TF+ILI + K++NL ++
Sbjct: 257 NVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSM 316
Query: 168 VLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEM 227
+ ++ P+V++ ++ LC+ G++ +A+ + ++ M
Sbjct: 317 KVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDK-------------------M 357
Query: 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRI 287
G PN+ TYN LI+ +C+ +L ALD+F +K G Y+ LI C G+I
Sbjct: 358 VSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKI 417
Query: 288 DDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLK 347
DDG + + ME +EG + YN ++ GL
Sbjct: 418 DDGFALKEEME--REGIVPDVGTYNCLIAGL----------------------------- 446
Query: 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGY 407
C +GN+E AK+ FDQ+ +G +P++V + L+ YC++ R+A+ L+KEM+ G
Sbjct: 447 ----CRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGL 501
Query: 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQS 467
P T+N V+ G C++GN+ A + + M R + Y+ L++ +KG +
Sbjct: 502 KPRHLTYNIVMKGYCKEGNLKAATNMRTQ-MEKERRLRM-NVASYNVLLQGYSQKGKLED 559
Query: 468 ASMLLVQMVGKGILPDYLTW 487
A+MLL +M+ KG++P+ +T+
Sbjct: 560 ANMLLNEMLEKGLVPNRITY 579
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| 255561437 | 629 | pentatricopeptide repeat-containing prot | 0.863 | 0.791 | 0.688 | 0.0 | |
| 359483659 | 686 | PREDICTED: pentatricopeptide repeat-cont | 0.863 | 0.725 | 0.673 | 0.0 | |
| 297740791 | 722 | unnamed protein product [Vitis vinifera] | 0.863 | 0.689 | 0.673 | 0.0 | |
| 224084127 | 584 | predicted protein [Populus trichocarpa] | 0.857 | 0.847 | 0.677 | 0.0 | |
| 356495305 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.856 | 0.799 | 0.633 | 0.0 | |
| 22325737 | 626 | pentatricopeptide repeat-containing prot | 0.859 | 0.792 | 0.582 | 1e-177 | |
| 29367150 | 532 | pentatricopeptide repeat-containing prot | 0.859 | 0.932 | 0.582 | 1e-177 | |
| 297832366 | 1056 | hypothetical protein ARALYDRAFT_343373 [ | 0.878 | 0.480 | 0.572 | 1e-176 | |
| 357484175 | 620 | Pentatricopeptide repeat-containing prot | 0.838 | 0.780 | 0.588 | 1e-173 | |
| 356498456 | 435 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.700 | 0.928 | 0.540 | 1e-129 |
| >gi|255561437|ref|XP_002521729.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539120|gb|EEF40716.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/517 (68%), Positives = 418/517 (80%), Gaps = 19/517 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MPH+I SPPDE IF+TVIRGLGRARMI V+K DL+S+F PSLKIFNSILDVLVK D
Sbjct: 98 MPHAIGSPPDEEIFLTVIRGLGRARMIPHVIKVLDLISKFGKNPSLKIFNSILDVLVKVD 157
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR FYRK+MM SGVQGDDYT+AILMKGLCLTNR+GDGF+LL VMKSRGVKPN+V+YN
Sbjct: 158 IDVAREFYRKQMMGSGVQGDDYTFAILMKGLCLTNRIGDGFRLLQVMKSRGVKPNAVVYN 217
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LCKNGKVGRARSLM ++EEPNDVTF++LI AYCKEENLV ALVLLEKSFS GFVP
Sbjct: 218 TLLHALCKNGKVGRARSLMDEIEEPNDVTFNVLIAAYCKEENLVQALVLLEKSFSLGFVP 277
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +AVE+LE +G RLGK+K RFL
Sbjct: 278 DVVTMTKVVEILCNAGRVTEAVEMLERVEYKGGLVDVVAYNTLLRGFCRLGKIKVAHRFL 337
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
KEMERKGCLPNV+TYNILIS +C++G+ D ALD+FNDMK DGISWNF TYDTLI+GL G
Sbjct: 338 KEMERKGCLPNVETYNILISGFCDSGMFDMALDMFNDMKTDGISWNFDTYDTLIKGLFFG 397
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GRI++GLKIL+LME+SK GS GRISPYNSVLYGLY++N DEALE+L +MEKLFPRAVDR
Sbjct: 398 GRIEEGLKILELMEESKGGSGGRISPYNSVLYGLYKKNMWDEALEFLMKMEKLFPRAVDR 457
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
SL+ILGFC G V++AK FDQMI EGG PN+++YDCL+H +CQE +REA ELM EM G
Sbjct: 458 SLRILGFCEKGAVKNAKMVFDQMINEGGTPNILVYDCLVHGFCQEGNLREAFELMNEMVG 517
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
HGY +AS FN ++ G C QG +ALKL+ +DM +GRG +P G YSPLI ALC KG
Sbjct: 518 HGYFLVASGFNALIHGFCGQGKDESALKLL-DDM--VGRGCVPDRGTYSPLIDALCRKGN 574
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501
FQ A + QM+ KGI PD TWNSLLI LS++ WL
Sbjct: 575 FQKALSIFNQMIEKGITPDSSTWNSLLIRLSKEIIWL 611
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483659|ref|XP_002274224.2| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/517 (67%), Positives = 418/517 (80%), Gaps = 19/517 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI SPPDESIF+T++RGLGRARM+ ++K DL+++F PSLKIFNSILDVLVKED
Sbjct: 153 MPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKED 212
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
IDLAR FYRKKMM +GV GDDYT+ ILMKGLCLTNR+GD FKLL VMKSRG PN+VIYN
Sbjct: 213 IDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYN 272
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
T+IH+LCKNGKVGRARSLM++M EP+DVTF++LI AYC+EENLV ALVLLEKSFS GFVP
Sbjct: 273 TMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVP 332
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT TKV+ +LC GRV + VE+LE G LGK K G R L
Sbjct: 333 DVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVL 392
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
K+ME KGCLPNVDTYNIL S YC++G+LDSA+D+FNDMK DGI+WNF+TYDTLIRGLCSG
Sbjct: 393 KDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSG 452
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR++DG KIL+LME+S+ G+ GRISPYNS++YGLY++NQ +EALE+L +MEKLFPRAVDR
Sbjct: 453 GRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDR 512
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
SL+ILGFC +G++ DAKR +DQMI+EGGVP+V++Y CLIH +CQ+ VREA EL+ EM
Sbjct: 513 SLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVD 572
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
HGY P A TFN ++S C QG VG+ALKL+ EDM +GRG LP G YSP++ ALC KG
Sbjct: 573 HGYFPTAPTFNALISAFCGQGKVGSALKLM-EDM--VGRGCLPDMGSYSPMVDALCNKGD 629
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501
FQ A L +QMV K ILPDY TWNS+L+CL+Q+T WL
Sbjct: 630 FQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQETVWL 666
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740791|emb|CBI30973.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/517 (67%), Positives = 418/517 (80%), Gaps = 19/517 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI SPPDESIF+T++RGLGRARM+ ++K DL+++F PSLKIFNSILDVLVKED
Sbjct: 1 MPSSIGSPPDESIFVTIVRGLGRARMVRQMIKVLDLITKFGENPSLKIFNSILDVLVKED 60
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
IDLAR FYRKKMM +GV GDDYT+ ILMKGLCLTNR+GD FKLL VMKSRG PN+VIYN
Sbjct: 61 IDLAREFYRKKMMMNGVSGDDYTFGILMKGLCLTNRIGDAFKLLQVMKSRGKTPNTVIYN 120
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
T+IH+LCKNGKVGRARSLM++M EP+DVTF++LI AYC+EENLV ALVLLEKSFS GFVP
Sbjct: 121 TMIHALCKNGKVGRARSLMNEMVEPSDVTFNVLISAYCQEENLVQALVLLEKSFSMGFVP 180
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT TKV+ +LC GRV + VE+LE G LGK K G R L
Sbjct: 181 DVVTATKVVGILCKAGRVTEGVEVLERVESMGGVVDVVAYNTLIKGFCMLGKAKVGHRVL 240
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
K+ME KGCLPNVDTYNIL S YC++G+LDSA+D+FNDMK DGI+WNF+TYDTLIRGLCSG
Sbjct: 241 KDMEIKGCLPNVDTYNILASGYCDSGMLDSAIDLFNDMKTDGINWNFMTYDTLIRGLCSG 300
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR++DG KIL+LME+S+ G+ GRISPYNS++YGLY++NQ +EALE+L +MEKLFPRAVDR
Sbjct: 301 GRMEDGFKILELMEESRGGAGGRISPYNSIIYGLYKKNQFEEALEFLTKMEKLFPRAVDR 360
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
SL+ILGFC +G++ DAKR +DQMI+EGGVP+V++Y CLIH +CQ+ VREA EL+ EM
Sbjct: 361 SLRILGFCNEGSIGDAKRVYDQMIKEGGVPSVLVYVCLIHGFCQDGNVREAFELINEMVD 420
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
HGY P A TFN ++S C QG VG+ALKL+ EDM +GRG LP G YSP++ ALC KG
Sbjct: 421 HGYFPTAPTFNALISAFCGQGKVGSALKLM-EDM--VGRGCLPDMGSYSPMVDALCNKGD 477
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501
FQ A L +QMV K ILPDY TWNS+L+CL+Q+T WL
Sbjct: 478 FQKAVRLFLQMVEKDILPDYSTWNSMLLCLTQETVWL 514
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa] gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/514 (67%), Positives = 413/514 (80%), Gaps = 19/514 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI PPDESIF+T+IRGLGRARMI DV+K DLV+R+ PSLKIFNSILDVLVKED
Sbjct: 74 MPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVKED 133
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
IDLAR FYRKKMM +G+QGDDYTY ILMKGLCLTNR+G+GFKLL V+KSRG+KPN VIYN
Sbjct: 134 IDLARKFYRKKMMGAGIQGDDYTYGILMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYN 193
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LC NGKVGRARSLM++++EPNDVTF++LIC YCKE+N V ALVLLEKSFS GFVP
Sbjct: 194 TLLHALCNNGKVGRARSLMNEIKEPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVP 253
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+VGRV +AVEILE +G + GKVK G L
Sbjct: 254 DVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLL 313
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
KEMERKGCLPN DTYN LIS +CE+G+L+SALD+FNDMK DGI+ NFVT+DTLI+GL S
Sbjct: 314 KEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCNFVTFDTLIKGLFSR 373
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR +DG KIL+LME+++ G ISPYNSVLYGLYR+N +EALE+L +ME LFPRAVDR
Sbjct: 374 GRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDR 433
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
SL+ILGFC +G +++AKR +DQM EGG+P+ ++YDCLIH +CQE VREA ELM EM
Sbjct: 434 SLRILGFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVF 493
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GY P+ASTFN ++SG CR G G+ALKL+ EDM +GRG +P +G YSPLI ALC K
Sbjct: 494 LGYFPVASTFNALISGFCRLGKDGSALKLL-EDM--VGRGCVPDTGSYSPLIDALCRKKS 550
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQT 498
FQ A+ LL+QMV GI PDYL WNSL CLSQQT
Sbjct: 551 FQKAASLLLQMVENGITPDYLIWNSLFHCLSQQT 584
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495305|ref|XP_003516519.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/513 (63%), Positives = 398/513 (77%), Gaps = 19/513 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MPHS+ +PP + IFIT+IRGLGRARM V+K DLV +F+ +PSLKIFNSILDVLVKED
Sbjct: 95 MPHSLGAPPGDDIFITIIRGLGRARMTRTVIKVLDLVYKFHGSPSLKIFNSILDVLVKED 154
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR FYRK MMASGV+GDDYT+ ILMKGLCLTNR+G+GFKLL ++KSRGV PN+V+YN
Sbjct: 155 IDMAREFYRKSMMASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGVAPNTVVYN 214
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LC+NGKVGRAR+LM++ME+PNDVTF+ILI YCKE N V ALVLLEKSFS GFVP
Sbjct: 215 TLLHALCRNGKVGRARNLMNEMEDPNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVP 274
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRL----------------GKVKGGCRFL 224
DVV++TKVLE+LC+ GR M+A E+LE G L GKVK G FL
Sbjct: 275 DVVSVTKVLEILCNAGRTMEAAEVLERVESMGGLLDVVAYNTLIKGFCGAGKVKVGLHFL 334
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
K+ME KGCLPNVDTYN+LIS + E+G+LD ALD+FNDMK DGI WNFVT+DTLIRGLCS
Sbjct: 335 KQMENKGCLPNVDTYNVLISGFSESGMLDLALDLFNDMKTDGIKWNFVTFDTLIRGLCSE 394
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
RI+DG IL+LME+SKEGS+G ISPYNS++YGL ++N DE+ E+L +M LFPRAVDR
Sbjct: 395 ERIEDGFSILELMEESKEGSRGHISPYNSIIYGLLKKNGFDESAEFLTKMGNLFPRAVDR 454
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
SL IL C G +EDAKR +DQMI+EGG+P++++Y+CL+H + ++ VREA ELM EM
Sbjct: 455 SLMILEHCKKGAIEDAKRVYDQMIDEGGIPSILVYNCLVHGFSKQGNVREAVELMNEMIA 514
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
+ PI STFN V++G CRQG V +ALKLVE+ RG +P + YSPLI LC G
Sbjct: 515 NNCFPIPSTFNAVITGFCRQGKVESALKLVEDI---TARGCVPNTETYSPLIDVLCRNGD 571
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQ 497
Q A + +QMV KGILPD WNSLL+ LSQ+
Sbjct: 572 LQKAMQVFMQMVDKGILPDLFIWNSLLLSLSQE 604
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22325737|ref|NP_671862.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546776|sp|Q84VG6.2|PP160_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17525, mitochondrial; Flags: Precursor gi|330251547|gb|AEC06641.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/515 (58%), Positives = 383/515 (74%), Gaps = 19/515 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI PPD++IF+T+IRG GRAR+I V+ DLVS+F + PSLK+FNSILDVLVKED
Sbjct: 102 MPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKED 161
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR F+ +KMMASG+ GD YTY ILMKGL LTNR+GDGFKLL +MK+ GV PN+V+YN
Sbjct: 162 IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYN 221
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LCKNGKVGRARSLMS+M+EPNDVTF+ILI AYC E+ L+ ++VLLEK FS GFVP
Sbjct: 222 TLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVP 281
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A+E+LE +G LGK++ RF
Sbjct: 282 DVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFF 341
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
EMERKG LPNV+TYN+LI+ YC+ G+LDSALD FNDMK D I WNF T++TLIRGL G
Sbjct: 342 IEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIG 401
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR DDGLKIL++M+DS RI PYN V+YG Y+EN+ ++ALE+L +MEKLFPRAVDR
Sbjct: 402 GRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDR 461
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S K++ C G ++D K +DQMI EGGVP++++ CLIH Y Q ++ E+ EL+ +M
Sbjct: 462 SFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVT 521
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GYLP +STFN V+ G C+Q V +K V EDM RG +P + Y+PL++ LC KG
Sbjct: 522 RGYLPRSSTFNAVIIGFCKQDKVMNGIKFV-EDM--AERGCVPDTESYNPLLEELCVKGD 578
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499
Q A +L +MV K I+PD W+SL+ CLSQ+T
Sbjct: 579 IQKAWLLFSRMVEKSIVPDPSMWSSLMFCLSQKTA 613
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29367150|gb|AAO72718.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/515 (58%), Positives = 383/515 (74%), Gaps = 19/515 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI PPD++IF+T+IRG GRAR+I V+ DLVS+F + PSLK+FNSILDVLVKED
Sbjct: 1 MPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKED 60
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR F+ +KMMASG+ GD YTY ILMKGL LTNR+GDGFKLL +MK+ GV PN+V+YN
Sbjct: 61 IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYN 120
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LCKNGKVGRARSLMS+M+EPNDVTF+ILI AYC E+ L+ ++VLLEK FS GFVP
Sbjct: 121 TLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVP 180
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A+E+LE +G LGK++ RF
Sbjct: 181 DVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFF 240
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
EMERKG LPNV+TYN+LI+ YC+ G+LDSALD FNDMK D I WNF T++TLIRGL G
Sbjct: 241 IEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIG 300
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR DDGLKIL++M+DS RI PYN V+YG Y+EN+ ++ALE+L +MEKLFPRAVDR
Sbjct: 301 GRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDR 360
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S K++ C G ++D K +DQMI EGGVP++++ CLIH Y Q ++ E+ EL+ +M
Sbjct: 361 SFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVT 420
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GYLP +STFN V+ G C+Q V +K V EDM RG +P + Y+PL++ LC KG
Sbjct: 421 RGYLPRSSTFNAVIIGFCKQDKVMNGIKFV-EDMA--ERGCVPDTESYNPLLEELCVKGD 477
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499
Q A +L +MV K I+PD W+SL+ CLSQ+T
Sbjct: 478 IQKAWLLFSRMVEKSIVPDPSMWSSLMFCLSQKTA 512
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297832366|ref|XP_002884065.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp. lyrata] gi|297329905|gb|EFH60324.1| hypothetical protein ARALYDRAFT_343373 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/526 (57%), Positives = 388/526 (73%), Gaps = 19/526 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP S PPD++IF+T+IRG GRAR+ V+ DLVS+F + PSLK+FNSILDVLVKED
Sbjct: 90 MPESTGLPPDDAIFVTIIRGFGRARLTKRVISVVDLVSKFGIKPSLKVFNSILDVLVKED 149
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR F+R+KMMASG+QGD+YTY ILMKGLCLTNR+GDGFKLL +MK+ GV PN+V+YN
Sbjct: 150 IDIAREFFRRKMMASGIQGDEYTYGILMKGLCLTNRIGDGFKLLQIMKTCGVAPNTVVYN 209
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LCKNGKVGRARSLMS+M+EPNDVTF+ILI AYC E+ L+ ++VLLEK FS G VP
Sbjct: 210 TLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGLVP 269
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A+E+LE +G +GK++ RF
Sbjct: 270 DVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCAVGKMRVAQRFF 329
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
+EMERKG LPNV+TYN+LI+ +C+ G+LDSALD FNDMK D I WNF T++TLIRGL
Sbjct: 330 QEMERKGYLPNVETYNLLIAGFCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSVR 389
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR DDG+KIL+LM+DS+ RI PYNSV+YG Y+EN+ ++ALE+L +MEKLFPRAVDR
Sbjct: 390 GRTDDGIKILELMQDSETVHGARIDPYNSVIYGFYKENRWEDALEFLLKMEKLFPRAVDR 449
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S K++ C G ++D K +DQM EGGVP+V++ CLIH Y QE + E EL+ +M
Sbjct: 450 SFKLISLCEKGGMDDVKTAYDQMTGEGGVPSVIVSHCLIHRYSQEGYMEETLELINDMVT 509
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GYLP +STFN V+ G C++ V +K V EDM RG +P Y+PL++ LC KG
Sbjct: 510 RGYLPRSSTFNAVIIGFCKEDKVMNGIKFV-EDM--AERGCVPDRESYNPLLEELCVKGD 566
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNEMV 510
Q A +LL MV K I+PD W+SL+ CLSQ+T L L +++
Sbjct: 567 IQKAWLLLSLMVEKSIVPDSSMWSSLMFCLSQKTAIHLNTSLQDII 612
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357484175|ref|XP_003612374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513709|gb|AES95332.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/503 (58%), Positives = 378/503 (75%), Gaps = 19/503 (3%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI + P E IFIT++RGL RA M V+ DL +F+ TPSLKIFNSILDVLVKED
Sbjct: 97 MPTSIGANPGEDIFITIVRGLSRAGMTRRVITVLDLAYKFHGTPSLKIFNSILDVLVKED 156
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR FYRK MM SGV+GDDYT+ ILMKGLCLTNR+G+GFKLL ++K+ GV PN+VIYN
Sbjct: 157 IDMAREFYRKSMMESGVRGDDYTFGILMKGLCLTNRIGEGFKLLQLIKNNGVTPNTVIYN 216
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180
TL+H+LC+NGKVGRARSLM++M +PN+VTF+ILI +Y KEENLV ALVLLEK F+ VP
Sbjct: 217 TLLHALCRNGKVGRARSLMNEMVDPNEVTFNILISSYYKEENLVQALVLLEKCFALSLVP 276
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A E+LE G +GKVK G FL
Sbjct: 277 DVVTVTKVVEILCNAGRVTEAAEVLERVESLGGSLDAVAYNTLIKGFCGVGKVKVGLHFL 336
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
K+ME KG LPNVDTYNILI +CE+ +LD ALD+FNDMK DGI+ NFVT+DT+IRGLCS
Sbjct: 337 KQMENKGYLPNVDTYNILIYGFCESRMLDLALDLFNDMKTDGINRNFVTFDTMIRGLCSE 396
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GRI+DG IL+LME++KEGSKG ISPYNS++YGL+++N+ DEA E+L +M KLFPRAVDR
Sbjct: 397 GRIEDGFSILELMEETKEGSKGHISPYNSIIYGLFKQNRFDEASEFLAKMGKLFPRAVDR 456
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S+ I+ C +G +EDAK +D+MI+EGG+P++++Y+ L+H + Q +REA EL+ EM
Sbjct: 457 SMTIIQKCKEGAIEDAKNIYDKMIDEGGIPSILVYNSLVHGFSQHGSIREAVELINEMIS 516
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
+ PIASTFN +++ C QG + +ALK +E+ RG +P + YSPLI LC KG
Sbjct: 517 NNCFPIASTFNAIITEFCEQGKIESALKFMEDIT---ARGCVPNTETYSPLIDVLCRKGD 573
Query: 465 FQSASMLLVQMVGKGILPDYLTW 487
Q A + ++MV KGILPD W
Sbjct: 574 IQKALQVFLEMVEKGILPDQCIW 596
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498456|ref|XP_003518068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g17525, mitochondrial-like, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/431 (54%), Positives = 306/431 (70%), Gaps = 27/431 (6%)
Query: 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143
+ ILMKGLCLTNR+ +GFKLL ++KSRGV N+++YNTLIH+LC+NG+VGRAR+LM++M+
Sbjct: 1 FXILMKGLCLTNRIVEGFKLLQLIKSRGVASNTMVYNTLIHALCRNGEVGRARNLMNEMK 60
Query: 144 EPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVE 203
+PNDVTF+ILI Y KE N V AL+LLEKSFS GFVPDVV++T VLE+LC+VG ++A E
Sbjct: 61 DPNDVTFNILIFGYYKEGNSVWALILLEKSFSMGFVPDVVSVTMVLEILCNVGCTIEAAE 120
Query: 204 ILEESGEQGRL----------------GKVKGGCRFLKEMERKGCLPNVDTYNILISSYC 247
+L+ G L G VK G FLK+ME KGCLPNVDTYN+LIS +C
Sbjct: 121 VLDXIESMGGLLDVVAXNTLIKGFCEAGNVKVGLHFLKQMESKGCLPNVDTYNVLISGFC 180
Query: 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307
E+ +LD LD+FNDMK DGI WNFVT+DT+IRGLCS GRI+DG IL+ ME+SKEGS+G
Sbjct: 181 ESKMLDLVLDLFNDMKTDGIKWNFVTFDTIIRGLCSEGRIEDGFSILESMEESKEGSRGH 240
Query: 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQM 367
I+PYNS++YGL ++N D+ E+L +M LFPR VD+SL I C G++EDA+R DQM
Sbjct: 241 INPYNSIIYGLLKQNXFDDTTEFLTKMGNLFPRVVDKSLMIFEHCKKGSIEDAERLCDQM 300
Query: 368 IEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427
I+EGG+ ++++Y+CL+H + Q+ R+ EA ELM EM + PI STFN V+ V
Sbjct: 301 IDEGGISSILVYNCLVHGFSQQGRIXEAVELMNEMIANNRFPIPSTFNVVIX-------V 353
Query: 428 GTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLT 486
ALKLVEE RG +P + YS LI LC A + ++M+ K GILPD
Sbjct: 354 EGALKLVEEI---TARGCVPNTETYSSLIDVLCRNENLXKAMXVFMEMIDKGGILPDQFI 410
Query: 487 WNSLLICLSQQ 497
WNS+L+ L+ +
Sbjct: 411 WNSMLLRLTSE 421
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 577 | ||||||
| TAIR|locus:504955997 | 626 | AT2G17525 [Arabidopsis thalian | 0.857 | 0.790 | 0.571 | 2.4e-156 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.642 | 0.508 | 0.294 | 5.3e-35 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.734 | 0.567 | 0.283 | 7.9e-46 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.712 | 0.545 | 0.291 | 5.2e-44 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.755 | 0.729 | 0.266 | 8.1e-44 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.812 | 0.512 | 0.256 | 3.1e-42 | |
| TAIR|locus:2827701 | 874 | AT2G17140 [Arabidopsis thalian | 0.805 | 0.532 | 0.262 | 3.5e-42 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.694 | 0.622 | 0.278 | 1.6e-40 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.726 | 0.676 | 0.268 | 2.2e-40 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.715 | 0.656 | 0.298 | 3.6e-40 |
| TAIR|locus:504955997 AT2G17525 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 294/514 (57%), Positives = 373/514 (72%)
Query: 1 MPHSIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKED 60
MP SI PPD++IF+T+IRG GRAR+I V+ DLVS+F + PSLK+FNSILDVLVKED
Sbjct: 102 MPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSKFGIKPSLKVFNSILDVLVKED 161
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
ID+AR F+ +KMMASG+ GD YTY ILMKGL LTNR+GDGFKLL +MK+ GV PN+V+YN
Sbjct: 162 IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMKTSGVAPNAVVYN 221
Query: 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKXXXXXXXXXXXXKSFSFGFVP 180
TL+H+LCKNGKVGRARSLMS+M+EPNDVTF+ILI AYC K FS GFVP
Sbjct: 222 TLLHALCKNGKVGRARSLMSEMKEPNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVP 281
Query: 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQG----------------RLGKVKGGCRFL 224
DVVT+TKV+E+LC+ GRV +A+E+LE +G LGK++ RF
Sbjct: 282 DVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFF 341
Query: 225 KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG 284
EMERKG LPNV+TYN+LI+ YC+ G+LDSALD FNDMK D I WNF T++TLIRGL G
Sbjct: 342 IEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIG 401
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
GR DDGLKIL++M+DS RI PYN V+YG Y+EN+ ++ALE+L +MEKLFPRAVDR
Sbjct: 402 GRTDDGLKILEMMQDSDTVHGARIDPYNCVIYGFYKENRWEDALEFLLKMEKLFPRAVDR 461
Query: 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404
S K++ C G ++D K +DQMI EGGVP++++ CLIH Y Q ++ E+ EL+ +M
Sbjct: 462 SFKLISLCEKGGMDDLKTAYDQMIGEGGVPSIIVSHCLIHRYSQHGKIEESLELINDMVT 521
Query: 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGG 464
GYLP +STFN V+ G C+Q V +K VE DM RG +P + Y+PL++ LC KG
Sbjct: 522 RGYLPRSSTFNAVIIGFCKQDKVMNGIKFVE-DMAE--RGCVPDTESYNPLLEELCVKGD 578
Query: 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQT 498
Q A +L +MV K I+PD W+SL+ CLSQ+T
Sbjct: 579 IQKAWLLFSRMVEKSIVPDPSMWSSLMFCLSQKT 612
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 5.3e-35, P = 5.3e-35
Identities = 117/397 (29%), Positives = 188/397 (47%)
Query: 113 KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKXXXXXXXXXXXXK 172
K +V+ L+ C ++S P TF +++ A+C
Sbjct: 183 KSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRD 242
Query: 173 SFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVK-------GGCRF-- 223
G VP+ V ++ L RV +A+++LEE G + + G C+F
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 224 ----LKEMER---KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDT 276
K + R +G P+ TY L++ C+ G +D+A D+F + I V ++T
Sbjct: 303 INEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEI----VIFNT 358
Query: 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336
LI G + GR+DD +L M S G + YNS++YG ++E ALE L M
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSY-GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRN 417
Query: 337 --LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE 394
P ++ + GFC G +++A ++M +G PN V ++CLI A+C+E R+ E
Sbjct: 418 KGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPE 477
Query: 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454
A E+ +EM G P TFN+++SGLC + AL L+ DM I G + + Y+
Sbjct: 478 AVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLR-DM--ISEGVVANTVTYNT 534
Query: 455 LIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
LI A +G + A L+ +MV +G D +T+NSL+
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLI 571
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 485 (175.8 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 134/473 (28%), Positives = 224/473 (47%)
Query: 42 MTPSLKIFNSIL-DVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDG 100
++P++ +N ++ +ID+A + KM G + TY L+ G C ++ DG
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLF-DKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 101 FKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP----NDVTFSILICA 156
FKLL M +G++PN + YN +I+ LC+ G++ ++++M ++VT++ LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 157 YCKXXXXXXXXXXXXKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGK 216
YCK + G P V+T T ++ +C G + A+E L++ +
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM-------R 372
Query: 217 VKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDT 276
V+G C PN TY L+ + + G ++ A V +M +G S + VTY+
Sbjct: 373 VRGLC------------PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 277 LIRGLCSGGRIDDGLKILQLMEDSKE-GSKGRISPYNSVLYGLYRENQQDEALEYLKQM- 334
LI G C G+++D + +L ED KE G + Y++VL G R DEAL ++M
Sbjct: 421 LINGHCVTGKMEDAIAVL---EDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Query: 335 EK-LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393
EK + P + S I GFC ++A +++M+ G P+ Y LI+AYC E +
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLE 537
Query: 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYS 453
+A +L EM G LP T++ +++GL +Q A +L+ ++ S+P Y
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL---LKLFYEESVPSDVTYH 594
Query: 454 PLI---------------KALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
LI K C KG A + M+GK PD +N ++
Sbjct: 595 TLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMI 647
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 5.2e-44, P = 5.2e-44
Identities = 129/442 (29%), Positives = 218/442 (49%)
Query: 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAF 67
PD S F +I+ L RA + + + + + + P K F +++ ++E D+D A
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246
Query: 68 YRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSR-GVKPNSVIYNTLIHSL 126
R++M+ G + + +++ G C RV D + M ++ G P+ +NTL++ L
Sbjct: 247 -REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 127 CKNGKVGRARSLMSDM-EE---PNDVTFSILICAYCKXXXXXXXXXXXXKSFSFGFVPDV 182
CK G V A +M M +E P+ T++ +I CK + + P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 183 VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNIL 242
VT ++ LC +V +A E L +V + KG LP+V T+N L
Sbjct: 366 VTYNTLISTLCKENQVEEATE----------LARV---------LTSKGILPDVCTFNSL 406
Query: 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302
I C T A+++F +M+ G + TY+ LI LCS G++D+ L +L+ ME S
Sbjct: 407 IQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-- 464
Query: 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDA 360
G + YN+++ G + N+ EA E +ME + +V + I G C VEDA
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 524
Query: 361 KRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSG 420
+ DQMI EG P+ Y+ L+ +C+ +++A+++++ MT +G P T+ T++SG
Sbjct: 525 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Query: 421 LCRQGNVGTALKLVEE-DMRGI 441
LC+ G V A KL+ M+GI
Sbjct: 585 LCKAGRVEVASKLLRSIQMKGI 606
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 123/462 (26%), Positives = 218/462 (47%)
Query: 50 NSILDVLVKEDIDLARAF-YRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMK 108
N+ L +V+ +L F + + M+ G D L++G C + K+L +++
Sbjct: 106 NNHLRQMVRTG-ELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILE 164
Query: 109 SRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME-EPNDVTFSILICAYCKXXXXXXXX 167
G P+ + YN +I CK G++ A S++ M P+ VT++ ++ + C
Sbjct: 165 GSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAM 224
Query: 168 XXXXKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG--------------- 212
+ PDV+T T ++E C V A+++L+E ++G
Sbjct: 225 EVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGI 284
Query: 213 -RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF 271
+ G++ +FL +M GC PNV T+NI++ S C TG A + DM G S +
Sbjct: 285 CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSV 344
Query: 272 VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYL 331
VT++ LI LC G + + IL+ M + G + YN +L+G +E + D A+EYL
Sbjct: 345 VTFNILINFLCRKGLLGRAIDILEKMP--QHGCQPNSLSYNPLLHGFCKEKKMDRAIEYL 402
Query: 332 KQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389
++M +P V + + C DG VEDA +Q+ +G P ++ Y+ +I +
Sbjct: 403 ERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKA 462
Query: 390 ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGS 449
+ +A +L+ EM P T+++++ GL R+G V A+K E R G P +
Sbjct: 463 GKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFER---MGIRPNA 519
Query: 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
++ ++ LC+ A LV M+ +G P+ ++ L+
Sbjct: 520 VTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 3.1e-42, P = 3.1e-42
Identities = 128/499 (25%), Positives = 238/499 (47%)
Query: 16 TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK-EDIDLARAFYRKKMMA 74
T++ L R +++++ + + + P++ +N +++ K +++ A Y K++
Sbjct: 188 TLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQ-YVSKIVE 246
Query: 75 SGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGR 134
+G+ D +TY L+ G C + FK+ + M +G + N V Y LIH LC ++
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 135 ARSLMSDMEE----PNDVTFSILICAYCKXXXXXXXXXXXXKSFSFGFVPDVVTITKVLE 190
A L M++ P T+++LI + C + G P++ T T +++
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Query: 191 LLCSVGRVMDAVEILEESGEQGRLGKV-------KGGCR--FLKE-------MERKGCLP 234
LCS + A E+L + E+G + V G C+ +++ ME + P
Sbjct: 367 SLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426
Query: 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKIL 294
N TYN LI YC++ V A+ V N M + + VTY++LI G C G D ++L
Sbjct: 427 NTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 295 QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFC 352
LM D G Y S++ L + + +EA + +E+ + P V + I G+C
Sbjct: 486 SLMND--RGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYC 543
Query: 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS 412
G V++A ++M+ + +PN + ++ LIH C + +++EA+ L ++M G P S
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVS 603
Query: 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLL 472
T ++ L + G+ A ++ M + G+ P + Y+ I+ C +G A ++
Sbjct: 604 TDTILIHRLLKDGDFDHAYSRFQQ-M--LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMM 660
Query: 473 VQMVGKGILPDYLTWNSLL 491
+M G+ PD T++SL+
Sbjct: 661 AKMRENGVSPDLFTYSSLI 679
|
|
| TAIR|locus:2827701 AT2G17140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 455 (165.2 bits), Expect = 3.5e-42, P = 3.5e-42
Identities = 135/515 (26%), Positives = 237/515 (46%)
Query: 4 SIQSPPDESIFITVIRGLGRARMINDVVKATDLV-SRF-NMTPSLKIFNSILDVLVKED- 60
SIQ S+ ++V+ ++ I+ LV SRF PS+ ++N +L+ +KE
Sbjct: 69 SIQKTKLSSL-LSVVSIFAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERR 127
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
++ Y K M+ G+ YT+ +L++ LC ++ V +L M +G KPN +
Sbjct: 128 VEFVSWLY-KDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFG 186
Query: 121 TLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKXXXXXXXXXXXXKSFSF 176
L+ CK G + L++ ME PN V ++ ++ ++C+ K
Sbjct: 187 ILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREE 246
Query: 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV 236
G VPD+VT + LC G+V+DA I + LG + R PN
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLG-----------LPR----PNS 291
Query: 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQL 296
TYN+++ +C+ G+L+ A +F ++ + + +Y+ ++GL G+ + +L+
Sbjct: 292 ITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQ 351
Query: 297 MEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVD 354
M D G I YN ++ GL + +A + M++ + P AV + G+C
Sbjct: 352 MTDKGIGPS--IYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSV 409
Query: 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF 414
G V+ AK +M+ +PN + L+H+ + R+ EA EL+++M GY T
Sbjct: 410 GKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTC 469
Query: 415 NTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGH---------------------YS 453
N ++ GLC G + A+++V+ MR G +L G+ YS
Sbjct: 470 NIIVDGLCGSGELDKAIEIVK-GMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYS 528
Query: 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWN 488
L+ LC+ G F A L +M+G+ + PD + +N
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYN 563
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 129/463 (27%), Positives = 222/463 (47%)
Query: 31 VKATDLVSRF-NMT-----PSLKIFNSILDVLVK-EDIDLARAFYRKKMMASGVQGDDYT 83
+KA D V F +M P++ FN + + K + +L A K+M + G+ YT
Sbjct: 67 IKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALC-KQMESKGIAHSIYT 125
Query: 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143
+I++ C ++ F + + G +P++VI+NTL++ LC +V A L+ M
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 144 EPNDVTFSILICAYCKXXXXXXXXXXXXKSFSFGFVPDVVTITKVLELLCSVGRVMDAVE 203
E G P ++T+ ++ LC G+V DAV
Sbjct: 186 E-------------------------------MGHKPTLITLNTLVNGLCLNGKVSDAVV 214
Query: 204 ILEESGEQG------RLGKV-----KGG-----CRFLKEMERKGCLPNVDTYNILISSYC 247
+++ E G G V K G L++ME + + Y+I+I C
Sbjct: 215 LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307
+ G LD+A ++FN+M+I G + +TY+TLI G C+ GR DDG K+L+ M K
Sbjct: 275 KDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM--IKRKISPN 332
Query: 308 ISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFD 365
+ ++ ++ +E + EA + LK+M + + P + + I GFC + +E+A + D
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392
Query: 366 QMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG 425
MI +G P+++ ++ LI+ YC+ R+ + EL +EM+ G + T+NT++ G C+ G
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452
Query: 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSA 468
+ A KL +E M + R P Y L+ LC+ G + A
Sbjct: 453 KLEVAKKLFQE-M--VSRRVRPDIVSYKILLDGLCDNGELEKA 492
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.2e-40, P = 2.2e-40
Identities = 121/451 (26%), Positives = 218/451 (48%)
Query: 47 KIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHV 106
++ N I+D+ V + IDL + + + + + + D+ L + T +
Sbjct: 41 RLRNGIVDIKVNDAIDLFESMIQSRPLPTPI---DFNR--LCSAVARTKQYDLVLGFCKG 95
Query: 107 MKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDM----EEPNDVTFSILICAYCKXXX 162
M+ G++ + +I+ C+ K+ A S++ EP+ +TFS L+ +C
Sbjct: 96 MELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR 155
Query: 163 XXXXXXXXXKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG------RLGK 216
+ PD+VT++ ++ LC GRV +A+ +++ E G G
Sbjct: 156 VSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGP 215
Query: 217 V-----KGGCRFL-----KEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDG 266
V K G L ++ME + +V Y+I+I S C+ G D AL +FN+M++ G
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKG 275
Query: 267 ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326
I + VTY +LI GLC+ G+ DDG K+L+ M + +++++ +E + E
Sbjct: 276 IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG--RNIIPDVVTFSALIDVFVKEGKLLE 333
Query: 327 ALEYLKQM--EKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIH 384
A E +M + P + + I GFC + + +A + FD M+ +G P++V Y LI+
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 385 AYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRG 444
+YC+ +RV + L +E++ G +P T+NT++ G C+ G + A +L +E M + RG
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQE-M--VSRG 450
Query: 445 SLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475
P Y L+ LC+ G A + +M
Sbjct: 451 VPPSVVTYGILLDGLCDNGELNKALEIFEKM 481
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 3.6e-40, P = 3.6e-40
Identities = 131/439 (29%), Positives = 204/439 (46%)
Query: 9 PDESIFITVIRGLGRARMINDVVKATD-LVSRFNMTPSLKIFNSILDVLVKE-DIDLARA 66
P+ F T+I GL ++ V D +V+R P L + ++++ L K DIDLA +
Sbjct: 183 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALS 241
Query: 67 FYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSL 126
KKM ++ D Y ++ LC V D L M ++G++PN V YN+LI L
Sbjct: 242 LL-KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
Query: 127 CKNGKVGRARSLMSDMEEPNDVTFSILICAYCKXXXXXXXXXXXXKSFSFGFVPDVVTIT 186
C G+ A L+SDM E + A K + D + I
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLY------DEM-IK 353
Query: 187 KVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSY 246
+ ++ + ++ RL + K + M K C PNV TYN LI +
Sbjct: 354 RSID-----PDIFTYSSLINGFCMHDRLDEAK---HMFELMISKDCFPNVVTYNTLIKGF 405
Query: 247 CETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306
C+ ++ +++F +M G+ N VTY+TLI+GL G D KI + M +G
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS--DGVPP 463
Query: 307 RISPYNSVLYGLYRENQQDEAL---EYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRC 363
I Y+ +L GL + + ++AL EYL Q K+ P ++ I G C G VED
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 364 FDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423
F + +G PNV+IY +I +C++ EA L +EM G LP + T+NT++ R
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 424 QGNVGTALKLVEEDMRGIG 442
G+ + +L++E MR G
Sbjct: 583 DGDKAASAELIKE-MRSCG 600
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q84VG6 | PP160_ARATH | No assigned EC number | 0.5825 | 0.8596 | 0.7923 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 577 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 81/326 (24%), Positives = 149/326 (45%), Gaps = 39/326 (11%)
Query: 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNG 130
+M+ +GV+ + +T+ L+ G +V F +M+S+ VKP+ V++N LI + ++G
Sbjct: 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556
Query: 131 KVGRARSLMSDME------EPNDVTFSILICAYCKEENLVNAL---VLLEKSFSFGFVPD 181
V RA ++++M+ +P+ +T L+ A + A ++ + G P+
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-PE 615
Query: 182 VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI 241
V TI AV + G+ +M++KG P+ ++
Sbjct: 616 VYTI---------------AVNSCSQKGD------WDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK 301
L+ G LD A ++ D + GI V+Y +L+ G CS + + K L+L ED K
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAK--NWKKALELYEDIK 711
Query: 302 EGSKGR--ISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNV 357
K R +S N+++ L NQ +ALE L +M++ L P + S+ ++ +
Sbjct: 712 -SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 358 EDAKRCFDQMIEEGGVPNVVIYDCLI 383
+ Q E+G PN+V+ C+
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-15
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 114 PNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCK 159
P+ V YNTLI CK GKV A L ++M++ PN T+SILI CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC 282
P+V TYN LI YC+ G ++ AL +FN+MK GI N TY LI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-15
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 24/262 (9%)
Query: 63 LARAFYRKKMMAS-GVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRG--VKPNSVIY 119
+A+AF +M S V+ D + L+ + V F +L MK+ + P+ +
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 120 NTLIHSLCKNGKVGRARSLMSDMEEPN----DVTFSILICAYCKEENLVNALVLLEKSFS 175
L+ + G+V RA+ + + E N ++I + + ++ + AL + +
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642
Query: 176 FGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG-RLGKVK-----GGCRFLKEMER 229
G PD V + ++++ G + A EIL+++ +QG +LG V G C K ++
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 230 K----------GCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIR 279
P V T N LI++ CE L AL+V ++MK G+ N +TY L+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 280 GLCSGGRIDDGLKIL-QLMEDS 300
D GL +L Q ED
Sbjct: 763 ASERKDDADVGLDLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 3e-15
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 25/226 (11%)
Query: 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120
+D A+ Y + + ++G Y I + + MK +GVKP+ V ++
Sbjct: 595 VDRAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653
Query: 121 TLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKEENLVNALVLLEKSFSF 176
L+ G + +A ++ D + V++S L+ A +N AL L E S
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV 236
P V T+ ++ LC ++ A+E+L E M+R G PN
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSE-------------------MKRLGLCPNT 754
Query: 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC 282
TY+IL+ + D LD+ + K DGI N V + GLC
Sbjct: 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-13
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423
P+VV Y+ LI YC++ +V EA +L EM G P T++ ++ GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 6e-12
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 80 DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK 128
D TY L+ G C +V + KL + MK RG+KPN Y+ LI LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 124/566 (21%), Positives = 219/566 (38%), Gaps = 118/566 (20%)
Query: 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK--EDID 62
++ P DE ++ + R R + + + + + +++ N++L + V+ E +
Sbjct: 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139
Query: 63 LARAF-----------------YRK------------KMMASGVQGDDYTYAILMKGLCL 93
F Y K +M+ +GV+ D YT+ +++
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 94 TNRVGDGFKL-LHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSI 152
+ G ++ HV++ G + + + N LI K G V AR + M + ++++
Sbjct: 200 IPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 153 LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVL---ELLCSV--GRVMDA------ 201
+I Y + + L L PD++TIT V+ ELL GR M
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 202 -----------VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETG 250
+++ G G KV ME K + ++ +IS Y + G
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKV------FSRMETK----DAVSWTAMISGYEKNG 368
Query: 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310
+ D AL+ + M+ D +S + +T +++ G +D G+K+ +L E KG IS
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-----RKGLIS- 422
Query: 311 Y----NSVLYGLYRENQQDEALEYLKQMEKLFPR--AVDRSLKILGFCVDGNVEDAKRCF 364
Y N+++ + D+ALE + P + + I G ++ +A F
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 365 DQMIEEGGVPNVVIYDCLIHAYCQEERVREASELM--KEMTGH---------GYLPIAST 413
QM+ PN V LI A R+ LM KE+ H G+LP
Sbjct: 479 RQMLLTLK-PNSVT---LIAALSACARI---GALMCGKEIHAHVLRTGIGFDGFLP---- 527
Query: 414 FNTVLSGLCRQGNVGTALK---LVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470
N +L R G + A E+D+ ++ L+ G A
Sbjct: 528 -NALLDLYVRCGRMNYAWNQFNSHEKDV-----------VSWNILLTGYVAHGKGSMAVE 575
Query: 471 LLVQMVGKGILPDYLTWNSLLICLSQ 496
L +MV G+ PD +T+ SLL S+
Sbjct: 576 LFNRMVESGVNPDEVTFISLLCACSR 601
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 1e-10
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 19/68 (27%)
Query: 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239
PDVVT +++ C G+V +A+++ E M+++G PNV TY
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNE-------------------MKKRGIKPNVYTY 41
Query: 240 NILISSYC 247
+ILI C
Sbjct: 42 SILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.0 bits (134), Expect = 3e-10
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143
+G+KP+ V YNTLI LC+ G+V A L+ +ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 93/399 (23%), Positives = 148/399 (37%), Gaps = 68/399 (17%)
Query: 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKE---ENLVNA 166
G + + N+LI G G A + S ME + V+++ +I Y K + +
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 167 LVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226
L+E+ PD +TI VL +G + V++ E +
Sbjct: 377 YALMEQD---NVSPDEITIASVLSACACLGDLDVGVKLHELA------------------ 415
Query: 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDM-KIDGISWNFVTYDTLIRGLCSGG 285
ERKG + V N LI Y + +D AL+VF+++ + D ISW ++I GL
Sbjct: 416 -ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT-----SIIAGLRLNN 469
Query: 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS 345
R + L + M + P + L + AL K++ R
Sbjct: 470 RCFEALIFFRQM-------LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT---- 518
Query: 346 LKILGFCVDGNVEDAKRCFDQMIEEGGV-----------PNVVIYDCLIHAYCQEERVRE 394
G DG + +A D + G + +VV ++ L+ Y +
Sbjct: 519 ----GIGFDGFLPNA--LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM 572
Query: 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE--EDMRGIGRGSLPGSGHY 452
A EL M G P TF ++L R G V L+ E+ I P HY
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI----TPNLKHY 628
Query: 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
+ ++ L G A + +M I PD W +LL
Sbjct: 629 ACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263
KG P+V TYN LI C G +D A+++ ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 13/274 (4%)
Query: 72 MMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK 131
M V D+ T A ++ + G KL + + +G+ V+ N LI K
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 132 VGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLEL 191
+ +A + ++ E + ++++ +I AL+ + P+ VT+ L
Sbjct: 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSA 498
Query: 192 LCSVGRVMDAVEILEES-----GEQGRLGK------VKGGCRFLKEMERKGCLPNVDTYN 240
+G +M EI G G L V+ G + +V ++N
Sbjct: 499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN 558
Query: 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300
IL++ Y G A+++FN M G++ + VT+ +L+ G + GL+ ME+
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE- 617
Query: 301 KEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334
K + Y V+ L R + EA ++ +M
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 2e-08
Identities = 86/398 (21%), Positives = 153/398 (38%), Gaps = 63/398 (15%)
Query: 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDM 142
TY L++ + + ++S G +P+ + N ++ K G + AR L +M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 143 EEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAV 202
E N ++ +I N A L + + G + T +L +G
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 203 EILEESGEQGRLGKVKGGCRFLKEMERKG----------CLPNVDT--YNILISSYCETG 250
++ + G +G C + + G +P T +N +++ Y G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310
+ AL ++ +M+ G+S + T+ +IR + S L L+E +K+ G I
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIR-IFSR---------LALLEHAKQAHAGLIR- 353
Query: 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE 370
G + + AL VD + G +EDA+ FD+M +
Sbjct: 354 -----TGFPLDIVANTAL-------------VDL------YSKWGRMEDARNVFDRMPRK 389
Query: 371 GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVL-----SGLCRQG 425
N++ ++ LI Y R +A E+ + M G P TF VL SGL QG
Sbjct: 390 ----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKG 463
+ + E+ R P + HY+ +I+ L +G
Sbjct: 446 W--EIFQSMSENHR-----IKPRAMHYACMIELLGREG 476
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 42/228 (18%)
Query: 117 VIYNTLIHSLCKNGKVGRARSLMSDMEEP----NDVTFSILICAYCKEENLVNALVLLEK 172
V +N+++ +G A L +M + + TFSI+I + + L LLE
Sbjct: 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-------LALLEH 343
Query: 173 S-------FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLK 225
+ GF D+V T +++L GR+ DA + +
Sbjct: 344 AKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR------------------ 385
Query: 226 EMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285
M RK N+ ++N LI+ Y G A+++F M +G++ N VT+ ++ G
Sbjct: 386 -MPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440
Query: 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQ 333
+ G +I Q M ++ K R Y ++ L RE DEA +++
Sbjct: 441 LSEQGWEIFQSMSEN-HRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 2e-07
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 371 GGVPNVVIYDCLIHAYCQEERVREASELMKEM 402
G P+VV Y+ LI C+ RV EA EL+ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388
I G+C G VE+A + F++M + G PNV Y LI C+
Sbjct: 10 IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 44 PSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92
P + +N+++D K+ ++ A + +M G++ + YTY+IL+ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-NEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 72/343 (20%), Positives = 127/343 (37%), Gaps = 55/343 (16%)
Query: 72 MMASGVQGDDYTYAILMKGLCLTNRVG--DGFKLLHVMKSRGVKPNSVIYNT-LIHSLCK 128
M SGV D +T++I+++ + +R+ + K H R P ++ NT L+ K
Sbjct: 316 MRDSGVSIDQFTFSIMIR---IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 129 NGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKV 188
G++ AR++ M N ++++ LI Y A+ + E+ + G P+ VT V
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 189 LELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCE 248
L G EI F E P Y +I
Sbjct: 433 LSACRYSGLSEQGWEI------------------FQSMSENHRIKPRAMHYACMIELLGR 474
Query: 249 TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG-SKGR 307
G+LD A + F + L + RI L++ +L + G +
Sbjct: 475 EGLLDEAYAMIRRAP-------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527
Query: 308 ISPYNSVLYGLY-RENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQ 366
++ Y VL LY +Q EA + ++ +++ + L + C
Sbjct: 528 LNNY-VVLLNLYNSSGRQAEAAKVVETLKR-------KGLSMHPAC-------------T 566
Query: 367 MIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409
IE + +H E ++ ELMKE++ +GY+
Sbjct: 567 WIEVKKQDHSFFSGDRLHPQ-SREIYQKLDELMKEISEYGYVA 608
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 70/334 (20%), Positives = 132/334 (39%), Gaps = 38/334 (11%)
Query: 192 LCSVGRVMDAVEILEESGEQGRL-----------------GKVKGGCRFLKEMERKGCLP 234
L GR+ D +++LE+ ++G L VK RF K + P
Sbjct: 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----P 435
Query: 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKIL 294
+ T+N+L+S + +D AL V ++ G+ + Y TLI G++D ++
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 295 QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM--EKLFP-RAVDRSLKILGF 351
M ++ G + + + +++ G R Q +A M + + P R V +L +
Sbjct: 496 HEMVNA--GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--ISA 551
Query: 352 CVDGNVEDAKRCFDQMIEEGG-----VPNVVIYDCLIHAYCQEERVREASELMKEMTGHG 406
C G R FD + E P+ + L+ A +V A E+ + + +
Sbjct: 552 C--GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 407 YLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466
+ ++ ++G+ AL + +DM+ G P +S L+ G
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALS-IYDDMKKK--GVKPDEVFFSALVDVAGHAGDLD 666
Query: 467 SASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500
A +L +GI ++++SL+ S W
Sbjct: 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 5e-06
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460
T+NT++ G C++G V ALKL E M+ RG P YS LI LC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNE-MK--KRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 265 DGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298
G+ + VTY+TLI GLC GR+D+ +++L ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 3e-05
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 406 GYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439
G P T+NT++ GLCR G V A++L++E M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE-ME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWN 270
TYN LI C+ G ++ AL++F +MK GI +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 6e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 238 TYNILISSYCETGVLDSALDVFNDMKIDGI 267
TYN LIS YC+ G L+ AL++F +MK G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 82 YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNS 116
TY L+ GLC RV + +L MK RG++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGI 267
++TYN L+ + + G D AL V +MK G+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 452 YSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
Y+ LI C+KG + A L +M +GI P+ T++ L+
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 144 EPNDVTFSILICAYCKEENLVNALVLLEK 172
+P+ VT++ LI C+ + A+ LL++
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 117 VIYNTLIHSLCKNGKVGRARSLMSDMEE 144
V YNTLI LCK G+V A L +M+E
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 272 VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP----YNSVLYGLYR 320
VTY+TLI G C G++++ LK+ M+ I P Y+ ++ GL +
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKR------GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 117 VIYNTLIHSLCKNGKVGRARSLMSDMEE 144
V YN+LI CK GK+ A L +M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 75 SGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMK 108
G++ D TY L+ GLC RV + +LL M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409
V Y+ LI C+ RV EA EL KEM G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 272 VTYDTLIRGLCSGGRIDDGLKILQLMEDSK 301
VTY+TLI GLC GR+++ L++ + M++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 377 VIYDCLIHAYCQEERVREASELMKEMTGHG 406
V Y+ LI YC+ ++ EA EL KEM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.003
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 176 FGFVPDVVTITKVLELLCSVGRVMDAVEILEE 207
G PDVVT +++ LC GRV +AVE+L+E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 58/298 (19%), Positives = 107/298 (35%), Gaps = 53/298 (17%)
Query: 213 RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFV 272
L ++ +E G P+ N ++ + + G+L A +F++M N
Sbjct: 135 ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLA 190
Query: 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR---ISPYNSVLYGLYRENQQDEALE 329
++ T+I GL G + + + M + ++ R + S G R QQ
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC- 249
Query: 330 YLKQMEKLFPRAVDRSLKILGFCVD--------------GNVEDAKRCFDQMIEEGGVPN 375
LK G D G++EDA+ FD M E+
Sbjct: 250 ---------------VLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----T 289
Query: 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435
V ++ ++ Y EA L EM G TF+ ++ R L+ +
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA----LLEHAK 345
Query: 436 EDMRGIGRGSLPGS--GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491
+ G+ R P + + L+ + G + A + +M K + ++WN+L+
Sbjct: 346 QAHAGLIRTGFPLDIVAN-TALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALI 398
|
Length = 697 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.47 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.47 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.35 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.23 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.18 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.17 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.07 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.03 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.01 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.01 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.95 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.72 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.72 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.71 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.68 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.5 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.42 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.4 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.38 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.36 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.27 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.21 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.15 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.15 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.68 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.63 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.54 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.4 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.31 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.29 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.29 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.25 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.23 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.19 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.19 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.17 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.09 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.06 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.04 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.03 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.92 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.89 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.89 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.84 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.35 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.34 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.28 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.27 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.99 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.95 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.91 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.71 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.63 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.46 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.25 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.22 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.88 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.87 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.79 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.77 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.64 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.61 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.58 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.5 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.22 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.1 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.84 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.66 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.45 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.27 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.14 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.13 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.13 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.88 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.06 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.8 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.49 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.36 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.14 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.93 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.81 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.71 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.41 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.27 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 90.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.02 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.25 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.23 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.08 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.74 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.47 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.32 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.13 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 86.9 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.73 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.91 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.7 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.63 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 85.6 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.24 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.81 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.8 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.47 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.11 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.03 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.87 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.71 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.28 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.87 | |
| PF11663 | 140 | Toxin_YhaV: Toxin with endonuclease activity YhaV; | 82.42 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.94 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.78 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.35 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.26 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 81.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.6 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.15 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-83 Score=694.23 Aligned_cols=549 Identities=21% Similarity=0.277 Sum_probs=464.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh
Q 008097 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 5 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
.|..++..+++.|+..|++.|+++.|.++|+.|. .||+++||.+|.+|++. ++++|+++|+ .|...|+.||.+|
T Consensus 115 ~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~-~M~~~g~~Pd~~t 189 (857)
T PLN03077 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYH-RMLWAGVRPDVYT 189 (857)
T ss_pred cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCChhH
Confidence 3556777888999999999999999999999995 58999999999999999 9999999999 8999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCCh
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 163 (577)
|++++++|+..+++..+.+++..|.+.|+.||..++|+||.+|+++|++++|.++|++|++||.++||+||.+|++.|++
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----------------hhcCChhHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------~~~g~~~~a~~~~~~~ 227 (577)
++|+++|++|...|+.||..||+.++.+|++.|+.+.|.+++..+.+. .++|++++|.++|++|
T Consensus 270 ~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 349 (857)
T PLN03077 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999888775 5677777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.. ||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+. |..|+
T Consensus 350 ~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~~ 423 (857)
T PLN03077 350 ET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK--GLISY 423 (857)
T ss_pred CC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh--CCCcc
Confidence 53 4777777777777777777777777777777777777777777777666666666666666666665 55566
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---------------
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG--------------- 372 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------- 372 (577)
..+|++|+.+|++.|++++|.++|++|.+ ++..+|+.++.+|++.|+.++|..+|++|... +
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACA 500 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHh
Confidence 66666666666666666666666655543 34444444444444444444444444444321 1
Q ss_pred --------------------------------------------------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 373 --------------------------------------------------VPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 373 --------------------------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
.||..+||+||.+|+++|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 403 TGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 403 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
.+.|+.||..||++++.+|++.|++++|.++|+ .|. ..+|+.|+..||++|+++|+++|++++|.+++++|+ ++|
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~-~M~-~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~p 655 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFH-SME-EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITP 655 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH-HHH-HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCC
Confidence 999999999999999999999999999999999 776 268999999999999999999999999999999994 999
Q ss_pred CHHHHHHHHHHHHhcchHHHHHH---------HHHHHHHHHHHhhhhhhhhHHH---HHhh---HhhhcCCCCccccccC
Q 008097 483 DYLTWNSLLICLSQQTTWLLLLL---------LNEMVSFVMVVHELSAKEKRCK---LRSL---NHLAHGAGSVWLGLRI 547 (577)
Q Consensus 483 ~~~~~~~ll~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~ 547 (577)
|..+|++|+++|+.+++.++++. |.+...|++++|.|+..|+|++ +|+. +|++|.||+|||+ +
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie--~ 733 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE--V 733 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE--E
Confidence 99999999999999999987653 3345679999999999999864 4554 3899999999995 6
Q ss_pred CCeeeEEEecch-------------------hccCccccccccccc
Q 008097 548 HDTTHTFIIDRR-------------------VEIGHVFCSSSSLKD 574 (577)
Q Consensus 548 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 574 (577)
++++|.|+++|+ ...||+++++.++++
T Consensus 734 ~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 779 (857)
T PLN03077 734 KGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDE 779 (857)
T ss_pred CCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccc
Confidence 999999999995 568999999998854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-76 Score=620.57 Aligned_cols=497 Identities=20% Similarity=0.264 Sum_probs=464.1
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhc-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHH
Q 008097 43 TPSLKIFNSILDVLVKE-DIDLARAFYRKKMMAS-GVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYN 120 (577)
Q Consensus 43 ~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 120 (577)
.++..+|+.+|.++.+. ++++|+++|+ .|... +..||..+|+.++.+|++.++++.|.++|..|.+.|+.||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~-~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFE-ILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34667899999999999 9999999999 78765 478999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMD 200 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 200 (577)
.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008097 201 AVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG 280 (577)
Q Consensus 201 a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 280 (577)
+.++ +..+.+.|+.||..+||+||++|++.|++++|.++|++|. ++|..+|+++|.+
T Consensus 243 ~~~l-------------------~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~ 299 (697)
T PLN03081 243 GQQL-------------------HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAG 299 (697)
T ss_pred HHHH-------------------HHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHH
Confidence 8776 4567788999999999999999999999999999999996 5799999999999
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVE 358 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 358 (577)
|++.|+.++|.++|++|.+. |..||..+|++++.+|++.|++++|.+++..|.+ ..|+..+++.++++|+++|+++
T Consensus 300 y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 300 YALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999987 8999999999999999999999999999999987 4789999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 359 DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+|.++|++|.+ ||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+ .|
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~-~m 452 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ-SM 452 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH-HH
Confidence 99999999964 89999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred cccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHH---------HHH
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLL---------NEM 509 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~---------~~~ 509 (577)
.. .+|+.|+..||++|+++|+++|++++|.+++++| +++|+..+|++|+++|+.+|+.++++.. .+.
T Consensus 453 ~~-~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~ 528 (697)
T PLN03081 453 SE-NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL 528 (697)
T ss_pred HH-hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC
Confidence 62 6899999999999999999999999999999988 5999999999999999999999876532 234
Q ss_pred HHHHHHHhhhhhhhhHHHHHh---h---HhhhcCCCCccccccCCCeeeEEEecch-------------------hccCc
Q 008097 510 VSFVMVVHELSAKEKRCKLRS---L---NHLAHGAGSVWLGLRIHDTTHTFIIDRR-------------------VEIGH 564 (577)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------------~~~~~ 564 (577)
..|+.+++.|...|+++++.+ . .|++|.||+|||+ +++++|+|+++|. .+.||
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~--~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE--VKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE--ECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 579999999999999875444 2 3888999999995 5999999999985 45899
Q ss_pred ccccccccccCC
Q 008097 565 VFCSSSSLKDVD 576 (577)
Q Consensus 565 ~~~~~~~~~~~~ 576 (577)
+++++.++||+|
T Consensus 607 ~~~~~~~~~~~~ 618 (697)
T PLN03081 607 VAEENELLPDVD 618 (697)
T ss_pred CCCcchhhcccc
Confidence 999999999987
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-70 Score=591.18 Aligned_cols=475 Identities=17% Similarity=0.168 Sum_probs=450.1
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh
Q 008097 5 IQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 5 ~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
.|+.||..+++.|+.+|+++|++++|.++|+.|. .||.++||++|.+|++. ++++|+++|. .|...|+.||..|
T Consensus 216 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~-~M~~~g~~Pd~~t 290 (857)
T PLN03077 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF-TMRELSVDPDLMT 290 (857)
T ss_pred cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH-HHHHcCCCCChhH
Confidence 5788888999999999999999999999999995 58999999999999999 9999999999 8999999999999
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCCh
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 163 (577)
|+.++.+|++.|+++.|.++|..|.+.|+.||..+||+|+.+|+++|++++|.++|++|.+||.++||++|.+|++.|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----------------hhcCChhHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------~~~g~~~~a~~~~~~~ 227 (577)
++|+++|++|...|+.||..||+.++.+|++.|+++.|.++++.+.+. .++|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999998876 7899999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.+ +|.++||++|.+|++.|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+. |..++
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~--g~~~~ 523 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT--GIGFD 523 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh--CCCcc
Confidence 76 5999999999999999999999999999985 58999999999999999999999999999999988 89999
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..++++|+++|++.|++++|.++|+.+ .|+..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 388 QEERVREASELMKEMT-GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
+.|++++|.++|++|. +.|+.|+..+|+.++.+|++.|++++|.++++ .|. +.||..+|++|+.+|...|+.+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~-~m~-----~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN-KMP-----ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH-HCC-----CCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999 78999999999999999999999999999999 776 7899999999999998888888
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 467 SASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
.+....+++.+ +.|+. ..|..|.+.|...|+|+.
T Consensus 675 ~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 675 LGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHH
Confidence 88888888774 56654 556666778888887753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=566.05 Aligned_cols=469 Identities=20% Similarity=0.234 Sum_probs=426.1
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNM-TPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
..++...|..++..|++.|++++|+++|+.|.+.|+ .++...++.++.+|.+. ..++|..+|+ .|.. ||..+|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~-~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAK-LIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHH-HcCC----CCHHHH
Confidence 456677899999999999999999999999999885 46788888999999998 9999999998 7753 999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhc
Q 008097 85 AILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKE 160 (577)
Q Consensus 85 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 160 (577)
+.+|.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+|++||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 48999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCCCChhh
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCLPNVDT 238 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~ 238 (577)
|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++| ++|.. .|+.||..+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf-------------------~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL-------------------AEMKAETHPIDPDHIT 581 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-------------------HHHHHhcCCCCCcHHH
Confidence 999999999999999999999999999999999999988888875 55554 578899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
|+++|.+|++.|++++|.++|++|.+.|++|+..+|+.+|.+|++.|++++|.++|+.|... |..||..+|+.++.+|
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--GVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987 8899999999999999
Q ss_pred HhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 319 YRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
++.|++++|.++|++|.+ ..|+..+|+.++.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 468889999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH----cC---------
Q 008097 397 ELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE----KG--------- 463 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g--------- 463 (577)
++|++|.+.|+.||..||++++.+|++.|++++|.++|+ .|. ..|+.||..+|+++++.|.+ ++
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~-~M~--k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f 816 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS-QAK--EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSF 816 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHH--HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 999999999999999999999999999999999999999 787 78899999999999876432 22
Q ss_pred ----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHH
Q 008097 464 ----------GFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 464 ----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 504 (577)
..++|..+|++|.+.|+.||..+|+.+|.+++..+..++..
T Consensus 817 ~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~ 867 (1060)
T PLN03218 817 DSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRN 867 (1060)
T ss_pred hccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHH
Confidence 23679999999999999999999999997777777665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=557.51 Aligned_cols=481 Identities=21% Similarity=0.285 Sum_probs=445.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
++++..+++.++..|.+.|.+++|.++|+.|. .|+..+||.+|.+|++. +++.|.++|+ .|.+.|+.||..+|+
T Consensus 402 v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~-~M~~~Gl~pD~~tyn 476 (1060)
T PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLR-LVQEAGLKADCKLYT 476 (1060)
T ss_pred CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHH-HHHHcCCCCCHHHHH
Confidence 56788889999999999999999999999995 49999999999999999 9999999999 899999999999999
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhcC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKEE 161 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 161 (577)
.+|.+|++.|+++.|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|. .||.++||.||.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999997 389999999999999999
Q ss_pred ChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 162 NLVNALVLLEKSFS--FGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 162 ~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++ |+.|.+.|+.|+..+|
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el-------------------f~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV-------------------YQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH-------------------HHHHHHcCCCCChHHH
Confidence 99999999999976 68999999999999999998888887776 6778889999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|+.|.+. +..|+..+|+++|.+|+
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ--GIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987 89999999999999999
Q ss_pred hcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 320 RENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
+.|++++|.++|++|.+ ..|+..+|+.+|.+|++.|++++|.++|++|...|+.||..||++++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999976 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCR----Q-------------------GNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
+|.+|.+.|+.||..+|++++..|.+ + +..++|..+|+ .|. ..|+.||..+|+.
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~-eM~--~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR-ETI--SAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH-HHH--HCCCCCCHHHHHH
Confidence 99999999999999999999877542 1 22467999999 888 8899999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNEMVSFVMVVH 517 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (577)
++.+++..+..+.+..+++.|...+..|+..+|++|+.+|+.. ..+...+.++|....+.++
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-hHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999998888889999999999999654 2345556667665544443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=549.58 Aligned_cols=526 Identities=17% Similarity=0.234 Sum_probs=436.8
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 10 DESIFITVIRGLGRARMINDVVKATDLVSRFN-MTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
+...++.+|..|.+.|++++|+++|+.|...+ ..|+..+|+.++.++.+. +++.+.+++. .|.+.|+.||..+|+.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~-~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW-HVESSGFEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHhCCCcchHHHHHH
Confidence 44579999999999999999999999998764 678999999999999999 9999999999 89999999999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc----CCCceeHHHHHHHHHhcCCh
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME----EPNDVTFSILICAYCKEENL 163 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 163 (577)
+.+|++.|+++.|.++|++|.+ ||..+||+++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 799999999999999999999999999996 38899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh------------hhcCChhHHHHHHHHHHHcC
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ------------GRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~~~g~~~~a~~~~~~~~~~~ 231 (577)
+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|+.|... .+.|+.++|.++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999887554 77888888888888888888
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..++++|+++|+++|++++|.++|+.|.+ ||..+|
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~------~d~~t~ 394 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------KNLISW 394 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC------CCeeeH
Confidence 88888888888888888888888888888888888888888888888888888888888888888764 378888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHH-cCCCCCHhhHHHHHHHHHh
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIE-EGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~ 388 (577)
|+||.+|++.|+.++|+++|++|.+ ..||..+|+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++|+++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 8888888888888888888888876 578888888888888888888888888888876 4888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.|++++|.+++++| ++.||..+|++++.+|...|+++.|..+++ .+. ++.| +..+|..|+++|++.|++++
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~-~l~----~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAE-KLY----GMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHH-HHh----CCCCCCCcchHHHHHHHHhCCCHHH
Confidence 88888888888776 467888888888888888888888888888 443 2556 56788888888888888888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHH-------HHHHHhc-----chHHHHHHHHHHHH--H----HHHHhhhhhhhhHHHH
Q 008097 468 ASMLLVQMVGKGILPD-YLTWNSL-------LICLSQQ-----TTWLLLLLLNEMVS--F----VMVVHELSAKEKRCKL 528 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~-----~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~ 528 (577)
|.+++++|.++|+++. ..+|..+ +.+-..+ ....+.++..+|.. | ..+.+.....++...+
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSG 626 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHH
Confidence 8888888888887633 3445332 1111111 11122333333332 1 1222344444454444
Q ss_pred Hhh-H------hhhc-CCC---CccccccCCCeeeEE
Q 008097 529 RSL-N------HLAH-GAG---SVWLGLRIHDTTHTF 554 (577)
Q Consensus 529 ~~~-~------~~~~-~~g---~~~~~~~~~~~~~~~ 554 (577)
..| + ||-. .|| ...+|+|||++||++
T Consensus 627 ~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~ 663 (697)
T PLN03081 627 RYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKV 663 (697)
T ss_pred HhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhh
Confidence 444 2 4433 334 466899999999987
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-28 Score=272.16 Aligned_cols=542 Identities=12% Similarity=0.071 Sum_probs=381.4
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|.++..+..+...+.+.|++++|...++.+.+..+ .+...++.+...+.+. ++++|.++|+ .+.... +.+...+..
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~~~ 402 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLA-KATELD-PENAAARTQ 402 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHhcC-CCCHHHHHH
Confidence 34455666667777777777777777777765432 3556666666667666 7777777777 444332 224455666
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCCh
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 163 (577)
+...+...|++++|.+.+..+.+.... .......++..|.+.|++++|..+++++.. .+..+|+.+...|...|++
T Consensus 403 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 403 LGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCH
Confidence 666677777777777777777765422 334555667777778888888888777763 3556777888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHH
Q 008097 164 VNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEME 228 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~ 228 (577)
++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+... ...|+.++|..++.++.
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888877653 334556677777888888888888888877654 46778888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
..+. .+...+..++..|...|++++|..+++.+.+.. +.+..+|..+...|...|++++|...|+.+.... +.+.
T Consensus 561 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 635 (899)
T TIGR02917 561 ELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSA 635 (899)
T ss_pred HhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh
Confidence 6543 356677778888888888888888888887653 5567788888888888888888888888887652 2255
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..+..+...+.+.|++++|...++++.+..|+ ...+..+...+...|++++|.++++.+.+.. +++...+..+...+.
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 67788888888888888888888888877665 4567777888888889999999988888763 456777888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhH
Q 008097 388 QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 467 (577)
..|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.+++.+. . .+.+...+..+...|...|++++
T Consensus 715 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~--~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T--HPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 899999999999988874 36667777888888899999999988884444 1 23367788888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHHHHHH--------HHHHHHHHhhhhhhhhHHHHHhh--HhhhcC
Q 008097 468 ASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLLLLNE--------MVSFVMVVHELSAKEKRCKLRSL--NHLAHG 537 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 537 (577)
|.+.++++.+.. +++..+++.+...+...|+.+....... ...+..+...+...|+.++..+. ..+...
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999988652 4466788888888888877432222222 12223344445555655544443 244555
Q ss_pred CCCccccccCCCeeeEEEecchhccCcccccccccccC
Q 008097 538 AGSVWLGLRIHDTTHTFIIDRRVEIGHVFCSSSSLKDV 575 (577)
Q Consensus 538 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (577)
|+...+ ....+.-....|...++..++.+|
T Consensus 868 ~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 868 PEAAAI--------RYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCChHH--------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 553332 112233345556665555554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-28 Score=268.44 Aligned_cols=504 Identities=13% Similarity=0.056 Sum_probs=395.5
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
.|.++..+..+...+.+.|++++|.+.|+.+.+..+ .+...|..+...+... ++++|.+.|. ........ +.....
T Consensus 359 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~-~a~~~~~~-~~~~~~ 435 (899)
T TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLE-TAAQLDPE-LGRADL 435 (899)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHH-HHHhhCCc-chhhHH
Confidence 356788899999999999999999999999987543 3566777777777777 9999999998 55544322 334556
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 162 (577)
.++..+.+.|++++|.+++..+.+. .+++..++..+...|...|++++|...|+++.+ .+...+..+...+...|+
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC
Confidence 6778888999999999999999875 345778899999999999999999999998764 345567778888999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEM 227 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~ 227 (577)
+++|.+.|+++.... +.+..++..+...+.+.|+.++|...++.+... ...|++++|..+++.+
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998765 346778888889999999999999998887554 5688999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.... +.+...|..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|..+++.+.... +.+
T Consensus 594 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 668 (899)
T TIGR02917 594 ADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDN 668 (899)
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Confidence 7753 3467889999999999999999999999988753 4466778888889999999999999999888753 335
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
..++..+...+...|++++|..+++.+.+..| +...+..+...|.+.|++++|...|+++... .|+..++..++.++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 67888888899999999999999999887655 4455667778888999999999999998875 35557777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|++.+. . -++++..+..+...+...|+ +
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~-~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK---K-APDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH---h-CCCCHHHHHHHHHHHHhcCc-H
Confidence 99999999999999888753 44677788888888889999999999984443 1 13367788888888999888 7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcchHHHHH-HHH--------HHHHHHHHHhhhhhhhhHHHHHh
Q 008097 467 SASMLLVQMVGKGILPD-YLTWNSLLICLSQQTTWLLLL-LLN--------EMVSFVMVVHELSAKEKRCKLRS 530 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 530 (577)
+|.+.++++.+. .|+ ..+|..+...+...|+.+.+. ... +...+..++..+...|+.++.+.
T Consensus 821 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 821 RALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 899999888753 343 466777777788888776432 112 23344555666666666655544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-20 Score=204.63 Aligned_cols=474 Identities=13% Similarity=0.040 Sum_probs=331.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHH----------------HHHHHHHHhc-CHHHHHHHHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIF----------------NSILDVLVKE-DIDLARAFYRK 70 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~li~~~~~~-~~~~a~~~~~~ 70 (577)
|.++.++..++..+.+.|+.++|.+.+++..+..|. +...+ ..+...+... ++++|+..|+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~- 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD- 136 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH-
Confidence 557888999999999999999999999999886542 22221 2222345666 9999999998
Q ss_pred HHhhcCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCc--
Q 008097 71 KMMASGVQGDDY-TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPND-- 147 (577)
Q Consensus 71 ~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-- 147 (577)
.+.... +|+.. ............|+.++|.+.++++.+.. +.+...+..+...+...|+.++|+..|+++.+...
T Consensus 137 ~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 137 KLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 554432 23322 11111222234689999999999998874 33667788888999999999999999887642100
Q ss_pred ----ee-----------------HH----------------------------------HHHHHHHhcCChHHHHHHHHH
Q 008097 148 ----VT-----------------FS----------------------------------ILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 148 ----~~-----------------~~----------------------------------~li~~~~~~~~~~~A~~~~~~ 172 (577)
.. +. .....+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 00 00 112345677999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------------------hhcCChhHHHHH
Q 008097 173 SFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-----------------------------GRLGKVKGGCRF 223 (577)
Q Consensus 173 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~g~~~~a~~~ 223 (577)
..+.. +.+...+..+..++.+.|++++|...|+.+++. .+.|++++|...
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88754 236778888889999999999999999888763 256788889999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH--------------------------
Q 008097 224 LKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTL-------------------------- 277 (577)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------------------------- 277 (577)
|++...... .+...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 374 ~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 374 YQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999888643 256677788889999999999999999988652 2223333222
Q ss_pred ----------------HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 278 ----------------IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 278 ----------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
...+...|++++|.+.|++..+..+. +...+..+...|.+.|++++|...++++.+..|+.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 23345678888888888888876333 55567778888888999999999998887766643
Q ss_pred ee-hHHHHH--------------------------------------------HhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 342 VD-RSLKIL--------------------------------------------GFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 342 ~~-~~~l~~--------------------------------------------~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
.. +..+.. .+...|+.++|..+++. .+++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 22 222222 23344444445444441 23455
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
..+..+...|.+.|++++|++.|++..+. .| +...+..+...+...|+.++|...+++.+. ..| +...+..
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~-----~~p~~~~~~~~ 676 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA-----TANDSLNTQRR 676 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----cCCCChHHHHH
Confidence 56777888888999999999999998874 35 566788888899999999999999984333 345 4556777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcchHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGKGIL-P----DYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~~~~-p----~~~~~~~ll~~~~~~~~~~~~ 503 (577)
+..++...|++++|.++++++....-. | +..++..+...+...|+.+.+
T Consensus 677 la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 677 VALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 888888999999999999998754221 1 123455555666777776543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-19 Score=199.19 Aligned_cols=380 Identities=13% Similarity=0.061 Sum_probs=226.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCc---eeHHHH-----------
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PND---VTFSIL----------- 153 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~l----------- 153 (577)
.+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3445666666766666666643 22455666666666666777777666666553 221 112111
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh--------------hhcCChh
Q 008097 154 -ICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ--------------GRLGKVK 218 (577)
Q Consensus 154 -i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------~~~g~~~ 218 (577)
...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|.+.|+.+++. ...++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 223456666666666666666543 223445555666666666666666666666544 1122333
Q ss_pred HHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHH
Q 008097 219 GGCRFLKEMERKGCL--------PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDG 290 (577)
Q Consensus 219 ~a~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 290 (577)
+|..+++.+...... .....+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 343333322211000 001122333344444555555555555554432 11333444444555555555555
Q ss_pred HHHHHHHHhccCCCCCCcccH--------------------------------------------HHHHHHHHhcCCHHH
Q 008097 291 LKILQLMEDSKEGSKGRISPY--------------------------------------------NSVLYGLYRENQQDE 326 (577)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~li~~~~~~g~~~~ 326 (577)
...++.+....+. +...+ ..+...+...|+.++
T Consensus 515 ~~~l~~al~~~P~---~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 515 DALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHcCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 5555554443211 11111 123445566666677
Q ss_pred HHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008097 327 ALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG 406 (577)
Q Consensus 327 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 406 (577)
|..+++ ...++...+..+...|.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++...+.
T Consensus 592 A~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 592 AEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 766665 222344456677888999999999999999999863 346889999999999999999999999988764
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC---CcccHHHHHHHHHHcCChhHHHHHHHHHHH-CCCC
Q 008097 407 YLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP---GSGHYSPLIKALCEKGGFQSASMLLVQMVG-KGIL 481 (577)
Q Consensus 407 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~ 481 (577)
.|+ ..+...+..++...|++++|.+++++.+. ......| +...+..+...+...|++++|.+.+++... .|+.
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP-QAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh-hCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 454 45567788888999999999999995444 1111122 234666778899999999999999999863 3344
Q ss_pred C
Q 008097 482 P 482 (577)
Q Consensus 482 p 482 (577)
|
T Consensus 745 ~ 745 (1157)
T PRK11447 745 P 745 (1157)
T ss_pred C
Confidence 3
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=187.55 Aligned_cols=309 Identities=15% Similarity=0.105 Sum_probs=223.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC-C------ceeHHHHHHHHHhcCC
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-N------DVTFSILICAYCKEEN 162 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~ 162 (577)
.+...|++++|...|.++.+.+. .+..++..+...|.+.|++++|..+++.+... + ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 44567788888888888887642 34557777778888888888888888776642 1 1346677778888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhh
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDT 238 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~ 238 (577)
+++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+ ...+..+. ...
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-------------------~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERL-------------------EKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHH-------------------HHhcCCcchHHHHHH
Confidence 888888888887642 345667777788887777777777765443 22221111 123
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.++++....+ .....+++.++.+|
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~ 259 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHH
Confidence 4566777788889999999998887653 33456777788888888999999998888876521 11234567788888
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ---EERVREA 395 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A 395 (577)
.+.|++++|...++++.+..|+...+..+...+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++
T Consensus 260 ~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 8888888888888888887777766677788888888888888888888774 5788888877777664 5578888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 430 (577)
+.++++|.+.++.|++. ..|.++|...+-
T Consensus 338 ~~~~~~~~~~~~~~~p~------~~c~~cg~~~~~ 366 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR------YRCRNCGFTART 366 (389)
T ss_pred HHHHHHHHHHHHhCCCC------EECCCCCCCCcc
Confidence 88888888777777665 357777766543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-20 Score=185.16 Aligned_cols=301 Identities=17% Similarity=0.138 Sum_probs=212.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC--
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-- 234 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-- 234 (577)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+. ..+..+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------------------~~~~~~~~ 104 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLL-------------------SRPDLTRE 104 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHh-------------------cCCCCCHH
Confidence 344455555555555555432 1233455555555555555555555543321 111000
Q ss_pred -ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC--CcccH
Q 008097 235 -NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG--RISPY 311 (577)
Q Consensus 235 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ 311 (577)
....+..+...|.+.|++++|..+|+++.+.. +++..++..++..|.+.|++++|.+.++.+.+..+.... ....+
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 183 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 12356677778888888888888888887652 446677888888888888888888888888765221100 01134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
..+...+.+.|++++|...|+++.+..|+. ..+..+...|.+.|++++|.++|+++...+......+++.++.+|...|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 556667788888888888888888766653 3556677788889999999999999887532222467888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH---cCChhH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE---KGGFQS 467 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---~g~~~~ 467 (577)
++++|.+.++++.+. .|+...+..+...+.+.|++++|..++++.+. ..|+...+..++..+.. .|+.++
T Consensus 264 ~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-----~~P~~~~~~~l~~~~~~~~~~g~~~~ 336 (389)
T PRK11788 264 DEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR-----RHPSLRGFHRLLDYHLAEAEEGRAKE 336 (389)
T ss_pred CHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCcCHHHHHHHHHHhhhccCCccchh
Confidence 999999999999874 57777778888999999999999999985555 46888888888888775 568999
Q ss_pred HHHHHHHHHHCCCCCCHH
Q 008097 468 ASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 468 A~~~~~~m~~~~~~p~~~ 485 (577)
|..++++|.+++++|++.
T Consensus 337 a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 337 SLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999888888775
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-17 Score=174.93 Aligned_cols=277 Identities=14% Similarity=0.038 Sum_probs=191.1
Q ss_pred hhcCChhHHHHHHHHHHHc-C-CCCChhhHHHHHHHHHhcCC---hhHHHHH------------HH----------HHHH
Q 008097 212 GRLGKVKGGCRFLKEMERK-G-CLPNVDTYNILISSYCETGV---LDSALDV------------FN----------DMKI 264 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~-~-~~p~~~~~~~li~~~~~~g~---~~~A~~~------------~~----------~m~~ 264 (577)
...|+.++|.++|...... + -.++.....-++..|.+.+. ..++..+ .. ....
T Consensus 387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
T PRK09782 387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR 466 (987)
T ss_pred HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence 4667777787777776652 1 11233344466777776655 3333222 11 1111
Q ss_pred C-CC-Cc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 265 D-GI-SW--NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 265 ~-g~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
. +. ++ +...|..+..++.. ++.++|...+....... |+......+...+.+.|++++|...|+++....|.
T Consensus 467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~ 541 (987)
T PRK09782 467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS 541 (987)
T ss_pred hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 0 11 33 55666667766665 78888888887777652 23222333344456889999999999988777666
Q ss_pred ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008097 341 AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 420 (577)
...+..+...+.+.|+.++|...|++..+.. +++...+..+.....+.|++++|+..+++..+ +.|+...+..+..+
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~ 618 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATI 618 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 6666677778888999999999999988753 22333333333444456999999999999987 45787788888889
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
+.+.|+.++|...+++.+. ..| +...+..+..++...|++++|.+.+++..+ ..|+ ...|..+-.++...|
T Consensus 619 l~~lG~~deA~~~l~~AL~-----l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALE-----LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999996555 567 677788888899999999999999999885 4554 577888888888888
Q ss_pred hHHHH
Q 008097 499 TWLLL 503 (577)
Q Consensus 499 ~~~~~ 503 (577)
+.+.+
T Consensus 692 d~~eA 696 (987)
T PRK09782 692 DMAAT 696 (987)
T ss_pred CHHHH
Confidence 87643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-19 Score=167.75 Aligned_cols=360 Identities=19% Similarity=0.201 Sum_probs=266.4
Q ss_pred chHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-HHHHH
Q 008097 117 VIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITK-VLELL 192 (577)
Q Consensus 117 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~ 192 (577)
.+|+.+.+.+-..|++.+|+.+++.+.+ ..+..|.-+..++...|+.+.|.+.|.+.++. .|+.....+ +...+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH
Confidence 3445555555555555555555555443 12344555555555555555555555544432 233222211 22223
Q ss_pred HhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHH
Q 008097 193 CSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPN-VDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 256 (577)
-..|++++|...+-++++. -..|++..|+..|++.... .|+ ...|-.|-..|...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHH
Confidence 3345555555555444443 3345555555556666554 444 467888999999999999999
Q ss_pred HHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 257 DVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 257 ~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
..|.+.... .|+ ...+..+...|...|.+|.|+..+++..+..+. =...|+.|..++-..|+..+|...+.+..
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN---FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC---chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 999988765 454 567778888899999999999999999987544 34679999999999999999999999999
Q ss_pred hcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 008097 336 KLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS- 412 (577)
Q Consensus 336 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 412 (577)
...|+. ...+.+...|...|.+++|.++|....+ +.|. ....|.|...|-++|++++|+..+++.++ +.|+..
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 987764 5678899999999999999999999988 4555 56789999999999999999999999997 789754
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSL 490 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l 490 (577)
.++.+...|...|+++.|.+.+.+.+. +.| -.+..+.|..+|-.+|+..+|++-+++.. .++||. ..+-.|
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~-----~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNl 496 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ-----INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNL 496 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh-----cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHH
Confidence 689999999999999999999997766 788 46788999999999999999999999998 578885 667778
Q ss_pred HHHHHh
Q 008097 491 LICLSQ 496 (577)
Q Consensus 491 l~~~~~ 496 (577)
+++...
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 777543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-19 Score=167.63 Aligned_cols=430 Identities=15% Similarity=0.124 Sum_probs=272.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
...|..-..+.|++.+|++.-...-+.++... ...-.+-..+.+. +++.....-. ...+. .+.-..+|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~-~~llll~ai~~q~~r~d~s~a~~~-~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT-ERLLLLSAIFFQGSRLDKSSAGSL-LAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcc-cceeeehhhhhcccchhhhhhhhh-hhhhc-cchHHHHHHHHHHHHH
Confidence 45566666788888888876665544332111 1111111222222 2222221111 00110 1112344555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHH-HHHHHHhcCChHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSI-LICAYCKEENLVNALVL 169 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~~~~~~A~~~ 169 (577)
..|+++.|+.+++.+++... .....|..+..++...|+.+.|...|....+ |+.....+ +-...-..|+.++|...
T Consensus 128 erg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 55555555555555554321 1334445555555555555555555544443 22121111 11112223444444444
Q ss_pred HHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCC
Q 008097 170 LEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCL 233 (577)
Q Consensus 170 ~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~ 233 (577)
|.+.... .|. .+.|+.|...+-..|+...|.+.|+++.+. ...+.++.|...+...... .
T Consensus 207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 4443332 111 233444444444444444444444444433 2233334444444444433 2
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 234 P-NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 234 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
| ..+.+..|...|...|..|.|+..|++.++. .|+ ...|+.|..++-..|++.+|.+.+.......+. ...+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~---hadam 357 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN---HADAM 357 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc---cHHHH
Confidence 3 4567888888899999999999999999876 454 578999999999999999999999999876322 55678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhc
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQE 389 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 389 (577)
+.|...|...|.+++|..+|....+..|.. ...+.+...|-+.|++++|+..+++.++ ++|+ ..+|+.|...|-..
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 899999999999999999999999988875 5678899999999999999999999998 6777 56899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCCh
Q 008097 390 ERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGF 465 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~ 465 (577)
|+.+.|++.+.+.+. +.|.. ..++.|.+.|..+|++.+|+.-+++.++ ++|| +..|..++.++.--.+|
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk-----lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK-----LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc-----cCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999997 56764 4689999999999999999999997777 7885 55666666665444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-17 Score=170.01 Aligned_cols=428 Identities=11% Similarity=-0.022 Sum_probs=278.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
+......|.+.|++++|+..|+..++. .|+...|..+..+|.+. ++++|++.+. ...+.. +.+...|..+..++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~-~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTT-AALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHH-HHHHcC-CCCHHHHHHHHHHHH
Confidence 445666777778888888888877763 45556666666677776 7778877777 443322 123556666777777
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 172 (577)
..|++++|..-|..+...+...+.. ...++.-+........+...++.- .++..++..+.. |...........-+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 7788877777776655442111111 111111111111122233333221 123333333322 2221111111111111
Q ss_pred HHhCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhc
Q 008097 173 SFSFGFVPDV-VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG-CLP-NVDTYNILISSYCET 249 (577)
Q Consensus 173 m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~ 249 (577)
... ..++. ..+..+.. . .......+.+++|...|+.....+ ..| +...|+.+...+...
T Consensus 283 ~~~--~~~~~~~~~~~l~~------------~----~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 283 SNE--LDEETGNGQLQLGL------------K----SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred ccc--cccccccchHHHHH------------H----HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 100 01110 00000000 0 000012345566666677776653 223 456788888889999
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (577)
|++++|+..|++..... +-+..+|..+...+...|++++|...|+.+.+.++. +...|..+...+...|++++|..
T Consensus 345 g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 345 GKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE---DPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998762 234668888889999999999999999999876332 56788999999999999999999
Q ss_pred HHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 330 YLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 330 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.|++..+..|+. ..+..+...+.+.|++++|...|++.... .+.+...|+.+...+...|++++|++.|++..+. .
T Consensus 421 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~ 497 (615)
T TIGR00990 421 DYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--E 497 (615)
T ss_pred HHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C
Confidence 999999988864 45666778889999999999999999875 3345788999999999999999999999998864 2
Q ss_pred CCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 409 PIA-------S-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 409 p~~-------~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|+. . .++..+..+...|++++|..++++.+. +.| +...+..+..++.+.|++++|.+.+++..+.
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-----l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-----IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 321 1 112222233447999999999996565 456 4457889999999999999999999998753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-15 Score=162.95 Aligned_cols=245 Identities=11% Similarity=-0.029 Sum_probs=174.0
Q ss_pred HHhcCChhHHHHHHHHHHHC-C-CCcCHHHHHHHHHHHHcCCChH---HH----------------------HHHHHHHH
Q 008097 246 YCETGVLDSALDVFNDMKID-G-ISWNFVTYDTLIRGLCSGGRID---DG----------------------LKILQLME 298 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~-g-~~~~~~~~~~ll~~~~~~g~~~---~a----------------------~~~~~~~~ 298 (577)
..+.|+.++|.++|+..... + ..++.....-++..|.+.+.+. ++ ........
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 34567777788877777652 1 2233333446666666665522 22 22222222
Q ss_pred hccCCCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 299 DSKEGSKG--RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 299 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
..-+..++ +...|..+..++.. +++++|...+.+.....|+......+...+...|++++|...|+++... +|+.
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 22112233 45567777777776 8999999999998888887544333444556899999999999998763 4555
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
..+..+...+.+.|+.++|...+++..+.. |+. ..+..+...+.+.|++++|...+++.+. +.|+...|..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-----l~P~~~a~~~L 615 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN-----IAPSANAYVAR 615 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hCCCHHHHHHH
Confidence 667778888999999999999999999754 543 3344444555677999999999997666 67888899999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
..++.+.|++++|...+++..+ ..|+. ..+..+-.++...|+.+.
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999985 56664 566777778888887654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-16 Score=167.21 Aligned_cols=325 Identities=11% Similarity=0.050 Sum_probs=181.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 162 (577)
.++..+.+.|++++|..+++........ +...+..++......|++++|...|+++.+ | +...|..+...+...|+
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3455555666666666666666655332 233334444455556666666666666653 2 33445555566666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNIL 242 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 242 (577)
+++|+..|+++.... +.+...+..+...+...|++++|...++. +...... +...+..+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~-------------------~~~~~P~-~~~a~~~~ 184 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLART-------------------QAQEVPP-RGDMIATC 184 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHH-------------------HHHhCCC-CHHHHHHH
Confidence 666666666665532 22344555556666666666666555332 2221111 12222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
..+...|++++|...++.+.+....++...+..+...+.+.|++++|...++......+ .+...+..+...+.+.|
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p---~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL---DGAALRRSLGLAYYQSG 260 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC
Confidence 23556666666666666665543223333344445556666666666666666665422 24455566666666666
Q ss_pred CHHH----HHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 323 QQDE----ALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 323 ~~~~----A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
++++ |...|+++.+..|+. ..+..+...+.+.|++++|...+++..... +.+...+..+..+|.+.|++++|++
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6664 566666666655543 345555666666677777777777666642 2234455666666777777777777
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 398 LMKEMTGHGYLPIAST-FNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.|+++... .|+... +..+..++...|+.++|...|++.+.
T Consensus 340 ~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 340 EFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77766653 344332 33334556667777777777764444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-16 Score=165.26 Aligned_cols=325 Identities=14% Similarity=0.068 Sum_probs=132.8
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNR 96 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 96 (577)
++..+.+.|++++|..+++......+.+....++..+..+...++++|+..|+ .+.... +.+...+..+...+.+.|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~-~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVN-KLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHH-HHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 34444444555555555555544433333333333322222125555555554 332221 1123334444444445555
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCce-eHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 97 VGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDV-TFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 97 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+.. |+.. .+.. +..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHHH
Confidence 555555555554431 12333444444455555555555554444321 2111 1111 12244445555555555544
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChh
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLD 253 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 253 (577)
......++...+..+..++.+.|++++|...++. ..... +.+...+..+...|...|+++
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~-------------------al~~~-p~~~~~~~~Lg~~l~~~G~~~ 263 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGES-------------------ALARG-LDGAALRRSLGLAYYQSGRSR 263 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH-------------------HHhcC-CCCHHHHHHHHHHHHHcCCch
Confidence 4332222222222233334444444444433222 22111 112334444444444445444
Q ss_pred H----HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 008097 254 S----ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 254 ~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (577)
+ |...|++..+.. +.+...+..+...+.+.|++++|...++......+. +...+..+...+.+.|++++|..
T Consensus 264 eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~---~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 264 EAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD---LPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred hhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3 444444444331 223334444444444455555555555444443111 22334444444444455555555
Q ss_pred HHHHHhhcCCCceehH-HHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 330 YLKQMEKLFPRAVDRS-LKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 330 ~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
.++++....|+...+. .+..++...|+.++|...|++..+
T Consensus 340 ~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 340 EFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5444444444332221 123334444444555444444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-15 Score=156.12 Aligned_cols=435 Identities=11% Similarity=0.057 Sum_probs=253.5
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC---Hhh
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD---DYT 83 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~---~~~ 83 (577)
|..+.+...-+-...+.|+++.|+..|++..+..+.-....+ .++..+... +.++|+..++ ... .|+ ...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~e-ka~----~p~n~~~~~ 104 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYE-RYQ----SSMNISSRG 104 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHH-Hhc----cCCCCCHHH
Confidence 334445455555667999999999999999885443222334 777777777 9999999999 443 333 223
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHh--cC
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCK--EE 161 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~ 161 (577)
...+...+...|++++|.++++++.+.... +...+..++..|...++.++|++.++++...+......+..+|.. .+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcc
Confidence 333355777889999999999999997543 567778889999999999999999999987444333334444444 56
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------h---------hcC
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-----------------G---------RLG 215 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------~---------~~g 215 (577)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++...-... . ...
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 6666999999999874 335677788889999999988888776543322 0 111
Q ss_pred C---hhHHHHHHHHHHHc-CCCCCh-hh----HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 216 K---VKGGCRFLKEMERK-GCLPNV-DT----YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 216 ~---~~~a~~~~~~~~~~-~~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
+ .+.|+.-++.+... +..|.. .. .--.+-++...|++.++++.|+.+...|.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 1 12233333333321 111211 11 112233444555555555555555555544333455555555555555
Q ss_pred hHHHHHHHHHHHhccCC---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHH
Q 008097 287 IDDGLKILQLMEDSKEG---SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKR 362 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~ 362 (577)
+++|..++..+....+. .+++......|..++...+++++|..+++.+.+..|..+. +.. .
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~----------~----- 407 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL----------P----- 407 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC----------C-----
Confidence 55555555555443211 0111222344555555555555555555555543331000 000 0
Q ss_pred HHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 363 CFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
.....||-. .+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++ ...
T Consensus 408 ------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k-~a~-- 477 (822)
T PRK14574 408 ------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELK-AVE-- 477 (822)
T ss_pred ------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHh--
Confidence 000112211 22334455566666666666666665532 2255566666666666666666666665 333
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+.| +.......+..+...|++++|..+.+...+
T Consensus 478 --~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 --SLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred --hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 1345 445555666666666666666666666653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-15 Score=162.36 Aligned_cols=431 Identities=10% Similarity=0.010 Sum_probs=269.4
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
-+.++....-.+......|+.++|++++....... +.+...+..+...+... ++++|..+|+ ...... +.+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~-~al~~~-P~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQ-KALSLE-PQNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHhC-CCCHHHHH
Confidence 46677788888899999999999999999987532 23555677787788777 9999999999 444321 23455667
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCC
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEEN 162 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~ 162 (577)
.+...+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 77788889999999999999998873 33555 88888899999999999999999875 3 34456667778888899
Q ss_pred hHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCCh---hHHHHHHHHHHHc-CC
Q 008097 163 LVNALVLLEKSFSFGFVPDVV------TITKVLELLCSVGRVMDAVEILEESGEQGRLGKV---KGGCRFLKEMERK-GC 232 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~---~~a~~~~~~~~~~-~~ 232 (577)
.++|+..+++... .|+.. ....++......+. ...+++ ++|+..++.+... ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~--------------~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR--------------SEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc--------------ChhHHHHHHHHHHHHHHHHHhhccc
Confidence 9999998886653 33310 01111111111110 011111 3445555555543 11
Q ss_pred CCChh-hH----HHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 233 LPNVD-TY----NILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 233 ~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
.|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+.+....+...+
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 22221 11 11133445678888888888888876532 322 2222466788888888888888887765322111
Q ss_pred -CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHH
Q 008097 307 -RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCL 382 (577)
Q Consensus 307 -~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 382 (577)
.......+..++.+.|++++|...++.+....|........ . ...|+ ...+..+
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~-------------------~---~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS-------------------P---TSIPNDDWLQGQSLL 365 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC-------------------C---CCCCCchHHHHHHHH
Confidence 12335556667788888888888888887765532210000 0 00123 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++.+. +.| +...+..++..+.+
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~-----l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV-----LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCChHHHHHHHHHHHH
Confidence 566666677777777777766531 22444566666666677777777777764443 445 35555666666667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008097 462 KGGFQSASMLLVQMVGKGILPDYLTWNSL 490 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 490 (577)
.|++++|..+++++.+ ..|+....-.|
T Consensus 440 ~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 440 LQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred hCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 7777777777777764 34554433333
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-16 Score=160.67 Aligned_cols=400 Identities=14% Similarity=0.028 Sum_probs=267.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhc
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKE 160 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 160 (577)
+......+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|+..+++..+ | +...|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334555667788888888888887764 45667777788888888888888888887764 2 344677777788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhh--hcCChhHHHHHHHHHHH--------c
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG--RLGKVKGGCRFLKEMER--------K 230 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~g~~~~a~~~~~~~~~--------~ 230 (577)
|++++|+..|......+...+. ....++..+.. ..+........+.. ........-.++..... .
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 8888888777665443211111 11111111111 11111111111110 00000000001110000 0
Q ss_pred --CCCCC-hhhHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 231 --GCLPN-VDTYNILISSY---CETGVLDSALDVFNDMKIDG-ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 231 --~~~p~-~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
...|+ ...+..+...+ ...+++++|...|+.....+ ..| +...+..+...+...|++++|...++.....++
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 00010 00111111111 22468999999999998764 223 456678888888999999999999999987633
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
. ....|..+...+...|++++|...|+++.+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..
T Consensus 363 ~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~ 438 (615)
T TIGR00990 363 R---VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQ 438 (615)
T ss_pred C---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHH
Confidence 2 4557888889999999999999999999887775 4667778888999999999999999999863 335777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCc-cc-------H
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGS-GH-------Y 452 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~-~~-------~ 452 (577)
+...+.+.|++++|+..|++.++. .| +...++.+...+...|++++|...|++.+. +.|+. .. +
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE-----LEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCccccccccHHHHH
Confidence 999999999999999999999874 35 467888899999999999999999996665 33421 11 1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~ 503 (577)
+.....+...|++++|.+++++..+ +.|+. ..+..+...+...|+.+.+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHH
Confidence 2222334457999999999999875 45654 5688888889988887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-16 Score=163.53 Aligned_cols=396 Identities=13% Similarity=0.042 Sum_probs=248.7
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 008097 49 FNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC 127 (577)
Q Consensus 49 ~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 127 (577)
..-.+...... +.++|+++|. ...... +.+...+..+..++.+.|++++|.+++++.++.. +.+...+..+...+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~-~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYN-RYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33444445555 9999999998 554322 3455568888899999999999999999998863 335667788889999
Q ss_pred hcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 008097 128 KNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEI 204 (577)
Q Consensus 128 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 204 (577)
..|++++|...+++..+ | +.. |..+...+...|+.++|+..++++.+... .+...+..+..++...+..+.|.+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999874 3 445 88888899999999999999999988643 2455556677788888888888877
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH-----HhcCCh---hHHHHHHHHHHHC-CCCcCHH-HH
Q 008097 205 LEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSY-----CETGVL---DSALDVFNDMKID-GISWNFV-TY 274 (577)
Q Consensus 205 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~ 274 (577)
++.+.... ....... ......++..+ ...+++ ++|+..++.+.+. ...|+.. .+
T Consensus 173 l~~~~~~p---~~~~~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 173 IDDANLTP---AEKRDLE-------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHhCCCCH---HHHHHHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 64432100 0000000 00011111111 112223 5666666666643 1122211 11
Q ss_pred H----HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHH
Q 008097 275 D----TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILG 350 (577)
Q Consensus 275 ~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 350 (577)
. ..+.++...|++++|+..|+.+.+..+.. |+. ....+...|...|++++|+..|+++.+..|....
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~-P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~------- 307 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQII-PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIAD------- 307 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC-CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC-------
Confidence 1 11223345567777777777666541111 111 1111344555555555555555554443222100
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCCH---HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-----------YLPIA---STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~ 416 (577)
.....+..+..++...|++++|.++++++.+.. -.|+. ..+..
T Consensus 308 -----------------------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 308 -----------------------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred -----------------------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 011233444445556666666666666655421 12442 24556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICL 494 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 494 (577)
+...+...|+.++|+..+++... ..| +...+..+..++...|++++|++.+++..+ +.|+ ...+..+....
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~-----~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAY-----NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHH
Confidence 77788899999999999995444 356 778899999999999999999999999984 5677 45666666677
Q ss_pred HhcchHHHHH
Q 008097 495 SQQTTWLLLL 504 (577)
Q Consensus 495 ~~~~~~~~~~ 504 (577)
...++++.++
T Consensus 438 l~~~~~~~A~ 447 (765)
T PRK10049 438 LDLQEWRQMD 447 (765)
T ss_pred HHhCCHHHHH
Confidence 7778776544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-15 Score=147.61 Aligned_cols=458 Identities=12% Similarity=0.056 Sum_probs=288.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCH--h
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTP--SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDD--Y 82 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~--~ 82 (577)
+-+|.+.+.|.+.|.-.|++..+..+...+....... -...|-.+-++|-.. ++++|...|- .-. +..+|. .
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~-~s~--k~~~d~~~l 343 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM-ESL--KADNDNFVL 343 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHH--ccCCCCccc
Confidence 3456666666666666666666666666665422111 112244444555444 6666666665 222 223333 2
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC----CHhHHHHHHHhccCC---CceeHHHHHH
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNG----KVGRARSLMSDMEEP---NDVTFSILIC 155 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~ 155 (577)
.+.-+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..++.+..++ |...|-.+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 33345556666666666666666666642 234445555555555554 345555555555443 3334444444
Q ss_pred HHHhcCChHHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--
Q 008097 156 AYCKEENLVNALVLLEKS----FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER-- 229 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m----~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~-- 229 (577)
.+... +...++..|... ...+-.+.+...+.+.......|.++.|...|..+... ......
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~------------~~~~~n~d 489 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK------------LLEVANKD 489 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh------------hhhhcCcc
Confidence 44333 333335444433 23344455666666666666677777666665554332 110000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
.|-.+++.+--.+...+-..++++.|.+.|..+.+. .|+-+. |.-+..+--..+...+|...+..+... ...++
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np 564 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNP 564 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCc
Confidence 011122222233445556678999999999999876 455433 333332333457888999999988875 33367
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCceehHHHHHHhh------------hcCCHHHHHHHHHHHHHcCCC
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKL---FPRAVDRSLKILGFC------------VDGNVEDAKRCFDQMIEEGGV 373 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~ 373 (577)
..++.+...+.+...+..|.+-|..+.+. .+|..+.-.|...|. ..+..++|+++|.++++. .+
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dp 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DP 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 77888888999999999999988777653 244444444444333 225678899999999986 44
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
.|...-|-+.-.++..|++.+|..+|.+..+... -+..+|..+...|..+|++..|+++|+..++ .+.-.-++.+..
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLH 720 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHH
Confidence 5888888999999999999999999999997653 2344788899999999999999999998887 555555889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLL 491 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 491 (577)
+|..++.++|.+.+|.+.+.........-..+.+|..+
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 99999999999999999988887532222234455443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-13 Score=137.84 Aligned_cols=431 Identities=14% Similarity=0.054 Sum_probs=262.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CcchHHHHHHHHHhcCCHhHHHHH
Q 008097 61 IDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKP--NSVIYNTLIHSLCKNGKVGRARSL 138 (577)
Q Consensus 61 ~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~ 138 (577)
+..+..++.......+ -|+...+.|.+-+.-.|++..++.+...++..-... -...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 4445555542222222 244555666666666777777777766666543111 112345566667777777777777
Q ss_pred HHhccC--CCc--eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHHHH
Q 008097 139 MSDMEE--PND--VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG----RVMDAVEILEESGE 210 (577)
Q Consensus 139 ~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~ 210 (577)
|-+..+ +|. ..+--+...|.+.|+.+.+...|+...+.. +-+..|...+...|...+ ..+.|..++....+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 666554 222 233445566777777777777777766542 223455555555555543 34455555444443
Q ss_pred h--------------hhcCChhHHHHHHHHH----HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCc
Q 008097 211 Q--------------GRLGKVKGGCRFLKEM----ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID---GISW 269 (577)
Q Consensus 211 ~--------------~~~g~~~~a~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~ 269 (577)
. ...++...++..|... ...+-.+.....|.+...+...|.+++|...|...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 3 2233333334333332 23344456666777777777777777777777776543 1122
Q ss_pred CH------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCce
Q 008097 270 NF------VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAV 342 (577)
Q Consensus 270 ~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 342 (577)
|. .+--.+...+-..++.+.|.+.|..+....|+ -+..|-.++.+....+...+|...+..+.+.. .++.
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 22 12223444455556777777777777765332 22233333323333456677777777776643 3445
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCC
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQ------------EERVREASELMKEMTGHGYLP 409 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p 409 (577)
.++.+...|.+...+..|..-|+.+.+. ...+|+.+.-+|...|.+ .+..++|+++|.+.++.. +-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence 5566666777888888888877777665 223566666666665543 245788999999988743 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGI-LPDYLTWN 488 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~ 488 (577)
|...-+.+.-.++..|++.+|..+|. ..+ +. ..-...+|..+.++|...|++-.|.++|+...+.-. +-+..+..
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFs-qVr--Ea-~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFS-QVR--EA-TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHH-HHH--HH-HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 77777888888899999999999999 555 21 223567888999999999999999999998776533 34567788
Q ss_pred HHHHHHHhcchHHH
Q 008097 489 SLLICLSQQTTWLL 502 (577)
Q Consensus 489 ~ll~~~~~~~~~~~ 502 (577)
.|-.++...|.+..
T Consensus 721 ~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQE 734 (1018)
T ss_pred HHHHHHHHhhhHHH
Confidence 88888887777643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-13 Score=122.39 Aligned_cols=306 Identities=17% Similarity=0.231 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--hcCCHhHH-HHHHHHHHhCC-----------
Q 008097 46 LKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLC--LTNRVGDG-FKLLHVMKSRG----------- 111 (577)
Q Consensus 46 ~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g----------- 111 (577)
+++=|.|+...+....+++.-+|+ .|...|+..+...-..|++..+ ...++--+ ++-|-.|.+.|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 344555666555556666666666 6666666555544444443322 22222111 11222222222
Q ss_pred --------CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008097 112 --------VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFV 179 (577)
Q Consensus 112 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 179 (577)
.+.+..++..+|.+.++-...++|.+++++-.+ -+..+||.+|.+-.- ....++..+|....++
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 123555666777777777777777777766553 344556666543221 1225566666666667
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH-HHHH
Q 008097 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS-ALDV 258 (577)
Q Consensus 180 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~ 258 (577)
||..|+|+++++..+.|+++.|+.. |.+++.+|.+-|+.|...+|..+|..+++.+++.+ |..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~a---------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKA---------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHH---------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 7777777777777777776666654 34446666677777777777777776666666543 3333
Q ss_pred HHHHHHC--C--C----CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCCCc---ccHHHHHHHHHhcCCHH
Q 008097 259 FNDMKID--G--I----SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKGRI---SPYNSVLYGLYRENQQD 325 (577)
Q Consensus 259 ~~~m~~~--g--~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~---~~~~~li~~~~~~g~~~ 325 (577)
+.++... | + +.|..-|...++.|.+..+.+.|.++...+...+. .+.|+. .-|..+....++....+
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321 1 1 12344455666666666666666666665543210 011111 12344555555666666
Q ss_pred HHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 326 EALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 326 ~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
.-...++.|.- ..|+..+...++.+..-.+.++-.-+++..+...|
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 66666666543 34555555555666556666665556655555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-13 Score=126.26 Aligned_cols=475 Identities=15% Similarity=0.103 Sum_probs=316.1
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHh----
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNS-ILDVLVKE-DIDLARAFYRKKMMASGVQGDDY---- 82 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~---- 82 (577)
.+-.++..|.+-|.......+|+..++-+.+...-|+.-.... +-..+.+. .+..|++.|+ .....-+..+-.
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyr-maldqvpsink~~rik 277 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYR-MALDQVPSINKDMRIK 277 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHH-HHHhhccccchhhHHH
Confidence 4455677788888888899999999999877666666543332 22445566 8999999998 333322222222
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----------------CC
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----------------PN 146 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~ 146 (577)
..+.+-..+.+.|.++.|...|+...+. .|+..+--.|+-.+.--|+-++..+.|.+|.. |+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 2333344567899999999999998875 47776666666677778999999999999862 22
Q ss_pred ceeHHHHH-----HHHHhcC--ChHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHHHH-HHHHHHhhhcCCh
Q 008097 147 DVTFSILI-----CAYCKEE--NLVNALVLLEKSFSFGFVPDVV-TITKVLELLCSVGRVMDAVEI-LEESGEQGRLGKV 217 (577)
Q Consensus 147 ~~~~~~li-----~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~~~g~~ 217 (577)
....|.-| .-+-+.+ +.++++-.--++..--+.||.. -+.--+..+-.....+.|.++ ...+....+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222222 2222221 2233333333333322334321 122222222223333333332 1223333788999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH
Q 008097 218 KGGCRFLKEMERKGCLPNVDTYNILISSYCE--TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQ 295 (577)
Q Consensus 218 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 295 (577)
+.|.++++-.....-+.-...-|.|-..+.- -.++.+|.+.-+...... +-|....+.-.......|++++|.+.++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999998888776322222222333222222 335677777766665332 2233333333333445799999999999
Q ss_pred HHHhccCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 296 LMEDSKEGSKGRISPYNSVL---YGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
+.... |...-.+|. -.+-..|++++|+++|-++..+. .+......+...|-...+...|++++.+....
T Consensus 515 eal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 515 EALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 99876 443333333 34677899999999999988753 34455666777888889999999999888775
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCccc
Q 008097 372 GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGH 451 (577)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~ 451 (577)
++.|+....-+...|-+.|+-..|.+.+-+--+. ++.|..|...|..-|....-+++++.+|++... +.|+..-
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-----iqp~~~k 661 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-----IQPNQSK 661 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----cCccHHH
Confidence 6678899999999999999999999887665442 455788888888888889999999999996544 8999999
Q ss_pred HHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHH
Q 008097 452 YSPLIKAL-CEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 452 ~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 501 (577)
|..||..| .|.|++++|.++++....+ +..|.....-|+.-|..-|-.+
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99988665 5689999999999999865 7788888898988887666443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-12 Score=137.33 Aligned_cols=421 Identities=12% Similarity=0.028 Sum_probs=285.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH--
Q 008097 47 KIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDD--YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL-- 122 (577)
Q Consensus 47 ~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-- 122 (577)
..|...|..+-+.++..|+..|. ...+. .|+. ..+ .++..+...|+.++|+..+++.... -+...+..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~-qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llal 108 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQ-EESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASA 108 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-HHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHH
Confidence 44666666555558999999998 44443 3443 233 7788888889999999999998721 123333333
Q ss_pred HHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 008097 123 IHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVM 199 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 199 (577)
...|...|++++|.++|+++.+ | |...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 5678888999999999999885 3 3456667778889999999999999998765 455555533333333344443
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-----
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY----- 274 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----- 274 (577)
+|.+. ++++.+..+ -+...+..++.+..+.|-...|.++..+-... +.+...-+
T Consensus 187 ~AL~~-------------------~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~ 245 (822)
T PRK14574 187 DALQA-------------------SSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDA 245 (822)
T ss_pred HHHHH-------------------HHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHH
Confidence 45554 555555532 25666777888888888888888877764422 12221111
Q ss_pred -HHHHHHH-----HcCCC---hHHHHHHHHHHHhccCCCCCCcccH----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 275 -DTLIRGL-----CSGGR---IDDGLKILQLMEDSKEGSKGRISPY----NSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 275 -~~ll~~~-----~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
...+..- ....+ .+.|..-++.+...-+..++....| --.+-++...++..++++.++.+.......
T Consensus 246 ~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 246 AAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 1111100 01223 3455555566555322223222222 234567888999999999999998654332
Q ss_pred --eehHHHHHHhhhcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------
Q 008097 342 --VDRSLKILGFCVDGNVEDAKRCFDQMIEEG-----GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-------- 406 (577)
Q Consensus 342 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------- 406 (577)
.....+.++|...+.+++|..+|.++.... .+++......|.-+|...+++++|..+++++.+..
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 345677889999999999999999997652 12344446789999999999999999999998721
Q ss_pred -----CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 407 -----YLPIAST-FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 407 -----~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
-.||-.. +..++..+...|+..+|++.+++.+. ..| |......+.+++...|++.+|.+.++... .
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-----~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~--~ 478 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-----TAPANQNLRIALASIYLARDLPRKAEQELKAVE--S 478 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--h
Confidence 1133333 44456678899999999999994444 567 99999999999999999999999998877 3
Q ss_pred CCCCH-HHHHHHHHHHHhcchHHHHH
Q 008097 480 ILPDY-LTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 480 ~~p~~-~~~~~ll~~~~~~~~~~~~~ 504 (577)
+.|+. .+......+....+++..++
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 57774 45566666777777776543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-13 Score=125.19 Aligned_cols=381 Identities=17% Similarity=0.132 Sum_probs=270.7
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCCHhHH-HH--------------------
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC--KNGKVGRA-RS-------------------- 137 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A-~~-------------------- 137 (577)
+.+=|.|++.. ..|.+..+.-+|+.|...|.+.+..+--.|+..-+ ...++--| .+
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 34566666654 56788899999999999998888777766665432 22222111 12
Q ss_pred ---HHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhc
Q 008097 138 ---LMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRL 214 (577)
Q Consensus 138 ---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 214 (577)
++-+...+...++..||.+.|+-...+.|.++|++......+.+..+||.+|.+-+-..
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------------------ 256 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------------------ 256 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------------------
Confidence 33333335667899999999999999999999999988888899999999987643221
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH-
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS----ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD- 289 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~- 289 (577)
..++..+|....+.||..|+|+++++..+.|+++. |++++.+|.+.|+.|...+|..+|..+.+-++..+
T Consensus 257 -----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 257 -----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred -----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 23457889999999999999999999999998876 46788889999999999999999999998887754
Q ss_pred HHHHHHHHHhccC--CCCC----CcccHHHHHHHHHhcCCHHHHHHHHHHHhh------cCCC---ceehHHHHHHhhhc
Q 008097 290 GLKILQLMEDSKE--GSKG----RISPYNSVLYGLYRENQQDEALEYLKQMEK------LFPR---AVDRSLKILGFCVD 354 (577)
Q Consensus 290 a~~~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~p~---~~~~~~l~~~~~~~ 354 (577)
+..++.++...-. ..+| |...+...+..|.+..+.+-|.++..-... ..|+ .+-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 5555555554211 2222 333466777888888888888877665543 2333 23356677788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--------
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN-------- 426 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-------- 426 (577)
..++.-...|+.|.-.-.-|+..+...++++....|+++-.-+++..++..|..-+...-.-++..+++...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999999987766788888889999999999999999999988887754444444444444443331
Q ss_pred ------------HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC-CCHHHHHH
Q 008097 427 ------------VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL-PDYLTWNS 489 (577)
Q Consensus 427 ------------~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ 489 (577)
+.++.+.-.+.|+ . ..-.....++..-.+.|.|+.++|.+++.-+.+.+-+ |-....++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r--~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQR--A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH--h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 1111111111232 2 2234556789999999999999999999999755433 43344443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-11 Score=116.96 Aligned_cols=454 Identities=12% Similarity=0.011 Sum_probs=308.5
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGF 101 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 101 (577)
...+.++|+-++.+..++- +-+...|. +|++. .|+.|..++. ..++ .++.+...|.+....--..|+.+...
T Consensus 388 elE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLN-kaRe-~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLN-KARE-IIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHH-HHHh-hCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3445555666666665542 22333333 33344 5566666665 3322 34455666665555555666666666
Q ss_pred HHHHH----HHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC------CCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 102 KLLHV----MKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE------PNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 102 ~~~~~----~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
++..+ +...|+..+..-|-.=...+-+.|..-.+..+...... .--.||+.-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 65543 33456666666665555555555665555555554432 123356666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 172 KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
..++.- +-+...|......--..|..+.-..++..+... -..|++..|+.++.+..+.... +.
T Consensus 541 ~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 541 HALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 655432 223445555555545556666666665555544 3456777777777777765443 67
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..|-+.+..-..+.+++.|..+|.+.... .|+...|.--+..---.++.++|.++++...+. ++.-.-.|-.+..
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhH
Confidence 78888889889999999999999988764 567777766665555678999999999888875 2223346778888
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+-+.++.+.|.+.+..-.+.-|+... |..+...--+.|.+-.|..++++..-++ +.|...|-..|..-.+.|..+.|
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 899999999999999888887776554 5556666668889999999999988764 45788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
..++.+..+. .+-+...|..-|....+.++-......+++ +.-|+.+.-.+...+....+++.|.+.|.+.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk--------ce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK--------CEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh--------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888864 444666788888777777776655555552 4457777888888888899999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcchHHH
Q 008097 476 VGKGILPDY-LTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 476 ~~~~~~p~~-~~~~~ll~~~~~~~~~~~ 502 (577)
.+ +.||. .+|.-+..-..++|..+-
T Consensus 844 vk--~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 844 VK--KDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred Hc--cCCccchHHHHHHHHHHHhCCHHH
Confidence 84 45664 788888888888987653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-11 Score=112.55 Aligned_cols=435 Identities=12% Similarity=0.115 Sum_probs=312.1
Q ss_pred HhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 21 LGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
=-.++++..|+.+|+..+..+ ..+...|-..+.+=.++ ....|+.+|+ .....-+..|. .|.-.+-.--..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~d-RAvt~lPRVdq-lWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWD-RAVTILPRVDQ-LWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHH-HHHHhcchHHH-HHHHHHHHHHHhcccHH
Confidence 345677888999999998765 56888898888888888 9999999999 44332222232 34444555557899999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc--CCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME--EPNDVTFSILICAYCKEENLVNALVLLEKSFSFG 177 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 177 (577)
|.++|+.-.+ ..|+...|++.|+.-.+...++.|+.++++.. .|++.+|--....=.++|+...|..+|+.....
T Consensus 160 aRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~- 236 (677)
T KOG1915|consen 160 ARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF- 236 (677)
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-
Confidence 9999998887 47999999999999999999999999999865 699999988888888999999999999887653
Q ss_pred CCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--
Q 008097 178 FVPDVV----TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGV-- 251 (577)
Q Consensus 178 ~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-- 251 (577)
-.|.. .+.+...--.++..++.|.-+|+.++.....|+.++-.+-|-... -+.|+
T Consensus 237 -~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE------------------KqfGd~~ 297 (677)
T KOG1915|consen 237 -LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE------------------KQFGDKE 297 (677)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH------------------HHhcchh
Confidence 11222 233333333345666777777766655544333332222222221 12233
Q ss_pred -hhHHHH-----HHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc--ccHHHHHHH------
Q 008097 252 -LDSALD-----VFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--SPYNSVLYG------ 317 (577)
Q Consensus 252 -~~~A~~-----~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~li~~------ 317 (577)
.++++- -|+.+...+ +.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|...|..
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCchhHHHHHHHHHHHHHHHHH
Confidence 222221 233344332 557788888888888889999999999998874 33321 123333322
Q ss_pred --HHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhh----hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 318 --LYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFC----VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 318 --~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
-....+.+.+.++++...++-| ...|+.-+-.+|+ ++.++..|.+++...+. ..|-..++...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHh
Confidence 2346888999999999988655 5577766655554 77899999999998875 6788899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHH
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 469 (577)
.++.+..++++.++.+ | |..+|......=...|+.+.|..+|+-.+. .....--...|-..|+.-...|.++.|.
T Consensus 452 efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR 527 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKAR 527 (677)
T ss_pred hHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHH
Confidence 9999999999999854 5 667888877777889999999999994444 2222223456788888888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH
Q 008097 470 MLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 470 ~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
.+++++++. .+-..+|-++..
T Consensus 528 ~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 528 ALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHh--cccchHHHhHHH
Confidence 999999864 445557877644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-10 Score=108.17 Aligned_cols=447 Identities=10% Similarity=0.011 Sum_probs=338.4
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 26 MINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLL 104 (577)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 104 (577)
+...=.+++...++. ++.++..|...+. . +.++|+-++. ...+. -|.. .-|.-++++...++.|.+++
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~-rAvec--cp~s---~dLwlAlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLE-RAVEC--CPQS---MDLWLALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHH-HHHHh--ccch---HHHHHHHHHHHHHHHHHHHH
Confidence 344456677777765 3456777766443 4 6677888887 33332 2222 23555677888899999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--------CCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008097 105 HVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--------PNDVTFSILICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 105 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
+...+. ++-+..+|.+-...--.+|+.+...++.++-.. -+...|-.=...|-..|..--+..+.......
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 999885 667888998888888889999999888877541 34445666666777778887777787777777
Q ss_pred CCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 177 GFVPD--VVTITKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 177 g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
|+.-. ..||..-...|.+.+.++-|+.+|..+++. ...|..++-..+|++....-. .....|
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lw 587 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILW 587 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHH
Confidence 76543 468888889999999999999999888877 466788888888888887633 356677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
-.....+-..|+...|..++.+..+.. +-+...|-.-+..-..+..++.|+.+|.+.... .|+...|..-+..-.
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~----sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI----SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHH
Confidence 777778888999999999999988764 336778888888899999999999999988754 346677777777777
Q ss_pred hcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
-.+..++|++++++..+..|+..- |..+...+-+.++++.|...|..=.+. .+-.+..|-.+...--+.|.+-+|..+
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999998888654 556667788889999999988877664 444466788888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 399 MKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 399 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|++..-.+ +-|...|...++.=.+.|..++|..+..+.++ + ++.+...|..-|.+..+.++-..+.+.+++.
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--e--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--- 813 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--E--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--- 813 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCccchhHHHHHHhccCcccchHHHHHHHhc---
Confidence 99988654 33677899999999999999999999887777 2 4446778899999998888877776666665
Q ss_pred CCCCCHHHHHHHHHHHHhcchHH
Q 008097 479 GILPDYLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 479 ~~~p~~~~~~~ll~~~~~~~~~~ 501 (577)
+-|+.+.-++-..+......+
T Consensus 814 --e~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 814 --EHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred --cCCchhHHHHHHHHHHHHHHH
Confidence 335555555555555444443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=119.39 Aligned_cols=409 Identities=14% Similarity=0.085 Sum_probs=238.0
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLK----IFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+.+.+.+..++..|++.+.-.++.-|..+-. ..|.+--.+.+. .+++|+.-|+..|.. .||-.+-..|+-++
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~ 319 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICA 319 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhh
Confidence 4456778888999999998887754433322 233333345666 899999999955543 57766655556566
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchH--------HHHHHHHHhcC-----------CHhHHHHHHHhcc----CCCce
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIY--------NTLIHSLCKNG-----------KVGRARSLMSDME----EPNDV 148 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~--------~~li~~~~~~g-----------~~~~A~~~~~~~~----~~~~~ 148 (577)
...|+-++..+.|.+|+.....||..-| ..|+.--.+.. +.++++-.--++. .||-.
T Consensus 320 f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa 399 (840)
T KOG2003|consen 320 FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA 399 (840)
T ss_pred eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh
Confidence 6778999999999999875433332211 22222222221 1222222222222 22211
Q ss_pred ---eHH----------H--------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cCCHhHHHHHH
Q 008097 149 ---TFS----------I--------LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS--VGRVMDAVEIL 205 (577)
Q Consensus 149 ---~~~----------~--------li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~ 205 (577)
-|. - -..-|.++|+++.|+++++-+.+..-+.-...-+.|-..+.- -.++..|.++-
T Consensus 400 ~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 400 AGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred cccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 111 0 012467788888888888777654332222222222222222 23444444443
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-----HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILI-----SSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG 280 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 280 (577)
+.++ +..-||.-. ..-..+|++++|...|++.+...-......|+ +.-.
T Consensus 480 d~al-------------------------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 480 DIAL-------------------------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHHh-------------------------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 3222 222222211 12234577777777777776542222222222 2233
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 359 (577)
+-..|++++|.+.|-++... ...+..+...+.+.|....+..+|++++.+.....| ++...+.+...|-+.|+-..
T Consensus 534 ~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhh
Confidence 55667777777777665432 111455566666777777777777777777776555 34556667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhh
Q 008097 360 AKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL-CRQGNVGTALKLVEEDM 438 (577)
Q Consensus 360 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~m 438 (577)
|.+.+-.-.+. ++-|..+..-+..-|....-+++++.+|++.-- +.|+..-|..++..| .+.|++.+|..+++ ..
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk-~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK-DI 686 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH-HH
Confidence 77666554443 455666777677777777777888888877654 568888777777666 46788888888877 44
Q ss_pred cccCCCCCCCcccHHHHHHHHHHcCC
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCEKGG 464 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~~g~ 464 (577)
. ..++.|.....-|+..++..|.
T Consensus 687 h---rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 687 H---RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred H---HhCccchHHHHHHHHHhccccc
Confidence 3 3455577777788888777774
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-10 Score=117.05 Aligned_cols=318 Identities=13% Similarity=0.048 Sum_probs=203.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
....-...+.....|++++|.+++.++++..+ .+...|-.|-..|-+. +.+++...+- . ..+-.+-|...|..+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~l-l-AAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWL-L-AAHLNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHH-H-HHhcCCCChHHHHHHHH
Confidence 44455555556666999999999999988754 5777899999999888 9999988775 3 23333446678888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCc-eeH-------HHHHHHHHhcC
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPND-VTF-------SILICAYCKEE 161 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~-------~~li~~~~~~~ 161 (577)
...+.|+++.|.-.|.+.++... ++....---+.+|-+.|+...|..-|.++-+.++ +.| -.+++.+...+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999753 3555555667889999999999999998876332 222 23456677777
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-----------------------------
Q 008097 162 NLVNALVLLEKSFSFG-FVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----------------------------- 211 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------------------------- 211 (577)
+.+.|.+.++.....+ -..+...++.++..+.+...++.|..........
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 7799999988877632 2345567778888888888888887766555441
Q ss_pred -------------hhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHH
Q 008097 212 -------------GRLGKVKGGCRFLKEMERKG--CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDT 276 (577)
Q Consensus 212 -------------~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 276 (577)
......+....+..-..... +.-++..|.-+..+|...|++.+|+.+|..+.....--+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 01111111111112222222 222334455555556666666666666665554433334455555
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
+..+|...|..++|.+.|+.+....|+ +...--.|-..+.+.|+.++|.+.+..+.
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~---~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPD---NLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCC---chhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555566666666666666655554222 33333444455555566666655555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-11 Score=113.35 Aligned_cols=218 Identities=13% Similarity=0.096 Sum_probs=172.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+.-.|+.-.|...|+..+.....++. .|.-+..+|....+.++....|....+.++. +..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~---n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE---NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC---CCchhHhHHHHHHHHHHHH
Confidence 34468888999999998876544333 2666777899999999999999999887544 6678888888888889999
Q ss_pred HHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..-|++...+.|+. ..+-.+..+..+.+.++++...|++..++ ++..+..|+.....+...++++.|.+.|+..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999999987754 45556666667888999999999999886 666788999999999999999999999999886
Q ss_pred CCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 405 HGYLPI-------AS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 405 ~g~~p~-------~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
. .|+ .. .--+++-.-.+ +++.+|..++.+.+. +.| ....|..|.....+.|+.++|+++|++
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e-----~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIE-----LDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 343 22 22223322233 899999999997666 677 556799999999999999999999998
Q ss_pred HH
Q 008097 475 MV 476 (577)
Q Consensus 475 m~ 476 (577)
..
T Consensus 563 sa 564 (606)
T KOG0547|consen 563 SA 564 (606)
T ss_pred HH
Confidence 75
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=122.02 Aligned_cols=277 Identities=13% Similarity=0.081 Sum_probs=130.4
Q ss_pred cCCHhHHHHHHHhccCC--Ccee-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHhHHHH
Q 008097 129 NGKVGRARSLMSDMEEP--NDVT-FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT--KVLELLCSVGRVMDAVE 203 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~ 203 (577)
.|+++.|++.+....+. ++.. |........+.|+++.|...|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46677776666655432 1122 222223335667777777777776543 33332222 22344555555555555
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH-------HHHHH
Q 008097 204 ILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF-------VTYDT 276 (577)
Q Consensus 204 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~ 276 (577)
.+ +.+.+..+. +......+...|.+.|++++|..++..+.+.+..++. .+|..
T Consensus 175 ~l-------------------~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 175 GV-------------------DKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HH-------------------HHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 43 333333221 4556666677777777777777777777765433221 12222
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCC
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGN 356 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 356 (577)
++.......+.+...++++.+... .+.++.....+...+...|+.++|.+.+++..+..|+. -..++.+....++
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~--~l~~l~~~l~~~~ 309 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE--RLVLLIPRLKTNN 309 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHhhccCCC
Confidence 232222333344444444444332 12244445555555555555555555555554433322 1111222223344
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+++.+..+...+. .+-|...+.++...+.+.|++++|.+.|++..+ ..|+..++..+..++.+.|+.++|.++++
T Consensus 310 ~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 310 PEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred hHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444443 122333344444444444555555555544444 23444444444444444555555544444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-10 Score=104.35 Aligned_cols=327 Identities=11% Similarity=0.056 Sum_probs=181.2
Q ss_pred CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHH
Q 008097 113 KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV--VTITKVLE 190 (577)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~ 190 (577)
..|.+.+-.....+.+.|....|+..|......-+..|.+.+....-.-+.+.+..+ . .|...|. ..=-.+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHH
Confidence 334444433444455667777777777776655455555544433222222222211 1 1112111 11122334
Q ss_pred HHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC--C
Q 008097 191 LLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGI--S 268 (577)
Q Consensus 191 ~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~ 268 (577)
++....+.+++.+-. ......|++-+...-+-...+.....++|+|+.+|+++.+... -
T Consensus 236 a~~el~q~~e~~~k~-------------------e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl 296 (559)
T KOG1155|consen 236 AYQELHQHEEALQKK-------------------ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL 296 (559)
T ss_pred HHHHHHHHHHHHHHH-------------------HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc
Confidence 555555555555432 2333444443333333334444556677777777777766521 1
Q ss_pred cCHHHHHHHHHHHHcCCChH-HHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 269 WNFVTYDTLIRGLCSGGRID-DGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 269 ~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
-|..+|+.++-.-..+.++. -|..++. +. +-.+.|...+.+-|.-.++.++|...|++..+..|.. ..|+.
T Consensus 297 ~dmdlySN~LYv~~~~skLs~LA~~v~~-id------KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTL 369 (559)
T KOG1155|consen 297 DDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID------KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTL 369 (559)
T ss_pred hhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc------cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHH
Confidence 15566666653222211111 1222111 11 1133455556666666777777777777777766654 44666
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+.+-|....+...|.+-++..++- .+.|-..|-.+.++|.-.+.+.=|+-.|++... .+| |...|.+|...|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 666777777777777777777764 234666777777777777777777777777766 345 5667777777777777
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+.++|++.|..... . -..+...|..+.++|-+.++.++|...+++..+
T Consensus 447 ~~~eAiKCykrai~--~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 447 RLEEAIKCYKRAIL--L--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cHHHHHHHHHHHHh--c--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777777774444 1 122556677777777777777777776666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-10 Score=108.82 Aligned_cols=468 Identities=12% Similarity=0.031 Sum_probs=312.5
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHH
Q 008097 10 DESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILM 88 (577)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll 88 (577)
+..-+..+++-+..+.++..|.-+-+++...+-.|+..- .+..++.-. +++.|..+.... . -...|..+.....
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~-~--le~~d~~cryL~~ 89 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTY-K--LEKRDIACRYLAA 89 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHh-h--hhhhhHHHHHHHH
Confidence 455677777777788888889888888876554454443 355666555 788887776621 1 1245777777788
Q ss_pred HHHHhcCCHhHHHHHHHHHH--hCCC-----------CCCcch----HHHHH-------HHHHhcCCHhHHHHHHHhccC
Q 008097 89 KGLCLTNRVGDGFKLLHVMK--SRGV-----------KPNSVI----YNTLI-------HSLCKNGKVGRARSLMSDMEE 144 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~--~~g~-----------~~~~~~----~~~li-------~~~~~~g~~~~A~~~~~~~~~ 144 (577)
.++.+..+++.|..++.... ..++ .+|..- -+.-. ..|....+.++|+..|.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 88889999999998887220 0111 111111 01111 224444567777777777766
Q ss_pred CCceeHHHHHHHHHhc-CChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHH----------HhcC-----CHhHHHH-HHH
Q 008097 145 PNDVTFSILICAYCKE-ENLVNALVLLEKSFSF-GFVPDVVTITKVLELL----------CSVG-----RVMDAVE-ILE 206 (577)
Q Consensus 145 ~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----------~~~g-----~~~~a~~-~~~ 206 (577)
.|+..+.++...-... --.++-..+|+.+--. -..-+....-.+.... .+.+ ...+-.. +.+
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 6666555443221110 0001111122110000 0000111111111100 0000 0000000 111
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 207 ESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 207 ~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
.+...-..+++.+-.++++.+.+. .+++...+..-|..+...|+..+-..+=.++.+. .|-...+|-++.--|...|+
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcC
Confidence 111114566777777777777765 2345666666777888999988888888888765 35577899999999999999
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHH
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFD 365 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~ 365 (577)
..+|++.|.+....++.. ...|-.+...|.-.|..++|+..+..+.+..|.... +.-+..-|.+.++.+.|.+.|.
T Consensus 328 ~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred cHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999988764332 346889999999999999999999999887666544 3444556888999999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 366 QMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH--GYL---P-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 366 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+.... .+-|+...+-+.-.....+.+.+|..+|+..... .+. + -..+++.|..+|.+.+.+++|+..+++.+.
T Consensus 405 ~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99875 3446888888888888889999999999987721 011 1 234688899999999999999999998777
Q ss_pred ccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008097 440 GIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 495 (577)
Q Consensus 440 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 495 (577)
..| +..+|..+.-.|...|+++.|.+.|.+.. .++||..+-..+|+-+.
T Consensus 484 -----l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 484 -----LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred -----cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 556 89999999999999999999999999998 78999988888888654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=120.56 Aligned_cols=288 Identities=12% Similarity=0.063 Sum_probs=136.3
Q ss_pred hcCCHhHHHHHHHhccC--CCce-eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 008097 128 KNGKVGRARSLMSDMEE--PNDV-TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEI 204 (577)
Q Consensus 128 ~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 204 (577)
..|+++.|.+.+.+..+ |+.. .+-.....+.+.|+.+.|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555555443 2111 12222234445566666666665554332111111222234444445555444444
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHH---
Q 008097 205 LEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGL--- 281 (577)
Q Consensus 205 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~--- 281 (577)
++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+..+.......-..++
T Consensus 176 -------------------l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 176 -------------------VDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred -------------------HHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3333333221 44556666667777777777777777777665332221111111111
Q ss_pred HcCCChHHHHHHHHHHHhccC-CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh---HHHHHHhhhcCCH
Q 008097 282 CSGGRIDDGLKILQLMEDSKE-GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR---SLKILGFCVDGNV 357 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~ 357 (577)
...+..+++.+.+..+....+ ..+.+...+..+...+...|+.++|.+.+++..+..|+.... ..........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 111222222223333333211 011245556666667777777777777777776665554421 1111122233455
Q ss_pred HHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNV--VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+.+.+.+++..+. .+-|+ ....++...+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555543 11222 34445555566666666666666632222234555555566666666666666666655
Q ss_pred H
Q 008097 436 E 436 (577)
Q Consensus 436 ~ 436 (577)
+
T Consensus 395 ~ 395 (409)
T TIGR00540 395 D 395 (409)
T ss_pred H
Confidence 3
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-14 Score=131.87 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..++.. ...+++++|.+++....+. .++...+..++..+.+.++++++.++++.+... ...+.+...|..+...+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIY 156 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHH
T ss_pred ccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHH
Confidence 3333333 4555555555555544332 234444555555555556666655555555432 12233444455555555
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.+.|+.++|++.+++..+..|+ ......++..+...|+.+++..++....+.. +.|...|..+..+|...|+.++|+.
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 5555555555555555555553 3334445555555555555555555554431 3445556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.|++..+.. +.|..+...+..++...|+.++|.++..
T Consensus 236 ~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 236 YLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ccccccccc-cccccccccccccccccccccccccccc
Confidence 666666532 2255555666666666666666666655
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-12 Score=122.89 Aligned_cols=275 Identities=15% Similarity=0.072 Sum_probs=209.1
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHcCCChHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDG--ISWNFVTYDTLIRGLCSGGRIDD 289 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~ 289 (577)
...-+..+|...|..+... +.-.......+..+|...+++++|.++|+.+.+.. .--+..+|++.+--+-+ . -
T Consensus 330 ~s~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--~--v 404 (638)
T KOG1126|consen 330 LSQYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--E--V 404 (638)
T ss_pred HHHHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh--h--H
Confidence 3445667888888886554 22233455667789999999999999999998752 11266788887754422 1 1
Q ss_pred HHHHH-HHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 290 GLKIL-QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 290 a~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+...+ +.+.+. .+..+.+|.++.++|.-.++.+.|++.|++..++.| ...+|+.+.+-+.....+|.|...|+..
T Consensus 405 ~Ls~Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 405 ALSYLAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 22222 222322 233678999999999999999999999999999988 5678888888999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL 446 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~ 446 (577)
+.. .+.+...|--+...|.+.++++.|+-.|++..+ +.| +.+....+...+-+.|+.++|+++++++.. +.
T Consensus 482 l~~-~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----ld 553 (638)
T KOG1126|consen 482 LGV-DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----LD 553 (638)
T ss_pred hcC-CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----cC
Confidence 873 112344555677889999999999999999998 557 566677788888999999999999997666 56
Q ss_pred C-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcchHHHHH
Q 008097 447 P-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY-LTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 447 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~ 504 (577)
| |+-.--..+..+...+++++|+..++++.+ +.|+. .++..+-..|.+-|+.+++.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHH
Confidence 6 666666677888899999999999999985 66775 55666777788888776553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-10 Score=112.12 Aligned_cols=325 Identities=15% Similarity=0.129 Sum_probs=228.1
Q ss_pred HHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 008097 125 SLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDA 201 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 201 (577)
.....|++++|.+++.++.. .+...|.+|...|-..|+.+++...+-..-... +-|...|..+.....+.|.+..|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 33444999999999988875 456789999999999999999887765543332 33567788887777778878777
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHH
Q 008097 202 VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNF----VTYDTL 277 (577)
Q Consensus 202 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~l 277 (577)
.-+|..+++ .. +++...+---+..|-+.|+...|...|.++.....+.|. .+...+
T Consensus 227 ~~cy~rAI~-------------------~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 227 RYCYSRAIQ-------------------AN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHh-------------------cC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 777655433 21 123344444566788889999999999988876322222 223344
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCC----------------
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFP---------------- 339 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p---------------- 339 (577)
++.+...++-+.|.+.++..... .+...+...++.++..+.+..+++.|......... ..+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 56677777778888888877763 23344666788888889999999988887776654 111
Q ss_pred ------CceehHH----HHHHhhhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 340 ------RAVDRSL----KILGFCVDGNVEDAKRCFDQMIEEGGV--PNVVIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 340 ------~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
+..++.. ++.+..+....+....+.......... -+...|.-+..+|...|++.+|+.+|..+.....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1111211 122233334444444444445544433 3456788889999999999999999999997544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 408 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
--+...|.-+.+.|...|..++|.+.+++.+. ..| +...-..|...+.+.|+.++|.+.+..+.
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-----~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLI-----LAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 45677898999999999999999999996665 566 56677788889999999999999999973
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.1e-11 Score=116.36 Aligned_cols=144 Identities=13% Similarity=0.034 Sum_probs=86.1
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 008097 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEY 330 (577)
Q Consensus 251 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (577)
+.+...++++.+.+. .+.+......+...+...|+.++|.++++...+. +++. --.++.+....++.+++++.
T Consensus 244 ~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~--~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 244 GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDE--RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCH--HHHHHHhhccCCChHHHHHH
Confidence 344444455444332 1335555666666666666666666666665543 1111 11223333445666666666
Q ss_pred HHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 331 LKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 331 ~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+...+..|+... ...+...+.+.+++++|.+.|+...+ ..|+..++..+...+.+.|+.++|.+++++-.
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666665443 44556666677777777777777766 35777777777777777777777777777664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-09 Score=96.40 Aligned_cols=420 Identities=10% Similarity=0.013 Sum_probs=297.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
.+..-+..=.++..+..|+.+++.....-|.-|. .|-..+-.=-.. +...|+++|++.|. ..|+...|.+.|+.-
T Consensus 109 LWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fE 184 (677)
T KOG1915|consen 109 LWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFE 184 (677)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHH
Confidence 4445566667888999999999999764333333 344433333333 89999999996553 589999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CC----ceeHHHHHHHHHhcCChHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PN----DVTFSILICAYCKEENLVN 165 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~ 165 (577)
.+-+.++.|..+++..+- +.|++..|-.....-.++|.+..|+.+|+...+ .| ...+++....=.++..++.
T Consensus 185 lRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 185 LRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred HHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 468999999999999999999999999998775 22 2334444444445667778
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 166 ALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
|.-+|+-.+..=.+-. ...|......--+.|+...-....-. .-.--++.+.+.+. .|..+|--.+.
T Consensus 263 ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~-----------KRk~qYE~~v~~np-~nYDsWfdylr 330 (677)
T KOG1915|consen 263 ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG-----------KRKFQYEKEVSKNP-YNYDSWFDYLR 330 (677)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh-----------hhhhHHHHHHHhCC-CCchHHHHHHH
Confidence 8777777665421111 23333333333334443332222100 00112444554433 37788888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHH----H----HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNF--VTYDTLI----R----GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll----~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
.-...|+.+...++|++.... ++|-. ..|.-.| + .=....+++.+.++++...+. ++....|+..+
T Consensus 331 L~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l---IPHkkFtFaKi 406 (677)
T KOG1915|consen 331 LEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL---IPHKKFTFAKI 406 (677)
T ss_pred HHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---cCcccchHHHH
Confidence 888899999999999999865 45522 1122111 1 113457899999999988874 44455666554
Q ss_pred HHHH----HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 315 LYGL----YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
--+| .++.++..|.+++......-|....+...|..-.+.+.++.+..++++.++-+ +-|..+|.-....-...|
T Consensus 407 WlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~Lg 485 (677)
T KOG1915|consen 407 WLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLG 485 (677)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhh
Confidence 4444 46788999999999999999999999999999999999999999999999864 347788998888888899
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHH
Q 008097 391 RVREASELMKEMTGHG-YLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 460 (577)
+.+.|..+|.-.++.. +......|.+.++-=...|.++.|..++++.+. ..+...+|..+..--.
T Consensus 486 dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~-----rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 486 DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD-----RTQHVKVWISFAKFEA 551 (677)
T ss_pred hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH-----hcccchHHHhHHHHhc
Confidence 9999999999998643 222344577777777889999999999995555 3455557776665444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-14 Score=130.61 Aligned_cols=228 Identities=20% Similarity=0.196 Sum_probs=92.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|...|..+.......++++.|...++++...+.. +...+..++.. ...+++++|.+++....+. .++...+..+
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~----~~~~~~l~~~ 116 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER----DGDPRYLLSA 116 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc----ccccchhhHH
Confidence 4445555555666677888888888888765422 44556566655 5777888888777665443 1245556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcC---CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLF---PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g 390 (577)
+..+.+.++++++.++++.+.... ++...|..+...+.+.|+.++|.+.|++..+. .| |....+.++..+...|
T Consensus 117 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 117 LQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp -H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 777778888888888887766432 34445566666777888888888888888775 34 4667777777777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 469 (577)
+.+++.+++....+.. +.|...+..+..++...|+.++|..+|++... ..| |+.....+.+++...|+.++|.
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~-----~~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK-----LNPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH-----HSTT-HHHHHHHHHHHT---------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 8887777777776542 34555667777777888888888888875444 345 6777777888888888888888
Q ss_pred HHHHHHH
Q 008097 470 MLLVQMV 476 (577)
Q Consensus 470 ~~~~~m~ 476 (577)
++.++..
T Consensus 269 ~~~~~~~ 275 (280)
T PF13429_consen 269 RLRRQAL 275 (280)
T ss_dssp -------
T ss_pred ccccccc
Confidence 7777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.8e-10 Score=103.57 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=57.9
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+..-|+-.++.++|...|++..+.+ +.....|+.|..-|...++...|++-++..++ +.| |...|-.+..+|.-.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhc
Confidence 3334444444555555555554431 11234455555555555555555555555544 223 4444555555555555
Q ss_pred CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...-|+-+|+++.. ++| |+..|..|.++|.+.++.++|.+.+++...
T Consensus 413 Mh~YaLyYfqkA~~-----~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 413 MHFYALYYFQKALE-----LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred chHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 55555555553333 444 444555555555555555555555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-10 Score=113.72 Aligned_cols=300 Identities=10% Similarity=-0.048 Sum_probs=208.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008097 190 ELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV-DTYNILISSYCETGVLDSALDVFNDMKIDGIS 268 (577)
Q Consensus 190 ~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 268 (577)
..+....+..++.+.+.+..-....|+++.|.+.+....+.. |+. ..+-....++.+.|+++.|...+.+..+. .
T Consensus 73 ~~~~~~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~ 148 (409)
T TIGR00540 73 RGWFSGRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--A 148 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--C
Confidence 344444455566666655555577788888888887776653 332 33444456777889999999999998765 3
Q ss_pred cCH--HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehH
Q 008097 269 WNF--VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRS 345 (577)
Q Consensus 269 ~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 345 (577)
|+. .........+...|+++.|.+.++.+.+..|. +...+..+...+.+.|++++|.+.+....+.. ++...+.
T Consensus 149 p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 149 GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 443 23444577788899999999999999987433 66678899999999999999999999998763 2222221
Q ss_pred H-HHH---HhhhcCCHHHHHHHHHHHHHcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---H
Q 008097 346 L-KIL---GFCVDGNVEDAKRCFDQMIEEGG---VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF---N 415 (577)
Q Consensus 346 ~-l~~---~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~ 415 (577)
. ... .....+..+.+...+..+..... +.+...+..+...+...|+.++|.+++++..+. .||.... .
T Consensus 226 ~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 226 DLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 1 111 11222333333345555554311 137888999999999999999999999999974 3554421 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-Cc--ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GS--GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
.........++.+.+.+.+++.++ ..| |+ ....++...+.+.|++++|.+.|+........||...+..+..
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk-----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAK-----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHH-----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 122223445788889999986565 355 44 5677899999999999999999995333346799988888888
Q ss_pred HHHhcchHHHH
Q 008097 493 CLSQQTTWLLL 503 (577)
Q Consensus 493 ~~~~~~~~~~~ 503 (577)
.+.+.|+.+.+
T Consensus 379 ll~~~g~~~~A 389 (409)
T TIGR00540 379 AFDQAGDKAEA 389 (409)
T ss_pred HHHHcCCHHHH
Confidence 88888876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.5e-12 Score=120.60 Aligned_cols=192 Identities=14% Similarity=0.036 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+.+|-++...|.-.++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+.....++. +-..|.-+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r---hYnAwYGl 495 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR---HYNAWYGL 495 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch---hhHHHHhh
Confidence 444555555555555555555555554433 22 3344444444444444555555555544433110 12223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...|.+.++++.|+-.|+++.++.|.. +....+...+-+.|+.++|+++|++...... .|+..---.+..+...++++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHHHHhhcchH
Confidence 444455555555555555554444432 2223333344444445555555554444321 12222222333334444444
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+|+..++++++ +.|+.. .|..+...|.+.|..+.|+.-|.
T Consensus 575 eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 575 EALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred HHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 55555544444 233322 24444444444444444444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-10 Score=100.63 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh--
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD-- 237 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-- 237 (577)
+++.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..+|..+... ||..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----------------------pdlT~~ 104 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----------------------PDLTFE 104 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----------------------CCCchH
Confidence 456677777777776532 223344556667777777777777776554332 2211
Q ss_pred ----hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc----c
Q 008097 238 ----TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI----S 309 (577)
Q Consensus 238 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~ 309 (577)
..-.|..-|...|-+|.|..+|..+.+.| ..-......|+..|-...++++|+++-+++.+. +..+.. .
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~--~~q~~~~eIAq 181 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKL--GGQTYRVEIAQ 181 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--CCccchhHHHH
Confidence 22334556778888899999998888654 223455667888888888889988888877766 211111 1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHH-HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSL-KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.|.-+...+....+.+.|..++.+..+..|+.+--+. +...+...|+++.|.+.++.+.+.+..--..+...+..+|.+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1334444445556666677777766666555544433 334555666666666666666665332223455566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH---cCCh
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE---KGGF 465 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~---~g~~ 465 (577)
.|+.++.+..+.++.+..-.++. -..+...-....-.+.|..++.+.++ -.|+...+..+++.-.. -|+.
T Consensus 262 lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 262 LGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred hCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhhccccccch
Confidence 66666666666666654322222 22222222222223344444333444 35666555555554332 2334
Q ss_pred hHHHHHHHHHH
Q 008097 466 QSASMLLVQMV 476 (577)
Q Consensus 466 ~~A~~~~~~m~ 476 (577)
++-+.+++.|.
T Consensus 335 k~sL~~lr~mv 345 (389)
T COG2956 335 KESLDLLRDMV 345 (389)
T ss_pred hhhHHHHHHHH
Confidence 55555555554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-09 Score=108.17 Aligned_cols=478 Identities=13% Similarity=0.062 Sum_probs=257.6
Q ss_pred CCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHh
Q 008097 4 SIQSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDY 82 (577)
Q Consensus 4 ~~g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~ 82 (577)
..|+.|+..+|.++|.-|+..|+.+.|- +|..|.-....-+...++.++.+.... +.+.+. .|-+.
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aD 84 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLAD 84 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchh
Confidence 5689999999999999999999999988 999987665666778888888887665 443332 57788
Q ss_pred hHHHHHHHHHhcCCHhH---HHHHHHHHH----hCCCCC-Ccc-------------hHHHHHHHHHhcCCHhHHHHHHHh
Q 008097 83 TYAILMKGLCLTNRVGD---GFKLLHVMK----SRGVKP-NSV-------------IYNTLIHSLCKNGKVGRARSLMSD 141 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~---a~~~~~~~~----~~g~~~-~~~-------------~~~~li~~~~~~g~~~~A~~~~~~ 141 (577)
||..|+.+|.+.||+.. .++.+..+. ..|+.. ... --...+....-.|-++.+++++..
T Consensus 85 tyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998765 222222221 122211 011 112344445556677777777776
Q ss_pred ccC--CCceeHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-------
Q 008097 142 MEE--PNDVTFSILICAYCKEEN-LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ------- 211 (577)
Q Consensus 142 ~~~--~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 211 (577)
++- .+. +.-..++-+..... +++-....+.... .|++.+|..++..-...|+.+.|..++..|.+.
T Consensus 165 ~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 165 VPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred CCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 663 111 11112433333222 2333333333322 578888888888888888888888888777766
Q ss_pred ------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHH-----------HHHHHHH----------
Q 008097 212 ------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALD-----------VFNDMKI---------- 264 (577)
Q Consensus 212 ------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-----------~~~~m~~---------- 264 (577)
...++...+..+.+-|.+.|+.|+..|+..-+..+..+|....+.. ++..|..
T Consensus 241 yFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 241 YFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred cchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 3456666777778888888888888888777666666544221111 1111110
Q ss_pred ---------------CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-CcccHHHHHHHHHhcCCHHHHH
Q 008097 265 ---------------DGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-RISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 265 ---------------~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.|+.....+|...+. ....|.-++..++...+........+ ++..+..++.-|.+.-+..-..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 011111111211111 11134444444444443322111111 1122323232222211110000
Q ss_pred HHHH--HHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-----------CCHhhHHHHHHHHHhcCCHHHH
Q 008097 329 EYLK--QMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-----------PNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 329 ~~~~--~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A 395 (577)
.++. +..+...+... ...+.-+...-....+.+-+......... +-...-+.++..++..-+..++
T Consensus 400 ~i~~~~qgls~~l~se~-tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSED-TPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHhhhchhh-hHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000000 00011111111111122222211111000 1112234555556555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+..-++.... .-| -.|..++.-|.+....+.|..+.+ .....+..+.-+..-+..+.+.+.|.+...++..+++++
T Consensus 479 l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~-e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 479 LCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVD-EIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchh-hhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 5444433322 112 368889999999999999999998 555334445557777899999999999999999999999
Q ss_pred HHCCC-CCC-HHHHHHHHHHHHhcchHHHHH
Q 008097 476 VGKGI-LPD-YLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 476 ~~~~~-~p~-~~~~~~ll~~~~~~~~~~~~~ 504 (577)
.+.-. +|. ..+.--++++....|..+..+
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lk 585 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLK 585 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHH
Confidence 86422 233 344555667767777665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-10 Score=98.79 Aligned_cols=298 Identities=14% Similarity=0.176 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc------hHH
Q 008097 47 KIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSV------IYN 120 (577)
Q Consensus 47 ~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------~~~ 120 (577)
..|-.-++.+..++.++|.++|- +|.+.. +-+..+--+|-+.|.+.|..+.|+++|+.+.++ ||.. ..-
T Consensus 37 r~Yv~GlNfLLs~Q~dKAvdlF~-e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~ 111 (389)
T COG2956 37 RDYVKGLNFLLSNQPDKAVDLFL-EMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQ 111 (389)
T ss_pred HHHHhHHHHHhhcCcchHHHHHH-HHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHH
Confidence 44666667777779999999999 776632 123344556778888999999999999999885 4432 334
Q ss_pred HHHHHHHhcCCHhHHHHHHHhccCCCc---eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 008097 121 TLIHSLCKNGKVGRARSLMSDMEEPND---VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR 197 (577)
Q Consensus 121 ~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 197 (577)
.|..-|...|-+|+|+.+|..+.+... .....|+..|-...+|++|++.-+++.+.+..+..+- +...||..-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e---IAqfyCELAq 188 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE---IAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH---HHHHHHHHHH
Confidence 566778999999999999999887333 3566788999999999999999998887665443211 1222322111
Q ss_pred HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHH
Q 008097 198 VMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTL 277 (577)
Q Consensus 198 ~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 277 (577)
-. ....+.+.|..++....+.+.+ .+..--.+-+.+...|+++.|.+.++...+.+..--..+...|
T Consensus 189 ~~------------~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 189 QA------------LASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred HH------------hhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 00 1112233333334444433221 2333334445566666666666666666655333334455556
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCH
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNV 357 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 357 (577)
..+|.+.|+.++....+..+.+. .+....-..+-.--....-.
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~-------------------------------------~~g~~~~l~l~~lie~~~G~ 298 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET-------------------------------------NTGADAELMLADLIELQEGI 298 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc-------------------------------------cCCccHHHHHHHHHHHhhCh
Confidence 66666666666666666655554 22222222222211122223
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHh
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ---EERVREASELMKEMTG 404 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 404 (577)
+.|.....+-... +|+...+..+|+.-.. .|...+.+.+++.|..
T Consensus 299 ~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 299 DAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3444333333332 4777777777765543 3456677777777764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-08 Score=94.85 Aligned_cols=458 Identities=14% Similarity=0.074 Sum_probs=261.8
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 12 SIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
..+.+=++.+...|++++|.+....++..++. +...+..=+-++.+. .|++|+.+.+. ..+...+.+-+ +=++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKA 86 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKA 86 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHH
Confidence 45566678889999999999999999987643 445555556667777 99999976651 11111111111 3456
Q ss_pred HH--hcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 91 LC--LTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 91 ~~--~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
|| +.+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+..--.....
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 65 8999999999988 33333 3366666777889999999999999998776666655554322111111111
Q ss_pred HHHHHHHhCCCCCCHhhHHHHH---HHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh-hHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVL---ELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD-TYNILI 243 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li 243 (577)
+ .+......| ..+|..+. -.+...|++..|+++++.+.+.++..-.++... =+++.. ... .-.-|.
T Consensus 162 ~---~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~-----el~~IrvQla 231 (652)
T KOG2376|consen 162 Q---LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEE-----ELNPIRVQLA 231 (652)
T ss_pred H---HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHH-----HHHHHHHHHH
Confidence 1 222233333 33454444 345678999999999888755422211111111 001111 111 112344
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHH----HHHHHHHHHcCCChH-HHHHHHHHHHhccC---------CCCCCcc
Q 008097 244 SSYCETGVLDSALDVFNDMKIDGISWNFVT----YDTLIRGLCSGGRID-DGLKILQLMEDSKE---------GSKGRIS 309 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~---------~~~~~~~ 309 (577)
-.+-..|+.++|..++...++.. ++|... -|.++..-....-++ .+...++....... .......
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45667899999999999998775 344422 222332211111111 11122221111000 0000111
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhh-hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFC-VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.-+.++..| .+..+.+.++........|....-..+..++- +......+..++....+........+.-.++.....
T Consensus 311 ~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 311 RNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 112233332 34445555555555444454443333333332 223467777777777665333335566777788889
Q ss_pred cCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-------HHHHHhhcccCCCCCCCcccHH
Q 008097 389 EERVREASELMK--------EMTGHGYLPIASTFNTVLSGLCRQGNVGTAL-------KLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 389 ~g~~~~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
.|+++.|++++. ...+.+..|.. ...+...+.+.++.+.|. .+|...+. . -.--..++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t--~--s~~l~~~~~ 462 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT--G--SIALLSLMR 462 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc--c--chHHHhHHH
Confidence 999999999999 66666656654 445566667766654444 44443333 1 111223344
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
-++..-.+.|+-++|..+++++.+. ..+|..+...++.++++-.-.
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~e 508 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPE 508 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHH
Confidence 4455556789999999999999864 467788999999999876543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-08 Score=96.19 Aligned_cols=406 Identities=15% Similarity=0.146 Sum_probs=246.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC-HhhHHHHHHH
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPS-LKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD-DYTYAILMKG 90 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~-~~~~~~ll~~ 90 (577)
+-...+-|.+.|++++|++.+.+.++. .|+ .+-|...-.+|..- +++++.+.-. ...+ +.|+ +-.+..-.++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~T-kALE--l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCT-KALE--LNPDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHH-HHhh--cCcHHHHHHHHHHHH
Confidence 345667788999999999999999884 566 56677777777777 8988887665 2322 4555 3334444556
Q ss_pred HHhcCCHhHHHHHHHHHHh-CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhc---------
Q 008097 91 LCLTNRVGDGFKLLHVMKS-RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKE--------- 160 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~--------- 160 (577)
+-..|++++|+.=..-..- .|+. |..+--.+=+.+-+.| ...+.+-|..=..|...+ ++.|..|...
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPS-ATFIASYFGSFHADPKPLF 269 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCc-HHHHHHHHhhccccccccc
Confidence 6677777776542221111 1221 1111111111111111 122222332111122111 1222222111
Q ss_pred ---CC-----hHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHhcCCHhHHHHHHHHHHH-----hhhcCChhHHHH
Q 008097 161 ---EN-----LVNALVLLEKSFSFGFVP-----DVVTITKVLELLCSVGRVMDAVEILEESGE-----QGRLGKVKGGCR 222 (577)
Q Consensus 161 ---~~-----~~~A~~~~~~m~~~g~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~g~~~~a~~ 222 (577)
++ ..++++.+..-...|... +..++......+.+ ..+.-.+..-..+. ..-+|+...|..
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~le~~A~al~~~gtF~fL~g~~~~a~~ 347 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAELEYMAEALLLRGTFHFLKGDSLGAQE 347 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhHHHHHHHHHHhhhhhhhcCCchhhhh
Confidence 00 112222221111111000 00111111111111 11111111111111 145678888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
-|+........++ ..|--+..+|....+.++....|....+.. +-|+.+|..-.+++.-.+++++|..-|++....++
T Consensus 348 d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p 425 (606)
T KOG0547|consen 348 DFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP 425 (606)
T ss_pred hHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 8888887644432 237778889999999999999999998765 33666777777777778999999999999988743
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC------
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN------ 375 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------ 375 (577)
. ++..|-.+.-+..+.+++++++..|++..+..|+. ..|+.....+...++++.|.+.|+..++. .|+
T Consensus 426 e---~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v 500 (606)
T KOG0547|consen 426 E---NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV 500 (606)
T ss_pred h---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence 3 66777777778888999999999999999988875 56788888999999999999999999885 333
Q ss_pred -Hh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 -VV--IYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 -~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+. .--.++..- -.+++..|++++++..+ +.|- ...+.+|...-...|+.++|+++|++...
T Consensus 501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 111222111 23889999999999998 4463 45688899999999999999999996554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-08 Score=88.75 Aligned_cols=182 Identities=9% Similarity=0.011 Sum_probs=87.1
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcC
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV-KE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTN 95 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 95 (577)
+.-+....++..|+.+++.-...+-. .....+..|..|. +. ++++|+..|. .+... -.|+...+..|.-+..-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~-~~~~~-~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYT-FLMNK-DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHH-HHhcc-CCCCcccchhHHHHHHHHH
Confidence 34445567888888887776543321 2223444444433 33 8888888887 33332 2455555555555555677
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
.+.+|.++-....+ ++-.-..|++.-.+.++-++-..+-+.+.... .---+|.+.....-.+++|+++|++.+.
T Consensus 106 ~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777776555432 22222333344445555444444433333211 1111222222233345566666655543
Q ss_pred CCCCCCHhhHHHHH-HHHHhcCCHhHHHHHHHHHHH
Q 008097 176 FGFVPDVVTITKVL-ELLCSVGRVMDAVEILEESGE 210 (577)
Q Consensus 176 ~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~ 210 (577)
. .|+-...+.-+ -+|.+..-++-+.++++..++
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3 22323333222 233444444444444444333
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-12 Score=85.64 Aligned_cols=50 Identities=42% Similarity=0.842 Sum_probs=46.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 423 (577)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-09 Score=95.92 Aligned_cols=280 Identities=14% Similarity=0.049 Sum_probs=139.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLM 139 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 139 (577)
++.+|.++.. .-.+.+-.| ...|..-..+.-+.|+.+.+-..+.+.-+.--.++..+.-+........|+++.|+.-.
T Consensus 99 ~~~qAEkl~~-rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 99 DFQQAEKLLR-RNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cHHHHHHHHH-HhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6677766666 444444332 23344444455566777777777776666533445555666666666667777666665
Q ss_pred HhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008097 140 SDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV-------VTITKVLELLCSVGRVMDAVEILEESG 209 (577)
Q Consensus 140 ~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~ 209 (577)
+++.+ .+.........+|.+.|++.+...++.+|.+.|.--|+ .+|..++.-....+..+.-...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~----- 251 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW----- 251 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH-----
Confidence 55442 45556666667777777777777777777666654332 1233333322222222221111
Q ss_pred HhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH
Q 008097 210 EQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD 289 (577)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 289 (577)
++..... .+-++..-.+++.-+.++|+.++|.++..+..+.+..|+ ... .-.+.+.++...
T Consensus 252 --------------W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~ 312 (400)
T COG3071 252 --------------WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEP 312 (400)
T ss_pred --------------HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchH
Confidence 1111111 111333444455555556666666666655555544433 111 112334444444
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHH
Q 008097 290 GLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMI 368 (577)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (577)
-.+..+.-.+.. +.++..+.+|...|.+++.+.+|.+.|+...+..|+..+|..+.++|.+.|+..+|.+++++..
T Consensus 313 l~k~~e~~l~~h---~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 313 LIKAAEKWLKQH---PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhC---CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 444444433321 1133445555555555555555555555555544444444444444444444444444444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-07 Score=90.80 Aligned_cols=333 Identities=13% Similarity=0.065 Sum_probs=197.7
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----hhcCChhHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ----GRLGKVKGGCRFL 224 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~g~~~~a~~~~ 224 (577)
.|++|...|.+.|.+++|..+|++.... ..+..-|+.+.++|+.-.....+..+- ..... ...-+++-...-|
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHH
Confidence 5777777788888888888887776543 234445556666665432222221111 00000 0111233333445
Q ss_pred HHHHHcCC-----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC------HHHHHHHHHHHHcCCCh
Q 008097 225 KEMERKGC-----------LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN------FVTYDTLIRGLCSGGRI 287 (577)
Q Consensus 225 ~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~ll~~~~~~g~~ 287 (577)
+.+...+. +-++..|..-+. ...|+..+-...|.+..+. +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 54444321 113444444333 2346677778888887754 2222 24578889999999999
Q ss_pred HHHHHHHHHHHhccCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------------------ceehHHH
Q 008097 288 DDGLKILQLMEDSKEGSKGR-ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-------------------AVDRSLK 347 (577)
Q Consensus 288 ~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------------------~~~~~~l 347 (577)
+.|+.+|++......+...+ ..+|..-..+=.++.+++.|+++.+.....+.. ...|+..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 99999999987652111101 234555666667788899999988887643211 2234555
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH---h
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSGLC---R 423 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~ 423 (577)
++---..|-++....+++++++..+. ++..--....-+-.+.-++++.+++++-+..=--|+.. .|+..+.-+. .
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 55556778999999999999987543 22222222233445677889999888766542235543 4666555443 2
Q ss_pred cCCHHHHHHHHHHhhcccCCCCCCCc--ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 008097 424 QGNVGTALKLVEEDMRGIGRGSLPGS--GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY--LTWNSLLIC 493 (577)
Q Consensus 424 ~g~~~~a~~~~~~~m~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~ 493 (577)
....+.|..+|++.+. +++|.. ..|-.....--+.|....|.+++++.... +++.. ..||..|.-
T Consensus 563 g~klEraRdLFEqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~k 631 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKK 631 (835)
T ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 3468999999996555 466522 22344444445678889999999997653 55543 557776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-08 Score=92.81 Aligned_cols=288 Identities=12% Similarity=0.092 Sum_probs=155.8
Q ss_pred cCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 129 NGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
.|++.+|+++..+-.+ .....|..-..+--+.|+.+.+-.++.+..+....++...+.+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~- 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN- 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH-
Confidence 3666666666655443 112223333344445556666666665554432233333344444444444444444332
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
..++.+.+.. +.........+|.+.|++.....+...|.+.|.-.|...-.
T Consensus 176 ------------------v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------- 226 (400)
T COG3071 176 ------------------VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------- 226 (400)
T ss_pred ------------------HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------
Confidence 2333333222 34445555555555566655555555555554333321100
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK-LFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
+ ...+|..+++-....+..+.-...++.... ...++..-..++.-+..+|+.++|.++.
T Consensus 227 -----------l---------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i 286 (400)
T COG3071 227 -----------L---------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEII 286 (400)
T ss_pred -----------H---------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHH
Confidence 0 001233333333333333333333433332 2223333445555566777777777777
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCC
Q 008097 365 DQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG-HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGR 443 (577)
Q Consensus 365 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~ 443 (577)
.+..+++..|+ -...-.+.+-++...-++..++..+ .+. ++-.+.++...|.+.+.+.+|..+|+..+.
T Consensus 287 ~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---- 356 (400)
T COG3071 287 EDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALK---- 356 (400)
T ss_pred HHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh----
Confidence 77777655554 1222334566677777776666653 333 335677788888888888888888885555
Q ss_pred CCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 444 GSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 444 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..|+..+|+-+.+++.+.|+.++|.+..++...
T Consensus 357 -~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 357 -LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 678888888888888888888888888877653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-12 Score=83.48 Aligned_cols=50 Identities=50% Similarity=0.906 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS 283 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 283 (577)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-07 Score=86.04 Aligned_cols=470 Identities=13% Similarity=0.121 Sum_probs=251.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH
Q 008097 15 ITVIRGLGRARMINDVVKATDLVSRFN-MTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLC 92 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~ 92 (577)
-.-+..+.++|++..-+..|+..+..- +.-....|...+...... -++-+..+|+ ...+ + ++..-+-.|..++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyr-RYLk--~--~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYR-RYLK--V--APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHH-HHHh--c--CHHHHHHHHHHHH
Confidence 333444556677777777777765421 111233455555555555 5556666666 2222 1 2222334445555
Q ss_pred hcCCHhHHHHHHHHHHh----------------------------------------CCC--CCC--cchHHHHHHHHHh
Q 008097 93 LTNRVGDGFKLLHVMKS----------------------------------------RGV--KPN--SVIYNTLIHSLCK 128 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~----------------------------------------~g~--~~~--~~~~~~li~~~~~ 128 (577)
..+++++|.+.+..++. .|+ -+| -..|.+|.+-|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 55555555544444321 111 111 2357999999999
Q ss_pred cCCHhHHHHHHHhccC--CCceeHHHHHHHHHhcCCh----------------------HHHHHHHHHHHhCCC------
Q 008097 129 NGKVGRARSLMSDMEE--PNDVTFSILICAYCKEENL----------------------VNALVLLEKSFSFGF------ 178 (577)
Q Consensus 129 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~----------------------~~A~~~~~~m~~~g~------ 178 (577)
.|.+++|..+|++... -.+.-|+.+..+|+.-... +-.+..|+.+...+.
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999998765 3455577777777653221 122223333332210
Q ss_pred -----CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---------------------hhcCChhHHHHHHHHHHHcCC
Q 008097 179 -----VPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---------------------GRLGKVKGGCRFLKEMERKGC 232 (577)
Q Consensus 179 -----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------~~~g~~~~a~~~~~~~~~~~~ 232 (577)
+-++.+|..-+..+ .|+..+-...+.++++. ...|+++.|+.+|++...-..
T Consensus 341 lLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11122222222211 23344444455554444 456677777777776655422
Q ss_pred CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-----------c------CHHHHHHHHHHHHcCCChHHHHH
Q 008097 233 LPN---VDTYNILISSYCETGVLDSALDVFNDMKIDGIS-----------W------NFVTYDTLIRGLCSGGRIDDGLK 292 (577)
Q Consensus 233 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----------~------~~~~~~~ll~~~~~~g~~~~a~~ 292 (577)
+-- ..+|-.-...=.+..+++.|+++.+......-. + +...|+..++.--..|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 110 123333333334555666777766655431101 1 12334444555555677777777
Q ss_pred HHHHHHhccCCCCCCcccHHHHH---HHHHhcCCHHHHHHHHHHHhhcCCCce---ehHHHHHHhhh---cCCHHHHHHH
Q 008097 293 ILQLMEDSKEGSKGRISPYNSVL---YGLYRENQQDEALEYLKQMEKLFPRAV---DRSLKILGFCV---DGNVEDAKRC 363 (577)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~---~g~~~~A~~~ 363 (577)
+++.+.+.. +.|-..++ .-+-.+.-++++.+++++-..+.+-+. .|++.+.-+.+ ..+++.|..+
T Consensus 499 vYdriidLr------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 499 VYDRIIDLR------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHh------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 777777651 11211111 123345556777777777666543222 34554443332 2467888888
Q ss_pred HHHHHHcCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 364 FDQMIEEGGVPNVVIYDCL--IHAYCQEERVREASELMKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
|++.++ |.+|...-+--+ ...--..|....|+.++++... ++++... .|+..|.--...=-+.....+|++.+.
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 888887 555543222111 1222346778888888888654 3555432 466655433322223444566665555
Q ss_pred ccCCCCCCCccc---HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcchHHHHHH
Q 008097 440 GIGRGSLPGSGH---YSPLIKALCEKGGFQSASMLLVQMVGKGILP--DYLTWNSLLICLSQQTTWLLLLL 505 (577)
Q Consensus 440 ~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~ 505 (577)
+-|+... .--..+.-++.|..+.|..++.--.+- ..| +...|.+.=.--.+|||.+....
T Consensus 651 -----~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 651 -----SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred -----hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 3554332 334556677889999999998776532 334 45669988888899999876543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-09 Score=104.01 Aligned_cols=330 Identities=15% Similarity=0.145 Sum_probs=179.5
Q ss_pred HHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeH
Q 008097 71 KMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTF 150 (577)
Q Consensus 71 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 150 (577)
.+...|+.|+.+||.++|..|+..|+++.|- +|..|.-...+.+..+++.++......++.+.+. +|...+|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTY 86 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHH
Confidence 4455566666666666666666666666665 6666655555555556666666655555555443 4555566
Q ss_pred HHHHHHHHhcCChHH---HHHHHHHHH----hCC-----------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 151 SILICAYCKEENLVN---ALVLLEKSF----SFG-----------------FVPDVVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 151 ~~li~~~~~~~~~~~---A~~~~~~m~----~~g-----------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
+.|..+|...|+... +.+.+.... ..| .-||..+ ++....-.|.++.+.+++.
T Consensus 87 t~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHh
Confidence 666666666665432 222111111 111 1122211 1112222333333333332
Q ss_pred HHHHhhhcC-----------ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 008097 207 ESGEQGRLG-----------KVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYD 275 (577)
Q Consensus 207 ~~~~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 275 (577)
.+......+ ......++........-.|+..+|.+++..-..+|+.+.|..++.+|.+.|++.+..-|-
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 222211111 111122222222221114899999999999999999999999999999999998888777
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG 355 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 355 (577)
.++-+ .++..-+..+++.|... |+.|+..|+...+-.+.++|+...+.+. .+....+++-+..-+-.|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcc
Confidence 77755 78888888999999988 9999999999888888776663332211 122222222222222222
Q ss_pred -----CH-----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHH
Q 008097 356 -----NV-----EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG--HGYLP-IASTFNTVLSGLC 422 (577)
Q Consensus 356 -----~~-----~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p-~~~~~~~ll~~~~ 422 (577)
.+ .-....+.+..-.|+.....+|...+.. ..+|+.++..++...|.. ..+.| +...|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11 1111122222222444344555544433 337888888888888763 22333 2334666666555
Q ss_pred hc
Q 008097 423 RQ 424 (577)
Q Consensus 423 ~~ 424 (577)
+.
T Consensus 391 rr 392 (1088)
T KOG4318|consen 391 RR 392 (1088)
T ss_pred HH
Confidence 43
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-09 Score=109.35 Aligned_cols=197 Identities=12% Similarity=0.022 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
++++|...+++..+.++. +...+..+...+...|++++|...|+++.+..|+. ..+..+...+...|++++|...+
T Consensus 319 ~~~~A~~~~~~Al~ldP~---~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 319 AMIKAKEHAIKATELDHN---NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred HHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356666666666654322 44455555555666666666666666666655543 33444555566666666666666
Q ss_pred HHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccC
Q 008097 365 DQMIEEGGVPNV-VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIG 442 (577)
Q Consensus 365 ~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~ 442 (577)
++..+. .|+. ..+..++..+...|++++|+..+++..+.. .|+ ...+..+..++...|+.++|...+++...
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--- 469 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--- 469 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---
Confidence 666654 2321 222223334445566666666666665432 232 22344445555566666666666662222
Q ss_pred CCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 008097 443 RGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLTWNSLLICLS 495 (577)
Q Consensus 443 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 495 (577)
..| +....+.+...|...| ++|...++.+.+. .-.|...-|..++.+..
T Consensus 470 --~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~ 520 (553)
T PRK12370 470 --QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAH 520 (553)
T ss_pred --ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHH
Confidence 123 2223344444445555 3555555555432 12233334444444443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-08 Score=95.64 Aligned_cols=278 Identities=10% Similarity=0.028 Sum_probs=151.2
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP---NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKV 188 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 188 (577)
..-++.+.....+-+...+++.+..++++...+. +...+..-|.++...|+..+-+.+=.++.+.- +-.+.+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3445556666666677777777777777777653 34455556667777777776666666665542 3345667766
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008097 189 LELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN-VDTYNILISSYCETGVLDSALDVFNDMKIDGI 267 (577)
Q Consensus 189 l~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 267 (577)
.--|...|+..+|++.|... .. +.|. ...|-.....|+-.|..|+|+..+....+.=
T Consensus 319 g~YYl~i~k~seARry~SKa-------------------t~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~- 376 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKA-------------------TT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM- 376 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHH-------------------hh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-
Confidence 66666666666666664332 11 1111 2456666667777777777776666654420
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL----FPR--- 340 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~--- 340 (577)
+-...-+--+.--|.+.+++..|.+.|...... .+.|+...+-+.-.....+.+.+|..+|+..... .+.
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 101111112223356666777777777666654 2335566666665566666666666666655421 111
Q ss_pred -ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 341 -AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 341 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
..+++.+.++|.+++.+++|+..|++.+.. .+.|..++.++.-.|...|+++.|++.|.+... +.||..+...++
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL 529 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELL 529 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHH
Confidence 112334444555555555555555555443 233444555555555555555555555555443 344444444333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-09 Score=96.83 Aligned_cols=232 Identities=15% Similarity=0.081 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
+.|..+|.+.|.+.+|.+.|+..++. .|-+.||..|-..|.+..++..|..++..-.+. .+-++....-+.+.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 56788999999999999999998877 667788888999999999999999999998875 3336666667778888
Q ss_pred hcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
..++.++|.++++...+..|.. .....+...|.-.++++-|.+.+.++...|+. +...|+.+.-+|.-.++++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 9999999999999999977654 45556667888899999999999999999885 888999999999999999999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 399 MKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 399 ~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
|++....--.|+.. .|-.+.......|++.-|.+.|+-.+. ..| +.+.++.|.-.-.|.|++++|..+++..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~-----~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT-----SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc-----cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 99988655456543 577777777889999999999995454 234 6788999999999999999999999998
Q ss_pred HHCCCCCCH
Q 008097 476 VGKGILPDY 484 (577)
Q Consensus 476 ~~~~~~p~~ 484 (577)
.+ +.|+.
T Consensus 456 ~s--~~P~m 462 (478)
T KOG1129|consen 456 KS--VMPDM 462 (478)
T ss_pred hh--hCccc
Confidence 73 56664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-09 Score=96.04 Aligned_cols=200 Identities=11% Similarity=-0.011 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++......+ .+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP---NNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHH
Confidence 3445556666666777777777776665542 23345555566666666666666666666655421 1333444455
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..+...|++++|.+.+.+.....+ .+.....+..+...+...|++++|
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL--------------------------------YPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc--------------------------------cccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555554433211 111233455555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
.+.+.+..+.. +.+...+..+...+...|++++|..++++... . .+++...+..++..+...|+.++|..+.+.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQ--T--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666665532 12344555566666666666666666663333 1 1224455556666666666666666666655
Q ss_pred H
Q 008097 476 V 476 (577)
Q Consensus 476 ~ 476 (577)
.
T Consensus 230 ~ 230 (234)
T TIGR02521 230 Q 230 (234)
T ss_pred H
Confidence 4
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.4e-07 Score=91.00 Aligned_cols=380 Identities=16% Similarity=0.090 Sum_probs=217.1
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH
Q 008097 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT 186 (577)
Q Consensus 110 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 186 (577)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556777888888888888998888888888764 345678888888888888888888888765544335433333
Q ss_pred -HHHHHHH-hcCCHhHHHHHHHHHHHh-------------------------------hhcCChhHHHHHHHHHHHcCC-
Q 008097 187 -KVLELLC-SVGRVMDAVEILEESGEQ-------------------------------GRLGKVKGGCRFLKEMERKGC- 232 (577)
Q Consensus 187 -~ll~~~~-~~g~~~~a~~~~~~~~~~-------------------------------~~~g~~~~a~~~~~~~~~~~~- 232 (577)
..-+.|. +.+..+++..+-..++.. .+.-...++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333333 456677777766666553 111122344555555554432
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
.|++..|- ---|+..++.+.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- + .|.....
T Consensus 477 dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~--~N~~l~~ 551 (799)
T KOG4162|consen 477 DPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G--DNHVLMD 551 (799)
T ss_pred CchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h--hhhhhch
Confidence 23333332 23456677788888888887776556677777777777777788888888777665431 1 1111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh------HHHHHH----hhhcCCHHHHHHHHHH----------------
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDR------SLKILG----FCVDGNVEDAKRCFDQ---------------- 366 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~l~~~----~~~~g~~~~A~~~~~~---------------- 366 (577)
.-+..-..-++.++++.....+.....+.... ..+... ....++..+|.+....
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~ 631 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSEL 631 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccc
Confidence 11111122344444443333222100000000 000000 0000001111110000
Q ss_pred -HHHcCCC--CC------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 367 -MIEEGGV--PN------VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 367 -~~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
+...-.. |+ ...|......+.+.+..++|...+.+.... .| .+..|.-....+...|..++|.+.|..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0100011 22 234667777788888888888777777653 33 444555555666777888888888874
Q ss_pred hhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCC-HHHHHHHHHHHHhcchHHHH
Q 008097 437 DMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASM--LLVQMVGKGILPD-YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 437 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~ 503 (577)
.+. +.| ++.....+..++.+.|+..-|.. ++.++.+ +.|+ ...|-.|-..+.+.|+.+.+
T Consensus 710 Al~-----ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 710 ALA-----LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHh-----cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHH
Confidence 444 667 56677788888888887766666 7887774 4554 47788888888888887644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-09 Score=95.66 Aligned_cols=188 Identities=13% Similarity=0.077 Sum_probs=136.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.+..+...+...|++++|.+.+++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...+..+...|..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 3445555555666666666666665554443 2334455566667777777777777777653 3456678888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChh
Q 008097 389 EERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 466 (577)
.|++++|.+.+++..+....| ....+..+...+...|++++|...+++.+. ..| +...+..+...+...|+++
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-----IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999998643223 345677778889999999999999996555 344 5678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHHH
Q 008097 467 SASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLLL 504 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 504 (577)
+|...+++..+. ..++...+..+...+...|+.+...
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999875 3445566777777777778776543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-06 Score=85.07 Aligned_cols=438 Identities=11% Similarity=0.046 Sum_probs=251.8
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
.||-..++..-+--+...+.+...++..+.+++..+......----+..++-.+-++|..... .-.+ +-..+.+.|..
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr-~glr-~d~~S~vCwHv 80 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVR-LGLR-NDLKSHVCWHV 80 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHH-HHhc-cCcccchhHHH
Confidence 344444444333344456788888888888876433332221111122222226777777766 3222 22335677887
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCCh
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 163 (577)
+.-.+....++++|.+.|....+.+. .|...+.-+.-.-++.|+++-....-.+..+ .....|..+..++--.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777778899999999999988763 3677777776667777888776666555543 4567899999999999999
Q ss_pred HHHHHHHHHHHhCC-CCCCHhhHHHHHHH------HHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 164 VNALVLLEKSFSFG-FVPDVVTITKVLEL------LCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 164 ~~A~~~~~~m~~~g-~~~~~~~~~~ll~~------~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
..|..+.++..+.. -.|+...+.-.... ....|.++.|.+.+. ..... +.-..
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~-------------------~~e~~-i~Dkl 219 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL-------------------DNEKQ-IVDKL 219 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH-------------------hhhhH-HHHHH
Confidence 99999998887654 24555555443322 233455454444332 22211 00011
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHH-HHHcCCChHHHH-HHHHHHHhccCCCCCCcccHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIR-GLCSGGRIDDGL-KILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
..-..-...+.+.+++++|..++..++.. .||..-|.-.+. ++.+.-+.-++. .+|....+.-+.. ..-..+
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~----e~p~Rl 293 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH----ECPRRL 293 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc----ccchhc
Confidence 12233445677888888888888888876 566665554443 333333333333 5565554431111 000000
Q ss_pred HHHHHhcCCHHHH-HHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc--C------------CCCCHhhH
Q 008097 315 LYGLYRENQQDEA-LEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE--G------------GVPNVVIY 379 (577)
Q Consensus 315 i~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~------------~~p~~~~~ 379 (577)
--.......+.+. -+++....+. .-+..+..+...|-.....+--.++...+... | -+|....|
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~K-g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSK-GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhc-CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 0011111122222 2222222221 00111122222211111111111111111110 1 25777766
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 380 D--CLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 380 ~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
+ .++..|-+.|+++.|+.+++..+++ .|+.+ .|..=.+.+.+.|+.++|..+++ ..++.+ .||...-.--+
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~-ea~elD---~aDR~INsKcA 446 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLD-EAQELD---TADRAINSKCA 446 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcc---chhHHHHHHHH
Confidence 6 5667888999999999999999974 57655 46666789999999999999999 555222 45555555666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCC
Q 008097 457 KALCEKGGFQSASMLLVQMVGKGI 480 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~~~~ 480 (577)
.-..|+++.++|.++.-...+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 778899999999999999987765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-08 Score=105.67 Aligned_cols=170 Identities=16% Similarity=-0.023 Sum_probs=104.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
.+++++|...++++.+..|+. ..+..+...+...|++++|...|++..+.+ +.+...|..+...|...|++++|+..+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345677777777777766643 345555566667777777777777777752 224556677777777777777777777
Q ss_pred HHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 400 KEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 400 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++..+. .|+.. .+..++..+...|++++|...+++.+. . ..| ++..+..+..+|...|++++|...++++..
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~--~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRS--Q--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH--h--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 777763 35432 223334445566777777777774333 1 124 344466667777777777777777777652
Q ss_pred CCCCCCH-HHHHHHHHHHHhcch
Q 008097 478 KGILPDY-LTWNSLLICLSQQTT 499 (577)
Q Consensus 478 ~~~~p~~-~~~~~ll~~~~~~~~ 499 (577)
..|+. ..++.+...+...|+
T Consensus 470 --~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 470 --QEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred --ccchhHHHHHHHHHHHhccHH
Confidence 34443 334444444455554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-06 Score=88.97 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 285 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
+.++.|.+.-++.. .+..|..+..+-.+.|...+|.+-|-+. .|+..|.-++....+.|.+++-.+.+
T Consensus 1089 ~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44555555444332 3457888888888888888888776544 35667888899999999999999988
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCC
Q 008097 365 DQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRG 444 (577)
Q Consensus 365 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~ 444 (577)
....++...|.+. +.+|-+|++.++..+..+++ .-||......+.+-|...|.++.|.-+|. .
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-~------- 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS-N------- 1219 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH-H-------
Confidence 8887765555544 57888999999887765543 34888888899999999999999988888 3
Q ss_pred CCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHH
Q 008097 445 SLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 445 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 502 (577)
+..|..|...+...|.++.|.+.-++.- +..+|..+--+|...+.+.+
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhH
Confidence 3358888889999999998888777663 56789988888876666544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-07 Score=82.00 Aligned_cols=407 Identities=11% Similarity=0.059 Sum_probs=196.4
Q ss_pred HhcCHHHHHHHHHHHHhhcCCCCCHhhHHH-HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHH
Q 008097 57 VKEDIDLARAFYRKKMMASGVQGDDYTYAI-LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRA 135 (577)
Q Consensus 57 ~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 135 (577)
++.++..|+.+++ .-...+-+ .....+. +..++...|++++|...+..+.... .++...+-.|.-.+.-.|.+.+|
T Consensus 34 s~rDytGAislLe-fk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 34 SNRDYTGAISLLE-FKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred hcccchhHHHHHH-Hhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 3348999998887 32221111 1112222 2344558999999999999887753 55667777777777777999999
Q ss_pred HHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----
Q 008097 136 RSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---- 211 (577)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 211 (577)
..+-.+.++ ++..-..|...--+.++-++-..+.+.+... ..--.++.......-.+.+|.+++..++..
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 998777653 2222333445555667777766666655421 122334444444445677777777766554
Q ss_pred -----------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh--cCChhHHHHHHHHHHHCCC-----------
Q 008097 212 -----------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCE--TGVLDSALDVFNDMKIDGI----------- 267 (577)
Q Consensus 212 -----------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~----------- 267 (577)
.+..-++-+.++++-..+. ++-+....|.......+ +|+. |.+-.+.+.+.+-
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhcccccchhHHHHHH
Confidence 3333444444444433332 11122222322222222 1111 1111111111000
Q ss_pred ---------------CcC-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH--HHhcCC--
Q 008097 268 ---------------SWN-----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG--LYRENQ-- 323 (577)
Q Consensus 268 ---------------~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~-- 323 (577)
-|. +..-..++-.|.+.+++.+|..+.+.+.- +..+.-++.+ ++..|+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--------ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--------TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--------CChHHHHHHHHHHHHhhhhc
Confidence 000 00111122334555555555555443321 1112222222 112222
Q ss_pred -----HHHHHHHHHHHhhc--CCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 324 -----QDEALEYLKQMEKL--FPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 324 -----~~~A~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..-|.+.|+-.-+. .-| ....-.+...+.-..++++.+-.++.+...-...|...+| +.++++..|.+.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHH
Confidence 12222222222111 011 1112233333444445555555555555543333333333 55666777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhcccCCCCCC-Cc-ccHHHHHHHHHHcCChhHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVL-SGLCRQGNVGTALKLVEEDMRGIGRGSLP-GS-GHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~-~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
.++|-+.....++ |..+|.+++ +.|.+.|.++-|+.++- .+. .| +. .....+.+-|.+++.+=-|.+.|
T Consensus 413 Eelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l-k~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 413 EELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMML-KTN------TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred HHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHH-hcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777665543332 444554443 44467777777777665 333 22 22 22334445566677766666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 008097 473 VQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 473 ~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
+.+. -..|++.-|..--+||
T Consensus 485 d~lE--~lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 485 DELE--ILDPTPENWEGKRGAC 504 (557)
T ss_pred hHHH--ccCCCccccCCccchH
Confidence 6665 2456666665555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-06 Score=77.47 Aligned_cols=193 Identities=12% Similarity=0.049 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
|..-.......++++.|+.+-.+.++.. +.+...|..-...+...++.++|.-.|+..+... +.+..+|.-|+.+|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHH
Confidence 3333333444455555555555554332 1122233222334445555555555555554431 12444555555555
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhc-CCHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLI-HAYCQE-ERVREAS 396 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~-g~~~~A~ 396 (577)
...|.+.+|.-.-....+. .+.+..+.+.+. ..+.-. .--++|.
T Consensus 379 LA~~~~kEA~~~An~~~~~----------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRL----------------------------------FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred HhhchHHHHHHHHHHHHHH----------------------------------hhcchhhhhhhcceeeccCchhHHHHH
Confidence 5555555555444433332 222333333332 222111 1125566
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 397 ELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+++++-.. +.|+.. ..+.+...|...|..+.+..++++.+. ..||....+.|.+.+...+.+++|.+.|...
T Consensus 425 kf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 425 KFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 66666554 445543 345555666666666666666665555 4566666666666666666666666666666
Q ss_pred H
Q 008097 476 V 476 (577)
Q Consensus 476 ~ 476 (577)
.
T Consensus 498 L 498 (564)
T KOG1174|consen 498 L 498 (564)
T ss_pred H
Confidence 5
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.9e-09 Score=100.90 Aligned_cols=240 Identities=19% Similarity=0.172 Sum_probs=159.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhccC---C--
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKID-----G-ISWNFVTY-DTLIRGLCSGGRIDDGLKILQLMEDSKE---G-- 303 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~-- 303 (577)
..+...+...|...|+++.|..+++...+. | ..|...+. +.+...|...+++++|..+|+.+..... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556888999999999999999987653 2 12333333 3466788889999999999988765311 1
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCCce-ehHHHHHHhhhcCCHHHHHHHHHHHHHc---C
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL--------FPRAV-DRSLKILGFCVDGNVEDAKRCFDQMIEE---G 371 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 371 (577)
.+.-..+++.|...|.+.|++++|..+++++.++ .|... .++.+...|+..+.+++|..++.+..+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112245677777899999999999888887653 11111 2345566677888888888887766553 1
Q ss_pred CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 008097 372 GVPN----VVIYDCLIHAYCQEERVREASELMKEMTGH----G--YLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 372 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
+.++ ..+++.|...|...|++++|.+++++.+.. + ..+. ...++.+..+|.+.+..++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~- 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD- 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 1222 346788888888888888888888877631 1 1222 33567777788888888888777773222
Q ss_pred cCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 441 IGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 441 ~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
+-.-+.| ...+|..|..+|.+.|++++|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1112223 23567778888888888888888777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-07 Score=93.31 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=166.0
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----------CCce-eHHHHHHHHHhcCChHHHHHHHHHHHhC----
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----------PNDV-TFSILICAYCKEENLVNALVLLEKSFSF---- 176 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 176 (577)
.+.-..+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++.+|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 333345666688899999999999999887653 2222 2234566788899999999999998653
Q ss_pred -CC-CC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCh
Q 008097 177 -GF-VP-DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNV-DTYNILISSYCETGVL 252 (577)
Q Consensus 177 -g~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~ 252 (577)
|- .| -..+++.|..+|.+.|++++|...++.+ .++++..... ..|.+ ..++.+...+...+++
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A------------l~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~ 341 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA------------LEIYEKLLGA-SHPEVAAQLSELAAILQSMNEY 341 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH------------HHHHHHhhcc-ChHHHHHHHHHHHHHHHHhcch
Confidence 21 12 2457778888999999999999997664 4455552221 11222 2356677788889999
Q ss_pred hHHHHHHHHHHHC---CCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CC--CC-CcccHHHHHHHHHh
Q 008097 253 DSALDVFNDMKID---GISWN----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GS--KG-RISPYNSVLYGLYR 320 (577)
Q Consensus 253 ~~A~~~~~~m~~~---g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~--~~-~~~~~~~li~~~~~ 320 (577)
++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|+.+..... +. .+ .-..++.|...|.+
T Consensus 342 Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 342 EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 9999999876542 11222 35677888888888888888888887765421 11 11 12345666666777
Q ss_pred cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMK 400 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 400 (577)
.+.+.+|.++|.+...+ . .....+.+-...+|..|...|.+.|+++.|+++.+
T Consensus 422 ~k~~~~a~~l~~~~~~i--------------------------~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 422 LKKYEEAEQLFEEAKDI--------------------------M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred hcccchHHHHHHHHHHH--------------------------H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 77777776666554331 1 11111122234578888888888888888888877
Q ss_pred HHH
Q 008097 401 EMT 403 (577)
Q Consensus 401 ~m~ 403 (577)
...
T Consensus 475 ~~~ 477 (508)
T KOG1840|consen 475 KVL 477 (508)
T ss_pred HHH
Confidence 665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-05 Score=78.74 Aligned_cols=415 Identities=14% Similarity=0.105 Sum_probs=199.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|-...++....-.+...|+-++|........+.++ .+.+.|..+--.+... ++++|+..|. .....+ +-|...|.-
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~-nAl~~~-~dN~qilrD 114 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYR-NALKIE-KDNLQILRD 114 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHH-HHHhcC-CCcHHHHHH
Confidence 33344444444455566777777777777665432 4556665544444444 7778887777 333322 123444444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-----CCceeHHHHH------H
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-----PNDVTFSILI------C 155 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li------~ 155 (577)
+.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..+.+...+ ++...+.-.. .
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 4444455666666666655555542 22444566666666666666666666655442 3333222211 2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHHHh---------------hhcCChhH
Q 008097 156 AYCKEENLVNALVLLEKSFSFGFVPDVVTI-TKVLELLCSVGRVMDAVEILEESGEQ---------------GRLGKVKG 219 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~---------------~~~g~~~~ 219 (577)
...++|..++|++.+..-... ..|-..+ -+-...+.+.+++++|..++..++.. .+-.+..+
T Consensus 194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 334555566665555433211 1111111 12223344455555555544443332 00000011
Q ss_pred HH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 220 GC-RFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 220 a~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
+. .+|....+. ++.....--.=++......-.+..-.++..+.+.|+++- +..+...|-.....+-..++...+.
T Consensus 272 ~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 272 ALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHH
Confidence 11 112222211 000000000000000011112333344455555555532 2223332322111111111111111
Q ss_pred hccCC------------CCCCcccHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHH
Q 008097 299 DSKEG------------SKGRISPYN--SVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 299 ~~~~~------------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~ 363 (577)
..-.+ .+|....|+ .++..+-..|+++.|..+++......|+.+. |.+-...+...|+++.|...
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11001 134444444 3456677788888888888888877676544 34445677788888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHH
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST--------FNTV--LSGLCRQGNVGTALKL 433 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--------~~~l--l~~~~~~g~~~~a~~~ 433 (577)
+++..+.+ .||...-.--..-..+..+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-
T Consensus 428 l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 428 LDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred HHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 88887752 24544433444555667888888888888777664 2221 1111 2356677777666665
Q ss_pred HH
Q 008097 434 VE 435 (577)
Q Consensus 434 ~~ 435 (577)
|.
T Consensus 505 fh 506 (700)
T KOG1156|consen 505 FH 506 (700)
T ss_pred Hh
Confidence 55
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-07 Score=89.76 Aligned_cols=126 Identities=16% Similarity=0.002 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.++. +...|..+...
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~ 141 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 35555555666666666666666665542 224555666666666666666666666666554222 33445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+...|++++|.+.|+...+..|+..........+...++.++|...|.+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55566666666666665555444321111111122334455555555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-08 Score=85.91 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhc
Q 008097 119 YNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTIT-KVLELLCSV 195 (577)
Q Consensus 119 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~ 195 (577)
-+.+.+.|.+.|.+.+|.+.|+...+ |-+.||-.|-+.|.+-.+++.|+.+|.+-++. .|-.+||. .+...+-..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 36778888899999999988887653 67788888889999999999999998887653 45555553 344555555
Q ss_pred CCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHH
Q 008097 196 GRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYD 275 (577)
Q Consensus 196 g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 275 (577)
++.++|.++++ ...+.. +.++.....+...|.-.++++-|+..|+++++.|+. +...|.
T Consensus 304 ~~~~~a~~lYk-------------------~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~ 362 (478)
T KOG1129|consen 304 EQQEDALQLYK-------------------LVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFC 362 (478)
T ss_pred HhHHHHHHHHH-------------------HHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHh
Confidence 66666666554 444432 225666667777788888889999999988888865 777788
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhc
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVD 354 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 354 (577)
.+.-+|.-.+++|-+...|.+....-........+|-.+.......|++.-|.+.|+-.....|+ ...++.+...-.+.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 88888888888888888888776542222223356777777788888888888888888776554 45677777777788
Q ss_pred CCHHHHHHHHHHHHHc
Q 008097 355 GNVEDAKRCFDQMIEE 370 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~ 370 (577)
|+++.|..+++.....
T Consensus 443 G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 443 GDILGARSLLNAAKSV 458 (478)
T ss_pred CchHHHHHHHHHhhhh
Confidence 9999999998888763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-06 Score=86.96 Aligned_cols=196 Identities=10% Similarity=0.128 Sum_probs=140.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
|.+......+.+|+.+++.++... .-.--|..+.+.|+..|+++.|.++|.+.. .++-.|.+|.++|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhccc
Confidence 445556778888888888887652 223446777888999999999999887542 3566788899999
Q ss_pred CHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
+|++|.++-.+..........|.+-..-.-+.|++.+|.++|-.+.. |+. -|..|-++|..+..+++.++-
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 99999888776655333344454545556678888888888766643 553 477888999988888887765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 403 TGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 403 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
.-. .-..|...+..-+-..|+...|..-|- .. .-|..-+++|-..+.|++|.++-+.-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl-ea-----------~d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFL-EA-----------GDFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHH-hh-----------hhHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 321 113366667777888899999888776 22 23677888899999999988876653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.6e-06 Score=79.25 Aligned_cols=433 Identities=14% Similarity=0.122 Sum_probs=216.2
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHH--HHHHHh--c-CHHHHHHHHHHHHhhcCCCCC
Q 008097 6 QSPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSI--LDVLVK--E-DIDLARAFYRKKMMASGVQGD 80 (577)
Q Consensus 6 g~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~--~-~~~~a~~~~~~~m~~~~~~~~ 80 (577)
+.|.+..++..-+-+..+.+.+++|+.+.+.-. -..+.+.. =.+|+. . ..++|+..+. |..++
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~------~~~~~ 108 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKLDEALKTLK------GLDRL 108 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccHHHHHHHHh------ccccc
Confidence 457788899999999999999999996555432 11222322 445554 2 7888888776 23333
Q ss_pred -HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHH---
Q 008097 81 -DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKP-NSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILIC--- 155 (577)
Q Consensus 81 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~--- 155 (577)
..+...-.+.|.+.+++++|..+|+.+.+++.+. +...-..++.. +-.-.+. +.+..++....+|..+.+
T Consensus 109 ~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac 183 (652)
T KOG2376|consen 109 DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTAC 183 (652)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHH
Confidence 3356666677889999999999999998876431 11111222211 1111222 455555544556655543
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-------CCC--CHhh-----HHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHH
Q 008097 156 AYCKEENLVNALVLLEKSFSFG-------FVP--DVVT-----ITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGC 221 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g-------~~~--~~~~-----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~ 221 (577)
.++..|++.+|+++++...+.+ -.- +... -..+.-.+...|+..+|..++..+++.-.......|.
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av 263 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAV 263 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHH
Confidence 4567899999999998883321 011 1111 1112233455677777777766665541111111111
Q ss_pred HHHHHHHH-cCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHH
Q 008097 222 RFLKEMER-KGCLPNVDT-YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY-DTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 222 ~~~~~~~~-~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
-. ..+.. .+.. +... .+..+.--......+..+.-|..-.. ..+.. +.++..| .+..+.+.++-..+.
T Consensus 264 ~~-NNLva~~~d~-~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 264 AV-NNLVALSKDQ-NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred Hh-cchhhhcccc-ccCchHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 00 00000 0000 0000 00000000000111222222221111 11222 2233333 234444444433332
Q ss_pred hccCCCCCCcccHHHHHHHHH--hcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCHHHHHHHHH--------H
Q 008097 299 DSKEGSKGRISPYNSVLYGLY--RENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNVEDAKRCFD--------Q 366 (577)
Q Consensus 299 ~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~--------~ 366 (577)
+..|.. .+..++..+. +...+.++.+++....+..|... ...+.+......|+++.|.+++. .
T Consensus 335 ----~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 ----GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred ----ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 222222 2333332221 22245666666666666555442 23333444556777777777777 4
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHhhcc
Q 008097 367 MIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVL----SGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 367 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
+.+.+..| .+...++..|.+.++.+.|..++.+.+.. .-.+......+++ ..-.+.|.-++|...++ .+.
T Consensus 410 ~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le-el~- 485 (652)
T KOG2376|consen 410 ILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE-ELV- 485 (652)
T ss_pred hhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH-HHH-
Confidence 54443333 33445556666666655666666555421 0112222222222 22245677777777777 443
Q ss_pred cCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 441 IGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 441 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
. -..+|..+..++|.+|++. +++.|..+-+.++
T Consensus 486 -k-~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 486 -K-FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred -H-hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 1 1234777777777777776 5677777766653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-06 Score=85.91 Aligned_cols=204 Identities=13% Similarity=0.085 Sum_probs=141.5
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYA 85 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~ 85 (577)
+.-++.+|..|.-+...+|+++.+.+.|++....- -.....|+.+-..|+.. .-..|+.+++..+......+|...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45688899999999999999999999999986432 23567788888888887 77889999885444433233444444
Q ss_pred HHHHHHH-hcCCHhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHHhc-----------CCHhHHHHHHHhccCCC---
Q 008097 86 ILMKGLC-LTNRVGDGFKLLHVMKSR--GV--KPNSVIYNTLIHSLCKN-----------GKVGRARSLMSDMEEPN--- 146 (577)
Q Consensus 86 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~--- 146 (577)
..-+.|. +.+.+++++..-.+++.. |. ......|..+.-+|... ....++.+.+++..+.|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445555 567788888777777662 11 11233344444444322 11345667777775433
Q ss_pred ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 147 DVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 147 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
...-..+.--|+..++.+.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 22222333457788999999999999999877788999999999999999999999998776544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-07 Score=89.59 Aligned_cols=125 Identities=14% Similarity=0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH-HHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS-LKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~ 353 (577)
..+...|...|++++|.+.++......|. .+..|..-...+-+.|++.+|.+.++..++..+...-.| -....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt---~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPT---LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 33445555566666666666655554211 233444455555556666666666665555443332222 23334445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh------hH--HHHHHHHHhcCCHHHHHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVV------IY--DCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m 402 (577)
+|++++|.+++....+.+..|-.. .| .-...+|.+.|++..|++.|...
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666665555555443222111 12 23345566666666665555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-07 Score=86.85 Aligned_cols=230 Identities=13% Similarity=0.012 Sum_probs=160.7
Q ss_pred cCChhHHHHHHHHHHHCC-CCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 249 TGVLDSALDVFNDMKIDG-ISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
.+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|+...+.++. +...|+.+...+...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHH
Confidence 456778888888887542 2222 355777788899999999999999999886433 6788999999999999999
Q ss_pred HHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...|++..+..|+. ..+..+...+...|++++|.+.|++..+. .|+..........+...++.++|++.|.+...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 9999999999988864 56677788889999999999999999985 34432222222234457789999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCC--CCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008097 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGR--GSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 405 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~--~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 481 (577)
. ..|+...+ .+ .....|+..++ ..++........ .+.| ..+.|..+...+...|++++|...|++..+.+ .
T Consensus 194 ~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~ 267 (296)
T PRK11189 194 K-LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-V 267 (296)
T ss_pred h-CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 3 23443222 22 22335555444 244312210001 1122 34679999999999999999999999998542 3
Q ss_pred CCHHHHHH
Q 008097 482 PDYLTWNS 489 (577)
Q Consensus 482 p~~~~~~~ 489 (577)
||.+-+..
T Consensus 268 ~~~~e~~~ 275 (296)
T PRK11189 268 YNFVEHRY 275 (296)
T ss_pred chHHHHHH
Confidence 45544443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-05 Score=74.25 Aligned_cols=255 Identities=18% Similarity=0.095 Sum_probs=184.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
++-|+.....+...+...|+.++|...|++.+.. .|+..+ .....-.+.+.|+.+.-..+...+.... +.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhh
Confidence 4447778889999999999999999999998754 333222 1111223456788888777777766541 113444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
|-.-.......++++.|+.+-++..+..|+.+. +-.-...+...|+.++|.-.|+..+.. -+-+..+|.-++.+|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhh
Confidence 555556667788999999999999888776554 333345667889999999999999874 224688999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChh
Q 008097 390 ERVREASELMKEMTGHGYLPIASTFNTVL-SGLC-RQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 466 (577)
|+..||.-+-+...+. +..+..+...+. ..|. ...--++|.+++++.++ +.|+ ....+.+...+.+.|+.+
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-----~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-----INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-----cCCccHHHHHHHHHHHHhhCccc
Confidence 9999999887776542 333455554442 3332 23335889999997666 6774 445677888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 467 SASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 467 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
++..++++.. -..||....+.|-.-++..+..
T Consensus 456 D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 456 DIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEP 487 (564)
T ss_pred hHHHHHHHHH--hhccccHHHHHHHHHHHHhhhH
Confidence 9999999988 3678988888777777655543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-06 Score=87.51 Aligned_cols=290 Identities=16% Similarity=0.086 Sum_probs=170.4
Q ss_pred HHHHhcCCHhHHHHHHHhccC--CCceeH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHh
Q 008097 124 HSLCKNGKVGRARSLMSDMEE--PNDVTF-SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLC-SVGRVM 199 (577)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-~~g~~~ 199 (577)
..+...|++++|++.++.-.. .|..+| ......+.+.|+.++|...|..+.+.+ |+...|...+..+. -.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 345666777777777766443 343333 344566677777777777777777654 44444443333332 111000
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVL-DSALDVFNDMKIDGISWNFVTYDTLI 278 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~ll 278 (577)
..+.+.-..+++++...- |.....-.+.-.+..-..+ ..+...+..+...|+| .+|+.+-
T Consensus 90 --------------~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk 150 (517)
T PF12569_consen 90 --------------DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLK 150 (517)
T ss_pred --------------cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 011122223344443332 2222221121112221222 2344555666777766 3455555
Q ss_pred HHHHcCCChHHHHHHHHHHHhcc------------CCCCCCcccH--HHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSK------------EGSKGRISPY--NSVLYGLYRENQQDEALEYLKQMEKLFPRAVD- 343 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 343 (577)
..|....+.+-..+++......- ...+|....| .-+...|...|++++|+++.++..+..|+.+.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56665555555555555543320 0122333334 44566678889999999999999888887544
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--------HHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS--------TFN 415 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~ 415 (577)
|..-...|-+.|++.+|.+.++....... -|...-+-.+..+.+.|+.++|.+++....+.+..|-.. -..
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 55567788889999999999998888643 366777777788888999999999988888766544221 124
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~ 435 (577)
....+|.+.|++..|++.|.
T Consensus 310 e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 310 ECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 45667888888888887776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-06 Score=87.59 Aligned_cols=197 Identities=10% Similarity=-0.009 Sum_probs=121.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+|..|...|...-+...|.+.|+...+.+. -+...+..+...|+.. +++.|..+.-..-.......-...|...--.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 577777777776677788888888866432 3566777788888887 88888776431111111111112233333345
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHH---HHHHHhcCChHHHHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSIL---ICAYCKEENLVNALV 168 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~ 168 (577)
.+.++...+..-|+...+..+ .|...|..+..+|.++|++..|.++|++...-++.+|-.. ...-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 577788888888888877653 3778889999999999999999999988876554443322 223456788888888
Q ss_pred HHHHHHhC------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 169 LLEKSFSF------GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 169 ~~~~m~~~------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
.+...... +..--..++..+...+...|-...|..+++..++.
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 77665432 11222344444444444445444444444444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.4e-07 Score=75.35 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=122.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~ 353 (577)
.-+.-.|...|+...|..-+++..+.++. +..+|..+...|.+.|+.+.|.+.|++..+..|+. ...|.....+|.
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 33455566667777777666666665322 44556666666666677777776666666665543 445556666667
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
.|.+++|...|++.... ...--..+|..+.-+-.+.|+.+.|.+.|++..+. .| ...+...+.......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777664 11112356777777777777777777777777764 23 3345666677777777777777
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+++ ... .+..++.++.-..|..--+.|+-+.|.+.=..+.
T Consensus 194 ~~~~-~~~---~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLE-RYQ---QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHH-HHH---hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777 443 2223677777777777777777776666555554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-06 Score=74.69 Aligned_cols=194 Identities=11% Similarity=-0.036 Sum_probs=155.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
..-|.-+|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|+......++ +-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~---~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN---NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC---ccchhhhhhHHH
Confidence 4456678899999999999999988773 445678888888999999999999999998876444 667788888888
Q ss_pred HhcCCHHHHHHHHHHHhhc---CCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 319 YRENQQDEALEYLKQMEKL---FPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
|..|++++|...|++.... ..-..+|..+.....+.|+.+.|...|++.++... -...+.-.+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998773 22345677777777889999999999999988632 2355677788888899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 396 SELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..+++.....+. ++..+....++.-.+.|+.+.+-++=. .+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~-qL~ 234 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA-QLQ 234 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH-HHH
Confidence 999999887664 888888888888889999988877765 444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-05 Score=71.37 Aligned_cols=184 Identities=11% Similarity=0.099 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+....-.+-..+...|+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs---~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS---QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHhhhhHH
Confidence 344444444554444444331 2344444444444445555555544444433321 112333333334444445555
Q ss_pred HHHHHHHHHhhcCCCceehHHH-------------HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh---HHHHHHHHHhc
Q 008097 326 EALEYLKQMEKLFPRAVDRSLK-------------ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI---YDCLIHAYCQE 389 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~li~~~~~~ 389 (577)
.++...++-.+..|+....... +......+++.++.+..+...+....-..+. +..+-.+|...
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 5544444444444443221110 0112233444444444444444321111111 22233344444
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 390 ERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
|++.+|++.-.+..+ +.|| ..++.--..+|.-...++.|+.-|+
T Consensus 321 ~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred CCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555555555555544 3343 3344444445555555555555555
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.8e-06 Score=81.65 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce-----ehHHH
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV-----DRSLK 347 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~l 347 (577)
....+...+...|++++|.+.++...+..+. +...+..+...+...|++++|..++++.....|... .|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3344455666677777777777777665222 445566666677777777777777777666443211 12345
Q ss_pred HHHhhhcCCHHHHHHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...+...|++++|..+|++...
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 5566677777777777776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-07 Score=85.54 Aligned_cols=246 Identities=15% Similarity=0.121 Sum_probs=134.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChh
Q 008097 158 CKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVD 237 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 237 (577)
.-.|++..++.-.+ ........+......+.+++...|+.+.+.. ++... -.|...
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----------------------ei~~~-~~~~l~ 67 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----------------------EIKKS-SSPELQ 67 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----------------------HS-TT-SSCCCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----------------------HhccC-CChhHH
Confidence 34566666665444 2111111223344455566666666554322 22222 244544
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
....+...+...++-+.++.-+++....... .+..........+...|++++|.+++... .+.......+.
T Consensus 68 av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vq 139 (290)
T PF04733_consen 68 AVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQ 139 (290)
T ss_dssp HHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHH
Confidence 4444433333334445555555444433322 23333333334566678888887766532 14445556677
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHH----hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVDRSLKILG----FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.|.+.++++.|.+.++.|.+...|... ..+..+ +.-.+.+.+|..+|+++... ..+++.+.|.+..++...|++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCH
Confidence 777888888888888777776544332 222222 22234678888888887654 556777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhc
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV-GTALKLVEEDMR 439 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~m~ 439 (577)
++|.+++.+....+ +-|..|+..++....+.|+. +.+.+++. .++
T Consensus 218 ~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~-qL~ 263 (290)
T PF04733_consen 218 EEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS-QLK 263 (290)
T ss_dssp HHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH-HCH
T ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH-HHH
Confidence 88888888876543 22555666777777777777 55667777 555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-05 Score=78.00 Aligned_cols=167 Identities=14% Similarity=0.104 Sum_probs=83.3
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhc
Q 008097 16 TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLT 94 (577)
Q Consensus 16 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 94 (577)
+.|+.|.+.|.+..|.+....-.. ...+......+..++.+. -++.|-++|+ .+.. +...+.+|.+-
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfe-ki~d---------~dkale~fkkg 687 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFE-KIHD---------FDKALECFKKG 687 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHH-HhhC---------HHHHHHHHHcc
Confidence 456677777777666654322211 234666667777777777 7777777777 3321 22334444444
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIY-NTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
.-+.+|.++-+.. ++..++.. ......+...|+++.|..-|-+.. ..-..|.+......|.+|+.+++.+
T Consensus 688 daf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildni 758 (1636)
T KOG3616|consen 688 DAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNI 758 (1636)
T ss_pred cHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHh
Confidence 4444554443322 11111111 112223334455555555443321 1111233444556666666666666
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
..... -..-|..+..-|+..|+++.|.++|
T Consensus 759 qdqk~--~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 759 QDQKT--ASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred hhhcc--ccccchHHHHHhccchhHHHHHHHH
Confidence 54322 1233455556666666666666665
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00053 Score=70.90 Aligned_cols=346 Identities=13% Similarity=0.157 Sum_probs=239.7
Q ss_pred HHHHHHHhCCCC--CCcchHHHHHHHHHhcCCHhHHHHHHHhcc-CCCcee-----HHHHHHHHHhcCChHHHHHHHHHH
Q 008097 102 KLLHVMKSRGVK--PNSVIYNTLIHSLCKNGKVGRARSLMSDME-EPNDVT-----FSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 102 ~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
++.++.++.+++ .|+.-.+..+.++...+-..+-.++++++. ++++.+ -|.||-...+ -+...+.+..+++
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHh
Confidence 344555554432 245556677888888888888888888876 333332 3334433333 3445566666665
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh--------hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 008097 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ--------GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISS 245 (577)
Q Consensus 174 ~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 245 (577)
-... .|+ +...+...+-+++|..+|+..-.. ..-++++.|.+.-+... ....|+.+..+
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKA 1113 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHH
Confidence 4332 222 334455566667777776653222 23345555544433332 45689999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
-.+.|...+|++-|-+. -|+..|.-+++...+.|.+++-.+.+....+. ...| ..-+.|+-+|++.++..
T Consensus 1114 QL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~--~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREP--YIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCc--cchHHHHHHHHHhchHH
Confidence 99999999998887554 36778999999999999999999988877765 3333 34568899999999987
Q ss_pred HHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 326 EALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
+-.++. ..|+......+.+-|...|.++.|.-+|..+ .-|..+...+...|+++.|.+.-++..
T Consensus 1184 elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn-- 1247 (1666)
T KOG0985|consen 1184 ELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN-- 1247 (1666)
T ss_pred HHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc--
Confidence 765544 3677777788888899999999998888655 357888888899999999888766543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CH
Q 008097 406 GYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP-DY 484 (577)
Q Consensus 406 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~ 484 (577)
+..||.-+-.+|...+.+.-| .|. ...+.....-..-++.-|...|-++|-..+++.-. |++- -.
T Consensus 1248 ----s~ktWK~VcfaCvd~~EFrlA------QiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHM 1313 (1666)
T KOG0985|consen 1248 ----STKTWKEVCFACVDKEEFRLA------QIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHM 1313 (1666)
T ss_pred ----chhHHHHHHHHHhchhhhhHH------Hhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHH
Confidence 456999999999887776655 444 44455566678889999999999999999998877 5543 34
Q ss_pred HHHHHHHHHHHhcchHH
Q 008097 485 LTWNSLLICLSQQTTWL 501 (577)
Q Consensus 485 ~~~~~ll~~~~~~~~~~ 501 (577)
..|+.|---|++..-.+
T Consensus 1314 gmfTELaiLYskykp~k 1330 (1666)
T KOG0985|consen 1314 GMFTELAILYSKYKPEK 1330 (1666)
T ss_pred HHHHHHHHHHHhcCHHH
Confidence 56777777777666544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=59.62 Aligned_cols=32 Identities=53% Similarity=0.892 Sum_probs=21.9
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 371 GGVPNVVIYDCLIHAYCQEERVREASELMKEM 402 (577)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 402 (577)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666677777777777777777777666666
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.9e-05 Score=82.97 Aligned_cols=370 Identities=14% Similarity=0.049 Sum_probs=208.3
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHH----HHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILD----VLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
.+......+...|++.+|....... ++......++. .+... ++..+...+. .+.......+.......
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a------~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~-~lp~~~~~~~~~l~~~~ 415 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA------GDAQLLRDILLQHGWSLFNQGELSLLEECLN-ALPWEVLLENPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC------CCHHHHHHHHHHhHHHHHhcCChHHHHHHHH-hCCHHHHhcCcchHHHH
Confidence 3445556666777777766655444 12222222222 12223 5555555555 33211111122222333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCC------CC--cchHHHHHHHHHhcCCHhHHHHHHHhccC--C--Cc----eeHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVK------PN--SVIYNTLIHSLCKNGKVGRARSLMSDMEE--P--ND----VTFS 151 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~ 151 (577)
...+...|+++++...+....+.--. +. ......+...+...|++++|...+++..+ + +. ..++
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 44455788999999988877543111 11 11122233456678999999999887543 2 21 2345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGF---VP--DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~---~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.+...+...|++++|...+++.....- .+ ...++..+...+...|+++.|...+++.... ...
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~------------~~~ 563 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL------------IEE 563 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HHH
Confidence 555667789999999999888764311 11 1234455566778889999998887665432 211
Q ss_pred HHHcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 227 MERKGCL--P-NVDTYNILISSYCETGVLDSALDVFNDMKIDG--ISW--NFVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 227 ~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
.+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|.+.+.....
T Consensus 564 ---~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 564 ---QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ---hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2211 1 22334455566777899999999998875431 112 233444556677888999999999888754
Q ss_pred ccCCCCCCcccHH-----HHHHHHHhcCCHHHHHHHHHHHhhcCCCce-e----hHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 300 SKEGSKGRISPYN-----SVLYGLYRENQQDEALEYLKQMEKLFPRAV-D----RSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 300 ~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~----~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...... ....+. ..+..+...|+.+.|...+.......+... . +..+...+...|+.++|...+++...
T Consensus 641 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 641 LLGNGR-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHhccc-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 311111 111111 122344557888888888766544211111 0 22344556677777777777777655
Q ss_pred c----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 370 E----GGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 370 ~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
. |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 720 ~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 720 NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 22221 234555566677777777777777777654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=59.30 Aligned_cols=33 Identities=45% Similarity=0.844 Sum_probs=23.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 111 GVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 111 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 666777777777777777777777777777663
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.7e-05 Score=73.56 Aligned_cols=195 Identities=10% Similarity=0.029 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCC-CCCHHHHHHH--HHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNM-TPSLKIFNSI--LDVLVKEDIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l--i~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
|-.+..|..+...+...|+.+.+.+.+....+..+ ..+......+ +..+...++++|.+.++ ...+.. +.|...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~-~~l~~~-P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLE-QLLDDY-PRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHC-CCcHHHH
Confidence 33456677777788788888887777777654322 2232222221 12222238888988888 444332 2233333
Q ss_pred HHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHH
Q 008097 85 AILMKGLC----LTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICA 156 (577)
Q Consensus 85 ~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 156 (577)
.. ...+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++..+ .+...+..+...
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 31 11222 234444555544431 111222 23334555677888888888888888764 334566777778
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCH--hhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 157 YCKEENLVNALVLLEKSFSFGFV-PDV--VTITKVLELLCSVGRVMDAVEILEE 207 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~ 207 (577)
+...|++++|...+++....... |+. ..|..+...+...|++++|..+++.
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888887654321 222 2344566667777777777766544
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=0.00026 Score=71.50 Aligned_cols=137 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred HHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHH---------hhcCCCCCHhhHHHHHH
Q 008097 20 GLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKM---------MASGVQGDDYTYAILMK 89 (577)
Q Consensus 20 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m---------~~~~~~~~~~~~~~ll~ 89 (577)
.|...|+.+.|.+-...+ .+...|..|.+.+++. +++-|.-.+- .| ++.-..|+ .+=..+..
T Consensus 737 fyvtiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClG-hm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLG-HMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhh-hhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 466779999998887777 3567899999999887 6655544333 22 11112232 22222233
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-CCceeHHHHHHHHHhcCChHHHHH
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-PNDVTFSILICAYCKEENLVNALV 168 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~ 168 (577)
.....|.+++|+.+|++..+. ..|=..|...|.+++|.++-+.-.. .=..||..-...+-..++.+.|++
T Consensus 809 LAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 345789999999999998773 3455678888999999888655322 112355555566666788888888
Q ss_pred HHHHH
Q 008097 169 LLEKS 173 (577)
Q Consensus 169 ~~~~m 173 (577)
.|++.
T Consensus 880 yyEK~ 884 (1416)
T KOG3617|consen 880 YYEKA 884 (1416)
T ss_pred HHHhc
Confidence 87754
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.1e-07 Score=82.25 Aligned_cols=254 Identities=12% Similarity=0.046 Sum_probs=140.2
Q ss_pred HHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 19 RGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRV 97 (577)
Q Consensus 19 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 97 (577)
+-+.-.|++..++.-.+ .............-.+.+++... ++..++. .+.. +..|.......+...+....+-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~----ei~~-~~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS----EIKK-SSSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH----HS-T-TSSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH----Hhcc-CCChhHHHHHHHHHHHhCccch
Confidence 34455688888886666 32222222233344455566555 5554433 2222 2255555554444433333444
Q ss_pred hHHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008097 98 GDGFKLLHVMKSRGVK-PNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 98 ~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
+.+..-+.+....... .+..+......+|...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444444444333322 22233333345567788899888888765 45566667778888889999998888888764
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 008097 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 177 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 256 (577)
+ +..+...+..++...- .....+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.
T Consensus 161 ~---eD~~l~qLa~awv~l~---------------~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 161 D---EDSILTQLAEAWVNLA---------------TGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp S---CCHHHHHHHHHHHHHH---------------HTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred C---CcHHHHHHHHHHHHHH---------------hCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3 3345555555554310 0012345555556665443 4456667777777777778888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhc
Q 008097 257 DVFNDMKIDGISWNFVTYDTLIRGLCSGGRI-DDGLKILQLMEDS 300 (577)
Q Consensus 257 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~ 300 (577)
+++.+..... +-|..++..++......|+. +.+.+.+.++...
T Consensus 222 ~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 222 ELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777766543 33556666677666666766 5566677766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-06 Score=81.12 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=185.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+.+.|++.+|.-.|+...+.. +-+...|.-|.......++-..|+..+.+..+.+++ +....-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~---NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT---NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc---cHHHHHHHHHHHhhhhhHH
Confidence 567899999999999888763 446788888888888899999999999999887444 6677778888899999999
Q ss_pred HHHHHHHHHhhcCCCceehHH--------HHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 326 EALEYLKQMEKLFPRAVDRSL--------KILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~~~~~~~--------l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
+|+..++......|....... .-..+.....+....++|-++... +..+|+.....|.-.|--.|.+++|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999999988654321110000 001222233345556666666554 44478888999999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 397 ELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 397 ~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
+.|+..+. ++| |..+||-|.-.++...+.++|+..|++.+. +.|+ +.....|.-.|...|.++||.+.|-+
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-----LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-----LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-----cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999997 567 566799999999999999999999997777 7884 45666677889999999999998877
Q ss_pred HHH---CC------CCCCHHHHHHHHHHHHhcchHHHH
Q 008097 475 MVG---KG------ILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 475 m~~---~~------~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
.+. .+ -.++..+|.+|=.+++..+..+++
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 653 21 112346898888887777776643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.6e-05 Score=65.65 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH-HH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI-LM 88 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~-ll 88 (577)
..-+++.+..+.+..++.+|++++..-.+..+ ++......+-.+|... ++..|-..|+ .+... .|...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYe-QL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYE-QLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh--ChHHHHHHHHHH
Confidence 34467788888899999999999998877542 3666677777777777 9999999999 55442 344333321 23
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHH--HHhcCCHhHHHHHHHhcc-CCCceeHHHHHHHHHhcCChHH
Q 008097 89 KGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHS--LCKNGKVGRARSLMSDME-EPNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~ 165 (577)
+.+.+.+.+..|+++...|... |+...-..-+.+ ....+++..++.+.++.+ +.+..+.+-..-...+.|++++
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 4566788999999999888653 222222112222 335688999999999998 4666666666566678999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC---------h
Q 008097 166 ALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN---------V 236 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~---------~ 236 (577)
|++-|......+---....|+..+ +..+.|+...|++...+++.+.-....+-....-.+.......-| +
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999987765444456776555 445678888888887777665211111111100000000000001 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
..+|.-...+.+.|+++.|.+-+..|.-. .-..|++|+..+.-+-. .+++.+..+-+.-+...+| . ...|+..++
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-f--P~ETFANlL 317 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-F--PPETFANLL 317 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-C--ChHHHHHHH
Confidence 12333333455678888888888877532 23456777765543322 3455555555555555432 2 345677777
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008097 316 YGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~ 334 (577)
-.|+++.-++-|-.++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8888888887777776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-06 Score=78.04 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=120.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN-F---VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
....+..+...+...|++++|...|+++... .|+ . .++..+..++.+.|++++|...++.+.+..++.+.-...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556777778888999999999999988765 232 2 456777888899999999999999998764432211124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 311 YNSVLYGLYRE--------NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 311 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+..++.+. |+.++|.+.|+.+....|+......... ....+... -......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~-------------~~~~~~~~----~~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK-------------RMDYLRNR----LAGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH-------------HHHHHHHH----HHHHHHHH
Confidence 55555555544 6788888888888877776532211110 00000000 00111245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 383 IHAYCQEERVREASELMKEMTGHGY-LP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|.+.|++++|+..+++..+..- .| ....+..+..++.+.|+.++|..+++ .+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~-~l~ 230 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA-VLG 230 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH-HHH
Confidence 5677888888888888888876421 12 24567788888888888888888887 554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00047 Score=66.54 Aligned_cols=416 Identities=11% Similarity=0.067 Sum_probs=224.3
Q ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHH
Q 008097 44 PSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLI 123 (577)
Q Consensus 44 ~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 123 (577)
-|+.+|+.||+-+-...++++++.++ .+... .+-....|..-|..-.+.++++..+++|.+.+..- .+...|...+
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YE-q~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYE-QLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHH-HHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 48999999999876669999999999 44431 23346678888999999999999999999998764 3566777777
Q ss_pred HHHHh--cCCHhHHHHH----HHhcc------CCCceeHHHHHHH---------HHhcCChHHHHHHHHHHHhCCCCCCH
Q 008097 124 HSLCK--NGKVGRARSL----MSDME------EPNDVTFSILICA---------YCKEENLVNALVLLEKSFSFGFVPDV 182 (577)
Q Consensus 124 ~~~~~--~g~~~~A~~~----~~~~~------~~~~~~~~~li~~---------~~~~~~~~~A~~~~~~m~~~g~~~~~ 182 (577)
+ |.+ .|+...++.. |+-.. -.+-..|+..+.. |..+.+.+...++|.++....+.-=.
T Consensus 94 ~-YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 94 S-YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred H-HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6 443 2444332222 22211 1233446665543 44555677778888888743221111
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCCCChhh---------------HHHHHHH
Q 008097 183 VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCLPNVDT---------------YNILISS 245 (577)
Q Consensus 183 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~---------------~~~li~~ 245 (577)
..|+-.. ++-+.=+.-.|+++.. .+...+..|+++++++.. +|...+..+ |-.+|.-
T Consensus 173 kLW~DY~-~fE~~IN~~tarK~i~-----e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 173 KLWKDYE-AFEQEINIITARKFIG-----ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH-----hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 1111110 0000001111111111 233345556666666543 333322222 4444432
Q ss_pred HHhcCCh--------hHHHHHHHHH-HHCCCCcCHHHHH-H----HHHHHHcCCC-------hHHHHHHHHHHHhccCCC
Q 008097 246 YCETGVL--------DSALDVFNDM-KIDGISWNFVTYD-T----LIRGLCSGGR-------IDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 246 ~~~~g~~--------~~A~~~~~~m-~~~g~~~~~~~~~-~----ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~ 304 (577)
=-.++-- ....-.+++. .-.+..|+..-.. . .-+.+...|+ -+++..+++..... ..
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~--l~ 324 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG--LL 324 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH--HH
Confidence 2111110 1111222221 1223333332111 1 1122333343 34555555555443 11
Q ss_pred CCCcccHHHHHHHHH---hcCCHHHHHHHHHHHhhcC--CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhh
Q 008097 305 KGRISPYNSVLYGLY---RENQQDEALEYLKQMEKLF--PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVI 378 (577)
Q Consensus 305 ~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 378 (577)
.-+..+|..+.+--- +.+..+.....++++.... .-...|..++..-.+..-++.|..+|.+..+.+..+ ++..
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 112222222221111 1112445555666655432 123445666666667777888888888888776666 6677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li 456 (577)
+++++.-||. ++..-|.++|+--.+. +.-++.--...++-+.+.++-..+..+|++.+. .++.| ....|..++
T Consensus 405 a~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~---s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 405 AAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT---SVLSADKSKEIWDRML 479 (656)
T ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh---ccCChhhhHHHHHHHH
Confidence 7777776664 6667788888765432 122333445566667778888888888884444 24444 457788888
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+--..-|++..+.++-+++..
T Consensus 480 ~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 480 EYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888777764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00032 Score=63.67 Aligned_cols=362 Identities=14% Similarity=0.102 Sum_probs=223.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH---HHHHHhcCCHhHHHHHHHhccCCCceeHHHHH---HHHHhc
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL---IHSLCKNGKVGRARSLMSDMEEPNDVTFSILI---CAYCKE 160 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~ 160 (577)
+-+.+...|++..|+.-|...++. |+..|.++ ...|...|+...|+.=|++..+.-+..+.+-| ..+.+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 344444556666666666555542 22333332 23455556666665555555542222222222 345677
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYN 240 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 240 (577)
|.+++|..-|+..+... |+. .....+..+.-..++-..+..++......|+...|......+.+-.+ -|...+.
T Consensus 120 Gele~A~~DF~~vl~~~--~s~---~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~ 193 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSN---GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQ 193 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCc---chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHH
Confidence 77777777777776543 221 12234444444445555555555555667777777777887777532 2666777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH------
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV------ 314 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l------ 314 (577)
.-..+|...|++..|+.-++...+.. .-|..++.-+-..+...|+.+.+....++..+.++..+.--..|..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHH
Confidence 77889999999999998888776553 33566666677778889999999999888887654433322333322
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHhhcCCCce--eh---HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHH
Q 008097 315 ---LYGLYRENQQDEALEYLKQMEKLFPRAV--DR---SLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHA 385 (577)
Q Consensus 315 ---i~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~ 385 (577)
+......++|.++++-.+...+..|... .+ ..+-..|...|++.+|++...+++.. .|| +.++.--..+
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 1234556788888888888888777632 22 33445667889999999999999884 455 8888888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh
Q 008097 386 YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 465 (577)
|.-...++.|+.-|+...+.+ ++..-.. . -.+.|.++.. ... ...-|-.| +--|.-.-
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n--~sn~~~r--------e-Gle~Akrlkk-qs~--------kRDYYKIL--GVkRnAsK 408 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN--ESNTRAR--------E-GLERAKRLKK-QSG--------KRDYYKIL--GVKRNASK 408 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC--cccHHHH--------H-HHHHHHHHHH-Hhc--------cchHHHHh--hhcccccH
Confidence 999999999999999998853 4432211 1 1344555544 222 11112211 12233345
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 008097 466 QSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 466 ~~A~~~~~~m~~~~~~p~~ 484 (577)
.|..+.+++|-.+ +.||.
T Consensus 409 qEI~KAYRKlAqk-WHPDN 426 (504)
T KOG0624|consen 409 QEITKAYRKLAQK-WHPDN 426 (504)
T ss_pred HHHHHHHHHHHHh-cCCcc
Confidence 6666777777654 77876
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-05 Score=84.14 Aligned_cols=230 Identities=10% Similarity=0.042 Sum_probs=181.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
+-+...|-..|....+.+++++|+++++++...=. ...--...|.++++.-..-|.-+...++|+++.+.-.....|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556788888888889999999999988875300 0001234688888888888888889999999988655566788
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHH-HHHHHHHH
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI--ASTF-NTVLSGLC 422 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~-~~ll~~~~ 422 (577)
.|...|.+.+..++|.++++.|.++ +.-....|...+..+.++.+-++|..++.+..+. -|- ++-+ .-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999987 3357789999999999999999999999998874 354 3333 23344457
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcch
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY--LTWNSLLICLSQQTT 499 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~ 499 (577)
+.|+.+.++.+|+..+. -.| ....|+..++.-.++|..+.+..+|++....++.|-- ..|.-.|.--..+|+
T Consensus 1612 k~GDaeRGRtlfEgll~-----ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLS-----AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hcCCchhhHHHHHHHHh-----hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 89999999999994444 234 7789999999999999999999999999998888764 567777777777887
Q ss_pred HHHHHH
Q 008097 500 WLLLLL 505 (577)
Q Consensus 500 ~~~~~~ 505 (577)
.+-.+.
T Consensus 1687 e~~vE~ 1692 (1710)
T KOG1070|consen 1687 EKNVEY 1692 (1710)
T ss_pred hhhHHH
Confidence 665443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-05 Score=84.21 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=174.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...|...|.-..+.++.+.|+++.++++.... |++=.+ -...|.++++.-...|.-+...++|+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN----------~REeeE-----KLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTIN----------FREEEE-----KLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC----------cchhHH-----HHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 356777777777788888888888766544311 000001 23468888888888888889999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++.+. .-....|..|...|.+.+.+++|.++++.|.+. .......|...+..+.++++-+.|..++.++.+..|.
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK---F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK---FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH---hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99875 223456888999999999999999999999986 2246678999999999999999999999999987776
Q ss_pred ce---ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHH
Q 008097 341 AV---DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS--TFN 415 (577)
Q Consensus 341 ~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~ 415 (577)
.. .....+..-.++|+.+.+..+|+..... .+.-...|+..|+.-.++|+.+.+..+|++.+..++.|-.. .|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 22 2334455667999999999999999886 44567899999999999999999999999999988887432 455
Q ss_pred HHHHHHHhcCCHHH
Q 008097 416 TVLSGLCRQGNVGT 429 (577)
Q Consensus 416 ~ll~~~~~~g~~~~ 429 (577)
-.+..=...|+-+.
T Consensus 1676 kwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHHHhcCchhh
Confidence 55544444555433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.0001 Score=82.13 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=158.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHcC
Q 008097 214 LGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSALDVFNDMKID----GI-SWNFVTYDTLIRGLCSG 284 (577)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~ 284 (577)
.|++++|...+++....-...+ ....+.+...+...|++++|...+.+.... |- .+-..++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 4555555555555544211111 123455566677889999999988887642 11 11123445566677888
Q ss_pred CChHHHHHHHHHHHhccC--CCCC---CcccHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC--ceehHHHHHHhhh
Q 008097 285 GRIDDGLKILQLMEDSKE--GSKG---RISPYNSVLYGLYRENQQDEALEYLKQMEKL----FPR--AVDRSLKILGFCV 353 (577)
Q Consensus 285 g~~~~a~~~~~~~~~~~~--~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~p~--~~~~~~l~~~~~~ 353 (577)
|+++.|...+++...... +... ....+..+...+...|++++|...+.+.... .+. ...+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999988877654311 1110 1122334555667789999999888887553 111 1122334456778
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhc
Q 008097 354 DGNVEDAKRCFDQMIEEGGV-PNVVIY-----DCLIHAYCQEERVREASELMKEMTGHGYLPIA---STFNTVLSGLCRQ 424 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~ 424 (577)
.|+.+.|...+++....... .....+ ...+..+...|+.+.|.+++............ ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 89999999988887553111 111111 11224455678889998888776542211111 1134566678889
Q ss_pred CCHHHHHHHHHHhhccc-CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 425 GNVGTALKLVEEDMRGI-GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|+.++|...+++.+... ..+..+ ...++..+..++.+.|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999888544410 112222 2345667778888999999999999998865
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.5e-05 Score=71.51 Aligned_cols=104 Identities=7% Similarity=-0.056 Sum_probs=83.2
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCC-HhhHHHHHHHHHhcC
Q 008097 18 IRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGD-DYTYAILMKGLCLTN 95 (577)
Q Consensus 18 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~ 95 (577)
-++....|+++.|+..|...+...+. |.+.|.--..+|++. ++.+|++=-. ....+.|+ +..|+-.-.++.-.|
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~---k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDAT---KTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHH---HHHhcCCchhhHHHHhHHHHHhcc
Confidence 45667889999999999999887654 888899889999998 9999887544 23335666 567888888888999
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSL 126 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 126 (577)
++++|+.-|.+-++.. +.+...++.|..++
T Consensus 85 ~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred cHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9999999999988864 33666777777777
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0003 Score=72.70 Aligned_cols=439 Identities=10% Similarity=-0.028 Sum_probs=241.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 26 MINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLL 104 (577)
Q Consensus 26 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 104 (577)
+...|+..|=+..+.++ --...|..|-..|..- +...|...|+ ...+-. ..|...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~-KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFD-KAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 35666666666655332 1245577777777776 8888888888 333322 235666778888899999999998883
Q ss_pred HHHHhCCC-CCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008097 105 HVMKSRGV-KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVP 180 (577)
Q Consensus 105 ~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 180 (577)
-..-+... ..-..-|....-.|.+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|.+... ++|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 33322210 00111222244456777888888888888764 4677888999999999999999999988764 344
Q ss_pred CHhhHHH--HHHHHHhcCCHhHHHHHHHHHHHh---hhcCChhHHH--------------------------HHHHHHHH
Q 008097 181 DVVTITK--VLELLCSVGRVMDAVEILEESGEQ---GRLGKVKGGC--------------------------RFLKEMER 229 (577)
Q Consensus 181 ~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~---~~~g~~~~a~--------------------------~~~~~~~~ 229 (577)
+. +|.. .....+..|.+.+|...+..++.. .++++...|. +.|.-...
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 42 2222 233456788899888888877665 2222222222 22222211
Q ss_pred cCCCCChhhHHHHHHHHHhcCChh--H----HHHH-HHHHHHCCCCc--------------------CHHHHHHHHHHHH
Q 008097 230 KGCLPNVDTYNILISSYCETGVLD--S----ALDV-FNDMKIDGISW--------------------NFVTYDTLIRGLC 282 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~--~----A~~~-~~~m~~~g~~~--------------------~~~~~~~ll~~~~ 282 (577)
....-+...|-.+-++|.-.-..+ . ...+ +.+....+.-| +..+|..+...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 111112223333222221110000 0 0111 11111111111 1222333333222
Q ss_pred c----C----CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhh
Q 008097 283 S----G----GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCV 353 (577)
Q Consensus 283 ~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~ 353 (577)
+ + .+...|...+....+.... +...|+.|.-. ...|.+.-|...|-+.....| ...+|..+...+.+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~an---n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCAN---NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhc---cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEe
Confidence 2 1 1223555555555443211 44556655544 444566666666655555444 34556666666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEM--T--GHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
..+++.|...|...+.. .+.|...|--....-...|+.-++..+|..- . ..|-.|+..-|..........|+.++
T Consensus 863 n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 88888999999888875 2346677777766666778777777777651 1 23344555555444444455555444
Q ss_pred HHHHHHHhhc-------ccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 430 ALKLVEEDMR-------GIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 430 a~~~~~~~m~-------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
-+.-.+ .+. ..-.+.+-....|.+....+-+.+.+++|.++..+..
T Consensus 942 ~I~t~~-ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 942 SINTAR-KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhh-hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 332222 111 0001222355667777777777777777777666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-06 Score=75.16 Aligned_cols=187 Identities=16% Similarity=0.126 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee----hH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD----RS 345 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~ 345 (577)
....+..+...+.+.|++++|...|+.+....+..+.....+..+..++.+.|++++|...++++.+..|+... +.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566777778888999999999999888763332212245677888889999999999999999887775443 34
Q ss_pred HHHHHhhhc--------CCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008097 346 LKILGFCVD--------GNVEDAKRCFDQMIEEGGVPNV-VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNT 416 (577)
Q Consensus 346 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 416 (577)
.+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 444445443 6788888888888774 3332 23322221110 0000 00 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+...+.+.|++++|...+++.+. ...-.| ....+..++.++...|++++|...++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56678999999999999996555 333345 6789999999999999999999999998753
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.4e-06 Score=81.72 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=88.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
...|.--..-+-..|+.+.|+.++..+.. |..++...|-.|+.++|-++-++- .|....-.+.+.|-
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYE 978 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhh
Confidence 34455555555667888888888877654 566677777889999988887654 36666667889999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 388 QEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG---------------NVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
..|++.+|..+|.+.+ +|...|+.|...+ +.-.|-++|+ ... . -.
T Consensus 979 n~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE-e~g-----~-----~~ 1038 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE-ELG-----G-----YA 1038 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH-Hcc-----h-----hh
Confidence 9999999999998876 3333344333332 3334455555 211 1 23
Q ss_pred HHHHHHHHHcCChhHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~ 472 (577)
...+-.|-++|.+.+|+++-
T Consensus 1039 ~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHH
Confidence 44567789999998888763
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-05 Score=76.92 Aligned_cols=258 Identities=16% Similarity=0.108 Sum_probs=176.2
Q ss_pred HHHhcCCHhHHHHHHHhccCC---CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 008097 125 SLCKNGKVGRARSLMSDMEEP---NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDA 201 (577)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 201 (577)
-+.+.|++.+|.-.|+..... +...|-.|......+++-..|+..+++.++.. +-|....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 357889999999999988753 46689999999999999999999999988754 22466777778888888888888
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCcCHHHHHHHHHH
Q 008097 202 VEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKI-DGISWNFVTYDTLIRG 280 (577)
Q Consensus 202 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~ll~~ 280 (577)
...++.-+... +.... ....+ ++...-+. ..+.....+....++|-++.. .+..+|......|--.
T Consensus 373 l~~L~~Wi~~~----p~y~~-----l~~a~--~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 373 LKMLDKWIRNK----PKYVH-----LVSAG--ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHHHHHHHHhC----ccchh-----ccccC--ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 88776644330 00000 00000 00000000 111222234455556655543 4434666777777777
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 359 (577)
|--.|++++|...|+.....+|. |...||.|...++...+.++|+..+.+..++.|.- ..+..|...|...|.+++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pn---d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPN---DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCc---hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 88888888888888888876433 77888888888888888888988888888888875 456667778888888888
Q ss_pred HHHHHHHHHHcC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 360 AKRCFDQMIEEG---------GVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 360 A~~~~~~~~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
|...|-..+... ..++...|..|=.++...++.|-+.+..
T Consensus 517 A~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 517 AVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 888887765531 1123457888888888888777555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.4e-06 Score=80.96 Aligned_cols=210 Identities=13% Similarity=0.082 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|...|.+|+..|+..+|..+..+-.+. +||+..|..+.+......-+++|.++++....+ .-..+.
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar---------A~r~~~ 492 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR---------AQRSLA 492 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH---------HHHhhc
Confidence 345778899999999999999998888874 889999999999888888899999998876543 111122
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 393 (577)
......++++++.+.|+...+..| ...+|..+..++.++++++.|.+.|...... .|| ...||.+-.+|.+.|+-.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhH
Confidence 223347899999999998888766 4567888888888999999999999998874 454 678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
+|...+.+..+.+.. +...|-..+-...+.|.+++|++.+. .+.. ......|..+...++....+
T Consensus 571 ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~-rll~-~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYH-RLLD-LRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHH-HHHH-hhhhcccchhhHHHHHHHHh
Confidence 999999999876633 33345555556678899999999998 4442 11122256666655555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-05 Score=68.32 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=54.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCC--hHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG-LCSGGR--IDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
|...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|+ .++|.+++++..+.++. +...+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~~al 147 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EVTAL 147 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---ChhHH
Confidence 45556666666666666666666666655542 2244444444443 244444 35666666666554322 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
..+...+.+.|++++|...|+++.+..|
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555555555555555555555555433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-05 Score=68.25 Aligned_cols=320 Identities=15% Similarity=0.119 Sum_probs=183.0
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHH
Q 008097 75 SGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSI 152 (577)
Q Consensus 75 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 152 (577)
.|+....-.+.+++..+.+..++..|.+++..-.+... .+..-.+.|...|....++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 34444444567777777778888888888877766532 2566677777778888888888888887764 33333322
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC
Q 008097 153 -LICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 153 -li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 231 (577)
-...+.+.+.+..|+.+...|... |+ ..+..+. ++.|.. ...+++..++.+.++....|
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~--L~~~~lq-------LqaAIk--------Yse~Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PA--LHSRVLQ-------LQAAIK--------YSEGDLPGSRSLVEQLPSEN 142 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HH--HHHHHHH-------HHHHHh--------cccccCcchHHHHHhccCCC
Confidence 234555677777777777766431 11 1111111 111111 23455555555555555321
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcc-
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRIS- 309 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 309 (577)
+..+.+.......+.|+++.|.+-|+...+- |.. ....|+..+.. .+.++.+.|.+...++.++ |++..+.
T Consensus 143 ---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieR--G~r~HPEl 215 (459)
T KOG4340|consen 143 ---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIER--GIRQHPEL 215 (459)
T ss_pred ---ccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHh--hhhcCCcc
Confidence 3444444444556788899999888887764 444 34566655544 4568888888888888776 3321110
Q ss_pred ---cHHHHHHHHHhcCCH-HHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHH
Q 008097 310 ---PYNSVLYGLYRENQQ-DEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE-GGVPNVVIYDCLIH 384 (577)
Q Consensus 310 ---~~~~li~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~ 384 (577)
.-+-.++.-. .|+. ..+..-+ ...++.-...+.+.|+.+.|.+.+..|.-+ ....|++|...+.-
T Consensus 216 gIGm~tegiDvrs-vgNt~~lh~Sal---------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 216 GIGMTTEGIDVRS-VGNTLVLHQSAL---------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred CccceeccCchhc-ccchHHHHHHHH---------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 0000000000 0000 0000000 011233334456778888888888877543 23356777665543
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 385 AYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.= ..+++.+..+-++-+... .| ...||..++-.||+..-++-|-.++.
T Consensus 286 ~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 286 MN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred hc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 22 244555555555555543 34 46799999999999999999988887
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=68.54 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=108.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
.+...++.++|+.+..++++. .| +..+|+.--.++...| +++++...++.+...++. +..+|+.....+.+.|
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk---nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK---NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc---chHHhHHHHHHHHHcC
Confidence 334455666666666666654 22 2233443333444445 456666666666654222 4444554444444444
Q ss_pred CH--HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CC----H
Q 008097 323 QQ--DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE---ER----V 392 (577)
Q Consensus 323 ~~--~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~ 392 (577)
.. ++++.+++++.+..|. ...|+.....+.+.|+++++++.++++++.++ .|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccH
Confidence 42 4556666666665443 34555555555566667777777777766533 3555666555544433 22 2
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 393 REASELMKEMTGHGYLP-IASTFNTVLSGLCRQ----GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
++.++...+++.. .| |...|+.+...+... +...+|..++.+... ..| +......|++.|+.
T Consensus 200 e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~-----~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS-----KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc-----ccCCcHHHHHHHHHHHHh
Confidence 3556666666653 34 444566666555552 334556666663222 234 45556677777765
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-05 Score=66.36 Aligned_cols=114 Identities=11% Similarity=-0.088 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 362 RCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
.+|++.++. .|+ .+......+...|++++|...|++..... +.+...+..+..+|...|++++|...|++.+.
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 455666552 343 35566777788888888888888888643 23566778888888888888888888885555
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
..| +...+..+..++.+.|++++|.+.+++..+ +.|+...|
T Consensus 87 ---l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 87 ---LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred ---cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 456 777888888888888888888888888874 55664333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-05 Score=76.47 Aligned_cols=220 Identities=14% Similarity=0.043 Sum_probs=134.0
Q ss_pred CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 008097 113 KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELL 192 (577)
Q Consensus 113 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 192 (577)
+|-...-..+...+...|-...|..+|++.. .|.-.|-+|+..|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 4444455677788888899999999998864 577788888888888888888877766 367788888887777
Q ss_pred HhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHH
Q 008097 193 CSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFV 272 (577)
Q Consensus 193 ~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 272 (577)
....-++.|.++.+..-.. .--.+.......++++++.+.|+.-.+.. +.-..
T Consensus 468 ~d~s~yEkawElsn~~sar--------------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~ 520 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------------------------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLG 520 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------------------------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchh
Confidence 6666667777665443111 00111111122566666666666554432 22345
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGF 351 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~ 351 (577)
+|-..-.+..+.++++.|.+.|.......++ +...||.+-.+|.+.++-.+|...+.+..+.. .+...|-..+..-
T Consensus 521 ~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd---~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvs 597 (777)
T KOG1128|consen 521 TWFGLGCAALQLEKEQAAVKAFHRCVTLEPD---NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVS 597 (777)
T ss_pred HHHhccHHHHHHhhhHHHHHHHHHHhhcCCC---chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhh
Confidence 5555555566666666666666665554222 44556666666666666666666666665532 2223333444444
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 008097 352 CVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~ 369 (577)
.+.|.+++|.+.+.++..
T Consensus 598 vdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 598 VDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcccHHHHHHHHHHHHH
Confidence 555666666666665554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00025 Score=74.87 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=72.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+-.+..+|-+.|+.++|..+++++.+.. +-|....+.+...|+.. ++++|.+++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 44567778888999999999999999998876 55788889999989888 999999988877654
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
+...+++..+.+++.++....|+.+.
T Consensus 179 ---~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 179 ---FIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred ---HHhhhcchHHHHHHHHHHhcCcccch
Confidence 66677888888888888877665443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0011 Score=64.24 Aligned_cols=408 Identities=11% Similarity=0.019 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcCCHhHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPN-SVIYNTLIHSLCKNGKVGRARSL 138 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~ 138 (577)
+++.|+..|. ...... ++|...|+.-..+|+..|++++|++=-.+-++. .|+ ..-|+.+..++.-.|++++|+.-
T Consensus 17 d~~~ai~~~t-~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 17 DFETAIRLFT-EAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred cHHHHHHHHH-HHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHHH
Confidence 8888888887 333332 336777888888888888888887766666654 344 34577777777778888888888
Q ss_pred HHhccCC---CceeHHHHHHHHHhcCChHHH-HHHH------HHHHhCC---CCCCHhhHHHHHHHHHhcC-------CH
Q 008097 139 MSDMEEP---NDVTFSILICAYCKEENLVNA-LVLL------EKSFSFG---FVPDVVTITKVLELLCSVG-------RV 198 (577)
Q Consensus 139 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A-~~~~------~~m~~~g---~~~~~~~~~~ll~~~~~~g-------~~ 198 (577)
|.+-.+. |...++-+..++ ..+.+ .+.| ....... .......|..++..+-+.. ..
T Consensus 93 y~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 93 YSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 8876642 334455555554 11111 1111 1111000 0001122333333322110 00
Q ss_pred hHHHHHHHHHHHh-------------hhcCChh----HHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 199 MDAVEILEESGEQ-------------GRLGKVK----GGCRFLKEMER-KGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 199 ~~a~~~~~~~~~~-------------~~~g~~~----~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
..-.+.+..+... ....... .......++.+ ....--..-...+.++..+..+++.|++-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0111111000000 0000000 00000000000 0000011123445556666667777777777
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR----ISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
...... -+..-++....+|...|.+.+.+..-....+.+.....+ ......+..+|.+.++++.+...|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 766553 233334455556666666665555544443331100000 01122233456666777777777777554
Q ss_pred cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008097 337 LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFN 415 (577)
Q Consensus 337 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 415 (577)
...++.. ..+....+++....+...-. .|... ---.-...+.+.|++..|+..+.+++... +-|...|.
T Consensus 327 e~Rt~~~-------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 327 EHRTPDL-------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred hhcCHHH-------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 2211111 11222233333333333221 12211 11112444556677777777777777653 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
.-.-+|.+.|.+..|+.=.++.++ ..| ...-|..=..++....++++|.+.+++..+ ..|+..-+..-+.-|
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ie-----L~p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIE-----LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRC 469 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHH
Confidence 666666777777777666654444 334 333344444444455567777777777653 334443333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7e-05 Score=65.76 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-HhcCC--HHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGL-CRQGN--VGT 429 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~--~~~ 429 (577)
.++.+++...++...+. -+.|...|..+...|...|++++|+..|++..+. .| |...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 44556666666666654 2456778888888888888888888888888774 35 455666666653 56666 488
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
|.+++++.+. ..| +...+..+...+.+.|++++|...|+++.+. ..|+.
T Consensus 129 A~~~l~~al~-----~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 129 TREMIDKALA-----LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHHHHHH-----hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 8888885555 455 6677888888888888888888888888754 34443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00016 Score=68.98 Aligned_cols=149 Identities=16% Similarity=0.170 Sum_probs=107.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceeh-HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDR-SLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERV 392 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (577)
.-.+...|++++|+..+..+.+..|+...| ......+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 334556778888888888887777765554 34456777888888888888888774 455 55666777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
.+|+.+++..... .+-|+..|..|..+|...|+..++..... ..|...|+++.|..++
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------------E~~~~~G~~~~A~~~l 448 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA---------------------EGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH---------------------HHHHhCCCHHHHHHHH
Confidence 8888888887754 24467778888888888888887766655 2456678888888888
Q ss_pred HHHHHCCCCCCHHHHH
Q 008097 473 VQMVGKGILPDYLTWN 488 (577)
Q Consensus 473 ~~m~~~~~~p~~~~~~ 488 (577)
....++ ++++...|.
T Consensus 449 ~~A~~~-~~~~~~~~a 463 (484)
T COG4783 449 MRASQQ-VKLGFPDWA 463 (484)
T ss_pred HHHHHh-ccCCcHHHH
Confidence 888765 566666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-05 Score=63.85 Aligned_cols=104 Identities=11% Similarity=-0.023 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
+..+..+...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|+.....+++ +...+..+.
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~---~~~a~~~lg 99 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS---HPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHH
Confidence 3335556667777788888888888777653 446667777777777788888888888877765332 666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
.++...|++++|...|+...+..|+...
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 7777777777777777777776665443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-06 Score=51.97 Aligned_cols=34 Identities=47% Similarity=0.701 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999898887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00019 Score=74.92 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=130.2
Q ss_pred HHHHhcCCHhHH-HHHHHHHHHh-hhcCChhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 190 ELLCSVGRVMDA-VEILEESGEQ-GRLGKVKGGCRFLKEMER--KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 190 ~~~~~~g~~~~a-~~~~~~~~~~-~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+.+..|..++| .+++.++.+. .+.+.+..+..-+-+... +....++..+-.|.....+.|.+++|..+++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~ 115 (694)
T PRK15179 36 AALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR 115 (694)
T ss_pred HHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 344555555554 4444444333 333443333333332222 223346778888888888999999999999998876
Q ss_pred CCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-cee
Q 008097 266 GISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVD 343 (577)
Q Consensus 266 g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 343 (577)
.|+ ......+...+.+.+++++|....++.....+. +......+..++.+.|++++|..+|+++....|+ ...
T Consensus 116 --~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~ 190 (694)
T PRK15179 116 --FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG 190 (694)
T ss_pred --CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH
Confidence 454 456677888889999999999999998876332 5566777788888999999999999999876665 566
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+...+...|+.++|...|++..+. ..|....|+..
T Consensus 191 ~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 191 YVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 777888888899999999999998876 22344444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00072 Score=63.95 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=149.9
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCC-
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN-QQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGN- 356 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~- 356 (577)
.+...++.++|..+...+...++. +..+|+.-..++...| .+++++..++++.+..|+. ..|+.....+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 344567889999999999886433 5566777666777777 6799999999999877754 456655545555565
Q ss_pred -HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH----H
Q 008097 357 -VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ---GNV----G 428 (577)
Q Consensus 357 -~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~ 428 (577)
.+++..+++++++.. +.|..+|+....++...|+++++++.++++++.+.. |...|+.....+.+. |.. +
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 367889998998863 457899999999999999999999999999986532 555676666666554 222 4
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc----CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK----GGFQSASMLLVQMVGKGILP-DYLTWNSLLICLSQ 496 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 496 (577)
+...+..+.+. +.| |...|+-+..+|... ++..+|.+++.+... ..| +......|+..++.
T Consensus 201 ~el~y~~~aI~-----~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAIL-----ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH-----hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 67777764666 567 778898888888874 445678888888764 334 45667777777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00033 Score=61.57 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~ 353 (577)
..+-..+...|+-+.+..+....... .+.|....+..+....+.|++.+|...|.+..... +|...|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~---~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA---YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc---CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH
Confidence 45556666677777777766664432 22344455557777777788888887777777653 455666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
.|+.+.|..-|.+..+. .+-+....|.|.-.|.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777664 22345566666666777777777777777776543 22455555566666777777777766
Q ss_pred HH
Q 008097 434 VE 435 (577)
Q Consensus 434 ~~ 435 (577)
..
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 65
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.6e-06 Score=51.01 Aligned_cols=35 Identities=37% Similarity=0.605 Sum_probs=32.7
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDV 182 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~ 182 (577)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00022 Score=68.08 Aligned_cols=118 Identities=14% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQD 325 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 325 (577)
+...|++++|+..++.+... .+-|...+....+.+.+.++..+|.+.++.+....+. ....+-.+..++.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN---SPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCChH
Confidence 44455555666655555543 1223344444455555556666666666555554222 2334444555555566666
Q ss_pred HHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 326 EALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 326 ~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
+|..+++......| ++..|..+..+|...|+..++....-+.
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 66555555554333 3445555555666666555555555444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00024 Score=62.41 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLY 319 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 319 (577)
..+-..+...|+-+.+..+....... .+.|.......+....+.|++..|...|.+.... .++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHH
Confidence 45556777788888888887775533 2345556666888889999999999999999875 4568999999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
+.|+.+.|..-|.+..+..|+ ....+.+...|.-.|+.+.|..++......+. .|...-..+.......|++++|.++
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 146 QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999999999999998765 45677888888899999999999999988633 3667777788888999999999998
Q ss_pred HHHHH
Q 008097 399 MKEMT 403 (577)
Q Consensus 399 ~~~m~ 403 (577)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 76654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00094 Score=58.28 Aligned_cols=157 Identities=15% Similarity=0.202 Sum_probs=101.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
++-+....|+.+.|...++++....|...-...+-. -+-..|++++|.++++.+.+.+ +.|.+++-.-+...-..|+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 333444455555555555555544444332222211 1234577777778887777754 44666676666666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC---ChhHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG---GFQSA 468 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g---~~~~A 468 (577)
-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++.+- +.| ++..+..+.+.+.-.| +.+-|
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll-----~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL-----IQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-----cCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888877777764 566888888888888888888888888885555 567 5556666666655444 45667
Q ss_pred HHHHHHHHH
Q 008097 469 SMLLVQMVG 477 (577)
Q Consensus 469 ~~~~~~m~~ 477 (577)
.+++.+..+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 888888764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=58.35 Aligned_cols=140 Identities=19% Similarity=0.169 Sum_probs=67.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHh----hh
Q 008097 278 IRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGF----CV 353 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~----~~ 353 (577)
...|.+.|++++|.+...... +......=+..+.+..+.+-|.+.+++|.+... ..+.+.|..++ .-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhcc
Confidence 344666666666666655422 111222222334444455555555555544321 11222222222 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
.+.+.+|.-+|++|.++ .+|+..+.|-+..++...|++++|..++++..... .-++.|...++..-.+.|...
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCCh
Confidence 33455666666666553 44556666666666666666666666666665432 224445444444444445443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.016 Score=59.89 Aligned_cols=419 Identities=14% Similarity=0.122 Sum_probs=217.1
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--c-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK--E-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
..+++..|....+...+. .|+. .|..++.+++. . ..++|..+++ .....+.. |..|...+-.+|.+.+..++
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 457888888888888663 3443 35666676654 3 7888888887 55444433 77888888888889999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhH----HHHHHHhccCCCceeHHHHHHHHHhc-CChH---------H
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGR----ARSLMSDMEEPNDVTFSILICAYCKE-ENLV---------N 165 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~---------~ 165 (577)
|..+|++..+. .|+......+..+|+|.+++.+ |.++++..++.--..|+ +++.+.+. ...+ -
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHH
Confidence 99999998875 4667777788888888887754 56666655544333444 34433322 1222 2
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHH-HHHHHcCCCCChhhHHHHHH
Q 008097 166 ALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFL-KEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 166 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~ 244 (577)
|.+.++.+.+.+ |.++...+++-...-....|.+++|+.++ ....+.-..-+...-+--+.
T Consensus 173 A~~m~~~~l~~~------------------gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 173 AEKMVQKLLEKK------------------GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHHHHHhccC------------------CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 233333333322 22222222222222223344455555544 22333222224444456677
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH----------------HHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG----------------LCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~----------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
.+...+++.+..++-.++...| +|. |...++. +...+.++...+...+.... . ..
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~--~---~R 305 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS--K---SR 305 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc--c---cc
Confidence 7888899999888888888775 232 3332222 22223344444433333322 0 22
Q ss_pred ccHHHHHHHHH---hcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh-------h
Q 008097 309 SPYNSVLYGLY---RENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV-------I 378 (577)
Q Consensus 309 ~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~ 378 (577)
.+|-+-+.++. .-|+.+++...|-+--. +-..+..=+..|..+=..+.-..+++..... .++.. .
T Consensus 306 gp~LA~lel~kr~~~~gd~ee~~~~y~~kfg---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 306 GPYLARLELDKRYKLIGDSEEMLSYYFKKFG---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQ 380 (932)
T ss_pred CcHHHHHHHHHHhcccCChHHHHHHHHHHhC---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHH
Confidence 23444333333 44777776554433222 1112222222333333333333333333321 11111 0
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHH---hCC------CCCCHH---------HHHHHHHHHHhcCCHHH---HHH
Q 008097 379 YDCLIHAYCQEE-----RVREASELMKEMT---GHG------YLPIAS---------TFNTVLSGLCRQGNVGT---ALK 432 (577)
Q Consensus 379 ~~~li~~~~~~g-----~~~~A~~~~~~m~---~~g------~~p~~~---------~~~~ll~~~~~~g~~~~---a~~ 432 (577)
+.+.+..-...| ..+.-..++.+.. ++| .-|+.. +.+.++..|.+.++... |+-
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~ 460 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAIT 460 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 222222222222 1223333333322 222 223322 34567778888777653 333
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+++..+. ..| |..+--.+|.+|+-.|-+..|.++++.+--+.+.-|...
T Consensus 461 LLE~glt-----~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlg 510 (932)
T KOG2053|consen 461 LLENGLT-----KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLG 510 (932)
T ss_pred HHHHHhh-----cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccch
Confidence 4442222 334 344445577888888888888888888865556555543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00086 Score=70.17 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=117.2
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
...+...+-.|.....+.|.+++|..+++...+..|+... ...+...+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3445677788888888889999999999998888887644 5566778888889999998888888752 2356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
..++.+.|++++|+.+|++....+ |+ ..++.++..++...|+.++|...|++.+.. ..|...-|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~----~~~~~~~~~~~~----- 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA----IGDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----hCcchHHHHHHH-----
Confidence 788888899999999999888733 44 667888888888889999998888865552 233344444332
Q ss_pred cCChhHHHHHHHHHH
Q 008097 462 KGGFQSASMLLVQMV 476 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~ 476 (577)
+++..-..+++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 34444556666664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.3e-06 Score=49.26 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 409 (577)
.+|++++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888777776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0011 Score=70.23 Aligned_cols=222 Identities=12% Similarity=0.077 Sum_probs=142.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHH-----------------HH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAF-----------------YR 69 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~-----------------~~ 69 (577)
|.+...+..|+..|...+++++|.++.+...+..+..-...|-..+ .+.+. ++.++..+ +.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 4567789999999999999999999999887754322222222222 33333 44444333 11
Q ss_pred HHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCcee
Q 008097 70 KKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVT 149 (577)
Q Consensus 70 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 149 (577)
..|...+ -+...+..+..+|-+.|+.+++.++++++++.. +-|+.+.|.+...|+.. ++++|++++.+...
T Consensus 107 ~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~----- 177 (906)
T PRK14720 107 DKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY----- 177 (906)
T ss_pred HHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH-----
Confidence 0111111 122456667788888999999999999999987 44888999999999999 99999999887653
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh-hhcCChhHHHHHHHHHH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ-GRLGKVKGGCRFLKEME 228 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~g~~~~a~~~~~~~~ 228 (577)
.|....++.++.+++.++....+ .|...+..+++.....-....+..++.-+... ....+++++..+++.+.
T Consensus 178 ------~~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 178 ------RFIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred ------HHHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 26777788888888888876532 23333344444333332233333333333222 44566777777777777
Q ss_pred HcCCCCChhhHHHHHHHHH
Q 008097 229 RKGCLPNVDTYNILISSYC 247 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~ 247 (577)
+.... |.....-++..|.
T Consensus 251 ~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 251 EHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hcCCc-chhhHHHHHHHHH
Confidence 75433 5555666666665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.4e-06 Score=48.89 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
.+|+.++++|++.|+++.|.++++.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00015 Score=59.65 Aligned_cols=102 Identities=15% Similarity=0.001 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
.....+...+...|++++|.+.|++....+ +.+...+..+...+.+.|++++|..++++.+. +.| +...+..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-----LDPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCChHHHHHH
Confidence 445555566667777777777777766533 22455566666666777777777777773333 233 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
..+|...|++++|...+++..+ ..|+...
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 7777777777777777777764 3454433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0068 Score=53.13 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=128.0
Q ss_pred CChhHHHHHHHHHHH---CC-CCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 250 GVLDSALDVFNDMKI---DG-ISWNFVT-YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 250 g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...-++ +..+-..-..-+-..|++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~---S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG---SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC---ChhHHHHHHHHHHHhhch
Confidence 456777777777653 23 4455443 445555666788888999888888776322 222211112234557889
Q ss_pred HHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|.++++.+.+..|.. +++---+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999988876644 44444455555667777888888888776 66799999999999999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHhhc
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQG---NVGTALKLVEEDMR 439 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~ 439 (577)
- +.| ++..|..+...+.-.| +.+-+.++|.+.++
T Consensus 182 l--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 L--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred H--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6 346 5666777777665544 45668888886665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0026 Score=56.06 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=52.5
Q ss_pred hhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 236 VDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 236 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
..+.+-|..++.+ .+...+|.-+|++|.+. .+|+..+.+-...++...|++++|..+++....++++ ++.+.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~---dpetL 244 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK---DPETL 244 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC---CHHHH
Confidence 3444444444443 34566777777777643 3566666666666667777777777777776665333 33343
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHhhc
Q 008097 312 NSVLYGLYRENQQDE-ALEYLKQMEKL 337 (577)
Q Consensus 312 ~~li~~~~~~g~~~~-A~~~~~~~~~~ 337 (577)
..++..-...|...+ ..+.+.++...
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 333333333343322 23344444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00026 Score=58.25 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
......+...+...|++++|...|+.+...+ +.+...+..+...+.+.|++++|...++...... +.+...+..+.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la 92 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAA 92 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHH
Confidence 3445556667777888888888888877653 4466777777777777888888888888776652 23555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..+...|++++|...|+...+..|+...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 7777778888888887777776665544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00044 Score=57.58 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLPIA--STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
+...+...|++++|...|++.......|+. .....+...+...|++++|+..++ ... .. ......+....++|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~-~~~--~~--~~~~~~~~~~Gdi~ 128 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQ-QIP--DE--AFKALAAELLGDIY 128 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-hcc--Cc--chHHHHHHHHHHHH
Confidence 334455556666666666655554311111 123334445555666666666655 333 22 22333455566666
Q ss_pred HHcCChhHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQ 474 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~ 474 (577)
.+.|++++|...|++
T Consensus 129 ~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 129 LAQGDYDEARAAYQK 143 (145)
T ss_pred HHCCCHHHHHHHHHH
Confidence 666666666665554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00027 Score=68.23 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
..+...++++.|..+|+++.+..|+. ...++..+...++-.+|.+++++.... .+.|...+..-...|.+.++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 33334445555555555554444332 222333333444444444444444432 112333333333344444444444
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+++.+++.+ ..|+.. +|..|..+|...|+++.|+..++
T Consensus 254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 444444443 223222 44444444444444444444444
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0002 Score=59.60 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=22.5
Q ss_pred cCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 249 TGVLDSALDVFNDMKIDGISWN---FVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+...
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 445555555555554431 111 111222334445555555555555555543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.6e-05 Score=45.97 Aligned_cols=31 Identities=39% Similarity=0.710 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.024 Score=54.06 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=241.7
Q ss_pred HhccCChhHHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHH--h
Q 008097 21 LGRARMINDVVKATDLVSRFN-MTP----SLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLC--L 93 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~--~ 93 (577)
+.+++++.+|..+|.++-+.. ..| ..+..+.+|++|..++.+.....+. .+.+. .| ...|..+..+.. +
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~-~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLM-ELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHH-HHHHh--cC-CchHHHHHHHHHHHH
Confidence 347899999999999985531 112 1455678889998887666665555 33332 23 334556665543 7
Q ss_pred cCCHhHHHHHHHHHHhC--CCCC------------CcchHHHHHHHHHhcCCHhHHHHHHHhccC--------CCceeHH
Q 008097 94 TNRVGDGFKLLHVMKSR--GVKP------------NSVIYNTLIHSLCKNGKVGRARSLMSDMEE--------PNDVTFS 151 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 151 (577)
.+.+++|.+.+...... +..| |-+.-+..++.+...|++.+++.+++++.+ .|..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999988777654 3222 222235677888999999999999999863 5777888
Q ss_pred HHHHHHHhcCChHHHHHHHHHH---HhCCCCCCHhhHHHHHHHHHhc---------CCHhHHHHHHHHHHHh---hhcCC
Q 008097 152 ILICAYCKEENLVNALVLLEKS---FSFGFVPDVVTITKVLELLCSV---------GRVMDAVEILEESGEQ---GRLGK 216 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m---~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~---~~~g~ 216 (577)
.++-.+.++ .|-++ ....+-|| |--++..|.+. ..+.-+.+++..+.+. .....
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~ 240 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKER 240 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhh
Confidence 755444332 11111 11222332 11222222211 0112223333333322 11111
Q ss_pred hhHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHcCCChHHHH
Q 008097 217 VKGGCRFLKEMERKGCLPNVD-TYNILISSYCETGVLDSALDVFNDMKIDGISW----NFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 217 ~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
..--.+++..-...-+.|+.. ....|+..+.+ +.+++..+-+.+....+.+ =..++..++....+.++...|.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~ 318 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAK 318 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 111222223333333445432 12233333333 5566665555554332111 2356788888899999999999
Q ss_pred HHHHHHHhccCCCCCC---cccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceeh-HHHHH---HhhhcCC-HHH
Q 008097 292 KILQLMEDSKEGSKGR---ISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDR-SLKIL---GFCVDGN-VED 359 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~---~~~~~g~-~~~ 359 (577)
+.+..+...+|+.... ..+-..+-+..+. ..+..+-+.+++.+...+.|..-. ..++. -+-+.|. -++
T Consensus 319 q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 319 QYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHH
Confidence 9988887653332110 0111223333331 112233344444444433222111 11111 2334454 788
Q ss_pred HHHHHHHHHHcCCCC-CHhhHHHHH----HHHHhc---CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHhcC
Q 008097 360 AKRCFDQMIEEGGVP-NVVIYDCLI----HAYCQE---ERVREASELMKEMTGHGYLPIA----STFNTVLSG--LCRQG 425 (577)
Q Consensus 360 A~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~--~~~~g 425 (577)
|.+++..+.+- .| |..+-|.+. .+|.+. ....+-+.+-+-..+.|+.|-. ..-|.+.+| +...|
T Consensus 399 alnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 399 ALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 89999888873 33 333333322 333332 2234444444445577887743 334444443 46789
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSL 490 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 490 (577)
++.++.-+-. .+. .+.|++.+|..+.-++....+++||..+++.++ |+..+|++-
T Consensus 477 ey~kc~~ys~-WL~----~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dsk 531 (549)
T PF07079_consen 477 EYHKCYLYSS-WLT----KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSK 531 (549)
T ss_pred cHHHHHHHHH-HHH----HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHH
Confidence 9999877766 444 388999999999999999999999999998874 566666553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00043 Score=66.85 Aligned_cols=123 Identities=18% Similarity=0.120 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhh
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFC 352 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 352 (577)
..+++..+...++++.|..+|+++.+. ++.....++..+...++..+|.+++.+..+..|.. .........+.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~------~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER------DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc------CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345566666677788888888887766 23345556677777777778888877777665544 22333445577
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.++.+.|..+.+++... .|+ ..+|..|..+|.+.|++++|+..++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888874 455 55999999999999999999998887763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.037 Score=54.00 Aligned_cols=452 Identities=11% Similarity=0.066 Sum_probs=262.2
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTP-SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
-|-|...|+.||+-+..+ ..+++++.++++... -| ....|..-|..-... +++....+|.+-+.+ ..+...|
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk---vLnlDLW 89 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK---VLNLDLW 89 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HhhHhHH
Confidence 467889999999998877 999999999999763 34 567899999988888 999999999944332 2356667
Q ss_pred HHHHHHHHh-cCCHhHH----HHHHHHH-HhCCCCCC-cchHHHHHHH---------HHhcCCHhHHHHHHHhccCC---
Q 008097 85 AILMKGLCL-TNRVGDG----FKLLHVM-KSRGVKPN-SVIYNTLIHS---------LCKNGKVGRARSLMSDMEEP--- 145 (577)
Q Consensus 85 ~~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~li~~---------~~~~g~~~~A~~~~~~~~~~--- 145 (577)
..-|.--.+ .+....+ .+.|+-. .+.|+.+- -..|+..+.. |....+++..++++.++...
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~ 169 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH 169 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc
Confidence 666654443 2333332 2233333 33454432 3346655554 34445677788888888742
Q ss_pred -------CceeHHHHHHHH-------HhcCChHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHH--HHHHHH
Q 008097 146 -------NDVTFSILICAY-------CKEENLVNALVLLEKSFS--FGFVPDVVTITKVLELLCSVGRVMDA--VEILEE 207 (577)
Q Consensus 146 -------~~~~~~~li~~~-------~~~~~~~~A~~~~~~m~~--~g~~~~~~~~~~ll~~~~~~g~~~~a--~~~~~~ 207 (577)
|-..|..=|+.. -+...+..|.++++++.. .|......+ .-..|-.++. .+++..
T Consensus 170 nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 170 NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKN 242 (656)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHH
Confidence 112222112111 123345566666666532 232222111 0001111111 112222
Q ss_pred HHHhhhcCChh-------H--HHHHHHH-HHHcCCCCChhhHHH-H----HHHHHhcCC-------hhHHHHHHHHHHHC
Q 008097 208 SGEQGRLGKVK-------G--GCRFLKE-MERKGCLPNVDTYNI-L----ISSYCETGV-------LDSALDVFNDMKID 265 (577)
Q Consensus 208 ~~~~~~~g~~~-------~--a~~~~~~-~~~~~~~p~~~~~~~-l----i~~~~~~g~-------~~~A~~~~~~m~~~ 265 (577)
.++..+.+-+. . ..-.+++ +.-.+..|++....+ . -+.+...|+ .+++..+++.....
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 22221111110 0 0011222 122233333321111 1 112233333 35566666665543
Q ss_pred CCCcCHHHHHHHHHHHH---cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC--C-
Q 008097 266 GISWNFVTYDTLIRGLC---SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF--P- 339 (577)
Q Consensus 266 g~~~~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p- 339 (577)
-..-+..+|..+.+.=- +-...+.....++++... .... -..+|..+++...+..-++.|..+|.++.+.. +
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~-~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h 400 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-EDID-LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH 400 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-hccC-CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc
Confidence 22334444444433211 111355556666666654 1222 34568888998889999999999999998742 3
Q ss_pred CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 008097 340 RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA--STFNTV 417 (577)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l 417 (577)
.....++++.-|| .++.+-|.++|+-=.+. ...++.--...++-+...++-..+..+|++....++.||. ..|..+
T Consensus 401 hVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~ 478 (656)
T KOG1914|consen 401 HVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRM 478 (656)
T ss_pred hhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHH
Confidence 4455666666665 57888999999987665 3334555567888888999999999999999988777765 479999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 418 LSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 418 l~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+.-=+.-|+...+.++-++.+........|...+-..+++-|.-.+....-..-++.|
T Consensus 479 l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 479 LEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988999999999998885555211114555556677888888777765544444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.046 Score=54.98 Aligned_cols=357 Identities=15% Similarity=0.100 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCC--------CcchHHHHHHHHHhcC
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSR-GVKP--------NSVIYNTLIHSLCKNG 130 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~g 130 (577)
..++|.+..+ -.|.+..|..+.......-.++.|+..|-+...- |++. +.....+=+.+| -|
T Consensus 678 gledA~qfiE-------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIE-------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG 748 (1189)
T ss_pred chHHHHHHHh-------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc
Confidence 5566666555 2577778877776666666666666666544321 2210 111112222222 48
Q ss_pred CHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 131 KVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
++++|++++-.+..+|. .|..+.+.|++-.+.++++.- |-..| ...|+.+...+.....+++|.+.+.
T Consensus 749 ~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred chhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999988877664 356667778887777766531 11111 3466777777777777777777654
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC
Q 008097 207 ESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR 286 (577)
Q Consensus 207 ~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 286 (577)
.- |+. ...+.++.+..++++-..+-..+ +-|...+-.+.+++.+.|.
T Consensus 821 ~~------~~~----------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGM 867 (1189)
T KOG2041|consen 821 YC------GDT----------------------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGM 867 (1189)
T ss_pred hc------cch----------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhch
Confidence 31 111 22344444444444444433333 3344455556666666666
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceeh--------------HHHHHHhh
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR--------------SLKILGFC 352 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--------------~~l~~~~~ 352 (577)
-++|.+.|-+.... .+.+..|...++|.+|.++-+..+- |...+. .--|..+.
T Consensus 868 C~qAV~a~Lr~s~p-----------kaAv~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~R 934 (1189)
T KOG2041|consen 868 CDQAVEAYLRRSLP-----------KAAVHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDR 934 (1189)
T ss_pred HHHHHHHHHhccCc-----------HHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhh
Confidence 66666655432211 2344556666666666665544321 111110 11234455
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 353 VDGNVEDAKRCFDQMIEE----GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
+.|..-+|.+++.+|.+. +.+|-..--..++.++. ..+..++++-.++...+|..-|... +...|..+
T Consensus 935 ka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~ 1006 (1189)
T KOG2041|consen 935 KAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLA 1006 (1189)
T ss_pred hcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhh
Confidence 666666666666666553 33322221112222221 1222334444444444443322211 22333344
Q ss_pred HHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK-GILPDYLTWNSLLIC 493 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~ 493 (577)
++-++.+ ..- --....|+..|..--...|..+.|++.--.+.+- .+-|...+|..|.-|
T Consensus 1007 ~~~ri~~-n~W-----rgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1007 EQSRILE-NTW-----RGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hHHHHHH-hhh-----hhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 4444444 111 0123455566666667788888888765555421 245666666655433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.6e-05 Score=45.01 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=24.3
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGF 178 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 178 (577)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00052 Score=54.86 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+..+..++.+.|+.++|.+.++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.024 Score=53.21 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=47.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCC-----CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGV-----PNVV-IYDCLIHAYCQEERVREASELMKEMTGH--GYLPI--ASTFNTV 417 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l 417 (577)
...+.+.|++++|..+|+++...... .+.. .|-..+-++...|++..|.+.|++.... ++..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 44466667777777777776654221 1111 2233344556678888888888887643 22222 3345666
Q ss_pred HHHHHh--cCCHHHHHHHHH
Q 008097 418 LSGLCR--QGNVGTALKLVE 435 (577)
Q Consensus 418 l~~~~~--~g~~~~a~~~~~ 435 (577)
+.+|-. ...+.++..-|+
T Consensus 242 ~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHc
Confidence 666643 334555555555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0067 Score=56.90 Aligned_cols=144 Identities=18% Similarity=0.143 Sum_probs=81.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhc-CCHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHh
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVD-GNVEDAKRCFDQMIEE----GGVPN--VVIYDCLIHAYCQ 388 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~ 388 (577)
..|...|++..|-..+..+-+ .|-.. |+++.|.+.|++..+. + .+. ..++..+...+.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~-------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAE-------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH-------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 346667777776666555433 34455 6777777777776554 1 111 3356677788999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC--cccHHHHHHHHH
Q 008097 389 EERVREASELMKEMTGHGYL-----PIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG--SGHYSPLIKALC 460 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~--~~~~~~li~~~~ 460 (577)
.|++++|+++|++....-.. ++.. .|...+-.+...|+...|.+.|++... .+.++..+ ......|++++-
T Consensus 168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~-~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS-QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT-TSTTSTTSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999998754322 2222 233334466778999999999994333 23333332 233444555553
Q ss_pred HcCC---hhHHHHHHHHH
Q 008097 461 EKGG---FQSASMLLVQM 475 (577)
Q Consensus 461 ~~g~---~~~A~~~~~~m 475 (577)
.|+ +++|..-|+.+
T Consensus 247 -~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -TT-CCCHHHHCHHHTTS
T ss_pred -hCCHHHHHHHHHHHccc
Confidence 344 44444444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00057 Score=54.64 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
+..+...+.+.|++++|...|..+..... +.....+..+...+.+.|+++.|...|+.+....++.+.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555666666666666666654311 0012344445566666666666666666665543332222334555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++.+.|+.++|...++++.+..|+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcC
Confidence 555556666665555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00077 Score=65.43 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=52.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
+......++..+....+.+++..++.+.... ....-..|..++++.|...|..++++.+++ .=. .+|+-||..++
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~-n~~--~yGiF~D~~s~ 141 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK-NRL--QYGIFPDNFSF 141 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh-Chh--hcccCCChhhH
Confidence 3444444444444444555555555554432 111112233455555555555555555555 222 35555555555
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+.|++.+.+.|++..|.++.-.|..++...+..+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t 175 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPST 175 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchH
Confidence 5555555555555555555555544444333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.058 Score=51.07 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=95.5
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+.+..+.-+...|....|.++-.+.. -|+..-|-..+.+|+..+++++-.++... . -.++-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 44555666677788888888766663 37888999999999999999887775432 1 23467888899999
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
..|...+|..++. .+. +..-+..|.+.|++.+|.+.--+.. |...+..+..-|..+...
T Consensus 249 ~~~~~~eA~~yI~-k~~------------~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~~~~~~~~~ 307 (319)
T PF04840_consen 249 KYGNKKEASKYIP-KIP------------DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILKRCPGNNDQ 307 (319)
T ss_pred HCCCHHHHHHHHH-hCC------------hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHHHCCCCChH
Confidence 9999999998888 322 3667888999999999988766664 666677776666554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.099 Score=53.25 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=62.0
Q ss_pred hCCCCCCcchH-----HHHHHHHHhcCCHhHHHHHHHhccCCC---ceeHHHHHHHHHhcCCh--HHHHHHHHHHHhCCC
Q 008097 109 SRGVKPNSVIY-----NTLIHSLCKNGKVGRARSLMSDMEEPN---DVTFSILICAYCKEENL--VNALVLLEKSFSFGF 178 (577)
Q Consensus 109 ~~g~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~ 178 (577)
..|++.+..-| ..+|+-+...+.+..|+++-..+..|- ...|.....-+.+..+. +++++..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 34665555544 346777888899999999998888765 34455555666665332 344444443333222
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEE 207 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 207 (577)
-...+|..+.+--...|+++.|..+++.
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3456777777777788888888887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00067 Score=60.89 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=58.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~ 429 (577)
..+.+++.+|+..|.+.++. .+.|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45666677777777776664 223555566666667777777777666666665 34543 356666666777777777
Q ss_pred HHHHHHHhhcccCCCCCCCcccHH
Q 008097 430 ALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
|.+.|++.+. +.|+-++|-
T Consensus 168 A~~aykKaLe-----ldP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALE-----LDPDNESYK 186 (304)
T ss_pred HHHHHHhhhc-----cCCCcHHHH
Confidence 7766665554 666555443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=50.27 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=60.7
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGG-VPNVVIYDCLIHAYCQEE--------RVREASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4455566888888899999998888 789999999988877643 3456778888888888999999999888
Q ss_pred HHHHh
Q 008097 419 SGLCR 423 (577)
Q Consensus 419 ~~~~~ 423 (577)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 77654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=49.76 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
|..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++.+. ..| +...+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-----LDPDNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchhHHHHHHH
Confidence 3445555666666666666666665532 12234455556666666666666666663333 223 3345666666
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...|++++|...+++..
T Consensus 77 ~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 77 AYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 6666666666666666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0014 Score=63.73 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=49.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..+++..++..=..- |+-||..++|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y--GiF~D~~s~n 142 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY--GIFPDNFSFN 142 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc--ccCCChhhHH
Confidence 4444444455444455555555555555433 11111223345555555555555555555544433 5555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 008097 313 SVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
.||+.+.+.|++..|.++...|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH
Confidence 55555555555555555555543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=50.10 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 151 SILICAYCKEENLVNALVLLEKSFSFGF-VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 151 ~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+.+ +.+...+.+++.|..
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie-----------~kl~~LLtvYqDiL~ 97 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE-----------NKLTNLLTVYQDILS 97 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-----------HHHHHHHHHHHHHHH
Confidence 3456667777999999999999999999 9999999999998876432211111 112233445556666
Q ss_pred cCCCCChhhHHHHHHHHH
Q 008097 230 KGCLPNVDTYNILISSYC 247 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~ 247 (577)
.+++|+..+|+.++..+.
T Consensus 98 ~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 98 NKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hccCCcHHHHHHHHHHHH
Confidence 666666666666655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.018 Score=52.33 Aligned_cols=173 Identities=9% Similarity=0.018 Sum_probs=94.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCH-HHH---HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNF-VTY---DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
....+...|++++|...|+++... -|+. ..- -.+..+|.+.+++++|...+++..+..|+.+- ..+...+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--IDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--hHHHHHHHH
Confidence 344455677777777777777664 2222 221 34456677777777777777777766443321 122222222
Q ss_pred HHh--c---------------CC---HHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh
Q 008097 318 LYR--E---------------NQ---QDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV 377 (577)
Q Consensus 318 ~~~--~---------------g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 377 (577)
.+. . .+ ..+|+..|+.+.+..|+.. -..+|...+..+... =..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~-------------ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ-------------YTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh-------------hHHHHHHHHHHHHHH----HHH
Confidence 211 1 11 2345566666666666542 233444333333221 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGH--GYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.--.+..-|.+.|.+..|+.-++.+++. +.+........+..+|...|..++|..+..
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1124455677777777777777777753 112233456667777888888888777665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=49.68 Aligned_cols=96 Identities=19% Similarity=0.180 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD---PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHHHHHH
Confidence 4455566667777777777777776542 2234556666677777777777777777766542 11334566666666
Q ss_pred HhcCCHHHHHHHHHHHhhcC
Q 008097 319 YRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~ 338 (577)
...|++++|...+....+..
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 79 YKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHhHHHHHHHHHHHHccC
Confidence 66777777766666665543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0028 Score=61.49 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=50.5
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 428 (577)
.+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++. .| +...|..+..+|.+.|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 4455566666666666666542 224555556666666666666666666666653 23 3445555556666666666
Q ss_pred HHHHHHHHhhc
Q 008097 429 TALKLVEEDMR 439 (577)
Q Consensus 429 ~a~~~~~~~m~ 439 (577)
+|...|++.+.
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666664444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=56.88 Aligned_cols=91 Identities=20% Similarity=0.297 Sum_probs=51.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
+.|.++=....+..|.+-|+..|..+|+.|++.+=+ |.+ .|.. .|.++..-| -.+.+-|++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n-~fQ~~F~hy--p~Qq~c~i~ 124 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRN-FFQAEFMHY--PRQQECAID 124 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------cccc-HHHHHhccC--cHHHHHHHH
Confidence 346666677777777777777777777777776643 211 0110 011111001 123455666
Q ss_pred HHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh
Q 008097 433 LVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~ 465 (577)
+++ .|+ .+|+.||.+++..+++.+++.+..
T Consensus 125 lL~-qME--~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLE-QME--NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHH-HHH--HcCCCCcHHHHHHHHHHhccccHH
Confidence 666 666 666666666666666666666653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0016 Score=58.59 Aligned_cols=99 Identities=21% Similarity=0.219 Sum_probs=81.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 393 (577)
.-..+.+++.+|+..|.++.++.|.. +-|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 45778899999999999999988754 55566788899999999999999988873 444 568999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
+|++.|++.++ +.|+-.+|-.=|
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999999987 679887765433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0022 Score=59.90 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C----CceeHHHHHHHHHhcCChHHHHH
Q 008097 95 NRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P----NDVTFSILICAYCKEENLVNALV 168 (577)
Q Consensus 95 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~~~~~~A~~ 168 (577)
++.+.|.++|+...+. +..+...|...++.+.+.|+.+.|+.+|++... + -...|...+..=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555543 334455555555555555555555555555543 1 12355555555555566666666
Q ss_pred HHHHHHh
Q 008097 169 LLEKSFS 175 (577)
Q Consensus 169 ~~~~m~~ 175 (577)
+.+++..
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0032 Score=58.77 Aligned_cols=94 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
.+.|..+|+...+..|. ...|...++.+.+.++.+.|..+|++.... +.++ ...|...+.-=.+.|+.+.+.++.
T Consensus 52 ~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 52 PKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344444444443222 233344444444555555555555555543 2221 236666666666777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHH
Q 008097 400 KEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~ 420 (577)
+++.+. -|+...+..+.+-
T Consensus 131 ~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 131 KRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHH--hhhhhHHHHHHHH
Confidence 766652 3443344334433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0073 Score=61.33 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 412 STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 412 ~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
..+..+.-.....|++++|...+++.+. +.|+...|..+...+...|+.++|.+.+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~-----L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAID-----LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344433333344555555555554333 33444555555555555555555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0046 Score=60.00 Aligned_cols=99 Identities=16% Similarity=0.079 Sum_probs=55.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+...|++++|+..|.++.+..|+. ..+..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445556666666666655554432 234444455566666666666666666542 22455666666666677777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPIASTFNTVL 418 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~~~~~~~ll 418 (577)
+..|++.++ +.|+...+...+
T Consensus 90 ~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 90 KAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHH--hCCCCHHHHHHH
Confidence 777776665 335544444333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.057 Score=53.83 Aligned_cols=265 Identities=13% Similarity=0.131 Sum_probs=128.9
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHH
Q 008097 79 GDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYC 158 (577)
Q Consensus 79 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 158 (577)
|-...+.+-+-.+...|.+++|.++-. .|+ ...-|..|..-....=+++-|++.+.+...
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac----lgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC----LGV--TDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc----cce--ecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 334445555556667777777655421 121 222344444444444455555555544332
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 159 KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
-.+-+-+.-++++++.|-.|+.... ...|+-.|++.+|.++|. ++|.-..|.++|..|.--
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk------~~G~enRAlEmyTDlRMF-------- 674 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFK------RSGHENRALEMYTDLRMF-------- 674 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHH------HcCchhhHHHHHHHHHHH--------
Confidence 2233444456677777777776543 344566788888888874 467777777777655431
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CcCHHHHHHHHHHHHcCCChHHHHHH-------------HHHHHhccC
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID--GI-SWNFVTYDTLIRGLCSGGRIDDGLKI-------------LQLMEDSKE 302 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~~~~~~~~~ll~~~~~~g~~~~a~~~-------------~~~~~~~~~ 302 (577)
-...-|...|..++-..+.++=.+- .+ +|- +...++...|+.++|..+ -.++...
T Consensus 675 --D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~-- 745 (1081)
T KOG1538|consen 675 --DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKA-- 745 (1081)
T ss_pred --HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchh--
Confidence 1233444555554444333321110 01 111 122223334444444333 2222211
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh----
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI---- 378 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---- 378 (577)
+..+...+..-+.+...+.-|.++|.+|-.. ..++......+++.+|..+-++..+ ..||+..
T Consensus 746 ----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 ----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQ 812 (1081)
T ss_pred ----hhhHHHHHHHHHhhccccchHHHHHHHhccH-------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHH
Confidence 2233333333444445555566666655331 3345555566666666666666554 2333221
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 379 -------YDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 379 -------~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+.-.-.+|.+.|+-.||.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12222355556666666666666543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.042 Score=49.98 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=29.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008097 243 ISSYCETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
..-|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455666666666666666543 22223344455556666666666666555444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00052 Score=50.84 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA-STFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~ 432 (577)
|+++.|+.+|+++.+.... ++...|-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555553211 1233344455555566666666666555 21 11221 222233445555566666655
Q ss_pred HHH
Q 008097 433 LVE 435 (577)
Q Consensus 433 ~~~ 435 (577)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0055 Score=50.22 Aligned_cols=88 Identities=11% Similarity=-0.047 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~ 459 (577)
+..-+...|++++|..+|+-+.. +.| +..-|..|.-.|...|++++|+..|..... +.| ++..+-.+..++
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-----L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-----IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCchHHHHHHHHH
Confidence 33444556666666666666554 234 233345555555566666666666663333 334 555566666666
Q ss_pred HHcCChhHHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQMV 476 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m~ 476 (577)
...|+.+.|.+.|+...
T Consensus 114 L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 114 LACDNVCYAIKALKAVV 130 (157)
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666665554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.006 Score=52.26 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=25.0
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVP--NVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+...|++++|...|++.......| ...+|..+...|...|++++|++.+++...
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444321111 123455555555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.012 Score=46.48 Aligned_cols=93 Identities=23% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA 458 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~ 458 (577)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+|++.+. .+.-.+ +......+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHH
Confidence 34455666777777777777776665543 22455566677777777777777774444 211100 12222233445
Q ss_pred HHHcCChhHHHHHHHHHH
Q 008097 459 LCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 459 ~~~~g~~~~A~~~~~~m~ 476 (577)
+...|+.++|.+.+-...
T Consensus 85 L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666777777777665543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.01 Score=51.08 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+++.+. +.| +...+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l 112 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-----LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHH
Confidence 44444444445555555555555443221111 12344444445555555555555553333 223 23334444
Q ss_pred HHHHHHcCC--------------hhHHHHHHHHHH
Q 008097 456 IKALCEKGG--------------FQSASMLLVQMV 476 (577)
Q Consensus 456 i~~~~~~g~--------------~~~A~~~~~~m~ 476 (577)
..+|...|+ +++|.+.+++..
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 444444443 456666666665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=50.57 Aligned_cols=90 Identities=14% Similarity=0.010 Sum_probs=55.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.....+. +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK---QPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHH
Confidence 34456666677777888888888887765432221 345666677777777777777777777664221 3444555
Q ss_pred HHHHHHhcCCHHHHH
Q 008097 314 VLYGLYRENQQDEAL 328 (577)
Q Consensus 314 li~~~~~~g~~~~A~ 328 (577)
+...+...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 555555555544433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.19 Score=47.31 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=186.2
Q ss_pred eHHHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 149 TFSILICAYC--KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 149 ~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.|.+|-.++. -.|+-..|.++-.+..+. +..|......++.+-.. .-.|+.+.|++-|+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaa-----------------l~eG~~~~Ar~kfeA 145 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAA-----------------LLEGDYEDARKKFEA 145 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHH-----------------HhcCchHHHHHHHHH
Confidence 3445555544 357777777766554321 33444445555543322 122444444555566
Q ss_pred HHHcCCCCChhhHHH----HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 227 MERKGCLPNVDTYNI----LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
|.. |..+-.. |.-.--+.|..+.|...-.+.-..- +--...+.+.+...+..|+++.|+++++.-....
T Consensus 146 Ml~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~- 218 (531)
T COG3898 146 MLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK- 218 (531)
T ss_pred Hhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-
Confidence 655 3333222 2222335688888887777765442 2234667788888888999999999888665431
Q ss_pred CCCCCccc--HHHHHHHH---HhcCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 303 GSKGRISP--YNSVLYGL---YRENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 303 ~~~~~~~~--~~~li~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
.+.++..- -..|+.+- .-..+...|...-.+..+..|+.+.-..+ ..++.+.|++.++-.+++.+-+.. |.+
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP 296 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHP 296 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CCh
Confidence 22223221 22233222 12345777888888888888887664443 457899999999999999999864 444
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTG-HGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
..+. .|.+..-.+.++.-+++..+ ..++|| ......+..+-...|++..|..--+.... ..|....|..
T Consensus 297 ~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-----~~pres~~lL 367 (531)
T COG3898 297 DIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-----EAPRESAYLL 367 (531)
T ss_pred HHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-----hCchhhHHHH
Confidence 4443 33333333455555554432 125664 45677788888899999998877773333 6899999999
Q ss_pred HHHHHHHc-CChhHHHHHHHHHHHCCCCCC
Q 008097 455 LIKALCEK-GGFQSASMLLVQMVGKGILPD 483 (577)
Q Consensus 455 li~~~~~~-g~~~~A~~~~~~m~~~~~~p~ 483 (577)
|.+.-... |+-.++...+-+....+-.|+
T Consensus 368 lAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 368 LADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 99987766 999999999999886655553
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00047 Score=51.09 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.|+++.|+.+++++.+..|+ ...+..+..+|.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666665442 22333356666677777777777766 22111 223334455677788888888888
Q ss_pred HHHH
Q 008097 398 LMKE 401 (577)
Q Consensus 398 ~~~~ 401 (577)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0054 Score=56.24 Aligned_cols=100 Identities=16% Similarity=0.070 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNF----VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|..+....++.+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445556777777777776654 2332 3455566666667777777777776665533333333344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
...+...|+.++|..+|+++.+..|+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 55555666666666666666555554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.24 Score=50.14 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHh-hcCCCCCHhhHHH----H--HHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 008097 43 TPSLKIFNSILDVLVKE-DIDLARAFYRKKMM-ASGVQGDDYTYAI----L--MKGLCLTNRVGDGFKLLHVMKSRGVKP 114 (577)
Q Consensus 43 ~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~-~~~~~~~~~~~~~----l--l~~~~~~~~~~~a~~~~~~~~~~g~~~ 114 (577)
.|....|..+...-.+. .++-|...|- ... -.|++.--..-.. + ...-+--|.+++|++++-++-++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFV-rc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFV-RCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhh-hhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 47788898887766666 8888888887 332 2233210000000 0 011122588999999988876643
Q ss_pred CcchHHHHHHHHHhcCCHhHHHHHHHhccCC-----CceeHHHHHHHHHhcCChHHHHHHHHH
Q 008097 115 NSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-----NDVTFSILICAYCKEENLVNALVLLEK 172 (577)
Q Consensus 115 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~ 172 (577)
..|.++.+.|++-+..++++.-... -...|+.+...++....+++|.+.|..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777888887777777653321 123566666666666666666655543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.012 Score=59.70 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEE-GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 358 ~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
..+.+...+.... ..+.+...|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|...+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 123345667777666667788888888888888743 7777788888888888888888888886
Q ss_pred hhcccCCCCCCCcccHH
Q 008097 437 DMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 437 ~m~~~~~~~~p~~~~~~ 453 (577)
.+. +.|...+|.
T Consensus 479 A~~-----L~P~~pt~~ 490 (517)
T PRK10153 479 AFN-----LRPGENTLY 490 (517)
T ss_pred HHh-----cCCCCchHH
Confidence 666 667655554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.042 Score=45.87 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=90.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
.|++..--.|..+....|+..+|...|++...--..-|....-.+.++....+++..|...++.+-+..+... ++.+-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r-~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR-SPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC-CCCchH
Confidence 4666667777888888888888888888877554556777777777888888888888888887766432211 233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQ 366 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (577)
.+...+...|.+.+|..-|+......|+..........+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 556677777777777777777777666665555555556666666655443333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.052 Score=45.36 Aligned_cols=101 Identities=14% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYS 453 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~ 453 (577)
|++..--.+..+....|++.||...|++...--+.-|......+.++....+++.+|...+++.|+....+- ++..--
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--CCCchH
Confidence 444444444445555555555555555544322233444444455555555555555555553333100011 222333
Q ss_pred HHHHHHHHcCChhHHHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...|...|+..+|...|+...
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH
Confidence 34444555555555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.052 Score=54.07 Aligned_cols=217 Identities=18% Similarity=0.225 Sum_probs=103.8
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCC--ceeHHH-----HHHHHHhcCChHHHHHHHHHHHhC
Q 008097 104 LHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPN--DVTFSI-----LICAYCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 104 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~ 176 (577)
++++.++|-.|+... +...++-.|++.+|.++|.+-...| ...|+- ...-|...|..++-..+.++-.+.
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W 699 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW 699 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Confidence 455666666565543 2334455566667766666544321 111111 122233344444333333221110
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH
Q 008097 177 GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL 256 (577)
Q Consensus 177 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 256 (577)
..|..-=......+...|+.++|..+. ...|-.+-+.++-..+... +..+...+..-+.+...+..|.
T Consensus 700 --Ar~~kePkaAAEmLiSaGe~~KAi~i~------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 700 --ARNIKEPKAAAEMLISAGEHVKAIEIC------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred --hhhcCCcHHHHHHhhcccchhhhhhhh------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHH
Confidence 000000012233444556666665553 1222223333332222222 3334444444444556667777
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 257 DVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 257 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
++|..|-. ..++++.....+++++|..+-+...+. .+| +|.....-++...++++|.+.|
T Consensus 768 eIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~d--Vy~pyaqwLAE~DrFeEAqkAf----- 827 (1081)
T KOG1538|consen 768 EIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDD--VYMPYAQWLAENDRFEEAQKAF----- 827 (1081)
T ss_pred HHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----ccc--ccchHHHHhhhhhhHHHHHHHH-----
Confidence 77776642 234566667777777777766655432 223 2333344455555666665444
Q ss_pred cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc
Q 008097 337 LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 337 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
-+.|+-.+|.++++++...
T Consensus 828 ---------------hkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 828 ---------------HKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---------------HHhcchHHHHHHHHHhhhh
Confidence 4557788888888887653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0075 Score=51.66 Aligned_cols=64 Identities=17% Similarity=0.018 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
.|..+...+...|++++|...|+......+.......+|..+...+...|++++|+..+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555443111100112344444444444444444444444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.5 Score=49.47 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=127.7
Q ss_pred HHHHHHHH--hccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 14 FITVIRGL--GRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 14 ~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
|...+.++ .|.|+.++|..+++.....+.. |..+...+-..|... +.++|..+|++ .. +.-|+..-...+..+
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~-~~--~~~P~eell~~lFma 119 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYER-AN--QKYPSEELLYHLFMA 119 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHH-HH--hhCCcHHHHHHHHHH
Confidence 33444444 5899999999888887654433 777888888888887 99999999993 32 345777777788889
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCC----------HhHHHHHHHhccCCC--cee---HHHHHH
Q 008097 91 LCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK----------VGRARSLMSDMEEPN--DVT---FSILIC 155 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~--~~~---~~~li~ 155 (577)
|.|.+++.+-.++--++-+. ++.+.+.+=++++.+...-. ..-|.+.++.+.+.+ ..+ .-.-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 99998888776666666553 45567777777777665422 234666666666533 111 112223
Q ss_pred HHHhcCChHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 156 AYCKEENLVNALVLLE-KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~-~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
.+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 4556788999999884 3333333334445556667777788888777776665554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0054 Score=52.78 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 361 KRCFDQMIEEGGVPNVVIYDCLIHAYCQE-----ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 361 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
...|++... -..|..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 445555422 246888888888888754 6778888888999999999999999999987765 3322 334455
Q ss_pred HhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchH
Q 008097 436 EDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTW 500 (577)
Q Consensus 436 ~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 500 (577)
.+- .-.| .+-+-|++++++|...|+.||..++..|++.+.+.+..
T Consensus 110 -~~F----~hyp---------------~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 110 -AEF----MHYP---------------RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred -HHh----ccCc---------------HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 333 0111 23466889999999999999999999999999887763
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0092 Score=48.95 Aligned_cols=85 Identities=9% Similarity=-0.008 Sum_probs=36.4
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 359 (577)
+...|++++|..+|+.+...++. +..-|-.|..++-..|++++|+..+.......|+ +..+-.+...+.+.|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 33445555555555544443111 2333444444444444444444444444443332 2233333334444444444
Q ss_pred HHHHHHHHH
Q 008097 360 AKRCFDQMI 368 (577)
Q Consensus 360 A~~~~~~~~ 368 (577)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.03 Score=52.77 Aligned_cols=153 Identities=16% Similarity=0.094 Sum_probs=96.5
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH--HHHHhcCCHHHHHHHHHHHhhcCCCceehHH-----------
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL--YGLYRENQQDEALEYLKQMEKLFPRAVDRSL----------- 346 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----------- 346 (577)
.+.-.|+.++|..+-..+.+.+. ...+...+ .++.-.++.+.|...|++.....|+......
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~-----~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA-----TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc-----chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 34556777777776666655421 11222222 2334456677777777777777665433221
Q ss_pred --HHHHhhhcCCHHHHHHHHHHHHHc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 008097 347 --KILGFCVDGNVEDAKRCFDQMIEE---GGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSG 420 (577)
Q Consensus 347 --l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~ 420 (577)
-.....+.|.+..|.+.|.+.+.. +..|+...|-....+..+.|+..+|+.--++... +.|... .+..-..+
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c 330 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANC 330 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHH
Confidence 133456789999999999988874 3445566677777778889999999988887765 223211 12222334
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 008097 421 LCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~ 439 (577)
+...+++++|.+-|++.|+
T Consensus 331 ~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567889999999997777
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.031 Score=49.43 Aligned_cols=165 Identities=13% Similarity=0.168 Sum_probs=73.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH----
Q 008097 245 SYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL---- 318 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~---- 318 (577)
.+...|++++|...|+.+..... +--....-.++.++.+.|+++.|...++...+..|..+- ..+...+.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~--~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK--ADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--hhhHHHHHHHHHHH
Confidence 34555666666666666554311 111223334555566666666666666665554322211 1111111111
Q ss_pred ---------HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 319 ---------YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 319 ---------~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
...+...+|...|+.+.+..|+. .-..+|......+... =...--.+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S-------------~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYPNS-------------EYAEEAKKRLAELRNR----LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-TTS-------------TTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCcCc-------------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 11122345566666665555543 2333444333333321 011112245566667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008097 390 ERVREASELMKEMTGHGYLPIA----STFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a 430 (577)
|.+..|..-++.+++. -|+. .....++.++.+.|..+.+
T Consensus 155 ~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp T-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777766653 2332 2345566666677766644
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.033 Score=44.01 Aligned_cols=90 Identities=20% Similarity=0.173 Sum_probs=48.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++......++.+.+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455566777777777777777665543 23444555666777777777777776665422211111122222234444
Q ss_pred cCCHHHHHHHHH
Q 008097 321 ENQQDEALEYLK 332 (577)
Q Consensus 321 ~g~~~~A~~~~~ 332 (577)
.|+.++|++.+-
T Consensus 88 ~gr~~eAl~~~l 99 (120)
T PF12688_consen 88 LGRPKEALEWLL 99 (120)
T ss_pred CCCHHHHHHHHH
Confidence 555555555443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.051 Score=49.43 Aligned_cols=114 Identities=18% Similarity=0.101 Sum_probs=85.5
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcccCCCCCC-C
Q 008097 373 VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG---NVGTALKLVEEDMRGIGRGSLP-G 448 (577)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~~~~~~~~p-~ 448 (577)
+-|...|-.|...|...|+++.|..-|.+..+.. .+|...+..+..++..+. ...++..+|++.+. ..| |
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-----~D~~~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-----LDPAN 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh-----cCCcc
Confidence 4578899999999999999999999999988632 345566666666664433 36678888986555 456 6
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICL 494 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 494 (577)
+.....|...+...|++++|...|+.|.+. -|....|..++..-
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 777888888899999999999999999854 44444677776553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0033 Score=44.41 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
|..+...+...|++++|+..|++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333344444444444444333
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.003 Score=43.99 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHH
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
+..+..++...|++++|...|+.+
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.058 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=70.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---CChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG---GRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
|...|-.|-..|...|+++.|..-|.+..+.- ++|...+..+..++... ....++.++|+++...++. ++.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~---~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA---NIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc---cHHHH
Confidence 67778888888888888888888887776642 33444444444443322 2345677777777765333 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL 349 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (577)
..|...+...|++.+|...|+.|.+..|....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 66666777777777777777777776665555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0048 Score=43.54 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhc
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG-NVGTALKLVEEDMR 439 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~m~ 439 (577)
+..+|..+...+...|++++|+..|++.++. .| +...|..+..++...| ++++|++.+++.+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666666666777777777777776663 34 3345666666666666 56677666664443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0024 Score=44.95 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=6.6
Q ss_pred HHHHHHcCCChHHHHHHHH
Q 008097 277 LIRGLCSGGRIDDGLKILQ 295 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~ 295 (577)
+..+|.+.|++++|.++++
T Consensus 31 la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3333333333333333333
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0048 Score=42.91 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=28.8
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.+.+.|++++|...|+++++.. +-+...|..+..++.+.|++++|...|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555542 22445555555666666666666666666554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0046 Score=43.44 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTF 414 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 414 (577)
+.|++++|.+.|+++.... +-+...+..+..+|.+.|++++|.++++++... .|+...+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 3455566666666655542 225555556666666666666666666666653 3554333
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.025 Score=53.23 Aligned_cols=130 Identities=16% Similarity=0.103 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhc---CC----CceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKL---FP----RAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GG-VPNVV 377 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~ 377 (577)
.|..|...|.-.|+++.|+...+.-..+ .- ....++.+..++.-.|+++.|.+.|...... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3555556666677788877665543321 11 1233455666677778888888777765432 11 12345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG----HG-YLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+.-++...|.-...+++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.++.++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566778888888888999888876542 11 112345778888999999999999888775444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=52.23 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=41.0
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCce----ehHHHHHHhhhcCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHhcCCH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAV----DRSLKILGFCVDGNVEDAKRCFDQMIEE--GGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.+.|++++|...|+.+.+..|+.. .+.-+...|...|++++|...|+.+.+. +.+.....+-.+...|...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555555444432 2333444445555555555555555443 1111123333344445555556
Q ss_pred HHHHHHHHHHHh
Q 008097 393 REASELMKEMTG 404 (577)
Q Consensus 393 ~~A~~~~~~m~~ 404 (577)
++|..+|++.++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666666555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.23 Score=47.09 Aligned_cols=275 Identities=11% Similarity=-0.065 Sum_probs=156.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHH
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKI 293 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~ 293 (577)
..+.+|+..+....+..+. +..-|..-...+...|++++|.--.+.-.+. +| ......-.-+.+...++..+|.+.
T Consensus 63 k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 63 KTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred hhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHHHHHHH
Confidence 3344444445555554333 4555666666777778888877666554432 11 111222222223333333333322
Q ss_pred HH------------HHHhccC--CCCCCcccHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH--HhhhcCC
Q 008097 294 LQ------------LMEDSKE--GSKGRISPYNSVL-YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL--GFCVDGN 356 (577)
Q Consensus 294 ~~------------~~~~~~~--~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~ 356 (577)
++ .....-+ ..+|....|..+- .++.-.|+.++|.+.--...+..+.... ..++. .+--.++
T Consensus 140 ~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~-al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 140 LKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE-ALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH-HHHhcccccccccc
Confidence 22 1111100 1112223333332 3456678888888887777765443222 22222 3445688
Q ss_pred HHHHHHHHHHHHHcCCCCCHhh-------------HHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVVI-------------YDCLIHAYCQEERVREASELMKEMTG---HGYLPIASTFNTVLSG 420 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~ 420 (577)
.+.|...|++.+.. .|+... |.-=..-..+.|++.+|.+.+.+.+. .+++|+...|.....+
T Consensus 219 ~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 219 ADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 89999999998874 344332 22223344678999999999999985 2344555667777777
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
..+.|+.++|+.--+..+. +.| =+..|..-..++.-.++|++|.+-+++..+..-.+. ..+|....-++.+..
T Consensus 297 ~~rLgrl~eaisdc~~Al~-----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK-----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred hcccCCchhhhhhhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 8899999999988884444 444 233444445556667889999999998875433332 356666666665444
Q ss_pred hH
Q 008097 499 TW 500 (577)
Q Consensus 499 ~~ 500 (577)
..
T Consensus 372 Rk 373 (486)
T KOG0550|consen 372 RK 373 (486)
T ss_pred hh
Confidence 43
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.55 Score=44.58 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
.+.+..|.-+...|+...|.++-.+.. -|+..-|-..+.+++..+++++-.++... + -++.-|..++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k------KsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K------KSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C------CCCCChHHHHH
Confidence 345555666777777777777766654 46777777888888888887776654321 1 14566777788
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
.|.+.|+..+|..+...+ .+..-+..|.++|++.+|.+.-
T Consensus 246 ~~~~~~~~~eA~~yI~k~--------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI--------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHCCCHHHHHHHHHhC--------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888888777777776552 2245566677777777665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.16 Score=44.94 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=43.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
....+...|++.+|.+.|+.+...-++.+-.....-.++.++.+.|+++.|...+++..+..|+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 33445667888888888888887654444344456667777888888888888888887776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.26 Score=40.51 Aligned_cols=126 Identities=10% Similarity=0.140 Sum_probs=85.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh
Q 008097 14 FITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILMKGLCL 93 (577)
Q Consensus 14 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 93 (577)
...++..+...+.+..+...++.+.+.+. .+....|.++..|++.+....++.+. . ..+.+....+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~-~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLD-N------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHH-h------ccccCCHHHHHHHHHH
Confidence 35677777778889999999999877663 67778899999998777677766665 1 2344556667888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CCHhHHHHHHHhccCCCceeHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKN-GKVGRARSLMSDMEEPNDVTFSILICAYC 158 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 158 (577)
.+-++++.-++.++.. +...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 8877777777766522 22334444444 6777777777663 24446666665554
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.23 Score=40.91 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=86.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR 423 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 423 (577)
...++..+...+........++.+...+. .+....|.++..|++.+. .+.++.++. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666666777777777777777653 577788899999987643 445555542 1334445567888999
Q ss_pred cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008097 424 QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEK-GGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 496 (577)
Q Consensus 424 ~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 496 (577)
.+.++++..++. .+. -|...++.+... ++++.|.+++++-. ++..|..++..|..
T Consensus 82 ~~l~~~~~~l~~-k~~-----------~~~~Al~~~l~~~~d~~~a~~~~~~~~------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYK-KDG-----------NFKDAIVTLIEHLGNYEKAIEYFVKQN------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHH-hhc-----------CHHHHHHHHHHcccCHHHHHHHHHhCC------CHHHHHHHHHHHHc
Confidence 999998888888 443 244455556655 88888888887631 66688888877643
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.061 Score=42.96 Aligned_cols=56 Identities=18% Similarity=0.077 Sum_probs=43.7
Q ss_pred CCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhc
Q 008097 442 GRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVG-KGILPDYLTWNSLLICLSQQ 497 (577)
Q Consensus 442 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~ 497 (577)
.....|+..+..+++.+|+..|++..|.++++...+ -+++-+..+|..|+.-+...
T Consensus 45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 445678888889999999999999999998888774 35666678898888776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.052 Score=45.14 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT-----GHGYLPIAST 413 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~ 413 (577)
..+...|+++.|..+.+.+... .+-|...|..+|.+|...|+..+|++.|+++. +.|+.|+..+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555555555555554 22345555556666666666666655555543 2355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.2 Score=43.00 Aligned_cols=83 Identities=8% Similarity=0.017 Sum_probs=65.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--CCceeHHHHHH
Q 008097 78 QGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--PNDVTFSILIC 155 (577)
Q Consensus 78 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 155 (577)
+.|..+|-.|+.-+...+..++..+++++|..- ++--..+|..-+++-....+++..+.+|.+... -+...|...+.
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~ 117 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLE 117 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHH
Confidence 457889999999999999999999999999763 344556787778777778899999999998775 46777887776
Q ss_pred HHHhcC
Q 008097 156 AYCKEE 161 (577)
Q Consensus 156 ~~~~~~ 161 (577)
.--+.+
T Consensus 118 YIRr~n 123 (660)
T COG5107 118 YIRRVN 123 (660)
T ss_pred HHHhhC
Confidence 554433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.035 Score=39.53 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|.+.+++++|.++++.+...+|. +...|.....++.+.|++++|.+.|+...+..|
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD---DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc---cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34444444444444444443211 333344444444444444444444444444333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.05 Score=38.72 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=31.9
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.|.+.+++++|.++++.+...+ +.+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455556666666666665542 22455556666666666666666666666665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.4 Score=43.76 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=59.4
Q ss_pred CCCCCCCHHHHH-----HHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CHHHHHHHHHHHHhhc
Q 008097 4 SIQSPPDESIFI-----TVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE---DIDLARAFYRKKMMAS 75 (577)
Q Consensus 4 ~~g~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~a~~~~~~~m~~~ 75 (577)
+.|+|.+...|. .+++-+...+.+..|+++-..+...-.. +...+.....-+.+. .-+++++..++.+...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 457777776665 4566667778888888887777421111 134555555666654 2344455444233221
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 008097 76 GVQGDDYTYAILMKGLCLTNRVGDGFKLLHV 106 (577)
Q Consensus 76 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 106 (577)
. .+...|..+.+.....|+.+-|..+++.
T Consensus 504 -~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 -L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred -C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3445577777777788888888777654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.097 Score=41.81 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=60.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMT---------------GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRG 440 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~ 440 (577)
..++..++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|+++++.-+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~- 80 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR- 80 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 3445555556666666555555554331 234568899999999999999999999999994444
Q ss_pred cCCCCCCCcccHHHHHHHHHHcC
Q 008097 441 IGRGSLPGSGHYSPLIKALCEKG 463 (577)
Q Consensus 441 ~~~~~~p~~~~~~~li~~~~~~g 463 (577)
.++++-+...|..|+.-....-
T Consensus 81 -~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 -KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred -HcCCCCCHHHHHHHHHHHHHhc
Confidence 7787768888888887554443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.8 Score=41.94 Aligned_cols=402 Identities=15% Similarity=0.136 Sum_probs=212.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hcCHHHHHHHHHHHHhhc--CCCC--------
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV---KEDIDLARAFYRKKMMAS--GVQG-------- 79 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~a~~~~~~~m~~~--~~~~-------- 79 (577)
..+.++++|... +.+..........+. .| ...|-.+..++. +..+..|++.+. .-... +..|
T Consensus 48 l~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls-~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 48 LGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALS-VWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhhcccccchhhhhHH
Confidence 345677777753 555555555555442 22 223444444332 237888888776 33222 2222
Q ss_pred ----CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHH
Q 008097 80 ----DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGV----KPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFS 151 (577)
Q Consensus 80 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 151 (577)
|-..=+..+.++...|++.+++.+++++...=+ .-+..+|+.++-++.++=-++.- +.+...=..-|-
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~----e~~s~dl~pdyY 198 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELK----ESMSSDLYPDYY 198 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHH----HhcccccChHHH
Confidence 122224556777899999999999998876533 36888999888777764222111 111111111223
Q ss_pred HHHHHHHhc-------------------------------CChHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCHh
Q 008097 152 ILICAYCKE-------------------------------ENLVNALVLLEKSFSFGFVPDVVT-ITKVLELLCSVGRVM 199 (577)
Q Consensus 152 ~li~~~~~~-------------------------------~~~~~A~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~ 199 (577)
-||..|.+. .+..--.++++.-.+.-+.|+-.. ...+...+.+ +.+
T Consensus 199 emilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e 276 (549)
T PF07079_consen 199 EMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPE 276 (549)
T ss_pred HHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChH
Confidence 333333221 111111222222233334454322 2222222222 334
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHH-----
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTY----- 274 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----- 274 (577)
++..+-+.+... -.+.+.+. =+.++..++....+.++...|.+.+.-+.-. .|+...-
T Consensus 277 ~~~~~ce~ia~~-----------~i~~Lke~----li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Klll 339 (549)
T PF07079_consen 277 QVGHFCEAIASS-----------KIEKLKEE----LIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLL 339 (549)
T ss_pred HHHHHHHHHHHH-----------hHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhc
Confidence 433332222110 01112221 3456888888899999999998888776643 3333211
Q ss_pred --HHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCcccHHHHHH---HHHhcCC-HHHHHHHHHHHhhcCCCcee-
Q 008097 275 --DTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY---GLYRENQ-QDEALEYLKQMEKLFPRAVD- 343 (577)
Q Consensus 275 --~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~-~~~A~~~~~~~~~~~p~~~~- 343 (577)
..+-+..+. .-++..=..+++.+...+.+ ......-|+. -+-+.|. -++|+.+++.+.+..|....
T Consensus 340 s~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD---rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec 416 (549)
T PF07079_consen 340 SPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID---RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIEC 416 (549)
T ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHH
Confidence 112222221 11233334455555443111 1111222332 2444555 88899999999886553332
Q ss_pred hHHHH----HHhh---hcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 344 RSLKI----LGFC---VDGNVEDAKRCFDQMIEEGGVPNVV----IYDCLIHA--YCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 344 ~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
-+.+. ..|. +...+.+-..+-+-+.+.|++|-.+ .-|.+.++ +..+|++.++.-.-..+.+ +.|+
T Consensus 417 ~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS 494 (549)
T PF07079_consen 417 ENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPS 494 (549)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCc
Confidence 22221 2332 2234445555555566668876443 45555544 4568999999877666665 7899
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 411 ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 411 ~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
+.+|..+.-......++++|+.++. . ++|+...++.=
T Consensus 495 ~~~~RLlGl~l~e~k~Y~eA~~~l~-~-------LP~n~~~~dsk 531 (549)
T PF07079_consen 495 PQAYRLLGLCLMENKRYQEAWEYLQ-K-------LPPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH-h-------CCCchhhHHHH
Confidence 9999988877888999999999999 3 45777776653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=40.20 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH--GYL---PI-ASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
.+|+.+...|...|++++|++.|++..+. ... |+ ..++..+...+...|++++|++++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777777888888888877776631 011 22 3356666677777777777777777443
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.4 Score=39.30 Aligned_cols=147 Identities=13% Similarity=0.010 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
..+.++..+...|.+.-....+++..+...+.++...+.+.+.-.+.|+.+.|...|+...+. ..+.+-...+.++..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~--~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV--TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HhhhhccchhHHHHh
Confidence 345566666667777777777777777655556677777777777777777777777766654 222222222222211
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.....|.-.+++..|...|+++...+ +.|++.-|.-.-+..-.|+...|++
T Consensus 257 ----------------------------n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 257 ----------------------------NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred ----------------------------hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 01112334456666666666666542 2344444544444445677888888
Q ss_pred HHHHHHhCCCCCCHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~l 417 (577)
.++.|.. ..|.+.+-+++
T Consensus 308 ~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 308 QLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHhc--cCCccchhhhH
Confidence 8888876 34655554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.5 Score=39.28 Aligned_cols=235 Identities=11% Similarity=0.045 Sum_probs=130.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHH-HhcCC-HhHHHHHH-HhccCCCceeHHHHHHHHHh
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSL-CKNGK-VGRARSLM-SDMEEPNDVTFSILICAYCK 159 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~-~~~A~~~~-~~~~~~~~~~~~~li~~~~~ 159 (577)
.|+.-+.++.+.+..++|..-++..-+.. .||.+ |...=..| -+.|. +.-+.+++ .+++......|+.|++.+.-
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 35556677777777777766555554332 11211 11000001 11121 22233332 23333445567777776655
Q ss_pred cCChHHHHHHHHHHHhCCCCCC----------HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 160 EENLVNALVLLEKSFSFGFVPD----------VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
....++-+..++. +..|. ....+.++..+...|.+.-. ...+.+..+
T Consensus 149 ~~~V~~ii~~~e~----~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS-------------------~d~~~~vi~ 205 (366)
T KOG2796|consen 149 KTVVSKILANLEQ----GLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS-------------------VDAYHSVIK 205 (366)
T ss_pred HHHHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh-------------------HHHHHHHHH
Confidence 4444444333332 11111 12222333333334444333 344566666
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH-----HHHHcCCChHHHHHHHHHHHhccCCC
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLI-----RGLCSGGRIDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~~~~~~~ 304 (577)
...+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.++ ..|.-.+++.+|.+.+.++...++.
T Consensus 206 ~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~- 284 (366)
T KOG2796|consen 206 YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR- 284 (366)
T ss_pred hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-
Confidence 6656678888889999999999999999999887654444544444433 4456677888899989888876322
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehH
Q 008097 305 KGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
++...|.-.-+..-.|+..+|++..+.|.+..|...+-+
T Consensus 285 --~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 285 --NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred --chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 444444433344446778888888888877777655544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.1 Score=40.63 Aligned_cols=293 Identities=17% Similarity=0.132 Sum_probs=172.4
Q ss_pred HHHHHHHHH--hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHH--hcCCHhHHHHHHHhccCCCceeHHH----HHH
Q 008097 84 YAILMKGLC--LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLC--KNGKVGRARSLMSDMEEPNDVTFSI----LIC 155 (577)
Q Consensus 84 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~----li~ 155 (577)
|.+|-.++. -.|+-..|.++-.+-.+. +..|....-.|+.+-. -.|+++.|.+-|+.|.. |..+--. |.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHH
Confidence 555555554 467777787776655432 3345555555554433 35999999999999974 2222222 222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 156 AYCKEENLVNALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 156 ~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
.--+.|..+.|...-++.-.. .|. ...+..++...+..|+++.|+++.+.-... .-+.+
T Consensus 163 eAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~------------------~vie~ 222 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAA------------------KVIEK 222 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH------------------Hhhch
Confidence 234668888888877776543 333 467778888888999999998887654332 01111
Q ss_pred Chh--hHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 235 NVD--TYNILISSYC---ETGVLDSALDVFNDMKIDGISWNFVTY-DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 235 ~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
++. .-..|+.+-. -..+...|...-.+..+. .||..-- ..-..++.+.|++.++-.+++.+-+. ...|
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP-- 296 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHP-- 296 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCCh--
Confidence 211 1122222211 123455555555554443 5554322 22345677888888888888888765 2222
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHH---HhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQ---MEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIH 384 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~---~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 384 (577)
.. ..+..+.+.|+. ++.-+++ +....|+. .+..++..+-...|++..|..--+.... ..|....|..|.+
T Consensus 297 ~i--a~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAd 370 (531)
T COG3898 297 DI--ALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLAD 370 (531)
T ss_pred HH--HHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHH
Confidence 22 233334455543 2333333 33345544 4445556666777888887777666665 4688888888887
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 008097 385 AYCQE-ERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 385 ~~~~~-g~~~~A~~~~~~m~~~g~~p~ 410 (577)
.-... |+-.++...+.+..+.--.|+
T Consensus 371 IeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 371 IEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 76554 899999999988887544453
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.13 Score=50.04 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=40.4
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
..++.+..+|.+.|++++|...|++.++. .|+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566666677777777777777776663 3442 24666777777777777777777776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.52 Score=39.07 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
....++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.+.|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455556666777777777777766543 4466667777777777777777777766654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.23 Score=44.76 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGIS--WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
.|+.-+. +.+.|++..|...|...++.... -....+--|..++...|++++|..+|..+.+..+..+--+...-.|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3555544 34555677777777777664211 11223344667777777777777777777665444433445555666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
.+..+.|+.++|...|++..+..|+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 66667777777777777776666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.39 E-value=2.8 Score=40.45 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHhccCC-Cc-e--eH---HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 008097 120 NTLIHSLCKNGKVGRARSLMSDMEEP-ND-V--TF---SILICAYCK---EENLVNALVLLEKSFSFGFVPDVVTITKVL 189 (577)
Q Consensus 120 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~-~--~~---~~li~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll 189 (577)
..++-.|-...+++...++.+.+... +. . +- ....-++.+ .|+.++|++++..+......+++.||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455688888999999999988763 11 1 11 122334455 788899999998866666677888887777
Q ss_pred HHH
Q 008097 190 ELL 192 (577)
Q Consensus 190 ~~~ 192 (577)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.6 Score=39.39 Aligned_cols=96 Identities=18% Similarity=0.102 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCcCH-----HHHHHHHHHHHcCCChH---HHHHHHHHHHhccC
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID--------GISWNF-----VTYDTLIRGLCSGGRID---DGLKILQLMEDSKE 302 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~-----~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~ 302 (577)
|+.-.+.+.+..+++.|...+++..+. ...|+. .++..++.+|...+..+ +|.++++.+...
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-- 116 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-- 116 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--
Confidence 444444444433677776666654332 112222 34555666666666544 344444444332
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
.+-.+.++..-+..+.+.++.+.+.+.+.+|...
T Consensus 117 -~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 117 -YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred -CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1112333444455555566666666666666554
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.2 Score=35.27 Aligned_cols=83 Identities=11% Similarity=0.144 Sum_probs=53.5
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
..||++.....-+-.+-. +.......++.....|+-|+-.+++.++.+.+ .+++.....+..+|.+.|+..++-
T Consensus 67 s~C~NlKrVi~C~~~~n~-----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ 140 (161)
T PF09205_consen 67 SKCGNLKRVIECYAKRNK-----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREAN 140 (161)
T ss_dssp GG-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHH
T ss_pred hhhcchHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHH
Confidence 455555555544433322 44556777888888999998888888887533 677788888889999999999999
Q ss_pred HHHHHHHhc
Q 008097 292 KILQLMEDS 300 (577)
Q Consensus 292 ~~~~~~~~~ 300 (577)
+++.+.-+.
T Consensus 141 ell~~ACek 149 (161)
T PF09205_consen 141 ELLKEACEK 149 (161)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 998888776
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.042 Score=39.78 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..+++.+...|...|++++|++.+++..+
T Consensus 46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 46 ANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55777888888888888888888887653
|
... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.13 Score=46.17 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE----------------RVREASELMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~p~~~~~~~l 417 (577)
.+.++-....+..|.+.|+..|..+|+.|+..+=+.. +-+=+++++++|...|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4566666777788888888889999988888764432 223477888888888888888888888
Q ss_pred HHHHHhcCCH
Q 008097 418 LSGLCRQGNV 427 (577)
Q Consensus 418 l~~~~~~g~~ 427 (577)
++++.+.+-.
T Consensus 165 vn~FGr~~~p 174 (406)
T KOG3941|consen 165 VNAFGRWNFP 174 (406)
T ss_pred HHHhcccccc
Confidence 8888777653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.46 Score=47.31 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHh----hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQ----GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVF 259 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 259 (577)
-.+.++.-+.+.|..+.|+++...-..+ .++|+++.|.++.++ .++...|..|.+...+.|+++-|.+.|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3555555556666666666554332222 345555555443322 236668888888888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 260 NDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 260 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
.+... +..|+-.|.-.|+.+.-.++.+..... + -++....++...|+.++..+++.+.
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~--~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER--G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT--T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc--c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77642 445555677778877777776666554 2 3566666666777777777666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.7 Score=37.69 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL--PNVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+.+++++.......|++++|.+.|+.+..+.+- -...+--.++-++.+.+++++|+..+++..+.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4556666666666667777777777776654211 12233444455566677777777777666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.4 Score=47.78 Aligned_cols=105 Identities=18% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV 353 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 353 (577)
...++.-+-+.|..+.|.++...-..+ .....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~r--------------FeLAl~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHR--------------FELALQLGNLDIALEIAKEL----DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHH--------------HHHHHHCT-HHHHHHHCCCC----STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHH--------------hHHHHhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHH
Confidence 444455555555555555544332211 23334444444444332222 123344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
+|+++-|.+.|.+... |..++-.|.-.|+.+.-.++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4444444444444321 334444444455544444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.37 Score=46.95 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
+...++.+..+|.+.|++++|...|+...+.++....-..+|..+..+|.+.|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666665554222100002356666666666666666666666555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=1.9 Score=35.84 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=57.0
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCceehHHHHHHhhhcCCHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-PRAVDRSLKILGFCVDGNVED 359 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~ 359 (577)
+...|++++|..+|.-+...++. +..-|..|..++-..+++++|...|....... .|+.........|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 44568888888888877665322 44456667777777777888877777665532 234445555666677777777
Q ss_pred HHHHHHHHHH
Q 008097 360 AKRCFDQMIE 369 (577)
Q Consensus 360 A~~~~~~~~~ 369 (577)
|+..|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777766
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.34 Score=40.20 Aligned_cols=88 Identities=11% Similarity=0.002 Sum_probs=65.2
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
-+...|++++|..+|+-+...+ +-|..-|..|...|-..+++++|...|......+. .|+.+.--...++...|+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~---~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK---NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---CCCCccchHHHHHHHhCCH
Confidence 3456788899988888877654 33555566677777777888899888887765522 2566666778888888999
Q ss_pred HHHHHHHHHHhh
Q 008097 325 DEALEYLKQMEK 336 (577)
Q Consensus 325 ~~A~~~~~~~~~ 336 (577)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999888888766
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.3 Score=44.98 Aligned_cols=159 Identities=19% Similarity=0.148 Sum_probs=93.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc-----ccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehH
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI-----SPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRS 345 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 345 (577)
..++...+=.|+-+.+.+.+....+. .++.... ..|..++..++. ....+.|.+++..+.+..|+...|.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34445555567777777776665442 1211111 113333333332 4567788888888888888876665
Q ss_pred HH-HHHhhhcCCHHHHHHHHHHHHHcC-C--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008097 346 LK-ILGFCVDGNVEDAKRCFDQMIEEG-G--VPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL 421 (577)
Q Consensus 346 ~l-~~~~~~~g~~~~A~~~~~~~~~~~-~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (577)
.. ...+...|++++|.+.|++..... . +.....+--+.-.+....++++|.+.|.++.+.. .-...+|.-+.-+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 44 345667788888888888765320 0 1112233344555677788899999988888643 23344444444443
Q ss_pred -HhcCCH-------HHHHHHHH
Q 008097 422 -CRQGNV-------GTALKLVE 435 (577)
Q Consensus 422 -~~~g~~-------~~a~~~~~ 435 (577)
...|+. ++|.++|.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHH
Confidence 456666 77777776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.7 Score=44.05 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
+++.+..+|.+.+++.+|++.-.+.+..+ ++|....--=..+|...|+++.|+..|++.++ +.| |...-+-++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k-----~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK-----LEPSNKAARAELI 332 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCCCcHHHHHHHH
Confidence 44555556666666666666666666532 23444444445566666666666666664333 455 333334444
Q ss_pred HHHHHcCChhH-HHHHHHHHH
Q 008097 457 KALCEKGGFQS-ASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~-A~~~~~~m~ 476 (577)
.+-.+.....+ ..++|..|.
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 44444333322 245555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.36 Score=43.54 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce----ehHHHH
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV----DRSLKI 348 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~ 348 (577)
.|+.-++.| +.|++..|...|....+.-|+..-....+-.|..++...|++++|..+|..+.+..|+.. ...-+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666644 567899999999888887555444555566788888888888888888888877655432 233344
Q ss_pred HHhhhcCCHHHHHHHHHHHHHc
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
......|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 4455666666666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.53 Score=44.72 Aligned_cols=132 Identities=13% Similarity=0.008 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhc--cCCCC-CCcccHHHHHHHHHhcCCHHHHHHHHHHHhh----c---CCCce
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDS--KEGSK-GRISPYNSVLYGLYRENQQDEALEYLKQMEK----L---FPRAV 342 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~---~p~~~ 342 (577)
.|..|-..|.-.|+++.|+...+.-... ..|.+ .....+..+..++.-.|+++.|.+.++.... + .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555666666678889888776543221 11211 1123466777888888999999888876543 2 12334
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEE-----GGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+..++...|.-..+++.|+.++.+-... ...-...++-++..+|...|..++|+.+.+...+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566777777777888888888764432 1112345677888999999999999888776553
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.3 Score=42.33 Aligned_cols=62 Identities=15% Similarity=-0.031 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+++.+..+|.+.+++..|+..-...+..+ ++|...+--=..+|...|+++.|+..|+.+.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555566666666666666666666553 445555555556666666666666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.4 Score=37.56 Aligned_cols=139 Identities=9% Similarity=0.000 Sum_probs=71.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG---HG--YLPIASTFNTVLSGL 421 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~~~~~ll~~~ 421 (577)
....|..+|.++.|-..+++.-+. ....++++|++++++... .+ .+.-...+..+-+.+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 345677777777766666655432 122344555555554331 11 001112344445556
Q ss_pred HhcCCHHHHHHHHHHhhcc-cCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHHCC-C--CCCHHHHHHHHHHHHh
Q 008097 422 CRQGNVGTALKLVEEDMRG-IGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVGKG-I--LPDYLTWNSLLICLSQ 496 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~-~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~--~p~~~~~~~ll~~~~~ 496 (577)
.+..++++|-..|.+...- ....-.|+ -..|...|-.+.-..++..|...++.--.-+ + .-|..+...||.+|-
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd- 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD- 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-
Confidence 6677777776666532210 00001111 1235555666677778888988888843211 1 234567888888874
Q ss_pred cchHHH
Q 008097 497 QTTWLL 502 (577)
Q Consensus 497 ~~~~~~ 502 (577)
.|+.+.
T Consensus 240 ~gD~E~ 245 (308)
T KOG1585|consen 240 EGDIEE 245 (308)
T ss_pred cCCHHH
Confidence 344443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.93 Score=36.73 Aligned_cols=59 Identities=15% Similarity=0.291 Sum_probs=32.8
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 282 CSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.+.|++++|.+.|+.+..+-+..+-.....-.++.+|.+.+++++|...+++..++.|+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34566666666666666553333333334445556666666666666666666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.7 Score=35.30 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 245 SYCETGVLDSALDVFNDMKIDGI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
...+.|++++|.+.|+.+...-. +-....--.++.+|.+.+++++|...+++..+..|..+ -+.|-..+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp--~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP--NVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--CccHHHHHHHHHH
Confidence 34566777777777777765410 11234445567777777777777777777777644322 2345555555443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.9 Score=34.19 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.....-++.+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 33444455555555555555555555432 24555555555556666666666555555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.50 E-value=5 Score=38.96 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=90.9
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEG-GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST-FNTVLSGL 421 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~ 421 (577)
|...+..-.+..-++.|..+|-+..+.+ ..+++..+++++.-++ .|+..-|..+|+--... -||... -.-.+.-+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 4444555556666777777887777776 5567777777777665 45666777777654432 244333 23345555
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCCC--cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLPG--SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
.+-++-+.|..+|++.+.+ +..+ ...|..||+--..-|++..|..+=++|.+ +-|-..+...+.+-+....+
T Consensus 477 i~inde~naraLFetsv~r----~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 477 IRINDEENARALFETSVER----LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH----HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6677777777777754441 2222 45677777777777777777777777764 34555555555555554444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=44.03 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=71.0
Q ss_pred CCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------HHHHH
Q 008097 373 VPNVVIYDCLIHAYCQE-----ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN----------------VGTAL 431 (577)
Q Consensus 373 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------------~~~a~ 431 (577)
+.|-.+|-.++..+..+ +.++-....++.|.+.|+.-|..+|+.|++.+-+... -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45677777777777653 5667777788899999999999999999987754432 23356
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh-hHHHHHHHHHH
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF-QSASMLLVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 476 (577)
.+++ .|+ ..|+.||.++-..++++++|.|-. .+..++.--|+
T Consensus 144 ~vLe-qME--~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLE-QME--WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHH-HHH--HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 7777 777 777888888777888887777653 33344444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.29 E-value=10 Score=41.69 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=80.0
Q ss_pred CCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----HhcCCHhHHHHHH
Q 008097 130 GKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELL----CSVGRVMDAVEIL 205 (577)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~g~~~~a~~~~ 205 (577)
+++++|+.-+.++. ...|.-.+..--+.|.+.+|+.++ .|+...+..+..+| .....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 56667766666655 223444455555666677776654 45666655555444 3455566665555
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHc
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT--YDTLIRGLCS 283 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~ll~~~~~ 283 (577)
+. +|+.++| +.+|..+|++.+|+.+..++... .|... -..|+.-+..
T Consensus 963 e~------~GklekA----------------------l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 963 ER------CGKLEKA----------------------LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVE 1011 (1265)
T ss_pred HH------hccHHHH----------------------HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHH
Confidence 32 3333333 33455566666666666665421 12111 1345555666
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
.++.-+|-++....... ..-.+..+++...+++|+.+...
T Consensus 1012 ~~kh~eAa~il~e~~sd----------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD----------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cccchhHHHHHHHHhcC----------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 66666666665554432 22334445555556666554433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=2 Score=42.10 Aligned_cols=143 Identities=7% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHh---hcCCCcee-hHHHHH--------Hhh-hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 324 QDEALEYLKQME---KLFPRAVD-RSLKIL--------GFC-VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 324 ~~~A~~~~~~~~---~~~p~~~~-~~~l~~--------~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
.+.|+.+|.+.. ...|+... |..+.. ++. ......+|.++-++..+.+ +-|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 456677777777 55554332 211111 111 2345667777777777764 347777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC---cccHHHHHHHHHHcCChh
Q 008097 391 RVREASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG---SGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~---~~~~~~li~~~~~~g~~~ 466 (577)
+++.|..+|++... +.||.. +|......+...|+.++|.+.+++.++ ..|. ....-..++.|+.. .++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-----LsP~~~~~~~~~~~~~~~~~~-~~~ 424 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ-----LEPRRRKAVVIKECVDMYVPN-PLK 424 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCchhhHHHHHHHHHHHHcCC-chh
Confidence 89999999999887 457654 465666667788999999999986677 5663 33344445566654 456
Q ss_pred HHHHHHHHH
Q 008097 467 SASMLLVQM 475 (577)
Q Consensus 467 ~A~~~~~~m 475 (577)
+|..++-+-
T Consensus 425 ~~~~~~~~~ 433 (458)
T PRK11906 425 NNIKLYYKE 433 (458)
T ss_pred hhHHHHhhc
Confidence 677666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.6 Score=36.57 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhHHHHH
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTYAILM 88 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~~~ll 88 (577)
.-+.+||.|.--+...|+++.|.+.|+...+.++.-+-...|.-|..|.-.+++.|.+-|.+........|-...|-.+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34567777777777888888888888888776666666666666666655577777766653333333333333343332
Q ss_pred HHHHhcCCHhHHHHHH-HHHHhCCCCCCcchHHHHH-HHHHhcCCHhHHHHHHHhccC----------CCceeHHHHHHH
Q 008097 89 KGLCLTNRVGDGFKLL-HVMKSRGVKPNSVIYNTLI-HSLCKNGKVGRARSLMSDMEE----------PNDVTFSILICA 156 (577)
Q Consensus 89 ~~~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~ 156 (577)
. +.-++.+|..-+ ++..+ .|..-|...| ..|...=..+ .+|+++.. .=..||.-+..-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 233455554433 33322 2333343333 2222211112 23333321 113356666666
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 008097 157 YCKEENLVNALVLLEKSFSF 176 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~ 176 (577)
|...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 77777777777777665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=4.1 Score=36.64 Aligned_cols=59 Identities=19% Similarity=0.390 Sum_probs=34.0
Q ss_pred HcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 282 CSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.+.|++++|.+.|+.+....+..+-...+.-.++.++.+.+++++|+..+++.....|+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34566666666666666554443333334444555566666666666666666665553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.1 Score=42.16 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+...+.+.|+.++|.+.|++.|+ +....-+......|+.+|...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlk--e~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLK--EFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHh--hCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344455566777777776663333 22111123345556666667777777777666654
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.01 E-value=3.7 Score=41.67 Aligned_cols=161 Identities=15% Similarity=0.065 Sum_probs=107.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce---------ehHHHHHHhh----hcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV---------DRSLKILGFC----VDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
....++....-.|+-+.+++.+.+..+ .++.. .|...+..++ .....+.|.++++.+... -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCc
Confidence 466777777888999999999988766 22221 2333333333 246788899999999885 5777
Q ss_pred hhHHHHH-HHHHhcCCHHHHHHHHHHHHhC--CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccH
Q 008097 377 VIYDCLI-HAYCQEERVREASELMKEMTGH--GYL-PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHY 452 (577)
Q Consensus 377 ~~~~~li-~~~~~~g~~~~A~~~~~~m~~~--g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~ 452 (577)
..|...- +.+...|++++|++.|++.... ..+ .....+--+...+.-.+++++|...|. .+.. . -.-+...|
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~-~L~~-~--s~WSka~Y 342 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL-RLLK-E--SKWSKAFY 342 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH-HHHh-c--cccHHHHH
Confidence 7666544 5566789999999999976631 111 123345556667788899999999999 6651 1 12244445
Q ss_pred HHHHH-HHHHcCCh-------hHHHHHHHHHHH
Q 008097 453 SPLIK-ALCEKGGF-------QSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~-~~~~~g~~-------~~A~~~~~~m~~ 477 (577)
.-+.- ++...|+. ++|.+++++.+.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44443 34556777 888888888774
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.84 E-value=6 Score=37.34 Aligned_cols=202 Identities=15% Similarity=0.037 Sum_probs=103.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHH-HH---HHCC-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc---
Q 008097 237 DTYNILISSYCETGVLDSALDVFN-DM---KIDG-ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--- 308 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~-~m---~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--- 308 (577)
.++..+..+.++.|.+++++..-- +| .+.. -..--..|..+..++-+..++.+++.+-..-... +|..|..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~g 122 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGG 122 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccc
Confidence 445566667777777777654321 11 1100 0011233445555665555666666554443332 2222211
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----C--CceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCHh
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLF-----P--RAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNVV 377 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~ 377 (577)
....++..++.-.+.++++++.|+...+.. | ....+..+...|.+..++++|.-+..+..+. ++..-..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 223345566777778888888888876531 1 1234556666677777777776555554432 2111111
Q ss_pred hHH-----HHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYD-----CLIHAYCQEERVREASELMKEMT----GHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~-----~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
-|. -|.-++...|..-.|.+.-++.. ..|-+|- ......+.+.|...|+.+.|+.-++..|.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 122 23344555666655555555443 3332322 22345566667777777777777765554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.0024 Score=53.04 Aligned_cols=129 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG 425 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 425 (577)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|...|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcc
Confidence 3456677778888888888888876656678889999999999988888888877221 133346777888888
Q ss_pred CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 426 NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 426 ~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
.++++..++. .+...... ++.+...+++++|.+++.+. ++...|..++..|..++.
T Consensus 85 l~~~a~~Ly~-~~~~~~~a-----------l~i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYS-KLGNHDEA-----------LEILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHH-CCTTHTTC-----------SSTSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHH-HcccHHHH-----------HHHHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 8888888888 54411111 11233445666666555444 356789999888876654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.62 E-value=3.1 Score=38.69 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGH---GYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
.+|-+++|++.-++..+.+ +.|.-.-.+....+-..|+..++.++..+-.+. +-..-...|-...-.+...+.++.
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 5566666666666555531 123333344555555667777777665543321 000001112222223344567777
Q ss_pred HHHHHHHhhc
Q 008097 430 ALKLVEEDMR 439 (577)
Q Consensus 430 a~~~~~~~m~ 439 (577)
|+.+|+..|-
T Consensus 266 aleIyD~ei~ 275 (491)
T KOG2610|consen 266 ALEIYDREIW 275 (491)
T ss_pred HHHHHHHHHH
Confidence 7777775554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.57 E-value=1.6 Score=40.49 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHH----HHHHHHHhcCCHHH
Q 008097 320 RENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYD----CLIHAYCQEERVRE 394 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~ 394 (577)
-.|...+|-..++++.+..| |...+...-++|.-.|+.+.-...++++... -.||...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35566666666666666544 3445555556777777777777777777654 234443332 33345567899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCC--CCCCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRG--SLPGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
|.+.-++..+-+ +-|...-.++...+--.|++.++.++.. .-.. +.. --.-...|-...-.+...+.++.|++++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~-~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMY-KTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHH-hccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999988743 3366666777777888999999999988 3320 111 1111233445555566778999999999
Q ss_pred HHHH
Q 008097 473 VQMV 476 (577)
Q Consensus 473 ~~m~ 476 (577)
++-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.3 Score=41.43 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=133.0
Q ss_pred hcCChhHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHH-HH---HhccCCCCCCcccHHHHHHHHHhc
Q 008097 248 ETGVLDSALDVFNDMKID--GISWNFVTYDTLIRGLCSGGRIDDGLKILQ-LM---EDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~---~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
...+.++|+..+.+.... ...--..++..+.++.++.|.++++...-- .| .+.. ....-...|..+..++.+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~-ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE-DSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344556666666554432 011123456666777777787777654321 11 1110 0000112344455555555
Q ss_pred CCHHHHHHHHHHHhhc---CCCc---eehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---C--CCHhhHHHHHHHHHhcC
Q 008097 322 NQQDEALEYLKQMEKL---FPRA---VDRSLKILGFCVDGNVEDAKRCFDQMIEEGG---V--PNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~---~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--p~~~~~~~li~~~~~~g 390 (577)
.++.+++.+-..-... .|.. ....++..++...+.++++++.|+...+-.. . .....+..+.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 5555555554443332 2211 1223455677777889999999998876411 1 12457889999999999
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc-cCCCCCC-CcccHHHHHHHH
Q 008097 391 RVREASELMKEMTG----HGYLPIA-----STFNTVLSGLCRQGNVGTALKLVEEDMRG-IGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 391 ~~~~A~~~~~~m~~----~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~m~~-~~~~~~p-~~~~~~~li~~~ 459 (577)
++++|+-+..+..+ .++.-=. .....+.-++...|....|.+..++.|+- ...|-.| -.....++.|.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999877766542 2222111 12334556788899999999888866651 1223333 334467889999
Q ss_pred HHcCChhHHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQMV 476 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m~ 476 (577)
...|+.+.|..-++...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 99999999887777644
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=5.7 Score=35.35 Aligned_cols=222 Identities=19% Similarity=0.101 Sum_probs=139.6
Q ss_pred cCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (577)
.+....+...+......... .....+......+...+.+..+...+...... .........+......+...+....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 34455555555555544221 12456666667777777888777777766541 01122334455666666677777788
Q ss_pred HHHHHHHhhcCCCce-ehHHHHH-HhhhcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 328 LEYLKQMEKLFPRAV-DRSLKIL-GFCVDGNVEDAKRCFDQMIEEGG--VPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 328 ~~~~~~~~~~~p~~~-~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
...+.......+... ....... .+...|+.+.|...|.+...... ......+......+...++.+++...+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 115 LELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877776555442 2223333 67788888888888888855211 1223344444444667888889999888888
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
... .. ....+..+...+...+..+++...+.+... ..|+ ...+..+...+...|.++++...+.+...
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE-----LDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh-----hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 642 22 356777777888888888888888884444 3443 44455555555567778888888888774
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.14 E-value=16 Score=40.25 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=38.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHH
Q 008097 384 HAYCQEERVREASELMKEMTGHGYLPIAS--TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCE 461 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~ 461 (577)
.+|-..|++.+|+.+..++.. .-|.. +-..|..-+...++.-+|-++..+... .| .-.+..|++
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s------d~-----~~av~ll~k 1038 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS------DP-----EEAVALLCK 1038 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc------CH-----HHHHHHHhh
Confidence 344455566666665555532 11211 123455555566666666555552222 22 334455556
Q ss_pred cCChhHHHHHHHHH
Q 008097 462 KGGFQSASMLLVQM 475 (577)
Q Consensus 462 ~g~~~~A~~~~~~m 475 (577)
+..|++|..+...-
T Consensus 1039 a~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKA 1052 (1265)
T ss_pred HhHHHHHHHHHHhc
Confidence 66666665554433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.32 Score=30.39 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=27.3
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSL 490 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 490 (577)
..+..+...|.+.|++++|.+++++..+. .|+ ...|..|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHh
Confidence 35667788888888888888888888753 444 4555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.29 Score=30.61 Aligned_cols=40 Identities=5% Similarity=0.145 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008097 12 SIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSI 52 (577)
Q Consensus 12 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 52 (577)
.++..+..+|.+.|++++|+++|+++.+..| .+...|..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHh
Confidence 4678899999999999999999999988654 355555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.01 E-value=7.9 Score=36.21 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=72.4
Q ss_pred hcCChHHHHHHHHHHHhCC--CCCCH------hhHHHHHHHHHhcC-CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH-
Q 008097 159 KEENLVNALVLLEKSFSFG--FVPDV------VTITKVLELLCSVG-RVMDAVEILEESGEQGRLGKVKGGCRFLKEME- 228 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g--~~~~~------~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~- 228 (577)
+.|+.+.|..++.+..... ..|+. ..|+.- ....+.+ +++.|...+++..+. ++...
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G-~~l~~~~~~~~~a~~wL~~a~~~------------l~~~~~ 71 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG-KSLLSKKDKYEEAVKWLQRAYDI------------LEKPGK 71 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH-HHHHHcCCChHHHHHHHHHHHHH------------HHhhhh
Confidence 4566666666666554322 12221 122222 2333445 777887776665443 32211
Q ss_pred HcCCCCC-----hhhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 229 RKGCLPN-----VDTYNILISSYCETGVLD---SALDVFNDMKIDGISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 229 ~~~~~p~-----~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
.....|+ ..+...++.+|...+..+ +|..+++.+.... |+ +.++..-+..+.+.++.+.+.+++..|..
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 0111222 235667788888877654 5666777775542 33 44555567777778999999999999987
Q ss_pred c
Q 008097 300 S 300 (577)
Q Consensus 300 ~ 300 (577)
.
T Consensus 150 ~ 150 (278)
T PF08631_consen 150 S 150 (278)
T ss_pred h
Confidence 5
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.88 E-value=7.5 Score=35.75 Aligned_cols=120 Identities=11% Similarity=0.068 Sum_probs=70.5
Q ss_pred hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
...|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3445556666666666654322 345566778888889999999999988765422222222233344455555555444
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
.+-...-.. +.|...-..+...+...|+.+.|++.+-.+.+
T Consensus 224 ~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 224 DLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444321 12555556667777777888877776666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.21 E-value=1.8 Score=34.20 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc-CCCcee----hHHHHHHhhhcC
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL-FPRAVD----RSLKILGFCVDG 355 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~p~~~~----~~~l~~~~~~~g 355 (577)
.+..|+++.|++.|.+.... .+.....||.-..++.-.|+.++|++-+++..+. .|...+ |..-...|-..|
T Consensus 53 laE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44556666666666555543 2224455665556666666666666555555543 121111 112223455667
Q ss_pred CHHHHHHHHHHHHHcC
Q 008097 356 NVEDAKRCFDQMIEEG 371 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~ 371 (577)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777776666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.21 E-value=17 Score=38.15 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC---CcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKP---NSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
+.-+.+.+.+++|+.+-..... ..| ...++...|+.+.-.|++++|-.+.-.|...+..-|...+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 3455667778888776655443 233 34567888899999999999999999998888888888888888777765
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCS 194 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 194 (577)
....++ .......+...|..++..+..
T Consensus 441 ~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 544332 121222345667777766654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.8 Score=34.12 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=26.7
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
+.+..|+++.|++.|.+.+.. .+.....||.-..++.-.|+.++|++-+++..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 344455555555555555543 22344455555555555555555555555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.06 E-value=11 Score=35.52 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh--cC----CHhHHHHHHHhccC-------CCceeHHHHHHHHHhcCCh
Q 008097 97 VGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK--NG----KVGRARSLMSDMEE-------PNDVTFSILICAYCKEENL 163 (577)
Q Consensus 97 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 163 (577)
++....+++.|.+.|+..+.++|-+..-.... .. ...+|..+|+.|.+ ++..++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556778888888888777766554333333 11 24567777777764 344555555544 22222
Q ss_pred ----HHHHHHHHHHHhCCCCCC
Q 008097 164 ----VNALVLLEKSFSFGFVPD 181 (577)
Q Consensus 164 ----~~A~~~~~~m~~~g~~~~ 181 (577)
+.+...|+.+.+.|+..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kg 177 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKG 177 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 444555666665555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.80 E-value=7.6 Score=38.31 Aligned_cols=135 Identities=11% Similarity=0.026 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 356 NVEDAKRCFDQMIEE-GGVPN-VVIYDCLIHAYCQ---------EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467889999999822 24455 3344444433322 224567788888888754 34777777777778888
Q ss_pred CCHHHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcc
Q 008097 425 GNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY---LTWNSLLICLSQQT 498 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~ 498 (577)
|+++.|...|++... +.|| ...|......+.-+|+.++|.+.+++..+ +.|-. .+....+.-|+.++
T Consensus 352 ~~~~~a~~~f~rA~~-----L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKI-----HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhh-----cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc
Confidence 899999999996555 7884 56677777788889999999999999652 55543 33444444555554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.49 E-value=7.5 Score=32.59 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=10.2
Q ss_pred HcCCChHHHHHHHHHHHhc
Q 008097 282 CSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~~~ 300 (577)
++.+..++|..-|..+.+.
T Consensus 69 A~~~k~d~Alaaf~~lekt 87 (221)
T COG4649 69 AQENKTDDALAAFTDLEKT 87 (221)
T ss_pred HHcCCchHHHHHHHHHHhc
Confidence 3445555555555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.36 E-value=17 Score=36.28 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=75.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhc--CCh--hHHH-HHHHHHHHcCC
Q 008097 158 CKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRL--GKV--KGGC-RFLKEMERKGC 232 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--g~~--~~a~-~~~~~~~~~~~ 232 (577)
-+..+.+.-++.-++.++ +.||-.+.-.+ -+--......++++++++..+.++. |.. .... ...+....+..
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 344555555555555544 34443222222 2222345678888888887766211 110 0010 01111222222
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 233 LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 233 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
.|-...-..+..+.-+.|+.++|.+.|++|.+.... -+.-....|+.++...+.+.++..++.+-.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 222333344555666789999999999998865322 123356678888888999999988888764
|
The molecular function of this protein is uncertain. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.14 E-value=15 Score=35.51 Aligned_cols=98 Identities=14% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHc---CCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDG---ISWNFVTYDTLIRGLCS---GGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
.++-+|....+++...++.+.+.... +.-....-....-++.+ .|+.++|.+++..+... ...++..++..+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~--~~~~~~d~~gL~ 223 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES--DENPDPDTLGLL 223 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc--cCCCChHHHHHH
Confidence 44446888999999999999998641 11122222233445556 79999999999886655 344566667666
Q ss_pred HHHHHh---------cCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYR---------ENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~---------~g~~~~A~~~~~~~~~~~p~ 340 (577)
...|-. ....++|...+.+.-+..|+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 655532 11244555555555444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.99 E-value=11 Score=33.47 Aligned_cols=198 Identities=17% Similarity=0.086 Sum_probs=142.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
...+......+...+.+..+...+...... ........+......+...++...+...+......... +.......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD---PDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC---cchHHHHH
Confidence 466677778888899999999888887752 23445666777777788888899999999988764211 12223333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhhcCCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHh
Q 008097 315 LY-GLYRENQQDEALEYLKQMEKLFPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQ 388 (577)
Q Consensus 315 i~-~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 388 (577)
.. .+...|+++.|...+.+.....|. ...+......+...++.+.+...+.+.... .+. ....+..+...+..
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHH
Confidence 33 788999999999999998665442 122233333466789999999999999885 222 36778888899999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 389 EERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.++.++|...+...... .|+ ...+..+...+...|..+++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999874 354 44455555555577789999988885444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.3 Score=39.13 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=49.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG-----HGYLPIASTFNTVLS 419 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll~ 419 (577)
..++..+..+|+.+.+...++++... .+-|...|..++.+|.+.|+...|+..|+++.+ .|+.|...+......
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 34455566667777777777777665 234667777777777777777777777776653 567776666554444
Q ss_pred H
Q 008097 420 G 420 (577)
Q Consensus 420 ~ 420 (577)
+
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.81 E-value=13 Score=34.21 Aligned_cols=119 Identities=9% Similarity=-0.006 Sum_probs=61.2
Q ss_pred HHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCH
Q 008097 280 GLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNV 357 (577)
Q Consensus 280 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~ 357 (577)
.....|++.+|..+|.......+. +...--.+..+|...|+.+.|..++..+.....+.. ....-+..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567777777777776665322 344455666777777777777777766644221111 111222222233333
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+...+-.+.-.. +-|...--.+...|...|+.++|++.+-.+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333321 1144455555666666666666666655554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.71 E-value=1.3 Score=32.71 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
.-++.+-++.+....+.|++....+.++||.+..++.-|.++|+ .++ ..+..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE-~vK---~K~~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILE-AIK---DKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHccCchhhHHHHH
Confidence 34555666666667788888888888888888888888888888 666 12222444566554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.41 E-value=3 Score=38.36 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG-----KGILPDYLT 486 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 486 (577)
++..++..+...|+.+.+...+++.+. ..| +...|..++.+|.+.|+...|+..++++.+ .|+.|...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~-----~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE-----LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 444555666666777777776663333 445 666677777777777777777777766554 578888887
Q ss_pred HHHHHHH
Q 008097 487 WNSLLIC 493 (577)
Q Consensus 487 ~~~ll~~ 493 (577)
+......
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 7766666
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.65 Score=27.43 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.67 Score=26.79 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=16.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.4 Score=32.95 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
+..+-++.+....+.|++....+.+.||.+..++.-|.++|+ .++ ..+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE-~iK---~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE-GIK---DKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH-HHH---HHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHccChHHHHHHHHH
Confidence 455556666677788899899999999999999999999998 776 223333336766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.23 Score=28.99 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCC-CcccHHHHHHHHHHcCChhHHH
Q 008097 445 SLP-GSGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 445 ~~p-~~~~~~~li~~~~~~g~~~~A~ 469 (577)
+.| +...|..+..+|...|++++|.
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345 5666777777777777776664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.7 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
+|..|.++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999988854
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.25 E-value=28 Score=35.53 Aligned_cols=127 Identities=11% Similarity=0.127 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHH
Q 008097 45 SLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYT-YAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTL 122 (577)
Q Consensus 45 ~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 122 (577)
+...|..+|.---.. +.+.++..++ .+... -|..+- |-....-=.+.|..+.+.++|++.++ |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~-~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYD-IFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHH-HHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344566666544333 5566666666 33321 344332 23333333467888888888888887 566677777666
Q ss_pred HHHHH-hcCCHhHHHHHHHhccC------CCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 123 IHSLC-KNGKVGRARSLMSDMEE------PNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 123 i~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
+..+. ..|+.+..++.|+.... .....|...|..-..+.++.....+|++.++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 65544 34777788888887764 4555688888877888888888888888875
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.87 E-value=13 Score=31.31 Aligned_cols=101 Identities=14% Similarity=0.179 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
..+.+.+.+++|+...+..+|+.+.+.|++... .++...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH--
Confidence 355667788999999999999999999986554 444555666777666655543432 334444444444432
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
=...+..++..+...|++-+|+++.+...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 11135667778888888888888877653
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.72 E-value=2.8 Score=35.97 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNF--VTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
.+..+..-|++.|+.+.|++.|.++.+....+.. ..+-.+|....-.+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555543322221 223344444444455555554444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.34 E-value=0.98 Score=26.06 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|..+..+|...|++++|+..|++..+..|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 44555555566666666666655555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.23 E-value=2.5 Score=38.92 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=28.3
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
++++++.++..=+.-|+-||.+++..+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666555555444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.08 E-value=5.4 Score=34.52 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=42.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChh
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQ 466 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~ 466 (577)
.+.|+ ++|.+.|-++...+.--++.....+..-|. ..+.+++..++.+.+.-...+-.+|++.+..|+..|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666666655544334444434333333 4556666666554444222233456666666666666666666
Q ss_pred HHH
Q 008097 467 SAS 469 (577)
Q Consensus 467 ~A~ 469 (577)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.74 E-value=42 Score=35.79 Aligned_cols=173 Identities=14% Similarity=0.094 Sum_probs=101.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLV----KE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
....-+..+.+...+..|+.+-..-. -+......+...|. +. ++++|...|-+.+.. ++| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----HHH
Confidence 34455666667777777776655431 23333334443332 23 888888877632211 222 245
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCce-eHHHHHHHHHhcCChHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDV-TFSILICAYCKEENLVNA 166 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A 166 (577)
++-|.....+..--..++.+.+.|+. +...-+.|+..|.+.++.+.-.+..+...+.... -....+..+.+.+-.++|
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 66666666777777788888888875 5556677888999999988888877776622211 245566666666767777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 008097 167 LVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILE 206 (577)
Q Consensus 167 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 206 (577)
.-+-.+... .......++ -..+++++|.+.+.
T Consensus 483 ~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDILL---EDLHNYEEALRYIS 514 (933)
T ss_pred HHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHh
Confidence 665554321 222222222 23455666666543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.47 E-value=15 Score=31.55 Aligned_cols=20 Identities=10% Similarity=0.096 Sum_probs=11.6
Q ss_pred HHHHcCCChHHHHHHHHHHH
Q 008097 279 RGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~ 298 (577)
..+..+|++++|...++...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH
Confidence 34555666666666665544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.3 Score=35.37 Aligned_cols=100 Identities=18% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-CCc-----eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 008097 110 RGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-PND-----VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVV 183 (577)
Q Consensus 110 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 183 (577)
.|.+....+...++..-....+++.+...+-++.. |+. .+-.+.++-+. .-++++++-++..=...|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 35555666777777777777888999888877764 221 11122333333 346779999998888999999999
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGE 210 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 210 (577)
+++.+++.+.+.+++.+|.++...++.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999998887655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.32 E-value=5.1 Score=34.40 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPN--VVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.+++..+...+.+..
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34445555555555555555544322221 2234444555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.13 E-value=16 Score=30.39 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=32.7
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHH-HHHhhhcCCHHHHHHHHHHHHHc
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLK-ILGFCVDGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~ 370 (577)
.+.++.+++..++..+.-..|.......+ ...+...|++.+|.++|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 44566777777777776666655443332 23455777777777777777654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.90 E-value=22 Score=31.78 Aligned_cols=209 Identities=11% Similarity=0.020 Sum_probs=93.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCC--ceeHHHHHHHHHhc
Q 008097 83 TYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPN--DVTFSILICAYCKE 160 (577)
Q Consensus 83 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 160 (577)
.|.....+|...+++++|...+.+..+ +.+.+...|.+ ...++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 355555566667777777776666554 22333333321 123344444555544322 12344444555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGR-LGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
|.++-|-..+++.-+. ...-++++|++++.+...... .++... -...+
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~m---------------a~el~ 153 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQM---------------AFELY 153 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHH---------------HHHHH
Confidence 5555555544443211 122233344444333222100 001111 11223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCC----CCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCCcccHHH
Q 008097 240 NILISSYCETGVLDSALDVFNDMKIDG----ISWNF-VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS-KGRISPYNS 313 (577)
Q Consensus 240 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~ 313 (577)
...-..+.+...+++|-..|.+-.... --++. ..|.+.|-.|.-..++..|...++.-.+...-. ..+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445556666666655444322110 01111 224444555555677888888877644331111 123445666
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 008097 314 VLYGLYRENQQDEALEYL 331 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~ 331 (577)
|+.+| ..|+.+++..++
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 66665 345666555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.83 E-value=24 Score=32.51 Aligned_cols=60 Identities=15% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh
Q 008097 151 SILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ 211 (577)
Q Consensus 151 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 211 (577)
+...+.|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--.+.+-++.+.+.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 444567777888888888887776654 446666777777888888766666666665554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.5 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=14.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.91 E-value=19 Score=29.99 Aligned_cols=51 Identities=18% Similarity=0.082 Sum_probs=31.8
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcchH-HHHHHHHHhcCCHhHHHHHHHhccCC
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSVIY-NTLIHSLCKNGKVGRARSLMSDMEEP 145 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~ 145 (577)
+.++.+.+..+++.+.-. .|..... ..-...+.+.|++.+|+++|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 566777777777777654 3333222 22234466778888888888887653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.70 E-value=36 Score=32.98 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...+|..+...+.+.|.++.|...+. .+........+ .+.....-++.+...|+..+|...+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~-~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALN-RLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHH-HHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888999999999999999988 45411111111 455666677888889999999999888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.63 E-value=1.7 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
|..+...+.+.|++++|++.|++..+..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444555555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=85.60 E-value=1.1 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHH
Q 008097 375 NVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~ 396 (577)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666666666666666654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.34 E-value=6.7 Score=33.96 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=56.8
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-CCCcccHHHHHHHHHhcCCH
Q 008097 246 YCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS-KGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 246 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~ 324 (577)
+.+.|+ +.|++.|-++...+.--++.....+...|. ..+.++++.++-...+..... .+|+..+.+|.+.+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 678888888877765556666666665555 578888888887776654343 67788888888888888888
Q ss_pred HHHH
Q 008097 325 DEAL 328 (577)
Q Consensus 325 ~~A~ 328 (577)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7763
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.24 E-value=22 Score=30.02 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=73.5
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHH---HhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHH--HHHhcCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKIL---GFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIH--AYCQEER 391 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~--~~~~~g~ 391 (577)
+.+.+..++|+.-|..+.+..-........+. .....|+...|...|+++-.....|-.. -...+=. .+..+|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35667788888888888775433333233332 3557788888888888887753334332 1122222 2345777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++......+.+-..+-+.-+..-..|.-+-.+.|++..|.+.|. .+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~-qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFV-QIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHH-HHH
Confidence 88777777766544422233334556666678888888888888 444
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.81 E-value=30 Score=31.36 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
|-+.+...|...+.+..-.++++++.+.++..+-++-.+ .|.. =...|..=|..|....+-..-..+|++..
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~k-------KGtQ-LLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQK-------KGTQ-LLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhh-------ccch-hhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 334566677777777777777776665544333322211 1111 23456667778887777777777777765
Q ss_pred HC-CCCcCHHHHHHHHHH-----HHcCCChHHHHH
Q 008097 264 ID-GISWNFVTYDTLIRG-----LCSGGRIDDGLK 292 (577)
Q Consensus 264 ~~-g~~~~~~~~~~ll~~-----~~~~g~~~~a~~ 292 (577)
.. .--|.+.... +|+- ..+.|++++|..
T Consensus 219 hiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 219 HIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 32 1233443333 2332 334566776654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.80 E-value=11 Score=33.09 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK--GILPDYLTWNSLLI 492 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~ 492 (577)
..++.+.+.+...+|+...+...+ -+| |...-..+++.|+-+|+|++|..-++-.-+. ...+....|..+|.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVk-----akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVK-----AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-----cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 334455556666666666654444 344 4555556666666666666666555554321 12233455666555
Q ss_pred HH
Q 008097 493 CL 494 (577)
Q Consensus 493 ~~ 494 (577)
+-
T Consensus 81 ~e 82 (273)
T COG4455 81 CE 82 (273)
T ss_pred HH
Confidence 54
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.48 E-value=0.44 Score=39.33 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=60.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHH
Q 008097 86 ILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 86 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 165 (577)
.++..+.+.+.+....+.++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666777888888888888888776666788889999999999888888887773332 444566666777777777
Q ss_pred HHHHHHHH
Q 008097 166 ALVLLEKS 173 (577)
Q Consensus 166 A~~~~~~m 173 (577)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 76666543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.47 E-value=37 Score=32.03 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC---CCChhhH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGC---LPNVDTY 239 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~p~~~~~ 239 (577)
+++.+.+++.|.+.|+.-+..+|.+....... .+-+...+. ...+..+|+.|.+..+ .++-.++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~~------------~~ra~~iy~~mKk~H~fLTs~~D~~~ 144 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDEI------------IQRAKEIYKEMKKKHPFLTSPEDYPF 144 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHHH------------HHHHHHHHHHHHHhCccccCccchhH
Confidence 35566788999999999888777765444433 122222222 2345667888877532 2344556
Q ss_pred HHHHHHHHhcCC----hhHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCC--hHHHHHHHHHHHhccCCCCCCcccH
Q 008097 240 NILISSYCETGV----LDSALDVFNDMKIDGISWNF--VTYDTLIRGLCSGGR--IDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 240 ~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
..|+.. ...+ .+.+..+|+.+.+.|+..+. ...+.++..+..... ...+.++++.+.+. +.++....|
T Consensus 145 a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~--~~kik~~~y 220 (297)
T PF13170_consen 145 AALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN--GVKIKYMHY 220 (297)
T ss_pred HHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc--CCccccccc
Confidence 666554 3333 35677888888887876543 333444433322222 34677888888887 666666666
Q ss_pred HHHHHHH
Q 008097 312 NSVLYGL 318 (577)
Q Consensus 312 ~~li~~~ 318 (577)
..+.-..
T Consensus 221 p~lGlLa 227 (297)
T PF13170_consen 221 PTLGLLA 227 (297)
T ss_pred cHHHHHH
Confidence 6554433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.11 E-value=9.1 Score=32.46 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 359 DAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEER-----------VREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 359 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+|+.-|++.+. +.|+ ..++.++..+|..++. +++|.+.|++..+ ..|+..+|+.-+..+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 34444444444 2344 2455555555544331 4445555555554 3566666666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.03 E-value=33 Score=31.14 Aligned_cols=231 Identities=13% Similarity=0.193 Sum_probs=118.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc---cCCCCCCccc
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID---GI--SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS---KEGSKGRISP 310 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~ 310 (577)
...+|..+.+.|++++....|.+|..- .+ .-+..+.+++++..+.+.+.+.-.++++.-.+. ......--.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344677788888888888888877531 11 223455677777666565655555544432211 0011111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
-+.+...|...+.+.+-.+++.++.+. |+..+-++- .+.|. .=...|..=|..|....
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~S--------------Cq~edGedD-------~kKGt-QLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQS--------------CQTEDGEDD-------QKKGT-QLLEIYALEIQMYTEQK 205 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHH--------------hccccCchh-------hhccc-hhhhhHhhHhhhhhhhc
Confidence 345566666666666666666665441 000000000 00111 11345666677777777
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHH-----HhcCCHHHHH-HHHHHhhcccCCCCCCCc---ccHHHHHHHHH
Q 008097 391 RVREASELMKEMTGHG-YLPIASTFNTVLSGL-----CRQGNVGTAL-KLVEEDMRGIGRGSLPGS---GHYSPLIKALC 460 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~-~~~~~~m~~~~~~~~p~~---~~~~~li~~~~ 460 (577)
+-.+...++++...-. -.|.+.. ..+++-| .+.|.+++|. .+|+ ..+..+..-.|.. --|-.|.+.+.
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFE-AFKNYDEsGspRRttCLKYLVLANMLm 283 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFE-AFKNYDESGSPRRTTCLKYLVLANMLM 283 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHH-HHhcccccCCcchhHHHHHHHHHHHHH
Confidence 7777777777765311 2344433 3455555 3677887775 4455 6663222233422 23556666676
Q ss_pred HcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcc
Q 008097 461 EKGGFQSASMLLVQMVGKGIL--PDYLTWNSLLICLSQQT 498 (577)
Q Consensus 461 ~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~ 498 (577)
+.|-- -|+.-..++++ |.....+.|+.+|....
T Consensus 284 kS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 284 KSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhccc
Confidence 66521 12222223444 34455677888875543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.87 E-value=36 Score=31.48 Aligned_cols=111 Identities=8% Similarity=0.133 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhh-cCCCCCHhhHHHHHHHHHh-cC-CHhHHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCCHhHH
Q 008097 60 DIDLARAFYRKKMMA-SGVQGDDYTYAILMKGLCL-TN-RVGDGFKLLHVMKSR-GVKPNSVIYNTLIHSLCKNGKVGRA 135 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A 135 (577)
...+|+.+|+ .... ..+-.|...-..+++.... .+ ....-.++.+.+... |-.++..+...++..+++.+++.+-
T Consensus 143 ~Vv~aL~L~~-~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 143 IVVEALKLYD-GLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHhh-ccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 5567777776 2222 2244566666777766654 22 333334444444432 3466777888889999999999998
Q ss_pred HHHHHhccC-----CCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 136 RSLMSDMEE-----PNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 136 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
.++++.... .|...|..+|......|+..-..++.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888887653 577889999999999998776655544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.71 E-value=26 Score=35.70 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=22.7
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555555444332 2334555555555555555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.65 E-value=2.7 Score=25.43 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.+++.+...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.53 E-value=26 Score=29.58 Aligned_cols=127 Identities=15% Similarity=0.188 Sum_probs=68.5
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008097 33 ATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRG 111 (577)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 111 (577)
....+.+.++.|+...+..++..+.+. ++..-..++ ..++-+|.......+-.+. +....+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll-----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL-----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 334444556677777777778777777 655444333 3345555554443332222 2223344444444332
Q ss_pred CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHH
Q 008097 112 VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLL 170 (577)
Q Consensus 112 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 170 (577)
=...+..+++.+...|++-+|.+...+...-+...-..++.+..+.++..--..+|
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 01134556667777777777777777765555555555666655555544433333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.28 E-value=24 Score=28.96 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=33.2
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhcCCHhHHHHHHHhccCCC-ceeHHHHHHHH
Q 008097 93 LTNRVGDGFKLLHVMKSRGVKPNSV-IYNTLIHSLCKNGKVGRARSLMSDMEEPN-DVTFSILICAY 157 (577)
Q Consensus 93 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~ 157 (577)
...+++++..+++.|.-. .|+.. .-..-...+...|++++|.++|+++.+.. ...|..-+.++
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 466677777777666553 23222 11122333566777777777777776533 22444433333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.87 E-value=14 Score=27.83 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=57.7
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|.+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456676666666554322 222222334557788999999999999988999999887543 56777777777777776
Q ss_pred CCCCCCHhhHH
Q 008097 176 FGFVPDVVTIT 186 (577)
Q Consensus 176 ~g~~~~~~~~~ 186 (577)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 66 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF | Back alignment and domain information |
|---|
Probab=82.42 E-value=1.4 Score=34.95 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=30.8
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLS 495 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 495 (577)
.+...|.-.+|..+|++|++.|-.||. |+.|+.++.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 455667888999999999999999987 999998764
|
The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.94 E-value=75 Score=33.74 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK 58 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 58 (577)
....+|-.|.|+|++++|.++.....+. .......+-..+..|..
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 3456777888999999999988444332 23444556667777655
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.78 E-value=19 Score=36.59 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=22.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008097 247 CETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLM 297 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 297 (577)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555555544432 3344555555555555555555555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.35 E-value=12 Score=27.98 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008097 63 LARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMK 108 (577)
Q Consensus 63 ~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 108 (577)
+.++-+. .+....+-|++....+.+++|.+.+++..|.++++-++
T Consensus 25 e~rr~mN-~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLN-NLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHH-HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444 34444555666666666666666666666666666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.26 E-value=21 Score=26.99 Aligned_cols=63 Identities=11% Similarity=0.100 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIH 124 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 124 (577)
+.-+.++-+. .+....+-|++....+.+++|.|.+++..|.++++-++.+ ..+....|..++.
T Consensus 25 D~we~rrglN-~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLN-NLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHH-HHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred cHHHHHHHHH-HHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 4445555555 4555666677777777777777777777777777766543 2222225555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=81.00 E-value=2.4 Score=26.43 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=9.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHH
Q 008097 189 LELLCSVGRVMDAVEILEESG 209 (577)
Q Consensus 189 l~~~~~~g~~~~a~~~~~~~~ 209 (577)
..+|...|+.+.|++++++++
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344445555555554444433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.72 E-value=2.6 Score=24.13 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666654
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.60 E-value=3.7 Score=24.79 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhh
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSR 39 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 39 (577)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788889999999999999999888754
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.39 E-value=2.5 Score=23.93 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
..++.+.|++++|.+.|+++.+..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3344445555555555555544444
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.15 E-value=11 Score=35.26 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
+-|.+.|.+++|+..+.......| +.+.+..-..+|.+...+..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 457777888888888877777666 777777777777777777766666655554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 8e-14
Identities = 24/199 (12%), Positives = 61/199 (30%), Gaps = 18/199 (9%)
Query: 143 EEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAV 202
E P + + L+ + +L + + + ++ A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 203 EILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDM 262
+L +K L +D YN ++ + G + V +
Sbjct: 148 HLLVV----------------HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 263 KIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322
K G++ + ++Y ++ + + I + +E + + + +VL
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAG--TIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 323 QQDEALEYLKQMEKLFPRA 341
+A+ +K L P+
Sbjct: 250 TVLKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 9e-10
Identities = 20/185 (10%), Positives = 54/185 (29%), Gaps = 10/185 (5%)
Query: 36 LVSRFNMTPSLKIFNSILDVLVKEDIDLARAF----YRKKMMASGVQGDDYTYAILMKGL 91
S+ ++ + + + D L A Y +M G
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGK-VGRARSLMSDMEE----PN 146
+ +L ++K G+ P+ + Y + + + + G + M +
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 147 DVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILE 206
+ ++L+ + L + +P V +K+L + + + ++
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 207 ESGEQ 211
Sbjct: 296 PLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 19/202 (9%), Positives = 55/202 (27%), Gaps = 5/202 (2%)
Query: 293 ILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFC 352
+ + E ++A +L +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 353 VDGNVEDAKRCFD---QMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP 409
+ + A ++ + + +Y+ ++ + ++ +E ++ + G P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSAS 469
++ L + RQ ++ E M G + + L+ ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMS--QEGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 470 MLLVQMVGKGILPDYLTWNSLL 491
+ LP + + LL
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLL 278
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.4 bits (142), Expect = 2e-09
Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 2/147 (1%)
Query: 382 LIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441
L+ + + + + + A L+
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 442 GRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWL 501
+ L Y+ ++ +G F+ +L + G+ PD L++ + L C+ +Q
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 502 --LLLLLNEMVSFVMVVHELSAKEKRC 526
+ L +M + + L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLS 244
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 9e-06
Identities = 59/381 (15%), Positives = 119/381 (31%), Gaps = 100/381 (26%)
Query: 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIF-------NSILDVLVKEDI 61
P +++ I + G G+ + DV + + + + KIF NS VL
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEM--- 201
Query: 62 DLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNT 121
L + Y+ + + D++ I ++ + + +L ++KS+ N +
Sbjct: 202 -LQKLLYQ--IDPNWTSRSDHSSNIKLR----IHSIQA--ELRRLLKSK-PYENCL---- 247
Query: 122 LIHSLCKNGKVGRARSLMSDMEEPNDV-TFSILICAYCK------EENLVNAL-VLLEKS 173
L+ + +++ F++ CK + + + L
Sbjct: 248 LV---------------LLNVQNAKAWNAFNL----SCKILLTTRFKQVTDFLSAATTTH 288
Query: 174 FSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEME----- 228
S +T +V LL + + L ++ +++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 229 -RKGCLPNVDTYNILISSYCETGVLDSA--------LDVFN-DMKID----GISWNFVTY 274
+ N D +I S VL+ A L VF I + W V
Sbjct: 347 WKH---VNCDKLTTIIESSLN--VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334
++ + + L L+E K+ + IS + +Y E + LE +
Sbjct: 402 SDVM-------VVVNKLHKYSLVE--KQPKESTIS-----IPSIYLELKVK--LENEYAL 445
Query: 335 EKLFPRAVDRSLKILGFCVDG 355
+ VD F D
Sbjct: 446 HR---SIVDHYNIPKTFDSDD 463
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.71 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.55 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.5 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.48 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.15 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.14 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.1 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.09 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.9 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.87 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.72 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.66 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.64 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.61 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.53 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.42 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.41 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.37 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.36 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.35 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.35 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.17 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.15 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.11 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.09 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.04 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.03 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.02 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.94 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.87 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.82 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.81 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.75 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.65 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.56 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.53 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.47 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.44 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.39 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.28 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.26 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.12 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.99 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.87 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.75 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.73 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.19 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.06 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.89 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.84 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.81 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.77 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.46 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.05 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.86 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.15 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.7 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.43 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.05 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.09 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.39 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.36 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.98 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.62 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 88.27 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.98 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 85.34 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.83 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.05 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.61 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.58 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.51 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.47 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=335.96 Aligned_cols=444 Identities=12% Similarity=0.000 Sum_probs=266.9
Q ss_pred HhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhH
Q 008097 21 LGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGD 99 (577)
Q Consensus 21 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 99 (577)
+.+.|.+..+...++.+ +.+++..|+.++..+.+. ++++|+.+|+ .|.. ..|+..++..++.+|.+.|++++
T Consensus 63 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-~~~~--~~p~~~~~~~l~~~~~~~g~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGE-KVLD--ITGNPNDAFWLAQVYCCTGDYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHH--HHCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHH-HHHh--hCCCchHHHHHHHHHHHcCcHHH
Confidence 44556666666666655 235677777777777777 7777777777 5543 34566777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC-------------------CceeHHHHHHHHHhc
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP-------------------NDVTFSILICAYCKE 160 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~ 160 (577)
|.++|+.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 77777776542 456777777777777777777777777754332 356777777777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhh--------------------------------------HHHHHHHHHhcCCHhHHH
Q 008097 161 ENLVNALVLLEKSFSFGFVPDVVT--------------------------------------ITKVLELLCSVGRVMDAV 202 (577)
Q Consensus 161 ~~~~~A~~~~~~m~~~g~~~~~~~--------------------------------------~~~ll~~~~~~g~~~~a~ 202 (577)
|++++|++.|++|.+.+.. +... |+.++..|.+.|++++|.
T Consensus 214 g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 7777777777777664321 2222 222244556777777777
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008097 203 EILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLC 282 (577)
Q Consensus 203 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 282 (577)
++|+.+. +. +++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.+|.
T Consensus 293 ~~~~~~~-------------------~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 293 DYLSSIN-------------------GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHHTST-------------------TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHhh-------------------cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 7754432 21 2466666666666666666666666666666543 235556666666666
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAK 361 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 361 (577)
+.|++++|.++++.+... .+.+..+|+.++.+|.+.|++++|.++|+++.+..|+ ...|+.++..|.+.|++++|.
T Consensus 351 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666666643 1225556666666666666666666666666665443 345666666666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 362 RCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 362 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
++|+++.+.+ +++..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..+...|.+.|++++|.++|++.+...
T Consensus 428 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 428 SAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 6666666542 2355666666666666666666666666666532 2345666666666666666666666666322200
Q ss_pred -CCCCCCC--cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHH
Q 008097 442 -GRGSLPG--SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLL 502 (577)
Q Consensus 442 -~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 502 (577)
+.+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ ..+..+|..+..+|...|+++.
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 0134554 5566666666666666666666666666432 2245666666666666666543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=335.60 Aligned_cols=461 Identities=11% Similarity=0.013 Sum_probs=377.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHH
Q 008097 60 DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLM 139 (577)
Q Consensus 60 ~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 139 (577)
....+...+. .+ ..++...|+.++..|.+.|++++|..+|+++.+ ..|+..++..++.+|.+.|++++|..+|
T Consensus 68 ~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 68 SFLKERNAQN-TD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCccc-cc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 4455555555 32 246788999999999999999999999999986 4578889999999999999999999999
Q ss_pred Hhc--cCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 140 SDM--EEPNDVTFSILICAYCKEENLVNALVLLEKSFSF---------------GFVPDVVTITKVLELLCSVGRVMDAV 202 (577)
Q Consensus 140 ~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------g~~~~~~~~~~ll~~~~~~g~~~~a~ 202 (577)
+++ ..++..+|+.++.+|.+.|++++|+++|+++... +..++..+|+.++.+|.+.|++++|.
T Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 141 TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp HHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 999 4588999999999999999999999999953221 22346889999999999999999999
Q ss_pred HHHHHHHHhhhcCChhH------------------HHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 203 EILEESGEQGRLGKVKG------------------GCRF-LKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 203 ~~~~~~~~~~~~g~~~~------------------a~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
++|+.+.+.. ...... +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.
T Consensus 221 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 299 (597)
T 2xpi_A 221 ECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh
Confidence 9999998761 111111 0111 4444444444556678888999999999999999999998
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ce
Q 008097 264 IDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AV 342 (577)
Q Consensus 264 ~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 342 (577)
+. +++..++..++.+|.+.|++++|.++|+.+....+ .+..+|+.++.++.+.|++++|..+++++.+..|+ ..
T Consensus 300 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 374 (597)
T 2xpi_A 300 GL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP---YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAV 374 (597)
T ss_dssp TG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH
T ss_pred cC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHH
Confidence 75 68999999999999999999999999999998632 37889999999999999999999999999887664 67
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
.++.++.+|.++|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 7889999999999999999999999885 23468899999999999999999999999999754 347889999999999
Q ss_pred hcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 008097 423 RQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK----GILPD--YLTWNSLLICLS 495 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~ll~~~~ 495 (577)
+.|++++|.++|++.+. ..| +..+|+.++.+|.+.|++++|.++++++.+. +..|+ ..+|..+..+|.
T Consensus 453 ~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-----LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 99999999999994443 344 7889999999999999999999999999876 67888 789999999999
Q ss_pred hcchHHHHHH---------HHHHHHHHHHHhhhhhhhhHHHHHhh--HhhhcCCCC
Q 008097 496 QQTTWLLLLL---------LNEMVSFVMVVHELSAKEKRCKLRSL--NHLAHGAGS 540 (577)
Q Consensus 496 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 540 (577)
+.|+.+.+.. |.+...+..+++.|...|++++.... ..+...|..
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 9999875431 22345678888899888888776554 244555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=266.17 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
.+.++.|.++|++|...|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcch
Q 008097 434 VEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTT 499 (577)
Q Consensus 434 ~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 499 (577)
|+ .|. ..|+.||..+|++||++|++.|++++|.+++++|.+.|..|+..||+.|+..|+..++
T Consensus 163 ~~-~M~--~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 163 DA-HMV--ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp HH-HHH--HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHH
T ss_pred HH-HHH--hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcc
Confidence 99 898 7899999999999999999999999999999999999999999999999999987543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-29 Score=252.78 Aligned_cols=203 Identities=14% Similarity=0.220 Sum_probs=178.9
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC---------hHH
Q 008097 220 GCRFLKEMERKGCLPNV-DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR---------IDD 289 (577)
Q Consensus 220 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~ 289 (577)
+..+.+.+.+++..+.+ ..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455667666665544 46889999999999999999999999999999999999999999987765 688
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh--cCCCceehHHHHHHhhhcCCHHHHHHHHHHH
Q 008097 290 GLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK--LFPRAVDRSLKILGFCVDGNVEDAKRCFDQM 367 (577)
Q Consensus 290 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (577)
|.++|++|... |..||..+|+++|.+|++.|++++|.++|++|.+ ..|+..+|+++|.+|++.|++++|.++|++|
T Consensus 89 A~~lf~~M~~~--G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 89 GFDIFKQMIVD--KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999988 9999999999999999999999999999999987 5799999999999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-26 Score=223.83 Aligned_cols=373 Identities=15% Similarity=0.066 Sum_probs=279.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 164 (577)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566778888888877777653 22445566666777777888888877776653 34567788888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+|+..|+++.... +.+..+|..+..++.+.|++++|.+.++.+ ....+ .+...+..+..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~p-~~~~~~~~l~~ 143 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------LQYNP-DLYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------HHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHhCC-CcHHHHHHHHH
Confidence 8888888877643 223456777788887777777777765443 22211 13456677777
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.+...|++++|...|+++.+.. +.+..+|..+...|.+.|++++|...|+++...++. +...|..+...+...|++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCCH
Confidence 7888888888888888887653 335677888888888888888888888888876332 556778888888888888
Q ss_pred HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|...+.+..+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|++.|+++.
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888888888887775 4567778888888999999999999988852 2356788899999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 404 GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 404 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
+.. +++..++..+...+...|++++|...+++.+. ..| +...+..+..+|.+.|++++|.+.++++.+ +.|
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p 370 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISP 370 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-----SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCT
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCC
Confidence 752 44677888899999999999999999995444 345 577889999999999999999999999984 556
Q ss_pred C-HHHHHHHHHHHH
Q 008097 483 D-YLTWNSLLICLS 495 (577)
Q Consensus 483 ~-~~~~~~ll~~~~ 495 (577)
+ ...|..+-..+.
T Consensus 371 ~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 371 TFADAYSNMGNTLK 384 (388)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHhHHHHHH
Confidence 5 455555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-25 Score=218.58 Aligned_cols=379 Identities=14% Similarity=0.086 Sum_probs=217.4
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcC
Q 008097 17 VIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTN 95 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 95 (577)
+...+.+.|++++|++.++.+.+..| .+...+..+...+... ++++|...++ ...... +.+..+|..+..++.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~-~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST-LAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CCchHHHHHHHHHHHHCC
Confidence 34455666677777776666655332 2334444444444444 6666666665 333221 234555666666666666
Q ss_pred CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008097 96 RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS 175 (577)
Q Consensus 96 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 175 (577)
++++|.+.|+++.+.. +.+...|..+...|.+.|++++|.+.|+++ ..
T Consensus 82 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------l~ 129 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSA-------------------------------LQ 129 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHH-------------------------------HH
T ss_pred CHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------------------HH
Confidence 6666666666665532 112334555555555555555555555544 33
Q ss_pred CCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhH
Q 008097 176 FGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDS 254 (577)
Q Consensus 176 ~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 254 (577)
.. |+ ...+..+...+...|++++|.+.++.+ .... +.+..+|+.+...+...|++++
T Consensus 130 ~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 130 YN--PDLYCVRSDLGNLLKALGRLEEAKACYLKA-------------------IETQ-PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH-------------------HHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred hC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHH-------------------HHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 21 22 223333444444444444444443222 1111 1134555566666666666666
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 255 ALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 255 A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
|...|+++.+.. +.+...+..+...+...|++++|...+++.....+. +..++..+...+.+.|++++|...|+++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666665542 224455566666666666666666666666554221 4455666666666666666666666666
Q ss_pred hhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008097 335 EKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST 413 (577)
Q Consensus 335 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 413 (577)
.+..|+ ...+..+...|.+.|++++|...|+++.+. .+.+..+|+.+...+...|++++|++.++++.+.. +.+..+
T Consensus 264 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 665554 344566666677777777777777777665 34566777778888888888888888888877632 234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG 463 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g 463 (577)
+..+...+.+.|++++|...|++.+. +.| +...|..+...+...|
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIR-----ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHT-----TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHhHHHHHHHcc
Confidence 77777788888888888888874444 455 4556666666655544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-22 Score=205.28 Aligned_cols=449 Identities=10% Similarity=-0.034 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
...+..+...+.+.|++++|+..|+.+.+.+ |+...|..+..++... ++++|+..|+ .+.+.. +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMST-KALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHH-HHhccC-hHHHHHHHHHHH
Confidence 4567888999999999999999999998854 6889999999999998 9999999999 555543 335678889999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC----CCceeHHHHHHHHHhcCChHH
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE----PNDVTFSILICAYCKEENLVN 165 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 165 (577)
++.+.|++++|...|+++.+.+. ++......++..+.+......+.+.+..+.. ++...++..............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999998763 3445555555555544433333333322211 111111111111111111111
Q ss_pred HHHHHHHHHhCCCC--------C-CHhhHHHHHHHHHh---cCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCC-
Q 008097 166 ALVLLEKSFSFGFV--------P-DVVTITKVLELLCS---VGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGC- 232 (577)
Q Consensus 166 A~~~~~~m~~~g~~--------~-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~- 232 (577)
...+...+...... | +...+......+.. .|++++|...++.+.+. ++.......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~~~~ 228 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL------------FEEQLDKNNE 228 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH------------HHHHTTTSTT
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH------------hhhhhccCcc
Confidence 11111111111111 1 13334444444443 67777777776654431 111110000
Q ss_pred -----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 233 -----LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 233 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
+.+...|..+...+...|++++|...|+++.+.. |+..++..+...|...|++++|...++.+.... +.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~ 303 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNN 303 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTC
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCC
Confidence 1245678888999999999999999999998874 448888999999999999999999999998763 236
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
...+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+. .+.+..+|..+...|
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEIL 382 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHH
Confidence 678999999999999999999999999987765 456778888999999999999999999886 234678899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 387 CQEERVREASELMKEMTGHGY-LPI----ASTFNTVLSGLCR---QGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
...|++++|+..++++.+..- .|+ ...+..+...+.. .|++++|...|++.+. ..| +...+..+..
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~la~ 457 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK-----LDPRSEQAKIGLAQ 457 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHH
Confidence 999999999999999885321 122 3378888999999 9999999999996555 345 6778899999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPDY-LTWNS 489 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ 489 (577)
+|.+.|++++|.+.+++..+ +.|+. ..|..
T Consensus 458 ~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~ 488 (514)
T 2gw1_A 458 MKLQQEDIDEAITLFEESAD--LARTMEEKLQA 488 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCSSHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH--hccccHHHHHH
Confidence 99999999999999999985 45664 33443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-22 Score=199.80 Aligned_cols=310 Identities=13% Similarity=0.037 Sum_probs=206.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHH
Q 008097 80 DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICA 156 (577)
Q Consensus 80 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 156 (577)
+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45556666777777777777777777776643 23566677777777777777777777777653 345567777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDV---VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL 233 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 233 (577)
|.+.|++++|...|+++.... +.+. ..+..+...+...+.+..|... ...|++++|...|+.+.....
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~A~~~~~~~~~~~~- 174 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNA-------FGSGDYTAAIAFLDKILEVCV- 174 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCHHHHHHHHHHHHHHCT-
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCHHHHHHHHHHHHHhCC-
Confidence 777888888888887777643 1223 4555555443333323333222 234555556666666665432
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
.+...+..+...|.+.|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+.+....+. +...+..
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 250 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAH 250 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHH
Confidence 266778888888888888888888888887653 446778888888888888888888888888765222 3333443
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHhhcCCCc-----eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH
Q 008097 314 V------------LYGLYRENQQDEALEYLKQMEKLFPRA-----VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV 376 (577)
Q Consensus 314 l------------i~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 376 (577)
+ ...+.+.|++++|...|+++.+..|+. ..+..+...+.+.|++++|...++++.+. .+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~ 329 (450)
T 2y4t_A 251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccH
Confidence 3 666777777777777777777766653 24555666677777777777777777664 22356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..|..+..+|...|++++|...|+++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6777777777777777777777777776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-21 Score=195.78 Aligned_cols=338 Identities=13% Similarity=0.078 Sum_probs=266.7
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGF 178 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 178 (577)
..+..+.... +.+...+..+...|.+.|++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+.+
T Consensus 13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 3344444332 34677889999999999999999999999864 467789999999999999999999999998865
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC-h---hhHHHH------------
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN-V---DTYNIL------------ 242 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~---~~~~~l------------ 242 (577)
+.+..++..+..++.+.|++++|.+.++.+.+. .|+ . ..|..+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---------------------NPSENEEKEAQSQLIKSDEMQRLRSQ 149 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------------CCCChhhHHHHHHHHHHHHHHHHHHH
Confidence 335788899999999999999988887655432 122 2 344443
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+....+ .+..+|..+...|...|
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN---DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC---SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC
Confidence 455889999999999999998764 45788899999999999999999999999987633 36788999999999999
Q ss_pred CHHHHHHHHHHHhhcCCCceeh-HHH------------HHHhhhcCCHHHHHHHHHHHHHcCCCCC-----HhhHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPRAVDR-SLK------------ILGFCVDGNVEDAKRCFDQMIEEGGVPN-----VVIYDCLIH 384 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~~~~~-~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~ 384 (577)
++++|...|+++.+..|+.... ..+ ...|.+.|++++|...|+++.+. .|+ ...|..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 9999999999999988876543 333 67889999999999999999985 344 457889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH-----
Q 008097 385 AYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA----- 458 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~----- 458 (577)
.+.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-----HNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999998742 23678899999999999999999999995555 567 45566666633
Q ss_pred -------HHHcC-----ChhHHHHHHHH
Q 008097 459 -------LCEKG-----GFQSASMLLVQ 474 (577)
Q Consensus 459 -------~~~~g-----~~~~A~~~~~~ 474 (577)
|...| ..+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 33344 45566666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-20 Score=193.77 Aligned_cols=434 Identities=10% Similarity=-0.008 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHH
Q 008097 11 ESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMK 89 (577)
Q Consensus 11 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~ 89 (577)
...+..+...+.+.|++++|++.|+.+.+..+ .+...|..+...|.+. ++++|++.|+ ...... +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTT-KALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHH-HHHhcC-CchHHHHHHHHH
Confidence 45678888899999999999999999987653 4778888888888888 9999999998 555543 235777888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCC------CceeHHHHHHHHHhcCCh
Q 008097 90 GLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEP------NDVTFSILICAYCKEENL 163 (577)
Q Consensus 90 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~ 163 (577)
++...|++++|...|+.+ .. .|+ .....+..+...+....|...++++... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999633 32 222 2223344566667778888888888642 223345556666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhc-CCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC------
Q 008097 164 VNALVLLEKSFSFGFVPDVVTI-TKVLELLCSV-GRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN------ 235 (577)
Q Consensus 164 ~~A~~~~~~m~~~g~~~~~~~~-~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~------ 235 (577)
+.+...+..... ..+....+ ..+...+... +.+..+. |++++|..+|+.+.+.... +
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~------------~~~~~A~~~~~~~l~~~p~-~~~~~~~ 241 (537)
T 3fp2_A 177 HLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVAN------------DLLTKSTDMYHSLLSANTV-DDPLREN 241 (537)
T ss_dssp HHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHH------------HHHHHHHHHHHHHHC--CC-CHHHHHH
T ss_pred HHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHH------------HHHHHHHHHHHHHHHHCCC-cchhhHH
Confidence 776665544321 12222222 2222222111 2222222 3455566667777664322 2
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 -VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
..++..+...+...|++++|...|+++.+. .|+..++..+...|...|++++|...++.+....+ .+..++..+
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l 316 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP---EYPPTYYHR 316 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC---CCHHHHHHH
Confidence 234666777888999999999999999986 56688899999999999999999999999988633 267789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|+++
T Consensus 317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 395 (537)
T 3fp2_A 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFD 395 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999987775 4567888899999999999999999999863 345778999999999999999
Q ss_pred HHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 394 EASELMKEMTGHG-----YLPIASTFNTVLSGLCRQ----------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 394 ~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
+|++.|+++.+.. .......+......+... |++++|...|++.+. ..| +...|..+..
T Consensus 396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-----~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE-----LDPRSEQAKIGLAQ 470 (537)
T ss_dssp HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-----hCCCCHHHHHHHHH
Confidence 9999999987532 111122344455677777 999999999996665 355 6788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHC
Q 008097 458 ALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+|.+.|++++|.+.+++..+.
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999853
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-20 Score=193.68 Aligned_cols=256 Identities=14% Similarity=-0.027 Sum_probs=209.2
Q ss_pred hhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 236 VDTYNILISSYCE---TGVLDSALDVFNDMKI-----DGI--------SWNFVTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 236 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
...+......+.. .|++++|...|+++.+ ... +.+..++..+...+...|++++|...++.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444444444 8999999999999987 311 23456788888999999999999999999988
Q ss_pred ccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008097 300 SKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP-RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 300 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 378 (577)
..+ +...+..+...+...|++++|...++++.+..| +...+..+...|...|++++|...|+++.+.. +.+...
T Consensus 266 ~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 340 (514)
T 2gw1_A 266 LFP----RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFP 340 (514)
T ss_dssp HCC----CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHH
T ss_pred hCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHH
Confidence 732 267788899999999999999999999998766 45667788889999999999999999999863 336778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-------ccc
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-------SGH 451 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-------~~~ 451 (577)
|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...+++.+. ..|+ ...
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~ 414 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-----LENKLDGIYVGIAP 414 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHTSSSCSSCSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----hhhccchHHHHHHH
Confidence 9999999999999999999999998742 23567888899999999999999999995554 2232 338
Q ss_pred HHHHHHHHHH---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 452 YSPLIKALCE---KGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 452 ~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
|..+..+|.+ .|++++|.+.++++.+.. +.+..+|..+...+...|+.+.+
T Consensus 415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 415 LVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999 999999999999998642 33467888899999999987644
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.6e-19 Score=181.49 Aligned_cols=398 Identities=12% Similarity=0.045 Sum_probs=295.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|.++.++..+...|.+.|++++|++.|+.+.+.++ .+...|..+...+... ++++|+..|+ .+.. .|+. ...
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~---~~~~--~~~ 128 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLS-VLSL---NGDF--DGA 128 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc---CCCC--ChH
Confidence 56889999999999999999999999999988653 4678888888888888 9999999997 5532 2222 122
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCce---eHHHHHHHHHh--
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRG--VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDV---TFSILICAYCK-- 159 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~-- 159 (577)
.+..+...+....|...++.+.+.. ..+........+..|....+.+.+...+....+.+.. .+..+...+..
T Consensus 129 ~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 208 (537)
T 3fp2_A 129 SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATD 208 (537)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhh
Confidence 3445555666788999999987642 1112223345566677788888888777776654443 33333333322
Q ss_pred ------cCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 160 ------EENLVNALVLLEKSFSFGFVPDVV-------TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 160 ------~~~~~~A~~~~~~m~~~g~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
.|++++|+..|+++...... +.. ++..+...+...|++++|...+ ..
T Consensus 209 ~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~-------------------~~ 268 (537)
T 3fp2_A 209 EGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLL-------------------QE 268 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-------------------HH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHH-------------------HH
Confidence 24789999999999875422 222 3445555566666666666654 44
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
.... .|+...|..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|...++.+....+.
T Consensus 269 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--- 342 (537)
T 3fp2_A 269 SINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE--- 342 (537)
T ss_dssp HHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---
T ss_pred HHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---
Confidence 4443 3567888889999999999999999999998764 446788999999999999999999999999887433
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-----CCHhhHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-----PNVVIYD 380 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~ 380 (577)
+...|..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+.... .....+.
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 422 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI 422 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 5678999999999999999999999999987775 457788888999999999999999998875211 1122244
Q ss_pred HHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 381 CLIHAYCQE----------ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 381 ~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.....|... |++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+.
T Consensus 423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556777777 99999999999999743 23567889999999999999999999996666
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-17 Score=162.52 Aligned_cols=312 Identities=11% Similarity=0.011 Sum_probs=208.2
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEME 228 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~ 228 (577)
.|..+...+...|++++|+..|+++.... +.+..++..+...+...|++++|...++.+.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------------------ 65 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA------------------ 65 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------
Confidence 44555555666666666666666665543 22355566666666666666666655443322
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHcCCChHHHHHHH
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGIS--WNFVTYDTL------------IRGLCSGGRIDDGLKIL 294 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~ 294 (577)
.. +.+...|..+...|...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+.+
T Consensus 66 -~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 66 -LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp -HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 11 114456666666667777777777777766654210 133333333 46677778888888888
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV 373 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (577)
+.+....+ .+...+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|++..+.. +
T Consensus 144 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~ 219 (359)
T 3ieg_A 144 DKILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-Q 219 (359)
T ss_dssp HHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhCC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 87776532 25566777777788888888888888887776554 4556667777778888888888888877752 2
Q ss_pred CCHhhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 374 PNVVIYD------------CLIHAYCQEERVREASELMKEMTGHGYLPI-A----STFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 374 p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
.+...+. .+...+.+.|++++|+..++++.+.. |+ . ..+..+...+...|++++|...+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2333333 33667888999999999999988743 44 2 2344567888999999999999996
Q ss_pred hhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008097 437 DMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICL 494 (577)
Q Consensus 437 ~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~ 494 (577)
.+. ..| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...+..|..+.
T Consensus 298 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 298 VLQ-----MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHH-----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 555 355 778899999999999999999999999984 5566 45566555554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-17 Score=161.98 Aligned_cols=324 Identities=12% Similarity=0.054 Sum_probs=193.4
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHH
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAY 157 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 157 (577)
+..+..+...+...|++++|...|+++++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4455666677777788888888887777753 23566777777777777888887777777653 2455677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC
Q 008097 158 CKEENLVNALVLLEKSFSFGFV--PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN 235 (577)
Q Consensus 158 ~~~~~~~~A~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 235 (577)
...|++++|+..|+++...... .+...+..+.....
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------------------------------ 119 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE------------------------------------------ 119 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH------------------------------------------
Confidence 7888888888888877654310 12222222211110
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...+..+...+...|++++|+..|+++.+.. +.+...+..+...|...|++++|...++.+.... +.+...+..+.
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 195 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKIS 195 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 0112223344555555555555555555432 2344555555555555666666666665555432 22444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCcee-hH------------HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hh
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVD-RS------------LKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VI 378 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~ 378 (577)
..+...|++++|...+++..+..|+... +. .+...+.+.|++++|...|+++.+.... +. ..
T Consensus 196 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 274 (359)
T 3ieg_A 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRS 274 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 5566666666666666665555444322 11 2244566777777887777777765221 22 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~li 456 (577)
|..+...|...|++++|++.+++..+. .| +..++..+...+...|++++|...|++.+. +.|+ ...+..+.
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~-----~~p~~~~~~~~l~ 347 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE-----HNENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCChHHHHHHH
Confidence 445667777888888888888887764 34 566777777888888888888888885444 4563 44444444
Q ss_pred HHH
Q 008097 457 KAL 459 (577)
Q Consensus 457 ~~~ 459 (577)
.+.
T Consensus 348 ~~~ 350 (359)
T 3ieg_A 348 KAQ 350 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-17 Score=157.37 Aligned_cols=290 Identities=11% Similarity=0.035 Sum_probs=213.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 008097 179 VPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDV 258 (577)
Q Consensus 179 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 258 (577)
..+...+..+...+...|++++|.++++.+ .... +.+...+..++..+...|++++|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-------------------l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~ 78 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVV-------------------MEKD-PFHASCLPVHIGTLVELNKANELFYL 78 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHC-TTCTTTHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------HHcC-CCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 344555666666666666666666664433 3221 12455666677777888888888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 259 FNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 259 ~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
++++.+.. +.+...+..+...+...| ++++|.+.|+.+....+ .+...|..+...+...|++++|...++++.+.
T Consensus 79 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 79 SHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK---TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT---TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 88887653 335677777888888888 88888888888876532 25667888888888888888888888888876
Q ss_pred CCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CC
Q 008097 338 FPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG--------YL 408 (577)
Q Consensus 338 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~ 408 (577)
.|+ ...+..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|+..+++..+.. ..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 233 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc
Confidence 665 455666777888888899999988888875 23467888889999999999999999998887521 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHH
Q 008097 409 PIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLT 486 (577)
Q Consensus 409 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 486 (577)
.+..++..+...+...|++++|...+++.+. +.| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 306 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALV-----LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFS 306 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHH
Confidence 3456788888899999999999999996555 344 677888999999999999999999999874 4554 566
Q ss_pred HHHHHHHH-HhcchH
Q 008097 487 WNSLLICL-SQQTTW 500 (577)
Q Consensus 487 ~~~ll~~~-~~~~~~ 500 (577)
|..+..++ ...|+.
T Consensus 307 ~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 307 VTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhCch
Confidence 77777766 445543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.2e-17 Score=155.23 Aligned_cols=290 Identities=11% Similarity=-0.040 Sum_probs=143.3
Q ss_pred CCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 008097 114 PNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLE 190 (577)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 190 (577)
.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.... +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3445555555566666666666666665542 233344455555556666666666666555432 223444555555
Q ss_pred HHHhcC-CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 008097 191 LLCSVG-RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISW 269 (577)
Q Consensus 191 ~~~~~g-~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 269 (577)
.+...| ++++|.+.++.+ .... +.+...|..+...+...|++++|+..|+++.+.. +.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a-------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 157 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKA-------------------TTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KG 157 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHH-------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TT
T ss_pred HHHHhhhhHHHHHHHHHHH-------------------HHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cc
Confidence 555555 455554443322 2111 1134445555555555666666666665555442 22
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL 349 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 349 (577)
+...+..+...|...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+..|....
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------ 228 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN------ 228 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc------
Confidence 33444445555555555555555555555432 113344555555555555555555555554432100000
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
....+.+..+|..+...|...|++++|+..+++..+.. +.+...+..+...+.+.|++++
T Consensus 229 -------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 288 (330)
T 3hym_B 229 -------------------EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFEN 288 (330)
T ss_dssp -------------------SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred -------------------cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHH
Confidence 00012233455555555666666666666666555432 1234455555555566666666
Q ss_pred HHHHHHHhhcccCCCCCC-CcccHHHHHHHH
Q 008097 430 ALKLVEEDMRGIGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~ 459 (577)
|...|++.+. +.| +...+..+..++
T Consensus 289 A~~~~~~al~-----~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 289 AVDYFHTALG-----LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHTTTT-----TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-----cCCCchHHHHHHHHHH
Confidence 6666653222 344 444555555555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-15 Score=157.51 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=85.4
Q ss_pred HHHHHHHHHhh-cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 326 EALEYLKQMEK-LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-V-VIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 326 ~A~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
+|..+|++..+ ..|+ ...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44455554443 3332 233444444445555555555555555552 232 1 3566666666666666666666666
Q ss_pred HHhCCCCCC-HHHHHHHHHH-HHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 402 MTGHGYLPI-ASTFNTVLSG-LCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 402 m~~~g~~p~-~~~~~~ll~~-~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
..+. .|+ ...+...... +...|+.++|..+|++.+. ..| +...|..+++.+.+.|+.++|..++++....
T Consensus 382 Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~-----~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 382 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK-----KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6543 222 2222222212 2245666666666664444 234 4556666666666666666666666666654
Q ss_pred C-CCCC--HHHHHHHHHHHHhcchHH
Q 008097 479 G-ILPD--YLTWNSLLICLSQQTTWL 501 (577)
Q Consensus 479 ~-~~p~--~~~~~~ll~~~~~~~~~~ 501 (577)
+ ..|+ ...|...+.-...+|+.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 2 2222 335666666566666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=163.08 Aligned_cols=298 Identities=12% Similarity=-0.002 Sum_probs=175.7
Q ss_pred HhcCCHhHHHH-HHHhccC-----C--CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 008097 127 CKNGKVGRARS-LMSDMEE-----P--NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV 198 (577)
Q Consensus 127 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 198 (577)
...|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 33466666666 6664432 1 23456666666666666666666666666543 22344555555555555555
Q ss_pred hHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008097 199 MDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLI 278 (577)
Q Consensus 199 ~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 278 (577)
++|...++ +..... +.+..++..+...|...|++++|...|+++.... +.+...+..+.
T Consensus 115 ~~A~~~~~-------------------~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 173 (368)
T 1fch_A 115 LLAISALR-------------------RCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAE 173 (368)
T ss_dssp HHHHHHHH-------------------HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---
T ss_pred HHHHHHHH-------------------HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 54444432 222221 1134445555555555555555555555554432 11111111000
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhhcC
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCVDG 355 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 355 (577)
. ... .. . ....+.. +..+...|++++|...|+++.+..|+ ...+..+...|.+.|
T Consensus 174 ~-------~~~-------~~------~-~~~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 174 E-------GAG-------GA------G-LGPSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp ---------------------------------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H-------Hhh-------hh------c-ccHHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 0 000 00 0 0000112 22233778888888888888887666 456677788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
++++|...|+++... .+.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888898888888875 23457788888899999999999999999888642 2356678888888999999999999988
Q ss_pred HhhcccCCCCCC------------CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 436 EDMRGIGRGSLP------------GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 436 ~~m~~~~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
+.+. +.| ....|..+..+|.+.|++++|..++++.
T Consensus 310 ~al~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 310 EALN-----MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHH-----HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHH-----hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 5554 223 1577888999999999999988877643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-15 Score=150.27 Aligned_cols=395 Identities=10% Similarity=-0.015 Sum_probs=277.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHh----cCCHhH
Q 008097 29 DVVKATDLVSRFNMTPSLKIFNSILDVLVK----E-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCL----TNRVGD 99 (577)
Q Consensus 29 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~ 99 (577)
.+.+.+....+ ..+...+..+-..|.. . ++++|+..|+ ...+.| +...+..|-..|.. .+++++
T Consensus 25 ~~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~-~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 25 VNLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFR-RAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CCHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH-HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHH-HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555555544 2456666677777766 5 8888888888 444433 55666777777777 788888
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHhHHHHHHHhccC-CCceeHHHHHHHHHh----cCChHHHHHHH
Q 008097 100 GFKLLHVMKSRGVKPNSVIYNTLIHSLCK----NGKVGRARSLMSDMEE-PNDVTFSILICAYCK----EENLVNALVLL 170 (577)
Q Consensus 100 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~A~~~~ 170 (577)
|.+.|++..+.| +...+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .++.++|++.|
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 174 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWY 174 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 888888888765 55667777778877 7788888888888764 355667777777776 77888888888
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 008097 171 EKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSY 246 (577)
Q Consensus 171 ~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 246 (577)
++..+.| +...+..+...|.. .++.++|.+.++...+. .+...+..+...|
T Consensus 175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------------------~~~~a~~~lg~~y 229 (490)
T 2xm6_A 175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----------------------GDELGQLHLADMY 229 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------------TCHHHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----------------------CCHHHHHHHHHHH
Confidence 8887764 56777777777777 78888888888886442 1445566666666
Q ss_pred Hh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 247 CE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 247 ~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
.. .+++++|..+|++..+.| +...+..+...|.. .++.++|...|+...+. + +...+..+...|
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~---~~~a~~~Lg~~y 301 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--G---NSDGQYYLAHLY 301 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--T---CHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHH
Confidence 65 678888888888877654 44556666666666 77888888888887754 3 455667777777
Q ss_pred Hhc-----CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh--
Q 008097 319 YRE-----NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG---NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ-- 388 (577)
Q Consensus 319 ~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 388 (577)
... +++++|...|++..+.. +...+..+...|...| +.++|.+.|++..+. .+...+..+...|..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGK 377 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTS
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCC
Confidence 776 78888888888877653 3344555666666655 678888888888875 467778888888887
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCC-C-CcccHHHHHHHHH
Q 008097 389 --EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSL-P-GSGHYSPLIKALC 460 (577)
Q Consensus 389 --~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~-p-~~~~~~~li~~~~ 460 (577)
.+++++|++.|++..+.| +...+..+...|.+ .++.++|..+|++.+. .+.. | +......+..++.
T Consensus 378 g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 378 GVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST---NDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHTTSCH
T ss_pred CCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---CCCCCcCCHHHHHHHHhcCH
Confidence 788888888888888765 45566777777777 7888888888885555 2211 2 4445555555544
Q ss_pred HcCC--hhHHHHHHHHHH
Q 008097 461 EKGG--FQSASMLLVQMV 476 (577)
Q Consensus 461 ~~g~--~~~A~~~~~~m~ 476 (577)
.... .+.|.+++++.+
T Consensus 452 ~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 452 KQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 4322 234777887763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-14 Score=155.42 Aligned_cols=383 Identities=12% Similarity=0.099 Sum_probs=286.0
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMT---PSLKIFNSILDVLVKEDIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
..+|.-....+++|...|.+.+|+++++++.-. +. .+....|.++.+..+.+..+..++.. ... .+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~-kLd-------~~d~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKADRTRVMEYIN-RLD-------NYDA 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHhChhhHHHHHH-Hhh-------hccH
Confidence 346667788999999999999999999999732 22 34566777777777777777777766 332 2223
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChH
Q 008097 85 AILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 85 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 164 (577)
.-+...+...|.+++|..+|++... .....+.+ +-..|++++|.++.++.. +..+|..+..++...|+++
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 4467778899999999999998621 11222223 237899999999999874 4678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+|++.|.+. -|...|..++.++.+.|++++|.+.+..+.+ .. ++....+.++.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-------------------~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-------------------KA--RESYVETELIF 1175 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------------------hc--ccccccHHHHH
Confidence 999999764 4678888999999999999999888654322 21 23333445888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
+|++.+++++.... .. .++...|..+...|...|++++|..+|..+ ..|..+...+.+.|++
T Consensus 1176 aYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCH
Confidence 89999888853333 22 456677778889999999999999999875 2688999999999999
Q ss_pred HHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 325 DEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
++|.+.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+.+++....
T Consensus 1238 q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1238 QAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999887 345778888888888899888888776543 3666777899999999999999999988775
Q ss_pred CCCCCCH-HHHHHH--HHHHHhcCCHHHHHHHHHHhhcccCCCCCC------CcccHHHHHHHHHHcCChhHHHH
Q 008097 405 HGYLPIA-STFNTV--LSGLCRQGNVGTALKLVEEDMRGIGRGSLP------GSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 405 ~g~~p~~-~~~~~l--l~~~~~~g~~~~a~~~~~~~m~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
. .|.+ ..|.-+ +.+-.+-++..++.++|...+. ++| +..+|.-++-.|.+.|+++.|..
T Consensus 1309 L--eraH~gmftELaiLyaKy~peklmEhlk~f~~rin-----i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1309 L--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN-----IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred c--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-----cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3 3432 345344 4444556677778888774333 333 56779999999999999998884
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-14 Score=147.07 Aligned_cols=352 Identities=11% Similarity=0.016 Sum_probs=286.9
Q ss_pred CHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHhHHHHHHHhccC-CCceeH
Q 008097 80 DDYTYAILMKGLCL----TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK----NGKVGRARSLMSDMEE-PNDVTF 150 (577)
Q Consensus 80 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~ 150 (577)
++..+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|...|++..+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66677777777777 899999999999999875 56788889999998 8999999999999875 466778
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHH
Q 008097 151 SILICAYCK----EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCR 222 (577)
Q Consensus 151 ~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~ 222 (577)
..|...|.. .+++++|+..|++....| +...+..+...|.. .++.++|.+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~------------------ 173 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW------------------ 173 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH------------------
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH------------------
Confidence 888888888 789999999999998865 45667777777765 5566666655
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHH
Q 008097 223 FLKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKIL 294 (577)
Q Consensus 223 ~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~ 294 (577)
|+...+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|
T Consensus 174 -~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 174 -YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp -HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 44444443 67788888888887 899999999999998865 56777778888876 78999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhc-----CCHHHHHHHHH
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVD-----GNVEDAKRCFD 365 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 365 (577)
+...+. + +...+..+...|.. .++.++|...|++..+.. +...+..+...|... ++.++|...|+
T Consensus 247 ~~a~~~--~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 247 SQSAEQ--G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHTT--T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHC--C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 998875 3 55677778888887 899999999999987653 344566677777776 89999999999
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 008097 366 QMIEEGGVPNVVIYDCLIHAYCQEE---RVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDM 438 (577)
Q Consensus 366 ~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m 438 (577)
+..+.+ +...+..+...|...| ++++|++.|++..+.| +...+..+...|.. .++.++|..+|++..
T Consensus 321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999863 5678888888888766 7899999999999864 56778888888888 899999999999655
Q ss_pred cccCCCCCCCcccHHHHHHHHHH----cCChhHHHHHHHHHHHCCC
Q 008097 439 RGIGRGSLPGSGHYSPLIKALCE----KGGFQSASMLLVQMVGKGI 480 (577)
Q Consensus 439 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 480 (577)
. ..++..+..|..+|.+ .+++++|...+++..+.+.
T Consensus 395 ~------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 395 E------QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp H------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred h------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 2357788889999998 8999999999999997653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-18 Score=162.49 Aligned_cols=399 Identities=12% Similarity=0.121 Sum_probs=180.0
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 008097 23 RARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGF 101 (577)
Q Consensus 23 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 101 (577)
+.|++++|.+.++++. .| .+|..+..++.+. ++++|++.|. . .+|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfi-k------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYI-K------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHH-c------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 7788999999999993 23 4899999999999 9999999997 2 367889999999999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008097 102 KLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPD 181 (577)
Q Consensus 102 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~ 181 (577)
+.++...+. .+++.+.+.++.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 988877774 45678899999999999999999988864 78889999999999999999999999976
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 008097 182 VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFND 261 (577)
Q Consensus 182 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (577)
..|..++.++.+.|++++|.+.+.. + .++.+|..++.+|...|+++.|......
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~K-------------------A------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARK-------------------A------NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHH-------------------H------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHH-------------------c------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 4899999999999999999887543 2 2789999999999999999999666554
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc--CCHHHHHHHHHHHhhcCC
Q 008097 262 MKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE--NQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 262 m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~p 339 (577)
+. +.|+ -...++..|.+.|++++|..+++.....+ +.....|+-+.-.|++- ++..+.++.|..-..++|
T Consensus 203 L~---~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 203 IV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TT---TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HH---hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 32 2343 35578899999999999999999988652 23455677776666654 445555555554433333
Q ss_pred ------CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008097 340 ------RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAST 413 (577)
Q Consensus 340 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 413 (577)
+...|.-++..|.+.++++.|... |.+. +|+.---..+.+...+-.+.+--.+...--.+ ..|. .
T Consensus 275 ~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~--~ 345 (449)
T 1b89_A 275 VLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPL--L 345 (449)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGG--G
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHH--H
Confidence 466788888888999999988763 4442 23322223333333344433322222222221 2343 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHH
Q 008097 414 FNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMV-GKGILPDYLTWNSLLI 492 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~ 492 (577)
++.++.++...=+...+.++|+ . .+.-|-+..|-.-+ +..+....-+.+.++. + +-|..+.+.-|.
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~-~-----~~~l~l~~~yl~~v----~~~n~~~vnealn~l~ie---eed~~~lr~si~ 412 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFS-K-----VKQLPLVKPYLRSV----QNHNNKSVNESLNNLFIT---EEDYQALRTSID 412 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHH-H-----TTCTTTTHHHHHHH----HTTCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHH-H-----cCCcHHHHHHHHHH----HHhhHHHHHHHHHHHHHh---hhhHHHHHHHHH
Confidence 5566666666666666666666 2 22334333332111 1223333333333332 1 235556666666
Q ss_pred HHHhcchHHHH
Q 008097 493 CLSQQTTWLLL 503 (577)
Q Consensus 493 ~~~~~~~~~~~ 503 (577)
+|-.-....++
T Consensus 413 ~~~nfd~~~l~ 423 (449)
T 1b89_A 413 AYDNFDNISLA 423 (449)
T ss_dssp HCCCSCHHHHH
T ss_pred HhcCcCHHHHH
Confidence 65544444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-15 Score=150.55 Aligned_cols=403 Identities=11% Similarity=0.026 Sum_probs=242.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAI 86 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ 86 (577)
|-+..+|..++.. .+.|++++|+.+|+.+.+.. +.+...|...+..+.+. ++++|..+|+ ..... .|+...|..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~-ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQ-RCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH-HHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhc--CCChHHHHH
Confidence 5678889999984 78899999999999998854 34788899999999988 9999999999 55543 467777777
Q ss_pred HHHHH-HhcCCHhHHHH----HHHHHHhC-CCCC-CcchHHHHHHHHHh---------cCCHhHHHHHHHhccC-CCc--
Q 008097 87 LMKGL-CLTNRVGDGFK----LLHVMKSR-GVKP-NSVIYNTLIHSLCK---------NGKVGRARSLMSDMEE-PND-- 147 (577)
Q Consensus 87 ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~-- 147 (577)
.+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|+++.|+.+|++..+ |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77543 35677777765 77766553 5444 45678888877665 7899999999999875 322
Q ss_pred -eeHHHHHHHH-------------HhcCChHHHHHHHHHHH------hCC---CCCCH--------hhHHHHHHHHHhcC
Q 008097 148 -VTFSILICAY-------------CKEENLVNALVLLEKSF------SFG---FVPDV--------VTITKVLELLCSVG 196 (577)
Q Consensus 148 -~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~g---~~~~~--------~~~~~ll~~~~~~g 196 (577)
..|....... .+.+++.+|..++.+.. +.. +.|+. ..|...+......+
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 2333222211 12345666766665521 111 23321 22222221111100
Q ss_pred CHhHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCChh-------HHHHH
Q 008097 197 RVMDAVEILEESGEQGRLGKV----KGGCRFLKEMERKGCLPNVDTYNILISSYCE-------TGVLD-------SALDV 258 (577)
Q Consensus 197 ~~~~a~~~~~~~~~~~~~g~~----~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~ 258 (577)
...++. ..+..+|++..... +-+...|......+.+ .|+++ +|..+
T Consensus 245 ---------------~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 245 ---------------LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp ---------------SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ---------------ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 001111 23445566665542 2267788888887775 68877 88888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 008097 259 FNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI-SPYNSVLYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 259 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+..+. +. ..|..++..+.+.|++++|.++|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 888875222445777888888888888888888888888875211 22 36777777777777777777777777665
Q ss_pred CCCcee-hHHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HH
Q 008097 338 FPRAVD-RSLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-YLPI--AS 412 (577)
Q Consensus 338 ~p~~~~-~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~ 412 (577)
.|.... +..... .+...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|++....+ ..|+ ..
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 443211 111111 122355555555555555543 12234555555555555555555555555555432 1221 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 008097 413 TFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 413 ~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.|...+......|+.+.+..+++
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444555555555554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-17 Score=158.97 Aligned_cols=257 Identities=12% Similarity=0.013 Sum_probs=210.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++....+ .+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHH
Confidence 45668999999999999999999999998764 45788999999999999999999999999998733 267789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCce-----------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAV-----------DRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PNVVIYDCL 382 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l 382 (577)
...|...|++++|...|+++.+..|+.. .+..+...|.+.|++++|...|+++.+.... ++..+|..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999999988766422 2233477889999999999999999986322 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 383 IHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
...|...|++++|++.|+++.+.. +.+..++..+..+|...|++++|...|++.+. +.| +...|..+..+|.+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE-----IQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHH
Confidence 999999999999999999999743 33677899999999999999999999996666 456 57889999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcchHHHH
Q 008097 462 KGGFQSASMLLVQMVGKGILPD-------------YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~~ 503 (577)
.|++++|.+.++++.+. .|+ ..+|..|-.++...|..++.
T Consensus 294 ~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 99999999999998853 222 46688888887777776544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-17 Score=157.20 Aligned_cols=301 Identities=11% Similarity=-0.049 Sum_probs=193.4
Q ss_pred HHHhcCCHhHHHH-HHHHHHhCCCC---CCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCC
Q 008097 90 GLCLTNRVGDGFK-LLHVMKSRGVK---PNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEEN 162 (577)
Q Consensus 90 ~~~~~~~~~~a~~-~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 162 (577)
++...|++++|.. .+++..+.... .+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 5567789999998 88866654321 1356788899999999999999999999874 456788999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNIL 242 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 242 (577)
+++|+..|+++.... +.+..++..+...+...|++++|...+ +.+...... +...+..+
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------~~~~~~~~~-~~~~~~~~ 172 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL-------------------RDWLRYTPA-YAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH-------------------HHHHHTSTT-TGGGCC--
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH-------------------HHHHHhCcC-cHHHHHHH
Confidence 999999999998765 346788889999999888888888774 444444222 22222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcC
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYREN 322 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 322 (577)
... .. . ..+. ..+..+.. +...|++++|...|+.+....+.. ++..++..+...+.+.|
T Consensus 173 ~~~-------~~-------~----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 173 EEG-------AG-------G----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp --------------------------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTT
T ss_pred HHH-------hh-------h----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcC
Confidence 000 00 0 0000 01111111 224566666666666665542211 13445556666666666
Q ss_pred CHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 323 QQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 323 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
++++|...++++.+..|+ ...+..+...|.+.|++++|...|+++.+. .+.+..+|..+...|.+.|++++|...|++
T Consensus 232 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 232 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666655443 345566666677777777777777777664 234577888888999999999999999988
Q ss_pred HHhCCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 402 MTGHGYLPI------------ASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 402 m~~~g~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+.+. .|+ ..+|..+..++...|+.++|..+++
T Consensus 311 al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 311 ALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 8753 221 5678889999999999999988876
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=156.09 Aligned_cols=270 Identities=10% Similarity=-0.026 Sum_probs=211.4
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...+..+...+.+.|++++|...++.++ ... +.+..+|..+...|...|++++|+..|+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al-------------------~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI-------------------LQD-PGDAEAWQFLGITQAENENEQAAIVALQ 123 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH-------------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------HhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44568888888888888888888765543 322 2367889999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-------CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-------RISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
++.+.. +.+..++..+...|...|++++|...|+.+....+.... ....+..+...+.+.|++++|...+++
T Consensus 124 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 124 RCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 998764 446889999999999999999999999999875322110 112234457889999999999999999
Q ss_pred HhhcCCC---ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 008097 334 MEKLFPR---AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP- 409 (577)
Q Consensus 334 ~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 409 (577)
+.+..|+ ...+..+...|...|++++|...|+++.+. .+.+..+|+.+..+|...|++++|+..|+++.+. .|
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~ 279 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPG 279 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 9998775 567888889999999999999999999986 3446889999999999999999999999999974 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC--------CCcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL--------PGSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
+..++..+..+|.+.|++++|...|++.+........ .+...|..+..++...|+.+.|....++
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4778999999999999999999999965551101001 1367899999999999999998887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-14 Score=147.75 Aligned_cols=366 Identities=11% Similarity=-0.012 Sum_probs=212.9
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C---CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC-------C
Q 008097 81 DYTYAILMKGLCLTNRVGDGFKLLHVMKSR-----G---VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE-------P 145 (577)
Q Consensus 81 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 145 (577)
...|+.+...+...|++++|++.|++.++. + -+....+|+.+..+|...|++++|...|++..+ +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777777777778888887777766442 1 112345677777778888888888777766532 1
Q ss_pred ----CceeHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHH---HhcCCHhHHHHHHHHHHHhhhcC
Q 008097 146 ----NDVTFSILICAYCK--EENLVNALVLLEKSFSFGFVPD-VVTITKVLELL---CSVGRVMDAVEILEESGEQGRLG 215 (577)
Q Consensus 146 ----~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~g 215 (577)
...+++.+..++.. .+++++|+..|++..... |+ +..+..+..++ ...++.++|.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~----------- 197 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDP----------- 197 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHH-----------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHH-----------
Confidence 12234444444443 346788888888877643 33 34444444332 233444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 216 KVKGGCRFLKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
+++..+... .+...+..+...+.. .|++++|...+++..... +.+..++..+...|...|++++|.
T Consensus 198 --------~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 198 --------LRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp --------HHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------HHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 333333221 134445444444433 456777888888776653 445667777888888888888888
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHh-------------------cCCHHHHHHHHHHHhhcCCC-ceehHHHHHHh
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYR-------------------ENQQDEALEYLKQMEKLFPR-AVDRSLKILGF 351 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 351 (577)
..+++..+..|. +..++..+...|.. .+..++|...+++..+..|+ ...+..+...|
T Consensus 268 ~~~~~al~~~p~---~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 268 ELLKKALEYIPN---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHHHHSTT---CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 888887765322 44555555554432 13356778888888776654 56678888899
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008097 352 CVDGNVEDAKRCFDQMIEEGGVPNVV--IYDCLIH-AYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 428 (577)
...|++++|...|++..+....|... .+..+.. .+...|++++|+..|++..+ +.|+....... ..
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KD 413 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HH
Confidence 99999999999999998854332211 2233332 34467899999999999887 45664433222 23
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKG-ILPDYLTWN 488 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~ 488 (577)
.+.+++++.+. ..| +...|..+..+|...|++++|.+.+++..+.+ ..|+..+|.
T Consensus 414 ~l~~~~~~~l~-----~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLS-----KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHH-----HCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 34455554444 345 78899999999999999999999999998653 346665553
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=175.28 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=107.6
Q ss_pred ceehHHHHHHhhhcCCHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008097 341 AVDRSLKILGFCVDGNVEDAKRCFDQMIE---EGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTV 417 (577)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 417 (577)
..+|+++|++||++|++++|.++|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788888888888888888888877764 378888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 008097 418 LSGLCRQGN-VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD 483 (577)
Q Consensus 418 l~~~~~~g~-~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 483 (577)
|.++++.|+ .++|.++|+ .|. ..|+.||..+|++++..+.|.+ +++.++++ ..+++|+
T Consensus 207 I~glcK~G~~~e~A~~Ll~-EM~--~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLE-QMS--QEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHH-HHH--HHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCC
T ss_pred HHHHHhCCCcHHHHHHHHH-HHH--HcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCC
Confidence 888888887 477888888 888 7888888888888887777653 34444444 3345554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-18 Score=177.30 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=127.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEK-----LFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
-..+||++|++|++.|++++|.++|.+|.+ ..||.++||++|++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------cccHHH
Q 008097 382 LIHAYCQEER-VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------SGHYSP 454 (577)
Q Consensus 382 li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------~~~~~~ 454 (577)
+|.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+-++...++. .+..|+ .-+...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~--------P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK--------PTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC--------CCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC--------cccCCCCCCcccccchHH
Confidence 9999999998 4789999999999999999999999998877754444433332 233332 445566
Q ss_pred HHHHHHHcCC
Q 008097 455 LIKALCEKGG 464 (577)
Q Consensus 455 li~~~~~~g~ 464 (577)
|.+.|.+.+.
T Consensus 278 L~dl~s~d~~ 287 (1134)
T 3spa_A 278 LRDVYAKDGR 287 (1134)
T ss_dssp THHHHCCCSC
T ss_pred HHHHHccCCC
Confidence 7788877764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-13 Score=146.12 Aligned_cols=343 Identities=13% Similarity=0.140 Sum_probs=255.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcC
Q 008097 84 YAILMKGLCLTNRVGDGFKLLHVMKSRG--VKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEE 161 (577)
Q Consensus 84 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 161 (577)
-....++|...|.+.+|.++++++.-.+ +..+....+.|+....+. +..+..+..++....+ ..-+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556788888888888888888887432 112345666677776666 5566666655555322 455677788888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI 241 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 241 (577)
.+++|..+|++.. -.....+.++. ..+++++|.++ .++. -+..+|..
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~-------------------Aerv------n~p~vWsq 1110 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEF-------------------AERC------NEPAVWSQ 1110 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHH-------------------HHhc------CCHHHHHH
Confidence 8888888888741 11111222221 34445555444 4433 15788999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
+..++...|++++|+..|.+. -|...|..++.+|.+.|++++|.+.+....+. . ++....+.++.+|++.
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--~--~e~~Idt~LafaYAKl 1180 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A--RESYVETELIFALAKT 1180 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--c--ccccccHHHHHHHHhh
Confidence 999999999999999999664 37788889999999999999999999987765 2 2333445699999999
Q ss_pred CCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 322 NQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
+++++...+. ..++...+..+...|...|++++|..+|... ..|..+...|.+.|++++|++.+++
T Consensus 1181 ~rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1181 NRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred cCHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9988644442 2455566777888999999999999999985 3799999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 008097 402 MTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 402 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 481 (577)
.. +..+|..+-.+|...|++..|..... . +..+++.+..++..|.+.|.+++|..+++... ++.
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl-~-------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~Le 1310 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGL-H-------IVVHADELEELINYYQDRGYFEELITMLEAAL--GLE 1310 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHH-h-------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccC
Confidence 73 45799999999999999999988766 3 34567788899999999999999999998887 455
Q ss_pred CC-HHHHHHHHHHHHhcchHHHH
Q 008097 482 PD-YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 482 p~-~~~~~~ll~~~~~~~~~~~~ 503 (577)
|. ...|.-|-..+++..-.++.
T Consensus 1311 raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHH
Confidence 44 35677787777777655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=146.53 Aligned_cols=375 Identities=10% Similarity=0.081 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
+++.+|..|+.++.+.|++++|++.|.+. ++...|..++..+... ++++|+..++ ..++. .+++.+.+.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~-~ark~--~~~~~i~~~L 100 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ-MARKK--ARESYVETEL 100 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHh--CccchhHHHH
Confidence 45569999999999999999999999764 5667899999998888 9999999777 44442 4567889999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
+.+|.+.|++.++.++++ .|+..+|+.+...|...|.+++|...|.++ ..|..++.++.+.|++++|+
T Consensus 101 i~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 101 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp --------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHH
Confidence 999999999999988774 367789999999999999999999999988 48999999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYC 247 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 247 (577)
+.++++ .++.+|..++.+|...|+++.|...... +..++.....++..|.
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------------------------L~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------------------------IVVHADELEELINYYQ 218 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------------------------TTTCHHHHHHHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------------------------HHhCHhhHHHHHHHHH
Confidence 999988 2789999999999999999999654211 1123344556889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC--CChHHHHHHHHHHHhccCCCCC------CcccHHHHHHHHH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG--GRIDDGLKILQLMEDSKEGSKG------RISPYNSVLYGLY 319 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~li~~~~ 319 (577)
+.|++++|..+++...... +.....|+-+.-.|++- +++.+..+.|..-. ..+| +...|..+...|.
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i----ni~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV----NIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS----CHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988654 44566677776666654 45555555554221 1111 4677999999999
Q ss_pred hcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008097 320 RENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELM 399 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 399 (577)
+.++++.|.. .|.+..|+...-.. |.+++.+ ..|...|-..+.-|... .+ .++.-+
T Consensus 294 ~~~e~d~A~~---tm~~h~~~a~~~~~-----------------f~~~~~k--v~n~elyYkai~fyl~~-~p-~~l~~l 349 (449)
T 1b89_A 294 KYEEYDNAII---TMMNHPTDAWKEGQ-----------------FKDIITK--VANVELYYRAIQFYLEF-KP-LLLNDL 349 (449)
T ss_dssp HTTCHHHHHH---HHHHSTTTTCCHHH-----------------HHHHHHH--CSSTHHHHHHHHHHHHH-CG-GGHHHH
T ss_pred hhchHHHHHH---HHHhCChhhhhhHH-----------------HHHHHhc--hhHHHHHHHHHHHHHhc-CH-HHHHHH
Confidence 9999998875 44444444443333 3333332 23444555555555411 11 222222
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 400 KEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
-......+.| ..++..+.+.|.+.-...++. .++ . .-+..+=.++-+.|....+++.-..-++.
T Consensus 350 l~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl~-~v~--~---~n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 350 LMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLR-SVQ--N---HNNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHHH-HHH--T---TCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhccCc-----HHHHHHHHHcCCcHHHHHHHH-HHH--H---hhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2222111222 233444566666666666666 555 1 22344445566666777666555544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-15 Score=144.48 Aligned_cols=256 Identities=11% Similarity=0.006 Sum_probs=211.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|...++.+....+ .+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHH
Confidence 45567788888999999999999999998764 44778888899999999999999999999988632 266788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHH--------------H--HhhhcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKI--------------L--GFCVDGNVEDAKRCFDQMIEEGGVPNVVI 378 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~--------------~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 378 (577)
...+...|++++|...++++.+..|+.......+ . .+...|++++|...++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 9999999999999999999988776554333322 3 3788899999999999999863 347889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
+..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|...|++.+. ..| +...|..+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD-----INPGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCHHHHHHHHH
Confidence 9999999999999999999999998753 33577899999999999999999999996555 345 6788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcchHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMVGKGILPD-------------YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~~~~~~~ 503 (577)
+|.+.|++++|.+.++++.+. .|+ ..+|..+..++...|+.+.+
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999853 444 56788888888888876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-15 Score=143.79 Aligned_cols=264 Identities=10% Similarity=-0.011 Sum_probs=212.2
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+...+......+...|++++|..+++.+ .+... .+...|..+...+...|++++|...|+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~-------------------~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 79 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAV-------------------CQAAP-EREEAWRSLGLTQAENEKDGLAIIALN 79 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHH-------------------HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHH-------------------HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445666777777888888877775544 33322 267788899999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH--------------HH-HHHhcCCHH
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV--------------LY-GLYRENQQD 325 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~ 325 (577)
++.+.. +.+..++..+...|...|++++|.+.++.+....+. +...+..+ .. .+...|+++
T Consensus 80 ~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 80 HARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT---TTTC--------------------CCTTSHHHHH
T ss_pred HHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHH
Confidence 998763 447788999999999999999999999999876333 33334333 22 377889999
Q ss_pred HHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 326 EALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 326 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...++++.+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|++.|+++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999987664 5667788889999999999999999998863 34678999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-------------cccHHHHHHHHHHcCChhHHHHH
Q 008097 405 HGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-------------SGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 405 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
.. +.+..++..+...+...|++++|...+++.+. ..|+ ...|..+..+|.+.|++++|..+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY-----MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 43 33577899999999999999999999996555 2333 67889999999999999999998
Q ss_pred HHHH
Q 008097 472 LVQM 475 (577)
Q Consensus 472 ~~~m 475 (577)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 8754
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-15 Score=139.40 Aligned_cols=247 Identities=10% Similarity=0.029 Sum_probs=153.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDV--VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
....|++++|+..+++.... .|+. .....+..+|...|+++.|...++ . .-+|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~-------------------~----~~~~ 63 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIK-------------------P----SSAP 63 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSC-------------------T----TSCH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhc-------------------c----cCCh
Confidence 34456666666666554322 2322 233445566666666666554321 1 1234
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
+..++..+...+...|+.++|++.++++...+..| +...+..+...+.+.|++++|.+.++. +.+...+..
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~ 135 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHH
Confidence 55566666667777777777777777776655434 344555555677777777777777765 125556667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCceehH---HHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRAVDRS---LKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
++..+.+.|++++|.+.|+++.+..|+..... ..+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 77777777777777777777776666543211 1223333457777888888877776 4456777888888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHhhc
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT-ALKLVEEDMR 439 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~m~ 439 (577)
++++|.+.|++..+. .| +..++..++..+...|+.++ +.+++++.+.
T Consensus 215 ~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 215 RWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 888888888887763 34 55667777777777777765 4577764444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-15 Score=139.74 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=132.5
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHH
Q 008097 91 LCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLL 170 (577)
Q Consensus 91 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 170 (577)
....|++..|+...+........+.......+.++|...|+++.|...++....|+..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 33456666666666554432211112233445566666676666666665543444455556666666666666666666
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 008097 171 EKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCET 249 (577)
Q Consensus 171 ~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 249 (577)
+++...+..|+ ...+..+..++...|++++|.+.++ . +.+...+..+...|.+.
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~-------------------~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-------------------Q------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHT-------------------T------CCSHHHHHHHHHHHHHT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHh-------------------C------CCCHHHHHHHHHHHHHC
Confidence 66665554343 3334444455555555555555431 1 12455555555566666
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHH---HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTY---DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (577)
|++++|...|+++.+. .|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.
T Consensus 144 g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~---p~~~~~~~~la~~~~~~----- 213 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC---SPTLLLLNGQAACHMAQ----- 213 (291)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHT-----
T ss_pred CCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHc-----
Confidence 6666666666665554 2332111 112222333355555555555555441 12444444455555544
Q ss_pred HHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 008097 327 ALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE-ASELMKEMTGH 405 (577)
Q Consensus 327 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 405 (577)
|++++|...|+++.+. .+.+..+|..++..+...|+.++ +.++++++.+
T Consensus 214 ----------------------------g~~~eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~- 263 (291)
T 3mkr_A 214 ----------------------------GRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD- 263 (291)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-
T ss_pred ----------------------------CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 5555555555554443 12355566666666666776654 4566666665
Q ss_pred CCCCCHH
Q 008097 406 GYLPIAS 412 (577)
Q Consensus 406 g~~p~~~ 412 (577)
+.|+..
T Consensus 264 -~~P~~~ 269 (291)
T 3mkr_A 264 -AHRSHP 269 (291)
T ss_dssp -HCTTCH
T ss_pred -hCCCCh
Confidence 335433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-13 Score=140.01 Aligned_cols=373 Identities=11% Similarity=-0.041 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---h-cC--CCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCC----
Q 008097 44 PSLKIFNSILDVLVKE-DIDLARAFYRKKMM---A-SG--VQG-DDYTYAILMKGLCLTNRVGDGFKLLHVMKSRG---- 111 (577)
Q Consensus 44 ~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~---~-~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---- 111 (577)
.....||.+-..+... ++++|++.|++.+. . .+ ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3466788887777777 99999999884321 1 11 122 35678889999999999999999998876531
Q ss_pred --CCC-CcchHHHHHHHHHhc--CCHhHHHHHHHhccC--CC-ceeHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCC
Q 008097 112 --VKP-NSVIYNTLIHSLCKN--GKVGRARSLMSDMEE--PN-DVTFSILICA---YCKEENLVNALVLLEKSFSFGFVP 180 (577)
Q Consensus 112 --~~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g~~~ 180 (577)
..+ ...++..+..++.+. +++++|...|++..+ |+ ...+..+... +...++.++|++.|++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 111 234555555555554 579999999998764 44 4444444444 345688889999999887654 23
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
+..++..+...+...+.. .++.++|.+.+++...... .+...+..+...|...|++++|...|+
T Consensus 208 ~~~~~~~l~~~~~~~~~~---------------~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREE---------------GEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp CHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 455666665555544321 2333444444555554432 367788899999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcC-------------------CChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 261 DMKIDGISWNFVTYDTLIRGLCSG-------------------GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 261 ~m~~~g~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
+..+.. +-+..++..+...|... +..+.|...++.....++ .+..++..+...+...
T Consensus 272 ~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 272 KALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND---NLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT---TTCCCHHHHHHHHHHT
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC---chhhhhhhHHHHHHHh
Confidence 998763 33556666665554321 235678888888877633 3667899999999999
Q ss_pred CCHHHHHHHHHHHhhcCCCceeh----HHHHH-HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 008097 322 NQQDEALEYLKQMEKLFPRAVDR----SLKIL-GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREAS 396 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~~~----~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 396 (577)
|++++|...|++..+..|+.... ..+.. .+...|+.++|+..|++..+. .|+...+... ...+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHH
Confidence 99999999999998877664432 22222 245789999999999999984 5554333222 23445
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCccc
Q 008097 397 ELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGH 451 (577)
Q Consensus 397 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~ 451 (577)
+++++....+ +.+..+|..+...+...|++++|.+.|++.+. -....|+...
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe--~~~~~p~a~~ 468 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE--SGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCcHhh
Confidence 5666666532 34667899999999999999999999997776 2333454433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-14 Score=134.28 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=190.9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC----cccH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR----ISPY 311 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 311 (577)
...|..+...+...|++++|+..|++..+.. .+..++..+...|...|++++|...++......+...++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567788888999999999999999998876 678889999999999999999999999888764333223 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
..+...+...|++++|...|+++.+..|+. ..+.+.|++++|...++++... .+.+...|..+...|...|+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV-NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc-CcchHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999887773 4566778899999999999885 22356788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
+++|++.|++..+.. +.+..++..+...+...|++++|...|++.+. ..| +...|..+..+|.+.|++++|.+
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-----KDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999998753 33677899999999999999999999996665 345 57889999999999999999999
Q ss_pred HHHHHHH
Q 008097 471 LLVQMVG 477 (577)
Q Consensus 471 ~~~~m~~ 477 (577)
.+++..+
T Consensus 229 ~~~~a~~ 235 (258)
T 3uq3_A 229 TLDAART 235 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=127.20 Aligned_cols=194 Identities=17% Similarity=0.109 Sum_probs=97.3
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 234 PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 234 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.+|. +...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHH
Confidence 455666666677777777777777777766542 335566666666777777777777777776665322 4455666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 008097 314 VLYGLYRE-----------NQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDC 381 (577)
Q Consensus 314 li~~~~~~-----------g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 381 (577)
+...+.+. |++++|+..+++..+..|+. ..+..+...|...|++++|+..|++..+.. .+...|..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 66666665 55555555555555544432 233334444444444444444444444433 34444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+..+|...|++++|+..|++..+. .| +...+..+...+...|++++|+..|+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444444432 12 23334444444444444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-13 Score=128.95 Aligned_cols=243 Identities=13% Similarity=-0.027 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHHHcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 008097 215 GKVKGGCRFLKEMERKGC---LPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGL 291 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 291 (577)
|++++|...|+++.+... +.+...|..+...|...|++++|...|+++.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 344555555666655421 1145677888888888899999999998888763 346778888888888889999999
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcC
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEG 371 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (577)
..|+.+....+. +...+..+...+.+.|++++|...|+++.+..|+.......+..+...|++++|...|++....
T Consensus 98 ~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 98 EAFDSVLELDPT---YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHCTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCcc---ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999888876332 5677888888888889999998888888887777665555555566778888888888777765
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC
Q 008097 372 GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL 446 (577)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~ 446 (577)
.+++...|. ++..+...++.++|++.+++..... |+ ..++..+...+.+.|++++|...|++.+. +.
T Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~ 245 (275)
T 1xnf_A 174 SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN--TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA-----NN 245 (275)
T ss_dssp SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC
T ss_pred CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc--ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC
Confidence 233444444 6666777777888888888876532 32 45677788888888888888888885544 34
Q ss_pred CCcccHHHHHHHHHHcCChhHHHHHH
Q 008097 447 PGSGHYSPLIKALCEKGGFQSASMLL 472 (577)
Q Consensus 447 p~~~~~~~li~~~~~~g~~~~A~~~~ 472 (577)
|+. +.....++...|++++|.+.+
T Consensus 246 p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CTT--CHHHHHHHHHHHHHHHC----
T ss_pred chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 522 333455677777887777665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-13 Score=123.63 Aligned_cols=198 Identities=14% Similarity=0.002 Sum_probs=161.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
+++...+..+...+.+.|++++|...|+...+.+|. +...+..+...+.+.|++++|+..+++..+..|+. ..+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 567788888999999999999999999999986433 67789999999999999999999999999988865 56777
Q ss_pred HHHHhhhc-----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008097 347 KILGFCVD-----------GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFN 415 (577)
Q Consensus 347 l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 415 (577)
+...|.+. |++++|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 88888898 99999999999999863 2357889999999999999999999999999876 6788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 416 TVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 416 ~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+..++...|++++|...|++.+. ..| +...+..+..++.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~-----~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALE-----QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999996666 567 77889999999999999999999998864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.4e-13 Score=123.55 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=160.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEM 227 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~ 227 (577)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...++.+... -
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---------------~ 68 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ---------------G 68 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---------------C
Confidence 356777788888999999999999988776 77888899999999999999999887765432 1
Q ss_pred HHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Q 008097 228 ERKGCLPN----VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG 303 (577)
Q Consensus 228 ~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 303 (577)
... .|+ ...|..+...|...|++++|...|++.... .|+. ..+.+.|++++|...++.+....+
T Consensus 69 ~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~- 136 (258)
T 3uq3_A 69 REM--RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP- 136 (258)
T ss_dssp HHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-
T ss_pred ccc--ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-
Confidence 111 112 567888888999999999999999998875 3443 345566778888888888876521
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 304 SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
.+...+..+...+...|++++|...++++.+..|+ ...+..+...|.+.|++++|...|++..+.. +.+...|..+
T Consensus 137 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 213 (258)
T 3uq3_A 137 --EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRK 213 (258)
T ss_dssp --HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHH
Confidence 24456777777777778888888777777765544 3445556666667777777777777766642 2345666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 008097 383 IHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~ 404 (577)
...|...|++++|.+.|++..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 6667777777777776666654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-12 Score=128.69 Aligned_cols=349 Identities=13% Similarity=0.017 Sum_probs=222.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCH---hHHHHHHHhccCCCceeHHHHHHHHHhcC--
Q 008097 87 LMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKV---GRARSLMSDMEEPNDVTFSILICAYCKEE-- 161 (577)
Q Consensus 87 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-- 161 (577)
+...+.+.|++++|.+.|.+..+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4556667888888888888888765 444555566667777877 88988888887777777777777555555
Q ss_pred ---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 162 ---NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 162 ---~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
+.++|+..|++....|.. ..+..+...|...+..+.+.+ +...+......| +...
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~----------------a~~~~~~a~~~g---~~~a 143 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVN----------------AQQQISQWQAAG---YPEA 143 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCC----------------HHHHHHHHHHHT---CTTH
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHH----------------HHHHHHHHHHCC---CHHH
Confidence 678999999998886632 366667777766554433322 223344444333 4566
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC---ChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG---RIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
+..+...|...+.++++........+.-...++..+..+...|.+.| +.++|.+.|+...+. + .++...+..+.
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~--g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR--G-TVTAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT--T-CSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC--C-CHHHHHHHHHH
Confidence 77777788877766555544333332212223347778888888888 888999999888876 3 22333346677
Q ss_pred HHHHhc----CCHHHHHHHHHHHhhcCCCceehHHHHHH-h--hhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 316 YGLYRE----NQQDEALEYLKQMEKLFPRAVDRSLKILG-F--CVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 316 ~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
..|... +++++|...|++.. ..+...+..+... | ...+++++|...|++..+.| +...+..+...|.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 777655 78999999999887 3344555556555 3 46889999999999999864 6778888888887
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 389 EE-----RVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 389 ~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
.| ++++|++.|++.. .| +......+...|.. ..+.++|..+|++... . -+...+..|..+|
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---~---g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---N---GQNSADFAIAQLF 364 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---T---TCTTHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---h---ChHHHHHHHHHHH
Confidence 55 9999999999887 33 55566666666665 3489999999995444 2 2455667777777
Q ss_pred HH----cCChhHHHHHHHHHHHCC
Q 008097 460 CE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 460 ~~----~g~~~~A~~~~~~m~~~~ 479 (577)
.. ..++++|...++...+.|
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCC
Confidence 64 458889999999988766
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-12 Score=122.31 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=185.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc--ccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI--SPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~ 313 (577)
...+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...++..... ...++. ..|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHH
Confidence 3455667778888999999999999988763 334557888888999999999999999988874 222222 23788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
+...+...|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+. .+.+...|..+...+...+++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999887664 456778888899999999999999998875 334567777777344445699
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCCC------cccHHHHHHHHHHc
Q 008097 393 REASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLPG------SGHYSPLIKALCEK 462 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p~------~~~~~~li~~~~~~ 462 (577)
++|++.|+++.+. .|+ ...+..+...+...|+ .++|...+++.+. ...-.|+ ...|..+...|.+.
T Consensus 159 ~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 159 VKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE--VCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH--HHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH--HHhcccccchHHHHHHHHHHHHHHHHc
Confidence 9999999999874 354 6677778888888888 7888888885555 1112243 25788899999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 008097 463 GGFQSASMLLVQMVGKGILPD-YLTWNSLL 491 (577)
Q Consensus 463 g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 491 (577)
|++++|.+.+++..+ +.|+ ...+..+-
T Consensus 235 ~~~~~A~~~~~~al~--~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 235 RDKVKADAAWKNILA--LDPTNKKAIDGLK 262 (272)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh--cCccHHHHHHHhh
Confidence 999999999999985 4565 44444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=119.96 Aligned_cols=244 Identities=12% Similarity=0.027 Sum_probs=185.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
.+......+...|++++|...+ ++..+... .+...|..+...|...|++++|+..|++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~-------------------~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVF-------------------NKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHH-------------------HHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHH-------------------HHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445556666677777666664 44444322 255689999999999999999999999998
Q ss_pred HCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 264 IDGISWN--FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 264 ~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
+.+..|+ ..+|..+...|...|++++|...|+...+..+. +..+|..+...|...|++++|...|++..+..|+.
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT---RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 8432222 334888999999999999999999999987433 66789999999999999999999999999887765
Q ss_pred e-ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------
Q 008097 342 V-DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER---VREASELMKEMTGHG-YLPI------ 410 (577)
Q Consensus 342 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------ 410 (577)
. .+..+...+...+++++|...|+++.+.. +.+...|..+...+...|+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 4 44555524445569999999999999862 3347788888899998888 888999999887531 1233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 411 ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 411 ~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
...+..+...|...|++++|..+|++.+. +.| +...+..+.
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILA-----LDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCccHHHHHHHhh
Confidence 24677888899999999999999997666 567 444444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=119.48 Aligned_cols=194 Identities=11% Similarity=-0.063 Sum_probs=111.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhh
Q 008097 275 DTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCV 353 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 353 (577)
..+...+...|++++|.+.|+.+....+ .+...+..+...+...|++++|.+.++++.+..|+ ...+..+...|..
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 3333344444444444444444433311 12333444444444444444444444444443332 2333444455555
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 354 DGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
.|++++|...|+++...+..| +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666666655421223 45567777777777888888888887777642 2245667777777788888888888
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++++.+. ..| +...+..+...+.+.|++++|.+.++++.+
T Consensus 197 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 197 YYDLFAQ-----GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHT-----TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8874333 233 556677777778888888888888888774
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-12 Score=121.41 Aligned_cols=247 Identities=13% Similarity=-0.048 Sum_probs=173.4
Q ss_pred hcCChHHHHHHHHHHHhCCCC---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC
Q 008097 159 KEENLVNALVLLEKSFSFGFV---PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN 235 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 235 (577)
..|++++|+..|+++.+.... .+..++..+...+...|++++|...++.+.+ .. +.+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------------------~~-~~~ 76 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA-------------------IR-PDM 76 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HC-CCC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------------------cC-CCc
Confidence 456778888888888765321 1355677777777777777777777554332 21 125
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|..+...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...|+.+.+..+ +.......+
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~~ 151 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP----NDPFRSLWL 151 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----CChHHHHHH
Confidence 6778888888888888888888888888753 33567788888888888899999888888887522 333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCH
Q 008097 316 YGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV---PNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~~ 392 (577)
..+...|++++|...+.+.....|+......++..+...++.++|...+.+....... .+..+|..+...|...|++
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 152 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 5556678889999888887776555555555777777888888888888887653111 1257888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLV 434 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (577)
++|...|++..+. .|+. +.....++...|++++|+..+
T Consensus 232 ~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999874 4632 222344666778888877665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-12 Score=116.35 Aligned_cols=198 Identities=14% Similarity=-0.029 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVL 315 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 315 (577)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS---RNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHH
Confidence 4567778888889999999999999888763 44677888888889999999999999998887632 2567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhh--cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 316 YGLYRENQQDEALEYLKQMEK--LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
..+...|++++|.++++++.+ ..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 889999999999999999887 5553 3456677788889999999999999988863 34578888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++|...++++.+.. +.+...+..+...+...|+.++|.+++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999988743 34566788888888999999999999994444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-11 Score=113.71 Aligned_cols=224 Identities=10% Similarity=-0.078 Sum_probs=188.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCccc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+. + +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--C---CHHH
Confidence 5667778888899999999999999998873 355778888888888 99999999999998876 3 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 311 YNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 311 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
+..+...|.. .+++++|+..|++..+.. +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 8888889998 999999999999988763 56667778888888 999999999999999864 66788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHH
Q 008097 383 IHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSP 454 (577)
Q Consensus 383 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~ 454 (577)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|++.+. ..| ...+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~~~-~~a~~~ 223 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----LEN-GGGCFN 223 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-----TTC-HHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-----CCC-HHHHHH
Confidence 888888 899999999999998864 45677788888888 9999999999996555 223 667888
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHCC
Q 008097 455 LIKALCE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 455 li~~~~~----~g~~~~A~~~~~~m~~~~ 479 (577)
+..+|.. .|++++|.+.+++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8899998 999999999999998654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-10 Score=116.29 Aligned_cols=449 Identities=9% Similarity=-0.004 Sum_probs=291.4
Q ss_pred hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCC---HhHHHH
Q 008097 27 INDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNR---VGDGFK 102 (577)
Q Consensus 27 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~ 102 (577)
..+.+..|+.....++ .|...|..++..+.+. .++.++.+|+ .+... .+.....|...+..-.+.++ ++.+.+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyE-raL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFD-KLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4455666677666554 5899999999998887 9999999999 55443 34456678888888888888 999999
Q ss_pred HHHHHHhCCC-CCCcchHHHHHHHHHhcCCH--------hHHHHHHHhcc------CC-CceeHHHHHHHHH--------
Q 008097 103 LLHVMKSRGV-KPNSVIYNTLIHSLCKNGKV--------GRARSLMSDME------EP-NDVTFSILICAYC-------- 158 (577)
Q Consensus 103 ~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~-------- 158 (577)
+|++.+.... +|++..|...+....+.++. +...++|+... .+ +...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988641 37888888888766665553 33457777643 22 2346777776543
Q ss_pred -hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH--cCCC--
Q 008097 159 -KEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMER--KGCL-- 233 (577)
Q Consensus 159 -~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~--~~~~-- 233 (577)
.+++.+.+..+|++.+......-..+|.....--...+ ...+..++.+. ...++.|+..+.++.. .++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----SAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----HHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----hHHHHHHHHHHHHHHHHHHhHhhc
Confidence 23457788899999885322212233332222111111 11233333221 1233444555544322 1111
Q ss_pred -------------C--C------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 234 -------------P--N------VDTYNILISSYCETG-------VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 234 -------------p--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
| + ...|...+.---..+ ..+.+..+|++.... .+-+...|...+..+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 0 123444444322222 123456678887765 3457788888888888889
Q ss_pred ChHHHH-HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----------CC------------c
Q 008097 286 RIDDGL-KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-----------PR------------A 341 (577)
Q Consensus 286 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------p~------------~ 341 (577)
+.++|. .+|+..... .+.+...|...+....+.|++++|.++|+++.+.. |. .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999996 999998875 33355667788888889999999999999987631 42 1
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE-ERVREASELMKEMTGHGYLPIASTFNTVLSG 420 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 420 (577)
..|...+....+.|.++.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+...+. .+-+...+...+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 246666666677899999999999998751111233343333333344 4589999999998874 33355567778887
Q ss_pred HHhcCCHHHHHHHHHHhhcccCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008097 421 LCRQGNVGTALKLVEEDMRGIGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQ 496 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 496 (577)
....|+.+.|..+|++.+. ..| ....|...++.-.+.|+.+.+.++.+++.+. .|+......++.-|..
T Consensus 514 e~~~~~~~~AR~lferal~-----~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSID-----KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTT-----TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHhCCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 8888999999999996555 223 3467888888899999999999999999864 4554455555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-12 Score=114.97 Aligned_cols=196 Identities=12% Similarity=0.012 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGF 351 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 351 (577)
.+..+...+...|++++|.+.++.+....+ .+...+..+...+...|++++|.+.++++.+..|+ ...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDP---KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 333344444444444444444444443311 12333444444444444444444444444443332 23334444455
Q ss_pred hhc-CCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008097 352 CVD-GNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 352 ~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 429 (577)
... |++++|...|+++.+.+..| +...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 55555666665555421122 24566666777777777777777777776532 2235566666777777777777
Q ss_pred HHHHHHHhhcccCCCCC--CCcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 430 ALKLVEEDMRGIGRGSL--PGSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
|..++++.+. .. .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQS-----RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHH-----HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777774443 22 2455566666666777777777777777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-12 Score=125.39 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=199.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGR-IDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
...|+.+...+...|++++|+..|++.+... +-+...|..+...+...|+ +++|+..|+++...++. +...|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHH
Confidence 4567778888899999999999999998763 3467888999999999997 99999999999987443 67889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ-EERV 392 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~ 392 (577)
..++...|++++|+..|+++.+..|+ ...|..+...+.+.|++++|+..|+++++.. +.+...|+.+..+|.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999998775 4678888889999999999999999999863 3468899999999999 6665
Q ss_pred HHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcC
Q 008097 393 REA-----SELMKEMTGHGYLP-IASTFNTVLSGLCRQG--NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKG 463 (577)
Q Consensus 393 ~~A-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g 463 (577)
++| ++.|++.+. +.| +...|..+...+...| +.++|...+. .+. ..| +...+..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~-~~~-----~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLL-DLQ-----PSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH-HHT-----TTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHH-Hhc-----cCCCCHHHHHHHHHHHHHHh
Confidence 777 588998887 346 4567888888888888 6899999888 443 345 6678889999999875
Q ss_pred ---------ChhHHHHHHHHH-HHCCCCCCH-HHHHHHHHHHH
Q 008097 464 ---------GFQSASMLLVQM-VGKGILPDY-LTWNSLLICLS 495 (577)
Q Consensus 464 ---------~~~~A~~~~~~m-~~~~~~p~~-~~~~~ll~~~~ 495 (577)
.+++|.++++++ .+ +.|.. ..|..+...+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 358999999998 53 55653 55766665553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.9e-12 Score=125.62 Aligned_cols=374 Identities=10% Similarity=-0.000 Sum_probs=234.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CH---HHHHHHHHHHHhhcCCCCCHhhHHHHHHH
Q 008097 15 ITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DI---DLARAFYRKKMMASGVQGDDYTYAILMKG 90 (577)
Q Consensus 15 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~---~~a~~~~~~~m~~~~~~~~~~~~~~ll~~ 90 (577)
..+...+.+.|++++|++.|+...+.|. ...+..+-..|... +. ++|+..|+ ...+. ++..+..+...
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~-~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYR-AAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHH-HHHhC----CHHHHHHHHHH
Confidence 3467778899999999999999987653 22333333344333 44 89999998 44332 55566666665
Q ss_pred HHhcC-----CHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHH---HHHHHhccC-CCceeHHHHHHHHHhcC
Q 008097 91 LCLTN-----RVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRA---RSLMSDMEE-PNDVTFSILICAYCKEE 161 (577)
Q Consensus 91 ~~~~~-----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~~~~-~~~~~~~~li~~~~~~~ 161 (577)
+...+ ++++|...|++..+.|. ...+..|..+|...+..+++ .+.+....+ .+...+..+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 55544 78899999999999763 34778888888877665443 444444332 46778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhh
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG---RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDT 238 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 238 (577)
.++++........+.-...++..+..+...|...| +.++|.+. |+...+.|. ++...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~-------------------~~~aa~~g~-~~a~~ 215 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQ-------------------MEAGVSRGT-VTAQR 215 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHH-------------------HHHHHHTTC-SCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHH-------------------HHHHHHCCC-HHHHH
Confidence 66655554333322222334447778888888777 55555555 455555543 24454
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-H--HcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 239 YNILISSYCET----GVLDSALDVFNDMKIDGISWNFVTYDTLIRG-L--CSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 239 ~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+..+...|... +++++|+..|++.. . -+...+..+... | ...+++++|.+.|++..+. + +...+
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g---~~~A~ 286 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--D---QPRAE 286 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--T---CHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--C---CHHHH
Confidence 46666777554 78999999999987 3 355666666666 4 4678999999999998876 4 66677
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008097 312 NSVLYGLYREN-----QQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGVPNVVIYDCL 382 (577)
Q Consensus 312 ~~li~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 382 (577)
..+...|. .| ++++|...|++.. ..+......+...|.. ..+.++|...|++..+.| +......+
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHH
Confidence 77887777 55 8999999998887 4445555666666655 348888999998888764 34556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 383 IHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 383 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
...|.. ..+..+|...|+...+.|. |+.......+......++..+|..+.+
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~ 416 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQ 416 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666664 4578888888888887762 333322222222223344556666665
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.1e-13 Score=120.27 Aligned_cols=199 Identities=12% Similarity=0.032 Sum_probs=103.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS---SAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---cchHHHHHH
Confidence 44556666667777777777777777776542 33566666677777777777777777777666522 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE 394 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (577)
...+...|++++|...++++.+..| .+...|..+...|...|++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGM----------------------------------ENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTC----------------------------------CSHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHHhccHHH
Confidence 5566656666655555555544333 234455555555556666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHH
Q 008097 395 ASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLV 473 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 473 (577)
|++.++++.+.. +.+...+..+...+...|++++|...|++.+. ..| +...+..+..+|...|++++|.+.++
T Consensus 144 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 144 ALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE-----QDPGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666666555431 22344555555566666666666666653333 122 34555666666666666666666666
Q ss_pred HHHH
Q 008097 474 QMVG 477 (577)
Q Consensus 474 ~m~~ 477 (577)
++.+
T Consensus 218 ~~~~ 221 (243)
T 2q7f_A 218 KAID 221 (243)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-12 Score=118.23 Aligned_cols=189 Identities=11% Similarity=0.011 Sum_probs=134.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHA 385 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 385 (577)
....|..+...+...|++++|...|+++.+..|+ ...+..+...|.+.|++++|...|+++.+.. +.+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444555566666666666666666666665443 3445556666777777788888888777652 3467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 386 YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
|...|++++|++.++++.+.. +.+...+..+...+...|++++|..++++.+. ..| +...+..+...+.+.|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-----LNENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCccHHHHHHHHHHHHHcCC
Confidence 999999999999999998753 34677888899999999999999999996555 344 67889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 465 FQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 465 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
+++|.+.++++.+. ...+..+|..+..++...|+.+.+
T Consensus 175 ~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 175 LDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999864 234577899999999999887644
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=111.05 Aligned_cols=199 Identities=12% Similarity=0.020 Sum_probs=164.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.++.+....+ .+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP---DSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CChHHHHHH
Confidence 45678888889999999999999999988763 44677888899999999999999999999887632 256778889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhh--cCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEK--LFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
...+... |++++|...++++.+ ..|+ ...+..+...|...|++++|...|+++.+.. +.+...|..+...|...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 9999999 999999999999988 3333 3556777888999999999999999998863 345788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
++++|.+.++++.+..-..+...+..+...+...|+.+++..+++ .+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~ 209 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA-QLQ 209 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHH
Confidence 999999999999874311456677777778899999999999998 543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=108.88 Aligned_cols=221 Identities=11% Similarity=-0.050 Sum_probs=117.9
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHHhhhcCChhHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCS----VGRVMDAVEILEESGEQGRLGKVKGGCRF 223 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~g~~~~a~~~ 223 (577)
.++..+...|...|++++|+..|++..+. .+...+..+...+.. .+++++|...++.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~---------------- 67 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK---------------- 67 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH----------------
Confidence 34445555555556666666666655542 233444455555555 5555555444332
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHH
Q 008097 224 LKEMERKGCLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQ 295 (577)
Q Consensus 224 ~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~ 295 (577)
..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 68 ---a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 68 ---ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ---HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ---HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 22221 44555555555665 666666666666666543 45555556666666 666666666666
Q ss_pred HHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHH
Q 008097 296 LMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQM 367 (577)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 367 (577)
+..+. + +...+..+...|.. .+++++|...|++..+.. +...+..+...|.. .+++++|...|++.
T Consensus 139 ~a~~~--~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 139 KACDL--N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHHT--T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHhc--C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 66554 2 33445555555555 555555555555554432 22333444444555 55555666666555
Q ss_pred HHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 008097 368 IEEGGVPNVVIYDCLIHAYCQ----EERVREASELMKEMTGH 405 (577)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 405 (577)
.+.+ +...+..+...|.. .+++++|++.|++..+.
T Consensus 213 ~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 213 CELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 5532 24455555555555 56666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-11 Score=118.28 Aligned_cols=230 Identities=12% Similarity=0.079 Sum_probs=155.0
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGR-VMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
..|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a------------------ 158 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAI------------------ 158 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHH------------------
Confidence 456777777778888888888888877653 2246677777777777775 77777665443
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG 306 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 306 (577)
...... +...|+.+...+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+.++.
T Consensus 159 -l~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~--- 232 (382)
T 2h6f_A 159 -IEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--- 232 (382)
T ss_dssp -HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---
T ss_pred -HHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---
Confidence 332222 56778888888888888888888888887763 346777888888888888888888888888876433
Q ss_pred CcccHHHHHHHHHh-cCCHHHH-----HHHHHHHhhcCCCc-eehHHHHHHhhhcC--CHHHHHHHHHHHHHcCCCCCHh
Q 008097 307 RISPYNSVLYGLYR-ENQQDEA-----LEYLKQMEKLFPRA-VDRSLKILGFCVDG--NVEDAKRCFDQMIEEGGVPNVV 377 (577)
Q Consensus 307 ~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~p~~-~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~ 377 (577)
+...|+.+..++.+ .|..++| +..+++.....|+. ..|..+...+.+.| ++++|...+.++ +. .+.+..
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~ 310 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPY 310 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHH
Confidence 66777777777777 5554665 46677766665543 34555555566655 466676666666 22 233456
Q ss_pred hHHHHHHHHHhcC---------CHHHHHHHHHHH-Hh
Q 008097 378 IYDCLIHAYCQEE---------RVREASELMKEM-TG 404 (577)
Q Consensus 378 ~~~~li~~~~~~g---------~~~~A~~~~~~m-~~ 404 (577)
.+..+...|.+.| ..++|+++++++ .+
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 6666677776653 246677777776 44
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-09 Score=110.59 Aligned_cols=441 Identities=10% Similarity=0.016 Sum_probs=286.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C---HHHHHHHHHHHHhhcCCCCCHhh
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-D---IDLARAFYRKKMMASGVQGDDYT 83 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~---~~~a~~~~~~~m~~~~~~~~~~~ 83 (577)
|-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+. + ++.+..+|++.+......|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 568889999999999999999999999999875 345788899988887777 7 99999999954443322478888
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHh-CCC-CCC-cchHHHHHHHHHh---------cCCHhHHHHHHHhcc
Q 008097 84 YAILMKGLCLTNRV--------GDGFKLLHVMKS-RGV-KPN-SVIYNTLIHSLCK---------NGKVGRARSLMSDME 143 (577)
Q Consensus 84 ~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 143 (577)
|...+....+.++. +...++|+..+. .|. .++ ...|...+..... .++++.++++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88888776665553 334577777654 365 454 4678888876543 345788999999987
Q ss_pred C-CCc---eeHHH---HHHHHH----------hcCChHHHHHHHHHHHhC--CCC---CCH-hhHHHHHHHHHhcC-CHh
Q 008097 144 E-PND---VTFSI---LICAYC----------KEENLVNALVLLEKSFSF--GFV---PDV-VTITKVLELLCSVG-RVM 199 (577)
Q Consensus 144 ~-~~~---~~~~~---li~~~~----------~~~~~~~A~~~~~~m~~~--g~~---~~~-~~~~~ll~~~~~~g-~~~ 199 (577)
. |.. ..|.. +...+. ....++.|...+.++... ++. |.. .+.. ....-..+ ...
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~ 299 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDV 299 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHH
Confidence 5 211 22322 111110 001222333344332211 111 000 0000 00000000 011
Q ss_pred HHHHHHHHHHHhhhcCC--------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCcC
Q 008097 200 DAVEILEESGEQGRLGK--------VKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSAL-DVFNDMKIDGISWN 270 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~--------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~ 270 (577)
....++...+...+... .+....+|++....- +-+...|-..+.-+...|+.++|. .+|++.... .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 22333333333322211 123445677776642 236778888888888899999997 999998864 3556
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-------CCCCC------------cccHHHHHHHHHhcCCHHHHHHHH
Q 008097 271 FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE-------GSKGR------------ISPYNSVLYGLYRENQQDEALEYL 331 (577)
Q Consensus 271 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 331 (577)
...|...+...-+.|+++.|.++|+.+...-+ ...|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66677888888999999999999998876310 00121 235888888888899999999999
Q ss_pred HHHhhc-CC-CceehHHHHHHhhhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 332 KQMEKL-FP-RAVDRSLKILGFCVD-GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 332 ~~~~~~-~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.++.+. .+ ....|...+..-.++ ++.+.|..+|+...+. .+.+...|...+......|+.+.|..+|++.+.....
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 999876 22 222333333333344 4599999999999987 4556778889999888999999999999999975422
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHH
Q 008097 409 P--IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKAL 459 (577)
Q Consensus 409 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~ 459 (577)
| ....|...+.--...|+.+.+.++.++... ..|+......+++-|
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~-----~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE-----KFPEVNKLEEFTNKY 584 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-----HSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCcHHHHHHHHh
Confidence 2 234688888777899999999999995444 456655555555544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-12 Score=127.57 Aligned_cols=241 Identities=12% Similarity=-0.007 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC---CCCCc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKID----GI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG---SKGRI 308 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~ 308 (577)
..|..+...|...|++++|...|++.... +. +....++..+...|...|++++|...+++....... .+...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 46788888899999999999999887653 11 224466778888899999999999999887653111 11123
Q ss_pred ccHHHHHHHHHhcCC-----------------HHHHHHHHHHHhhcC---CC----ceehHHHHHHhhhcCCHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQ-----------------QDEALEYLKQMEKLF---PR----AVDRSLKILGFCVDGNVEDAKRCF 364 (577)
Q Consensus 309 ~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~ 364 (577)
.++..+...|...|+ +++|...+.+..+.. ++ ...+..+...|...|++++|...|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 467778888888899 888888888765521 11 224556667788888888888888
Q ss_pred HHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008097 365 DQMIEEGGV-PN----VVIYDCLIHAYCQEERVREASELMKEMTGHG----YL-PIASTFNTVLSGLCRQGNVGTALKLV 434 (577)
Q Consensus 365 ~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 434 (577)
++..+.... ++ ..++..+...|...|++++|++.+++..+.. .. ....++..+...+...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887664100 11 2267777888888888888888888776421 00 01346677777888888888888888
Q ss_pred HHhhcccC-CCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 435 EEDMRGIG-RGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 435 ~~~m~~~~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
++.+.... .+..+ ....|..+..+|.+.|++++|.+.+++..+
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 75444100 00011 234677778888888888888888888763
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-12 Score=127.38 Aligned_cols=271 Identities=10% Similarity=-0.000 Sum_probs=153.4
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFL 224 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~ 224 (577)
.+......+...|++++|+..|++....... + ...+..+...+...|++++|...++.+... .
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~ 77 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------A 77 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------H
Confidence 4455566777788888888888887765322 2 246777778888888888888887665432 1
Q ss_pred HHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CC-cCHHHHHHHHHHHHcCCC------------
Q 008097 225 KEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKIDG----IS-WNFVTYDTLIRGLCSGGR------------ 286 (577)
Q Consensus 225 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~-~~~~~~~~ll~~~~~~g~------------ 286 (577)
.. .+..| ...++..+...|...|++++|...+++..+.. .+ ....++..+...|...|+
T Consensus 78 ~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 154 (406)
T 3sf4_A 78 RT---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154 (406)
T ss_dssp HH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CC
T ss_pred Hh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhh
Confidence 11 11111 24567778888899999999999988876531 01 113467777788888888
Q ss_pred --------hHHHHHHHHHHHhccCCC---CCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---C----ceehHHHH
Q 008097 287 --------IDDGLKILQLMEDSKEGS---KGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP---R----AVDRSLKI 348 (577)
Q Consensus 287 --------~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~ 348 (577)
+++|...+.......... +....++..+...+...|++++|...+++..+..| + ...+..+.
T Consensus 155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 234 (406)
T 3sf4_A 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 234 (406)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 888887777654321010 00123456666667777777777777766654311 1 11334444
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGV-PN----VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVL 418 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll 418 (577)
..|...|++++|...|++....... ++ ..++..+...|...|++++|.+.+++..+. +-.+. ..++..+.
T Consensus 235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 314 (406)
T 3sf4_A 235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG 314 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4555555555555555554432000 01 234445555555555555555555554421 10010 22344444
Q ss_pred HHHHhcCCHHHHHHHHH
Q 008097 419 SGLCRQGNVGTALKLVE 435 (577)
Q Consensus 419 ~~~~~~g~~~~a~~~~~ 435 (577)
..|...|++++|..+++
T Consensus 315 ~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 45555555555555555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=127.89 Aligned_cols=212 Identities=9% Similarity=-0.065 Sum_probs=173.3
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRI-DDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEY 330 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (577)
+++++..+++..... +.+...+..+...|...|++ ++|.+.|++..+.++. +...|..+...|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566677777665442 34677888888888899999 9999999988876433 567888888999999999999999
Q ss_pred HHHHhhcCCCceehHHHHHHhhhc---------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--------CCHH
Q 008097 331 LKQMEKLFPRAVDRSLKILGFCVD---------GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE--------ERVR 393 (577)
Q Consensus 331 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 393 (577)
|++..+..|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 160 ~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999998888876777778888888 99999999999998863 34678899999999988 9999
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHH
Q 008097 394 EASELMKEMTGHGYLP----IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 468 (577)
+|++.|++..+. .| +...+..+..+|...|++++|...|++.+. +.| +...+..+..++...|++++|
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA-----LDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999874 45 677888999999999999999999996666 456 566788888999999999988
Q ss_pred HHHHHHH
Q 008097 469 SMLLVQM 475 (577)
Q Consensus 469 ~~~~~~m 475 (577)
.+.+.++
T Consensus 312 i~~~~~~ 318 (474)
T 4abn_A 312 LESKGKT 318 (474)
T ss_dssp HHHTTTC
T ss_pred HHHhccc
Confidence 8765544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-12 Score=124.59 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=168.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 008097 153 LICAYCKEENLVNALVLLEKSFSFGFVPDV----VTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEME 228 (577)
Q Consensus 153 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~ 228 (577)
+...+...|++++|+..|+++...... +. ..+..+...+...|++++|...++.+... .....
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------~~~~~ 120 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------AKSMN 120 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HHHTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------HHHcc
Confidence 334455556666666666655554211 11 34555556666666666666665554332 11110
Q ss_pred HcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHcCCC-----------------
Q 008097 229 RKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID----G-ISWNFVTYDTLIRGLCSGGR----------------- 286 (577)
Q Consensus 229 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~ll~~~~~~g~----------------- 286 (577)
........+..+...|...|++++|...|++.... + .+....++..+...|...|+
T Consensus 121 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 121 --DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred --CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 00112345666666777777777777777765542 1 11123456666667777777
Q ss_pred hHHHHHHHHHHHhccC--C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-------ceehHHHHHHhhhcCC
Q 008097 287 IDDGLKILQLMEDSKE--G-SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-------AVDRSLKILGFCVDGN 356 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~ 356 (577)
+++|.+.+.+...... + .......+..+...+...|++++|...+++..+..+. ...+..+...|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 7777777666543210 0 0111235666777778888888888888777664322 1245667777888888
Q ss_pred HHHHHHHHHHHHHcCC--C---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 008097 357 VEDAKRCFDQMIEEGG--V---PNVVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLSGLCRQGN 426 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~ 426 (577)
+++|...|++...... . ....++..+...|...|++++|.+.+++..+. +..+ ...++..+...|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 8888888888766411 0 11467888899999999999999999988742 1111 13467788889999999
Q ss_pred HHHHHHHHHHhhc
Q 008097 427 VGTALKLVEEDMR 439 (577)
Q Consensus 427 ~~~a~~~~~~~m~ 439 (577)
+++|..++++.+.
T Consensus 359 ~~~A~~~~~~al~ 371 (411)
T 4a1s_A 359 HERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999995554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-10 Score=110.32 Aligned_cols=216 Identities=7% Similarity=-0.031 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------cCCCh-------HHHHHHHHHHHh-ccCCCCCCcccHHHHHHH
Q 008097 253 DSALDVFNDMKIDGISWNFVTYDTLIRGLC-------SGGRI-------DDGLKILQLMED-SKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 253 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 317 (577)
++|..+|++..... +.+...|..+...+. +.|++ ++|..+|++... ..+ .+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHHH
Confidence 56666777666542 335556666555554 34665 677777777765 221 244467777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hcCCHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC-QEERVRE 394 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 394 (577)
+.+.|++++|..+|+++.+..|+.. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777777666543 56666666777777777777777777642 223344443333222 2577777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHH
Q 008097 395 ASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 395 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
|.++|++..+. .| +...|..++..+.+.|++++|..+|++.+. ...+.| ....|..++..+.+.|++++|..+
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--SGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777653 23 455677777777777777777777775444 212344 345677777777777777777777
Q ss_pred HHHHHH
Q 008097 472 LVQMVG 477 (577)
Q Consensus 472 ~~~m~~ 477 (577)
++++.+
T Consensus 264 ~~~a~~ 269 (308)
T 2ond_A 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-11 Score=119.19 Aligned_cols=230 Identities=11% Similarity=-0.018 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC----CcccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG----RISPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 312 (577)
....+...|++++|...|++..+. +-++ ...++..+...|...|++++|...+.+..+..+.... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455677899999999999998763 2122 3467888889999999999999999987764222111 124678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCC---Cc----eehHHHHHHhhhcCCHHHHHHHHHHHHHc----CC-CCCHhhHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFP---RA----VDRSLKILGFCVDGNVEDAKRCFDQMIEE----GG-VPNVVIYD 380 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~ 380 (577)
.+...|...|++++|...|.+..+..+ +. ..+..+...|...|++++|...|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999999876422 21 25677888899999999999999998873 23 33466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHG---YLPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|...|++++|.+.+++..+.. -.|. ...+..+...+...|+ .++|..+++ ... ..| ....+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~-~~~-----~~~~~~~~~ 342 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE-SKM-----LYADLEDFA 342 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH-HTT-----CHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HCc-----CHHHHHHHH
Confidence 99999999999999999999887421 0122 2235667778888888 888888888 333 334 45678
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+...|...|++++|.+.+++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=121.54 Aligned_cols=278 Identities=15% Similarity=0.058 Sum_probs=200.9
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHH
Q 008097 180 PDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSA 255 (577)
Q Consensus 180 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 255 (577)
+....+......+...|++++|...++.+++ .... + ...|..+...|...|++++|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-------------------~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A 66 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQ-------------------VGTE-DLKTLSAIYSQLGNAYFYLHDYAKA 66 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------HCCS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-------------------cCcc-cHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3445566666777778888888777655433 2111 2 35678888999999999999
Q ss_pred HHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCC---CCcccHHHHHHHHHhcCC----
Q 008097 256 LDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSK---GRISPYNSVLYGLYRENQ---- 323 (577)
Q Consensus 256 ~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~---- 323 (577)
...|++.... +..| ...++..+...|...|++++|...+.......+... ....++..+...|...|+
T Consensus 67 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 146 (406)
T 3sf4_A 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 146 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccc
Confidence 9999987542 2222 245677888899999999999999988765421111 013367888889999999
Q ss_pred ----------------HHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC-CCC----
Q 008097 324 ----------------QDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG-VPN---- 375 (577)
Q Consensus 324 ----------------~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~---- 375 (577)
+++|...+.+..+. .++ ...+..+...|...|++++|...|++..+... .++
T Consensus 147 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 226 (406)
T 3sf4_A 147 PGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226 (406)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999887653 122 23466677889999999999999999876410 112
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-C
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-G 448 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~ 448 (577)
..+|..+...|...|++++|+..+++..+. +..+. ..++..+...+...|++++|..++++.+... ..+-.+ .
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 306 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGE 306 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 237888999999999999999999988742 11111 4567888899999999999999998555410 001111 2
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
...+..+..+|.+.|++++|.+.+++..+
T Consensus 307 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 307 GRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788899999999999999999998764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-12 Score=119.93 Aligned_cols=273 Identities=15% Similarity=0.029 Sum_probs=194.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhHHHHHHHH
Q 008097 186 TKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPN----VDTYNILISSYCETGVLDSALDVFND 261 (577)
Q Consensus 186 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 261 (577)
......+...|++++|...++. ..+.... + ...+..+...|...|++++|...+++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~-------------------al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEA-------------------AVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-------------------HHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHH-------------------HHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344556666666666666544 4443211 2 35678888999999999999999998
Q ss_pred HHHC----CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC---CcccHHHHHHHHHhcCC----------
Q 008097 262 MKID----GIS-WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG---RISPYNSVLYGLYRENQ---------- 323 (577)
Q Consensus 262 m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~---------- 323 (577)
.... +.. ....++..+...|...|++++|...+.......+.... ...++..+...+...|+
T Consensus 69 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence 7542 212 23556788888999999999999999987654211110 12367788889999999
Q ss_pred ----------HHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHH
Q 008097 324 ----------QDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG-VPN----VVIYDC 381 (577)
Q Consensus 324 ----------~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 381 (577)
+++|...+++.... .++ ...+..+...|...|++++|...|++..+... .++ ..++..
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 228 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999999887653 111 23466677788999999999999998876410 011 337888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccC-CCCCC-CcccHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIG-RGSLP-GSGHYSP 454 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~-~~~~p-~~~~~~~ 454 (577)
+...|...|++++|.+.+++..+. +..+. ..++..+...+...|++++|..++++.+.... .+-.+ ....+..
T Consensus 229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 899999999999999999988642 11111 45677888899999999999999985544100 01111 2457888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC
Q 008097 455 LIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
+...|.+.|++++|.+.+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999998753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-10 Score=109.13 Aligned_cols=215 Identities=10% Similarity=-0.006 Sum_probs=167.3
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 220 GCRFLKEMERKGCLPNVDTYNILISSYCE-------TGVL-------DSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 220 a~~~~~~~~~~~~~p~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
|..+|++..... +-+...|..+...+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 35 a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~ 113 (308)
T 2ond_A 35 VMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 344455555532 2267788888877753 5886 899999999987312335668999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce-ehHHHHHH-hhhcCCHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRIS-PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV-DRSLKILG-FCVDGNVEDAKR 362 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~-~~~~g~~~~A~~ 362 (577)
++++|.++|+++.+..+. +.. .|..++..+.+.|++++|..+|++..+..|... .|...... +...|+.++|..
T Consensus 114 ~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 114 KYEKVHSIYNRLLAIEDI---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp CHHHHHHHHHHHHTSSSS---CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999975322 343 799999999999999999999999999766542 22222222 123699999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 363 CFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG-YLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+|++..+. .+.+...|..++..+.+.|++++|..+|++..... +.|+ ...|..++......|+.++|..++++.+.
T Consensus 191 ~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999886 23468899999999999999999999999999863 4563 56788888888999999999999995555
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-11 Score=117.06 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHH
Q 008097 150 FSILICAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLK 225 (577)
Q Consensus 150 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~ 225 (577)
+......+...|++++|+..|+++...... + ...+..+...+...|++++|.+.++.+... ..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~~ 74 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------AR 74 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------hh
Confidence 334456677788888888888888775322 2 356777788888888888888887765442 22
Q ss_pred HHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHcCCC-------------
Q 008097 226 EMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKIDGI-SWN----FVTYDTLIRGLCSGGR------------- 286 (577)
Q Consensus 226 ~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ll~~~~~~g~------------- 286 (577)
.. +..| ....+..+...|...|++++|...+++..+... .++ ..++..+...|...|+
T Consensus 75 ~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 75 TI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred cc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 11 1111 245677888889999999999999988765310 112 3467778888888899
Q ss_pred -------hHHHHHHHHHHHhccC--C-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---C----ceehHHHHH
Q 008097 287 -------IDDGLKILQLMEDSKE--G-SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFP---R----AVDRSLKIL 349 (577)
Q Consensus 287 -------~~~a~~~~~~~~~~~~--~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~ 349 (577)
+++|.+.++....... + .......+..+...+...|++++|...+++..+..+ + ...+..+..
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 8999888877653210 1 011234577788889999999999999998876422 1 225667778
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGG-VPN----VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLS 419 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~ 419 (577)
.|...|++++|...|++...... .++ ..++..+...|...|++++|...+++..+. +-.+ ...++..+..
T Consensus 232 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 88999999999999998876411 011 557888899999999999999999988742 1111 1346778888
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 008097 420 GLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 420 ~~~~~g~~~~a~~~~~~~m~ 439 (577)
.+...|++++|..++++.+.
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 99999999999999996555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-11 Score=102.27 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=111.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...|...|++++|+..|++..+.. +-+..++..+...|.+.|++++|...+.......+. +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch---hHHHHHHH
Confidence 56677777778888888888888888777653 335667777777778888888888877777665222 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...+...++++.|...+.+..+..|+ ...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 66777777777777777777665554 3345555566666666666666666666642 234556666666666666666
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
+|++.|++.++
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666666665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.9e-11 Score=102.66 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
.|..+...|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|...+...... .+.+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHH
Confidence 34444444444444444444444444433322 22333334444444444444444444443 11233444444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.+++++|.+.+.+..... +-+...+..+...+.+.|++++|+..|++.+. +.| +...|..+..+|.+.|++++
T Consensus 86 ~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS-----IKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH-----hcchhhhHHHHHHHHHHHCCCHHH
Confidence 555555555555554421 11334444555555555555555555553333 233 34455555555555555555
Q ss_pred HHHHHHHHHH
Q 008097 468 ASMLLVQMVG 477 (577)
Q Consensus 468 A~~~~~~m~~ 477 (577)
|.+.+++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=120.83 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=166.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc-----C
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKID-------GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK-----E 302 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~ 302 (577)
+..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...++...... .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888889999999999999999998763 223455678888899999999999999998877541 1
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC-----CC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHc---
Q 008097 303 GSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF-----PR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEE--- 370 (577)
Q Consensus 303 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 370 (577)
..+....++..+...|...|++++|...++++.+.. ++ ...+..+...|...|++++|...|+++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122234568888899999999999999999887641 21 234666778889999999999999998774
Q ss_pred ---CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHH
Q 008097 371 ---GGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGH-------GYLPIAS-------TFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 371 ---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~-------~~~~ll~~~~~~g~~~~a~~ 432 (577)
+..| ...++..+...|...|++++|.+.++++.+. ...|... .+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1123 3457888999999999999999999998752 1122111 12222333344555555556
Q ss_pred HHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 433 LVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+++... ..| ....+..+..+|.+.|++++|.+.+++..+
T Consensus 266 ~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKV-----DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCC-----CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6662221 234 667889999999999999999999998874
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=117.98 Aligned_cols=177 Identities=12% Similarity=0.022 Sum_probs=125.0
Q ss_pred eeHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHH
Q 008097 148 VTFSILICAYCKEENLVNALVLLEKSFSF-------GFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGG 220 (577)
Q Consensus 148 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a 220 (577)
.+|..+...+...|++++|+..|+++... .......++..+...+...|++++|...++.+...
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------- 98 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI--------- 98 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------
Confidence 34566666677777777777777766552 22234567777888888899999998887665432
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CcCHHHHHHHHHHHHcCCChHHHHHH
Q 008097 221 CRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKID------GI-SWNFVTYDTLIRGLCSGGRIDDGLKI 293 (577)
Q Consensus 221 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~a~~~ 293 (577)
+........+....++..+...|...|++++|...|++..+. +. +....++..+...|...|++++|.+.
T Consensus 99 ---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 99 ---REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp ---HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ---HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333322211224567888999999999999999999998764 22 22455678888899999999999999
Q ss_pred HHHHHhcc-----CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 294 LQLMEDSK-----EGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 294 ~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
++.+.... ...+....++..+...|...|++++|...++++.+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99886531 01111234577788888899999999998888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-11 Score=118.07 Aligned_cols=219 Identities=14% Similarity=0.016 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 008097 163 LVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV-MDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNI 241 (577)
Q Consensus 163 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 241 (577)
+++++..+++..... +.+...+..+...+...|++ ++|.+.++.+++ .. +.+...|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-------------------~~-p~~~~a~~~ 142 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-------------------LE-PELVEAWNQ 142 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-------------------HC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-------------------hC-CCCHHHHHH
Confidence 344555555443322 23445555555555555555 555555433322 11 113555666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC---------CChHHHHHHHHHHHhccCCCCCCcccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG---------GRIDDGLKILQLMEDSKEGSKGRISPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 312 (577)
+...|...|++++|...|++..+. .|+...+..+...|... |++++|.+.|++..+..+. +...|.
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 217 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWY 217 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC---CHHHHH
Confidence 666666666666666666666654 34555566666666666 6666666666655554222 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhh----cCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCV----DGNVEDAKRCFDQMIEEGGV--PNVVIYDCLIHAY 386 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~ 386 (577)
.+..+|... |.. .|++++|...|++..+.... .+...|..+..+|
T Consensus 218 ~lg~~~~~~-----------------------------~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~ 268 (474)
T 4abn_A 218 ILGNAYLSL-----------------------------YFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH 268 (474)
T ss_dssp HHHHHHHHH-----------------------------HHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------------------HHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence 444444443 000 04555666666665553110 2566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 387 CQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|++++|++.|++..+. .| +...+..+..++...|++++|...+. .+.
T Consensus 269 ~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~-~~~ 319 (474)
T 4abn_A 269 KYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG-KTK 319 (474)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT-TCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 7778888888877777763 34 34456677777777777777777666 444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-10 Score=110.40 Aligned_cols=236 Identities=8% Similarity=-0.048 Sum_probs=135.5
Q ss_pred HHHHHHhcCCHhHHHHHHHhccC-----CC----ceeHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCCHhhHH
Q 008097 122 LIHSLCKNGKVGRARSLMSDMEE-----PN----DVTFSILICAYCKEENLVNALVLLEKSFSFGF------VPDVVTIT 186 (577)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~~~~~~~~ 186 (577)
....+...|++++|...|++..+ +| ..+|..+...|...|++++|+..+.+....-. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445556666666666666543 11 23456666666677777777776666543210 11134677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008097 187 KVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKID 265 (577)
Q Consensus 187 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 265 (577)
.+...|...|++++|...++.+.+. +... +..+ ...++..+...|...|++++|+..|++..+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~------------~~~~---~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSM------------AEAE---KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH------------HHHc---CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7778888888888888887665432 2211 1001 1246777888888889999999888887762
Q ss_pred ----CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC--CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 008097 266 ----GI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEG--SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 266 ----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 338 (577)
+. +....++..+...|.+.|++++|...+++....... .+.....+..+...+...|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------ 321 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA------------ 321 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH------------
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH------------
Confidence 22 334566777788888888888888888776543100 00001112233333333333100
Q ss_pred CCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 339 PRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 339 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
+++|..++++... .+.....+..+...|...|++++|.+.|++..+
T Consensus 322 ------------------~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 322 ------------------IQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ------------------HHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444444444411 111233556667777777777777777777653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-09 Score=101.56 Aligned_cols=270 Identities=10% Similarity=0.033 Sum_probs=166.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 008097 155 CAYCKEENLVNALVLLEKSFSFGFVPDVV----TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERK 230 (577)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 230 (577)
..+...|++++|...+++........+.. ++..+...+...|++++|...++..... . ...
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~---~~~ 86 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM------------A---RQH 86 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------H---HHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH------------H---Hhc
Confidence 44556777777777777766543222222 3455556677778888887776654432 1 111
Q ss_pred CCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 231 GCL-PNVDTYNILISSYCETGVLDSALDVFNDMKID----GIS--W-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 231 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
+.. ....++..+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...++......+
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 100 01223556677788889999998888887642 221 2 234556677788888999999998888776532
Q ss_pred CCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCc-eehHH-----HHHHhhhcCCHHHHHHHHHHHHHcCC
Q 008097 303 GSKG--RISPYNSVLYGLYRENQQDEALEYLKQMEKLF--PRA-VDRSL-----KILGFCVDGNVEDAKRCFDQMIEEGG 372 (577)
Q Consensus 303 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~ 372 (577)
...+ ....+..+...+...|++++|...+++..... ++. ..+.. .+..+...|++++|...+++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 2211 12346667777888888888888888876531 111 11221 22336678888888888887765322
Q ss_pred CCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 373 VPN---VVIYDCLIHAYCQEERVREASELMKEMTG----HGYLPIAS-TFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 373 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.++ ...+..+...+...|++++|...+++... .|..++.. .+..+..++...|+.++|...+++.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111 22456677778888888888888887653 22222222 455566677788888888888874443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-10 Score=108.20 Aligned_cols=231 Identities=10% Similarity=-0.027 Sum_probs=170.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC----CcccH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGI-SW----NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG----RISPY 311 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 311 (577)
.....+...|++++|+..|++..+.-. .+ ...++..+...|...|+++.|...+.+.....+.... ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556789999999999999875411 12 2456778888999999999999999887654211111 13457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhc---CCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCHhhHH
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKL---FPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNVVIYD 380 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 380 (577)
+.+...|...|++++|.+.|.+..+. .++ ...+..+...|...|++++|...|++.... +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78889999999999999999988763 122 234566778889999999999999998872 2233367788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGY---LPI-ASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|.+.|++++|...+++..+..- .|. ...+..+...+...|+ +.+|..+++ ... ..| ....+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~-~~~-----~~~~~~~~~ 339 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE-KKN-----LHAYIEACA 339 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-HTT-----CHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-hCC-----ChhHHHHHH
Confidence 899999999999999999999875311 232 3345556666677788 888888888 322 233 44567
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+...|...|++++|.+.+++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998863
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-09 Score=103.07 Aligned_cols=205 Identities=16% Similarity=0.069 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCC--C-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCL--P-NVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
++..+...+...|++++|...++.+... ....+.. | ....+..+...+...|++++|...++
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~---------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQL---------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3455667777888888888887665332 2222221 2 23456667788899999999999999
Q ss_pred HHHHCCCC----cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH-----HHHHHHhcCCHHHHHHHH
Q 008097 261 DMKIDGIS----WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS-----VLYGLYRENQQDEALEYL 331 (577)
Q Consensus 261 ~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~ 331 (577)
+....... ....++..+...+...|++++|...++.......... ....+.. .+..+...|++++|...+
T Consensus 160 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 238 (373)
T 1hz4_A 160 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK-YHSDWISNANKVRVIYWQMTGDKAAAANWL 238 (373)
T ss_dssp HHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC-cchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88754211 1235677788889999999999999998875421111 1112222 234477899999999999
Q ss_pred HHHhhcCCCce-----ehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 332 KQMEKLFPRAV-----DRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPNV-VIYDCLIHAYCQEERVREASELMKE 401 (577)
Q Consensus 332 ~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~ 401 (577)
++.....|... .+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+++
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99877544321 2455667888999999999999988654 222223 2666778889999999999999998
Q ss_pred HHh
Q 008097 402 MTG 404 (577)
Q Consensus 402 m~~ 404 (577)
...
T Consensus 319 al~ 321 (373)
T 1hz4_A 319 ALK 321 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-09 Score=94.46 Aligned_cols=160 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
+..+...+...|++++|...++++.+..|+ ...+..+...|...|++++|...|+++.+. .+.+...|..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Confidence 444455555556666666666555554432 233445555666666666666666666654 233566777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHH
Q 008097 390 ERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 390 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 468 (577)
|++++|.+.++++.+.. +.+...+..+...+...|++++|..++++.+. ..| +...+..+...+...|++++|
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALG-----LRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-----cCccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888887777542 33566677777777788888888888875444 233 566777777888888888888
Q ss_pred HHHHHHHHH
Q 008097 469 SMLLVQMVG 477 (577)
Q Consensus 469 ~~~~~~m~~ 477 (577)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-10 Score=117.57 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
..++.+...|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|+..|++.++.. +-+...|+.+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345555555555555555555555555554442 344555555666666666666666666542 124566777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCCh
Q 008097 388 QEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGF 465 (577)
Q Consensus 388 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~ 465 (577)
..|++++|++.|++.++. .| +...+..+..++...|++++|+..|++.+. +.| +...|..+..+|...|++
T Consensus 89 ~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-----l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK-----LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCChHHHhhhhhHHHhcccH
Confidence 777777777777777663 35 345677777777777777777777775555 456 456677777777777777
Q ss_pred hHHHHHHHHHH
Q 008097 466 QSASMLLVQMV 476 (577)
Q Consensus 466 ~~A~~~~~~m~ 476 (577)
++|.+.+++..
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-09 Score=96.61 Aligned_cols=203 Identities=9% Similarity=0.010 Sum_probs=150.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|+.....++. +...|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHH
Confidence 567788888889999999999999999887754367778888888999999999999999998876333 56678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCce--------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAV--------DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLI 383 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li 383 (577)
...+...|++++|...+++..+..|+.. .+..+...+...|++++|...|++..+. .|+ ...|..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999988877643 3556667788899999999999999874 454 56777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC-cccHHHH
Q 008097 384 HAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG-SGHYSPL 455 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~-~~~~~~l 455 (577)
..|...| ...++++...+ ..+...+.... ....+.+++|..+|++.+. +.|+ ......+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~-----l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT-----LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh-----cCCCCHHHHHHH
Confidence 7776544 34455555432 22334444333 3345668999999996666 5674 3444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-09 Score=103.30 Aligned_cols=163 Identities=11% Similarity=-0.002 Sum_probs=106.4
Q ss_pred HHHHHhcCCHhHHHHHHHhccC-----CC----ceeHHHHHHHHHhcCChHHHHHHHHHHHhCC----C-CC-CHhhHHH
Q 008097 123 IHSLCKNGKVGRARSLMSDMEE-----PN----DVTFSILICAYCKEENLVNALVLLEKSFSFG----F-VP-DVVTITK 187 (577)
Q Consensus 123 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g----~-~~-~~~~~~~ 187 (577)
...+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..... . .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3345566667776666666543 22 2345666667777777777777776654321 0 11 2456777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-
Q 008097 188 VLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYCETGVLDSALDVFNDMKID- 265 (577)
Q Consensus 188 ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 265 (577)
+...|...|++++|.+.+..+++. +.. .+..+ ...+++.+...|...|++++|...|++....
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~------------~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALEL------------AMD---IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------HHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH------------HHH---cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888888888888887665442 211 11111 2346777888888899999999999887761
Q ss_pred ---CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 266 ---GISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 266 ---g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+.+....++..+...|.+.|++++|...+++....
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22333566777888888888888888888887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=92.37 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=89.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+....+ .+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~ 85 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP---DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Confidence 45555666667777777777777665442 33555666666666677777777777766665421 234445555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 318 LYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
+...|++++|.+.++++.+..| .+...|..+...|...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP----------------------------------INFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT----------------------------------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc----------------------------------HhHHHHHHHHHHHHHcCcHHHHHH
Confidence 5555555555555555544332 234445555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.++++.+.. +.+...+..+...+...|++++|..+++
T Consensus 132 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 132 SFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555432 2234445555555555555555555555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-09 Score=100.30 Aligned_cols=206 Identities=11% Similarity=0.022 Sum_probs=134.2
Q ss_pred ChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC--CCCC-CcccHHHHHHHHHhcCCHHHH
Q 008097 251 VLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE--GSKG-RISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 251 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-~~~~~~~li~~~~~~g~~~~A 327 (577)
++++|...|.+. ...|...|++++|...|.+...... +.++ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 2345667777777777776654311 1111 134567777777777888888
Q ss_pred HHHHHHHhhcCCC-------ceehHHHHHHhhhc-CCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHH
Q 008097 328 LEYLKQMEKLFPR-------AVDRSLKILGFCVD-GNVEDAKRCFDQMIEEGGV-PN----VVIYDCLIHAYCQEERVRE 394 (577)
Q Consensus 328 ~~~~~~~~~~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 394 (577)
+..+++..+..|. ...+..+...|... |++++|...|++..+.... .+ ..+|+.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 8777777664322 23456667778885 8999999888888764110 01 3568888999999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcc------cHHHHHHHHH--
Q 008097 395 ASELMKEMTGHGYLPIA------STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSG------HYSPLIKALC-- 460 (577)
Q Consensus 395 A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~------~~~~li~~~~-- 460 (577)
|+..|++..+....... ..+..+..++...|++++|...|++.+. +.|+.. .+..++..|.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS-----EDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC-----C---------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999874322111 1566777788899999999999995444 444321 2344555554
Q ss_pred HcCChhHHHHHHHHHH
Q 008097 461 EKGGFQSASMLLVQMV 476 (577)
Q Consensus 461 ~~g~~~~A~~~~~~m~ 476 (577)
..+++++|...++++.
T Consensus 252 ~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFM 267 (292)
T ss_dssp CTTTHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHhccCC
Confidence 3466788888777763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-10 Score=102.42 Aligned_cols=144 Identities=10% Similarity=-0.007 Sum_probs=104.1
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008097 181 DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFN 260 (577)
Q Consensus 181 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 260 (577)
...++..+...+...|++++|...++.+... .........+....++..+...|...|++++|...|.
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAI------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------HHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4567888888899999999999887765442 3333111112245678889999999999999999999
Q ss_pred HHHHC------C-CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc-----CCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 261 DMKID------G-ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK-----EGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 261 ~m~~~------g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
+.... . .+....++..+...|...|++++|...+++..... +..+....++..+...|...|++++|.
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98764 1 12345678888889999999999999998876540 111113455777788888888888888
Q ss_pred HHHHHHhh
Q 008097 329 EYLKQMEK 336 (577)
Q Consensus 329 ~~~~~~~~ 336 (577)
..++++.+
T Consensus 190 ~~~~~~l~ 197 (283)
T 3edt_B 190 TLYKEILT 197 (283)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=6.4e-09 Score=97.55 Aligned_cols=191 Identities=12% Similarity=-0.001 Sum_probs=132.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC---CcccHHHH
Q 008097 243 ISSYCETGVLDSALDVFNDMKID----GISWN-FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG---RISPYNSV 314 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l 314 (577)
...|...|++++|...|.+.... |-+++ ..+|..+...|.+.|++++|...+++.....+.... ...+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34566677778777777766542 22222 456777788888888888888888776654211100 02357778
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhcCCC-------ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHh------hHH
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEKLFPR-------AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVV------IYD 380 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~ 380 (577)
...|... |++++|+..|++..+..|+ ...+..+...|.+.|++++|...|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888886 9999999999988875442 2346677888999999999999999999853222211 567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGYLPIAS------TFNTVLSGLC--RQGNVGTALKLVE 435 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~ 435 (577)
.+..++...|++++|+..|++..+ +.|+.. .+..++.+|. ..+++++|+..|+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 788889999999999999999886 345422 3445566664 4567888988887
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-09 Score=112.65 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+..+|+.|...|.+.|++++|+..|++..+.. +-+..++..+..+|.+.|++++|++.|++..+.++. +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~---~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45678888888888999999999998888753 335678888888888889999999988888876433 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
..+|.+.|++++|++.|++..+..|+. ..+..+...|.+.|++++|+..|++.++.. +-+...|..+...|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888888877754 567777888888888888888888888752 224677888888888888888
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-09 Score=94.01 Aligned_cols=202 Identities=10% Similarity=-0.029 Sum_probs=150.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSL 346 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~ 346 (577)
+.|+..+......+...|++++|...|+...+.. .+++...+..+..++...|++++|+..|++..+..|+. ..+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHH
Confidence 3466788888899999999999999999998873 22466777778899999999999999999999987764 45777
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNV-------VIYDCLIHAYCQEERVREASELMKEMTGHGYLPI---ASTFNT 416 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ 416 (577)
+...|...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 8888999999999999999998852 2234 45888888889999999999999999884 576 345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
+...+... +..+++ .+. .. ...+...|.... ....+.+++|...+++..+ +.|+....
T Consensus 159 l~~~~~~~-----~~~~~~-~a~--~~-~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~ 216 (228)
T 4i17_A 159 LGVLFYNN-----GADVLR-KAT--PL-ASSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEI 216 (228)
T ss_dssp HHHHHHHH-----HHHHHH-HHG--GG-TTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHH-----HHHHHH-HHH--hc-ccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHH
Confidence 66666543 444455 333 11 112333443333 4456778999999999985 46665433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-10 Score=102.74 Aligned_cols=129 Identities=13% Similarity=0.066 Sum_probs=69.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHc------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEE------GGVP-NVVIYDCLIHAYCQEERVREASELMKEMTGH-------GYLP 409 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p 409 (577)
+..+...|...|++++|...|+++.+. ...| ...++..+...|...|++++|++.+++..+. ...|
T Consensus 130 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 209 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNG 209 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcch
Confidence 344444555555555555555555543 1122 2456777778888888888888888777642 1122
Q ss_pred CHH-HHHHHHHHHHhcCC------HHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 410 IAS-TFNTVLSGLCRQGN------VGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 410 ~~~-~~~~ll~~~~~~g~------~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
... .+..+.......+. +.++...++ ... ...| ....+..+..+|...|++++|.+++++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 210 DNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK-ACK----VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SCCCHHHHHHHHHHTTCCCCC-------------CCC----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-hcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 221 23333323332222 333333443 222 1233 566788888888888888888888888764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-09 Score=94.54 Aligned_cols=106 Identities=10% Similarity=0.032 Sum_probs=79.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN---FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|+.+.+..+..+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45566667777888899999999998888753 223 56777788888888999999999988887644433334456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCc
Q 008097 312 NSVLYGLYR--------ENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 312 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~p~~ 341 (577)
..+..++.. .|++++|...|+++.+..|+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 677777777 888888888888888877754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=93.90 Aligned_cols=102 Identities=7% Similarity=0.044 Sum_probs=75.5
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce----eh
Q 008097 269 WNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV----DR 344 (577)
Q Consensus 269 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 344 (577)
.+...+..+...+.+.|++++|...|+.+....+..+.....+..+..+|.+.|++++|...|++..+..|+.. .+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35566667777788889999999999988876433222245677788888888999999999988888766432 34
Q ss_pred HHHHHHhhh--------cCCHHHHHHHHHHHHHc
Q 008097 345 SLKILGFCV--------DGNVEDAKRCFDQMIEE 370 (577)
Q Consensus 345 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~ 370 (577)
..+...|.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455566666 88888888888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=86.87 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGI-SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33334444555555555555555555443321 113344444555555555555555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.1e-08 Score=86.48 Aligned_cols=184 Identities=7% Similarity=-0.051 Sum_probs=110.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGIS-W-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNS 313 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 313 (577)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+.+.+..|....-...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555566677778888888888887764211 1 13456667777888888888888888877763332111113333
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC
Q 008097 314 VLYGLYR------------------ENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN 375 (577)
Q Consensus 314 li~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 375 (577)
+..++.+ .|++++|...|+++.+..|+...... |......+... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~-------------a~~~l~~~~~~----~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD-------------ATKRLVFLKDR----L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH-------------HHHHHHHHHHH----H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH-------------HHHHHHHHHHH----H
Confidence 3344432 46677777777777776665432111 00000000000 0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIA----STFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
......+...|.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++|...++ .+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~-~l~ 211 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAK-IIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH-HHH
Confidence 011234567788888888888888888863 3432 357777888888888888888888 544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=87.19 Aligned_cols=218 Identities=14% Similarity=0.005 Sum_probs=144.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
-+.++|...|+++... .-.|....+..+.. |...+ |...|++.... + .++..++..+..++..
T Consensus 50 ~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~--~-~~~~~~~~~la~i~~~ 112 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKD--K-QNSPYELYLLATAQAI 112 (310)
T ss_dssp HHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTT--S-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhc--C-CCCcHHHHHHHHHHHH
Confidence 3456777777766421 12344444444443 33322 66777766654 2 3344555677788888
Q ss_pred cCCHHHHHHHHHHHhhcCC---CceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-----CHhhHHHHHHH--HHhcC
Q 008097 321 ENQQDEALEYLKQMEKLFP---RAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-----NVVIYDCLIHA--YCQEE 390 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~li~~--~~~~g 390 (577)
.|++++|++++.+.....| +...+...+..|.+.|+.+.|.+.+++|.+. .| +..+...+..+ ....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g 190 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATN 190 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhC
Confidence 9999999999988876654 3344566778888999999999999999874 45 24555666655 33334
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCC------CC-CcccHHHHHHHHHH
Q 008097 391 --RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGS------LP-GSGHYSPLIKALCE 461 (577)
Q Consensus 391 --~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~------~p-~~~~~~~li~~~~~ 461 (577)
++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++ .+.+....+ .| ++.++..+|.+...
T Consensus 191 ~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~-~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 191 KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE-LLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH-HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH-HHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 899999999998764 3664444455558889999999999998 544111010 24 67777677777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH
Q 008097 462 KGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
.|+ +|.+++.++.+ ..|+.
T Consensus 268 lgk--~a~~l~~qL~~--~~P~h 286 (310)
T 3mv2_B 268 QGL--DTEDLTNQLVK--LDHEH 286 (310)
T ss_dssp TTC--TTHHHHHHHHH--TTCCC
T ss_pred hCh--HHHHHHHHHHH--hCCCC
Confidence 786 88999999985 45664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-08 Score=79.21 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=79.4
Q ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008097 345 SLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ 424 (577)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 424 (577)
..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|...++++...+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334445555566666666666665542 2345566666777777777777777777776542 23455666666777777
Q ss_pred CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 425 GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 425 g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
|++++|..++++.+. ..| +...+..+..++.+.|++++|.+.++++.+
T Consensus 83 ~~~~~A~~~~~~~~~-----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALE-----LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777773333 223 455666777777777777777777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-08 Score=86.45 Aligned_cols=136 Identities=12% Similarity=0.058 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER- 391 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~- 391 (577)
+..+|.+.|++++|...|++..+..|+ ...+..+...|...|++++|...|++.++.. +.+..+|..+...|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444444443 2233444444445555555555555554431 1234455555555444332
Q ss_pred -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 392 -VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 392 -~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
.+.+...++.... ..|....+.....++...|++++|...|++.+. +.|+......+..
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~l~~ 198 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHHHHHH
Confidence 2233333333321 112222222233334445555555555554443 4455444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.5e-08 Score=85.97 Aligned_cols=136 Identities=7% Similarity=-0.050 Sum_probs=85.8
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQG 425 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g 425 (577)
+...|.+.|++++|...|++..+.. +.+...|..+...|...|++++|+..|++.++. .| +...+..+...+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 5666777788888888888877752 235677777888888888888888888887763 35 4556666666665554
Q ss_pred C--HHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008097 426 N--VGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLI 492 (577)
Q Consensus 426 ~--~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 492 (577)
. .+.+...++ ... ...|....+.....++...|++++|...+++.. .+.|+......|.+
T Consensus 137 ~~~~~~~~~~~~-~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYK-KLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHHHH
Confidence 3 333444444 221 112222233445556666778888888888877 46777665555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-07 Score=82.32 Aligned_cols=174 Identities=10% Similarity=-0.008 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC----ChHHHHHHH
Q 008097 219 GGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG----RIDDGLKIL 294 (577)
Q Consensus 219 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~ 294 (577)
+|.+.|+...+.| +...+..+-..|...+++++|+..|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455566666653 77888888888999999999999999998865 56777778787877 6 899999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCC---ceehHHHHHHhhh----cCCHHHHHHH
Q 008097 295 QLMEDSKEGSKGRISPYNSVLYGLYR----ENQQDEALEYLKQMEKLFPR---AVDRSLKILGFCV----DGNVEDAKRC 363 (577)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~ 363 (577)
+...+. + +...+..|...|.. .+++++|..+|++..+..|. ...+..+...|.. .+++++|...
T Consensus 77 ~~A~~~--g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEA--G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHT--T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHC--C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 998765 4 56677888888877 78899999999988887764 5667777777777 7788888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQE-E-----RVREASELMKEMTGHG 406 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 406 (577)
|++..+. +.+...+..+...|... | +.++|+..|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8888875 23455677777777653 2 7888888888887766
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-07 Score=84.79 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee----hHH
Q 008097 271 FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD----RSL 346 (577)
Q Consensus 271 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~ 346 (577)
...+..+...+.+.|++++|...|+.+....+..+.....+..+..++.+.|++++|+..|+++.+..|+... +..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888899999999999988764332222346777888899999999999999999888776542 333
Q ss_pred HHHHhhh------------------cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 347 KILGFCV------------------DGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 347 l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
+...|.+ .|+.++|...|+++++. .|+ ...+.+....- .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH----
Confidence 3333332 35566666666666653 222 22222111100 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC----cccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG----SGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 408 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
.....+...+.+.|++++|...|++.+. ..|+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLR-----DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHH-----HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0113456778899999999999996665 3453 3679999999999999999999999998653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-08 Score=85.32 Aligned_cols=116 Identities=8% Similarity=-0.001 Sum_probs=52.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
..|++++|+..+...... .+.+...+-.+...|.+.|++++|++.|++.++. .| +..+|..+...+...|++++|.
T Consensus 9 ~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHHH
Confidence 334444444444444331 0112233444445555555555555555555542 23 3344555555555555555555
Q ss_pred HHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHH-HHHHH
Q 008097 432 KLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASML-LVQMV 476 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~ 476 (577)
..|++.+. +.| +...|..+..+|.+.|++++|.+. +++..
T Consensus 86 ~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 86 ECYRRSVE-----LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHH-----HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred HHHHHHHH-----hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55553333 334 344455555555555555444332 34444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-06 Score=86.65 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR-QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
..|...+..+.+.+..+.|..+|++. ... .++...|......-.+ .++.+.|..+|+..+. ..+- ++..+...
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~--~~~~--~~~~~~~y 360 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL--KHPD--STLLKEEF 360 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH--HCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCCC--CHHHHHHH
Confidence 45777777777778888888898888 321 1233444322222222 3368889999986665 2211 34456777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcchHHHH
Q 008097 456 IKALCEKGGFQSASMLLVQMVGKGILPDYLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 456 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 503 (577)
++.....|+.+.|..++++.. .....|...+.--..+|+.+-.
T Consensus 361 id~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~ 403 (493)
T 2uy1_A 361 FLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELF 403 (493)
T ss_dssp HHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888872 2466788888777777776544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9.9e-08 Score=77.18 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
..|..+...|...|++++|.+.++++.
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.7e-07 Score=85.45 Aligned_cols=164 Identities=10% Similarity=0.032 Sum_probs=88.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 244 SSYCETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
..|...|++++|...|.+.... +-.+ -..+|..+...|.+.|++++|...|++.....
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------- 106 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY----------------- 106 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-----------------
Confidence 3455666666666666655432 1010 12345556666666666666666666554320
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVP-NVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~ 393 (577)
...|+...+. ..+..+...|.. |++++|+..|++.... +..+ ...+++.+...|.+.|+++
T Consensus 107 ~~~g~~~~~a-------------~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 107 VENGTPDTAA-------------MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HTTTCHHHHH-------------HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHH-------------HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 1111111111 112223333444 5555555555554432 0000 1356777788888888888
Q ss_pred HHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 394 EASELMKEMTG----HGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 394 ~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+|+..|++..+ .+..++. ..+..+...+...|++++|...|++.+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888888764 2211111 245566666777788888888888544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.4e-08 Score=89.93 Aligned_cols=162 Identities=14% Similarity=-0.018 Sum_probs=92.6
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHH
Q 008097 268 SWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLK 347 (577)
Q Consensus 268 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l 347 (577)
+.+...+..+...+.+.|++++|...|+.....+++ +...+..+...+.+.|++++|...++++....|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 334455556666677777777777777777665333 45566666677777777777777777666655543322211
Q ss_pred H-HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 008097 348 I-LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI---ASTFNTVLSGLCR 423 (577)
Q Consensus 348 ~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 423 (577)
. ..+...+..+.|...|++..... +.+...+..+...|...|++++|++.|.++.+. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 1 12444455555566665555542 234555556666666666666666666666543 232 3345555555666
Q ss_pred cCCHHHHHHHHH
Q 008097 424 QGNVGTALKLVE 435 (577)
Q Consensus 424 ~g~~~~a~~~~~ 435 (577)
.|+.++|...++
T Consensus 268 ~g~~~~a~~~~r 279 (287)
T 3qou_A 268 LGTGDALASXYR 279 (287)
T ss_dssp HCTTCHHHHHHH
T ss_pred cCCCCcHHHHHH
Confidence 666666555555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.6e-08 Score=102.48 Aligned_cols=171 Identities=9% Similarity=-0.026 Sum_probs=134.0
Q ss_pred HcCCChHHHHHHHHHHH--------hccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhh
Q 008097 282 CSGGRIDDGLKILQLME--------DSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFC 352 (577)
Q Consensus 282 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 352 (577)
...|++++|.+.++... .. .+.+...+..+...+.+.|++++|+..|+++.+..|+. ..+..+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 67889999999999887 33 23356678888888999999999999999998876654 56777788888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
..|++++|...|++..+.. +.+...|..+..+|.+.|++++ ++.|++..+. .| +...+..+..++.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998863 2357788889999999999999 9999998874 35 5567888888999999999999
Q ss_pred HHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 432 KLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
..|++.+. +.| +...|..+..++...|+
T Consensus 555 ~~~~~al~-----l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPP-----TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCT-----TSTTHHHHHHHHHHHTC----
T ss_pred HHHHhhcc-----cCcccHHHHHHHHHHHHccCC
Confidence 99994443 567 45677777777766554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=4.9e-06 Score=83.64 Aligned_cols=371 Identities=9% Similarity=-0.063 Sum_probs=185.0
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCCC-CHhh
Q 008097 7 SPPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE--DIDLARAFYRKKMMASGVQG-DDYT 83 (577)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~a~~~~~~~m~~~~~~~-~~~~ 83 (577)
+..-..+|...+..+-. |+++.+..+|++.... .|++..|...+....+. ..+....+|+..+...|..| +...
T Consensus 11 i~~aR~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred hHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 34445678888888766 8899999999999873 47999999988877665 34567778885555556444 5667
Q ss_pred HHHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh---cCCHhHHHHHHHhccCCCceeHHHHHHH
Q 008097 84 YAILMKGLC----LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK---NGKVGRARSLMSDMEEPNDVTFSILICA 156 (577)
Q Consensus 84 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~li~~ 156 (577)
|...+..+. ..++++.+.++|+..++.. +. .+..+-..|.. ......+.++..+..
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~------------- 150 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDFENFELELNKITGKKIVGDTL------------- 150 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHHHHHHHHHCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHHHHHHHHhccccHHHHHHHHh-------------
Confidence 777776543 3467888999999998742 21 11222222221 111112222221110
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc--CC-----HhHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 008097 157 YCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSV--GR-----VMDAVEILEESGEQGRLGKVKGGCRFLKEMER 229 (577)
Q Consensus 157 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 229 (577)
..+..|...++.+...-...+...|...+.--... +- ...+..+|+ +...
T Consensus 151 ----~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye-------------------~al~ 207 (493)
T 2uy1_A 151 ----PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN-------------------YILD 207 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH-------------------HHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH-------------------HHHH
Confidence 01112222222211100000112232222221111 00 112222322 2222
Q ss_pred cCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc---C----
Q 008097 230 KGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSK---E---- 302 (577)
Q Consensus 230 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~---- 302 (577)
.. +.+...|...+.-+.+.|+++.|..+|++.... +.+...+.. |+...+.++. ++.+...- .
T Consensus 208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESA 277 (493)
T ss_dssp HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-------
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchh
Confidence 11 113444555555555556666666666665554 222222211 1111111111 11111100 0
Q ss_pred C---CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHH---HHhhh-cCCHHHHHHHHHHHHHcCCCCC
Q 008097 303 G---SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKI---LGFCV-DGNVEDAKRCFDQMIEEGGVPN 375 (577)
Q Consensus 303 ~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~---~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 375 (577)
+ .......|...+....+.+..+.|..+|+++ + .|. .++...+ ..-.. .++.+.|..+|+...+. .+.+
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~ 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDS 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTC
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCC
Confidence 0 0001234555566666666777777777777 3 222 1222211 11112 23577888888877775 2223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|...++.....|+.+.|..+|+++. .....|...+.-=...|+.+.+..++++.+.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556666776777788888888888762 2455666666655667888888777775554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.80 E-value=8.3e-08 Score=101.17 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=147.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 247 CETGVLDSALDVFNDMK--------IDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 247 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
...|++++|+..|++.. +. .+.+...+..+...|.+.|++++|.+.|+.+.+.++. +...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHH
Confidence 78899999999999988 33 2445678888899999999999999999999987443 677899999999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASE 397 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 397 (577)
.+.|++++|.+.|+++.+..|+. ..+..+...|.+.|++++ ...|++..+.+ +.+...|..+..+|.+.|++++|++
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988754 567888889999999999 99999999863 3467889999999999999999999
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHHHHhcCC--------HHHHHHHHH
Q 008097 398 LMKEMTGHGYLPIA-STFNTVLSGLCRQGN--------VGTALKLVE 435 (577)
Q Consensus 398 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~--------~~~a~~~~~ 435 (577)
.|++..+ +.|+. ..+..+..++...|. +++|.+.+.
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~ 600 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVE 600 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHH
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHh
Confidence 9999987 45764 456677777655444 555555555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-08 Score=82.30 Aligned_cols=143 Identities=13% Similarity=0.049 Sum_probs=115.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
|...+...|++++|++.+.......|+ ...+..+...|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 455667788999999999998876664 4556778889999999999999999999863 34688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHhhcccCCCCCC-CcccHHHHHHHHHHcCC
Q 008097 393 REASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKL-VEEDMRGIGRGSLP-GSGHYSPLIKALCEKGG 464 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~ 464 (577)
++|+..|++..+. .| +...+..+...|.+.|+.++|.+. +++.+. +.| ++..|.....++.+.|+
T Consensus 82 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-----l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-----LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999984 56 567888999999999999876654 575666 677 67778877777777764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-06 Score=78.18 Aligned_cols=233 Identities=12% Similarity=0.020 Sum_probs=168.6
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH----Hhc--
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG--RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL----YRE-- 321 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~-- 321 (577)
...++|+.++..++... +-+...|+.--..+...| +++++.+.++.+...++. +..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHhccc
Confidence 33468888888888763 224455676666777777 899999999888876433 556676555444 444
Q ss_pred -CCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------
Q 008097 322 -NQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVE--DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER------ 391 (577)
Q Consensus 322 -g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------ 391 (577)
+++++++++++++.+..|. ...|+.-.....+.|.++ ++++.++++++..+ .|...|+.-...+...|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 7888999999999887664 456777666677778877 99999999998743 588889888777777776
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGT-ALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASM 470 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 470 (577)
++++++.+++++... +-|...|+..-..+.+.|+..+ ...+.+ .+...+..-..++..+..++++|.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL-QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH-TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH-HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999999999743 2367778888888888888555 445666 4441110112366788999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHH
Q 008097 471 LLVQMVGKGILPD-YLTWNSL 490 (577)
Q Consensus 471 ~~~~m~~~~~~p~-~~~~~~l 490 (577)
+++.+.++ +.|- ...|+-.
T Consensus 280 ~~~~l~~~-~Dpir~~yW~~~ 299 (306)
T 3dra_A 280 VYDLLKSK-YNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHT-TCGGGHHHHHHH
T ss_pred HHHHHHhc-cChHHHHHHHHH
Confidence 99999753 3443 3445543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-07 Score=79.41 Aligned_cols=160 Identities=8% Similarity=-0.124 Sum_probs=98.1
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcC----CHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDG----NVEDAKRCFDQMIEEGGVPNVVIYDCLIHA 385 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 385 (577)
.+..+...|...+++++|...|++..+.. +...+..+...|.. + +.++|...|++..+. -+...+..+...
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---g~~~a~~~Lg~~ 94 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---GSKSGEIVLARV 94 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHH
Confidence 33333333434444444444444433321 22223333344444 4 667777777777664 356677777777
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHHHH
Q 008097 386 YCQ----EERVREASELMKEMTGHGYL-PIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLI 456 (577)
Q Consensus 386 ~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li 456 (577)
|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|..+|++... ..++...+..|.
T Consensus 95 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-----~~~~~~a~~~Lg 169 (212)
T 3rjv_A 95 LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS-----LSRTGYAEYWAG 169 (212)
T ss_dssp HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----TSCTTHHHHHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-----cCCCHHHHHHHH
Confidence 766 77888888888888876521 015567777777777 7788888888885555 223555677777
Q ss_pred HHHHHc-C-----ChhHHHHHHHHHHHCC
Q 008097 457 KALCEK-G-----GFQSASMLLVQMVGKG 479 (577)
Q Consensus 457 ~~~~~~-g-----~~~~A~~~~~~m~~~~ 479 (577)
.+|... | ++++|...+++..+.|
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777654 3 7888888888887766
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-08 Score=82.69 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
.+..+..+|...|+.++|...+++
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 444444444444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=80.92 Aligned_cols=161 Identities=16% Similarity=0.071 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHH-H-
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKIL-G- 350 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~- 350 (577)
.+......+.+.|++++|...|+.....+++ +...+..+...+.+.|++++|...++++.+..|+ ..+..+.. .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~ 83 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS---RGDVKLAKADCLLETKQFELAQELLATIPLEYQD-NSYKSLIAKLE 83 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCC-hHHHHHHHHHH
Confidence 3455666778888888888888887765333 5667888888888888888888888888777663 22222211 1
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 429 (577)
+...+....|...|++..+.. +.+...+..+...+...|++++|+..|+++.+..-.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 122233345678888877752 2357778888888888888888888888888743221 24567778888888888888
Q ss_pred HHHHHHHhh
Q 008097 430 ALKLVEEDM 438 (577)
Q Consensus 430 a~~~~~~~m 438 (577)
|...|++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-07 Score=86.39 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=112.7
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
.|++++|.+++++..+... .. .+...++++.|...|.+. ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 3556677777776655311 11 011146777777776653 45566777777777777766
Q ss_pred HhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHH
Q 008097 174 FSF----GFVP-DVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP-NVDTYNILISSYC 247 (577)
Q Consensus 174 ~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~ 247 (577)
... +-.+ -..+|..+...|...|++++|...++.++.. +.. .|-.. -..+++.+...|.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l------------~~~---~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM------------YVE---NGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH------------HHT---TTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------------HHH---cCCHHHHHHHHHHHHHHHH
Confidence 432 1111 1345666667777777777777776654432 111 11000 1245666667777
Q ss_pred hcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC--C-cccHHHHHHHHH
Q 008097 248 ETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG--R-ISPYNSVLYGLY 319 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~-~~~~~~li~~~~ 319 (577)
. |++++|+..|++.... |..+ ...++..+...|.+.|++++|...|++.....+.... . ...+..+..++.
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~ 206 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL 206 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence 7 8888888888776542 1000 1345666666777777777777777766543111100 0 112333444444
Q ss_pred hcCCHHHHHHHHHHHhhcCC
Q 008097 320 RENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 320 ~~g~~~~A~~~~~~~~~~~p 339 (577)
..|++++|...|++.. ..|
T Consensus 207 ~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 207 HRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HTTCHHHHHHHHHHHT-TST
T ss_pred HcCCHHHHHHHHHHHh-CCC
Confidence 4555555555555555 444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.7e-07 Score=94.36 Aligned_cols=150 Identities=11% Similarity=-0.049 Sum_probs=113.0
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKR 362 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 362 (577)
.|++++|.+.+++..+..+. +...|..+...+.+.|++++|.+.+++..+..|+ ...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998876332 5678889999999999999999999999998776 4567778889999999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHhh
Q 008097 363 CFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQ---GNVGTALKLVEEDM 438 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~m 438 (577)
.|++..+.. +.+...|..+...|...|++++|++.|++..+. .| +...+..+...+... |+.++|...+++.+
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999998863 346788999999999999999999999999874 35 566788889999999 99999999999666
Q ss_pred c
Q 008097 439 R 439 (577)
Q Consensus 439 ~ 439 (577)
.
T Consensus 156 ~ 156 (568)
T 2vsy_A 156 A 156 (568)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-06 Score=78.34 Aligned_cols=164 Identities=9% Similarity=-0.035 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCce-------ehHHHHHHhhhcCCHHHHHHHHHHHHHcCC---CCC--HhhHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAV-------DRSLKILGFCVDGNVEDAKRCFDQMIEEGG---VPN--VVIYD 380 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~ 380 (577)
..+..+...|++++|.+.+.+..+..+... .+..+...|...|++++|...|++...... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344455556666666666655554333211 112234455677788888888887765311 111 44788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-CcccH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGH-GYLPI-----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GSGHY 452 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~ 452 (577)
.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..++++.+... ..+..+ -...|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8999999999999999999988721 01122 2578888889999999999999999665510 011111 25678
Q ss_pred HHHHHHHHHcCChhHH-HHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSA-SMLLVQMV 476 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A-~~~~~~m~ 476 (577)
..+..+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8899999999999999 77777765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-06 Score=78.01 Aligned_cols=162 Identities=8% Similarity=-0.020 Sum_probs=116.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee-------hHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD-------RSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PN----VVIYDCL 382 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 382 (577)
+..+...|++++|..++++..+..+.... +..+...|...|++++|...|++....... ++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 55667778888888888877764433221 223555667778899999999998874222 22 2368999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-CcccHHH
Q 008097 383 IHAYCQEERVREASELMKEMTG----H-GYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GSGHYSP 454 (577)
Q Consensus 383 i~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~~~~~~ 454 (577)
...|...|++++|+..|+++.+ . +..|.. .++..+...|.+.|++++|..++++.+.-. ..+..+ -...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999873 1 222322 367888899999999999999998665410 111222 2567888
Q ss_pred HHHHHHHcCC-hhHHHHHHHHHH
Q 008097 455 LIKALCEKGG-FQSASMLLVQMV 476 (577)
Q Consensus 455 li~~~~~~g~-~~~A~~~~~~m~ 476 (577)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999995 699999998876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-07 Score=84.04 Aligned_cols=164 Identities=10% Similarity=-0.024 Sum_probs=130.9
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcc-cHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRIS-PYNS 313 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 313 (577)
+...+..+...+...|++++|...|++..... +-+...+..+...+.+.|++++|...++.+....+ +.. ....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----DTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----SHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----chHHHHHH
Confidence 45667778888899999999999999998763 34677888899999999999999999998876532 222 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCC
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGV-PNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~ 391 (577)
....+.+.++.++|...+++.....|+. ..+..+...|...|++++|...|.++.+.... .+...+..++..|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 3334667788888999999998887764 56778888999999999999999999986322 126689999999999999
Q ss_pred HHHHHHHHHHHH
Q 008097 392 VREASELMKEMT 403 (577)
Q Consensus 392 ~~~A~~~~~~m~ 403 (577)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999999888765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=6e-07 Score=92.82 Aligned_cols=153 Identities=14% Similarity=0.018 Sum_probs=117.6
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.+++..+..+. +...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999988653 346788999999999999999999999999986333 6678899999999999999999
Q ss_pred HHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 008097 329 EYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE---ERVREASELMKEMTG 404 (577)
Q Consensus 329 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 404 (577)
+.+++..+..|+. ..+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999999987764 567788889999999999999999999863 34678899999999999 999999999999987
Q ss_pred CC
Q 008097 405 HG 406 (577)
Q Consensus 405 ~g 406 (577)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 54
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-05 Score=73.89 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--CHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhH
Q 008097 162 NLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG--RVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTY 239 (577)
Q Consensus 162 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 239 (577)
..++|++++++++... +-+...|+.--..+...| .++++++. ++.+....++ +..+|
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~-------------------~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDW-------------------CEEIALDNEK-NYQIW 106 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHH-------------------HHHHHHHCTT-CCHHH
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHH-------------------HHHHHHHCcc-cHHHH
Confidence 3356777776666543 112344555555555555 55555444 3333333222 45555
Q ss_pred HHHHHHH----Hhc---CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH--HHHHHHHHHHhccCCCCCCccc
Q 008097 240 NILISSY----CET---GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRID--DGLKILQLMEDSKEGSKGRISP 310 (577)
Q Consensus 240 ~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~ 310 (577)
+.--..+ ... +++++++.+++.+.+.. +-|..+|+.-.-.+.+.|.++ ++.+.++.+.+.++. +...
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~---N~sA 182 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK---NNSA 182 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT---CHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC---CHHH
Confidence 5544444 334 67788888888887654 446677776666666777776 788888888776332 5666
Q ss_pred HHHHHHHHHhcCC------HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHH-HHHHHHHHHHcC--CCCCHhhHH
Q 008097 311 YNSVLYGLYRENQ------QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVED-AKRCFDQMIEEG--GVPNVVIYD 380 (577)
Q Consensus 311 ~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~ 380 (577)
|+.-...+.+.+. ++++++.++++....|+ ...|+.+...+.+.|+... ...+.+++...+ -+.+...+.
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 262 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALE 262 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 6666555555554 66666666666665543 3345454444555554322 334444443321 123556666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 381 CLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
.+...|.+.|+.++|+++++.+.+
T Consensus 263 ~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 263 TLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Confidence 666666666666667766666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-05 Score=73.60 Aligned_cols=167 Identities=7% Similarity=-0.026 Sum_probs=91.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCcCHH----HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc----ccHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKIDG-ISWNFV----TYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI----SPYN 312 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~ 312 (577)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+........ .++. .+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 3566777888888888888877642 122211 2334555666677888888888877763211 1121 1466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCC
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHAYCQEER 391 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 391 (577)
.+...|...|++++|...|+++.+. ++... +..+ ...+|..+...|.+.|+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~--------------------------~~~~~--~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQ--------------------------LEALH--DNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------------------HHHSS--CCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------------------------HHhcc--cchhHHHHHHHHHHHHHHHHhH
Confidence 6666777777777777766665431 00000 0011 12245555666666666
Q ss_pred HHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 008097 392 VREASELMKEMTG----HGYLPI-ASTFNTVLSGLCRQGN-VGTALKLVEED 437 (577)
Q Consensus 392 ~~~A~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~ 437 (577)
+++|++.+++..+ .+..+. ..++..+..++.+.|+ .++|...+++.
T Consensus 212 y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 6666666655542 121222 3455555666666663 46666555533
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.3e-07 Score=80.91 Aligned_cols=197 Identities=12% Similarity=0.002 Sum_probs=135.0
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHH-------HHHHHhcCCHHHHHHHHHHHhhcCCCcee------------
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSV-------LYGLYRENQQDEALEYLKQMEKLFPRAVD------------ 343 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------ 343 (577)
..++...|.+.|..+...+++ ....|..+ ...+...++..+++..+....++.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 467777888888877776433 44556666 34555555555555555555554443110
Q ss_pred ----------hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H
Q 008097 344 ----------RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI--A 411 (577)
Q Consensus 344 ----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~ 411 (577)
...+...+...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1224556778899999999998887643 544366666678889999999999998665432 121 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 412 STFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 412 ~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
..+..+..++...|++++|+..|++... ....| ..........++.+.|+.++|...|+++.. ..|+...+..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~a 246 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHH
Confidence 3577788899999999999999994433 22224 344677788889999999999999999985 4677555555
Q ss_pred H
Q 008097 490 L 490 (577)
Q Consensus 490 l 490 (577)
|
T Consensus 247 L 247 (282)
T 4f3v_A 247 L 247 (282)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-06 Score=74.59 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=88.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGN 426 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 426 (577)
+...+...|++++|...|++.. .|+...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 3445556677777777776663 3567777777788888888888888888777642 2345567777777788888
Q ss_pred HHHHHHHHHHhhcccCCC------------CCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 427 VGTALKLVEEDMRGIGRG------------SLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 427 ~~~a~~~~~~~m~~~~~~------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+++|...|++.+. ...+ ..| ....+..+..+|.+.|++++|.+.+++..+ +.|+.
T Consensus 87 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 8888888875444 1100 111 225677788888888888888888888874 44543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-06 Score=73.16 Aligned_cols=124 Identities=10% Similarity=-0.071 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGL 318 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 318 (577)
+..+...+...|++++|+..|++.. .|+...+..+...|...|++++|...|+......+ .+...|..+..++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHH
Confidence 4455566777788888888887663 55777777788888888888888888887776532 2556677777777
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCc-----------------eehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 319 YRENQQDEALEYLKQMEKLFPRA-----------------VDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 319 ~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...|++++|...|++..+..|+. ..+..+...|.+.|++++|...|++..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88888888888887777755432 2344455556666666666666666655
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-06 Score=76.17 Aligned_cols=184 Identities=9% Similarity=-0.043 Sum_probs=101.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCcCH---------------
Q 008097 214 LGKVKGGCRFLKEMERKGCLPNVDTYNIL-------ISSYCETGVLDSALDVFNDMKIDGISWNF--------------- 271 (577)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~--------------- 271 (577)
.++...|.+.|.+..+..+. ....|..+ ...+...++..+++..+..-.. +.|+.
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred CCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45555555556666665332 45667766 4555555556666655555443 22221
Q ss_pred -------HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---c
Q 008097 272 -------VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR---A 341 (577)
Q Consensus 272 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~ 341 (577)
.........+...|++++|.++|+.+...+++ +. ....+...+.+.+++++|+..|+...+..+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~---~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE---HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH---HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc---hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence 12233455566777788887777766543211 22 4445555667777777777777654442211 1
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN--VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
..+..+..++...|++++|+..|++.......|. ...+.....++.+.|+.++|..+|+++..
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344455566666666666666666654221132 23455555666666666666666666665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.5e-06 Score=68.19 Aligned_cols=92 Identities=12% Similarity=-0.005 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIK 457 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~ 457 (577)
|......|.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|+..|++.+. +.| +...|..+..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR-----LDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-----hhhhhhHHHHHHHH
Confidence 3444444444445555554444444321 11333444444444445555555544443333 233 3344444445
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
+|...|++++|.+.+++..
T Consensus 90 ~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=72.46 Aligned_cols=101 Identities=7% Similarity=-0.156 Sum_probs=76.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
...|..+...+.+.|++++|+..|++.... .| +...|..+..+|...|++++|...|++.+. +.| ++..|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-----l~P~~~~~~~ 108 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA-----LGKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSSSCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh-----hCCCCcHHHH
Confidence 456777777788888888888888888764 35 566777778888888888888888886655 556 567788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVGKGILPDYL 485 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 485 (577)
.+..+|.+.|++++|...+++..+ +.||..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888888888874 456653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=71.96 Aligned_cols=99 Identities=10% Similarity=-0.020 Sum_probs=51.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++....+|. +...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---CcHHHHHHHHH
Confidence 44444555555555555555555555442 224455555555555555555555555555554322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
|.+.|++++|...|++..+..|+
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 55555555555555555544433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.4e-06 Score=76.18 Aligned_cols=98 Identities=5% Similarity=-0.048 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC-H----HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC---cc
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWN-F----VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR---IS 309 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 309 (577)
.+...+..+...|++++|...+.+..+.....+ . ..+..+...+...|++++|...+............. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444556667778888888888777665422111 1 122334455666677777777777766432111101 22
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 310 PYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
+++.+...|...|++++|...|+++.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666666666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=74.81 Aligned_cols=125 Identities=9% Similarity=0.037 Sum_probs=90.8
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSG-LCRQGNV-- 427 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~-- 427 (577)
+...|++++|...|++..... +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677888888888877752 3467788888888888999999999998888642 2255667777777 6788888
Q ss_pred HHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 428 GTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
++|...|++.+. ..| +...+..+..+|...|++++|...+++..+. .|+.
T Consensus 98 ~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALA-----LDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPR 148 (177)
T ss_dssp HHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTT
T ss_pred HHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCC
Confidence 899988885555 345 5677888888899999999999999888753 4443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.8e-06 Score=69.48 Aligned_cols=122 Identities=15% Similarity=0.074 Sum_probs=64.3
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 427 (577)
...+...|++++|...|++..... +.+..+|..+...|...|++++|++.+++..+.. +.+...+..+...+...|++
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccH
Confidence 334445555555555555555431 2245556666666666666666666666665532 22344555566666666666
Q ss_pred HHHHHHHHHhhcccCCCCCC-CcccH--HHHHHHHHHcCChhHHHHHHHHHH
Q 008097 428 GTALKLVEEDMRGIGRGSLP-GSGHY--SPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p-~~~~~--~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
++|...|++.+. +.| +...+ ..++..+.+.|++++|.+.+++..
T Consensus 98 ~~A~~~~~~a~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 98 RAALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666664443 233 22333 222333555566666666665543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.8e-07 Score=73.91 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=71.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++.+. +.| +...|.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-----MDIXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HSTTCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCchHHH
Confidence 34566667777788888888888888877632 22566677777778888888888888885555 445 567777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 008097 454 PLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 454 ~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+..+|...|++++|.+.+++..+
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888888887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.2e-06 Score=78.43 Aligned_cols=190 Identities=7% Similarity=-0.055 Sum_probs=123.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+..+...+...|++++|+..|++..... +.+...|..+...|.+.|++++|...++...+..+. +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 45667778888889999999999999888763 336778888888999999999999999988876332 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
..++...|++++|...|.+..+..|+. ..+...+....+ ...+ ..+........+++......+.. + ..|+.+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~ 152 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTR-L-IAAERE 152 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence 889999999999999998887765432 111111211111 1111 11222333333444444444433 2 368888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc-CCHHHHHHHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTFN-TVLSGLCRQ-GNVGTALKLVEE 436 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~-g~~~~a~~~~~~ 436 (577)
+|++.+++..+. .|+..... .+...+... +..++|.++|.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888887763 56554433 333333333 667888888873
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00011 Score=69.08 Aligned_cols=223 Identities=11% Similarity=0.048 Sum_probs=143.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc-C-CH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE-N-QQ 324 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~ 324 (577)
+.+..++|++++.+++... +-+..+|+.--..+...| .++++.+.++.+...++. +..+|+.-...+.+. + ++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCC
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCCh
Confidence 3444567777777777653 224445665555555666 477788888777765322 556666665555555 5 67
Q ss_pred HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----
Q 008097 325 DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVE--------DAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER---- 391 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 391 (577)
++++++++++.+..|. ...|+.......+.|..+ ++++.++++++.. +.|...|+.....+.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 7788888887776654 344554444433434444 8888888888864 3478889888888877776
Q ss_pred ---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhcccC--CCC
Q 008097 392 ---VREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNV--------------------GTALKLVEEDMRGIG--RGS 445 (577)
Q Consensus 392 ---~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~m~~~~--~~~ 445 (577)
++++++.+++++.. .| |...|+.+-..+.+.|+. .+...+.. .+.... .+.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 297 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGF-PMPSDPLPEDT 297 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------C-CCCC-CCCSSC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHH-HHHhccccccc
Confidence 68899999998874 45 666677766666666654 23333333 333100 001
Q ss_pred -CCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 446 -LPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 446 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
.+++..+..++++|...|+.++|.++++.+.++
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 246677889999999999999999999999754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-06 Score=66.42 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+.++. +...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHH
Confidence 345556666777777777777777766543 335666666777777777777777777776665322 4555666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCc
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRA 341 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~ 341 (577)
++...|++++|.+.|++..+..|+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 6666666666666666666665543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=8.7e-06 Score=64.38 Aligned_cols=93 Identities=16% Similarity=0.210 Sum_probs=39.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
.|..+...+...|++++|++.++++.+.. +.+..++..+...+...|++++|..++++.+. ..| +...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~la 84 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-----LDPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCccHHHHHHHH
Confidence 34444444444444444444444444321 11233344444444444444444444442222 112 333444444
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~ 476 (577)
..|...|++++|...++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH
Confidence 44444444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-06 Score=71.01 Aligned_cols=124 Identities=10% Similarity=0.082 Sum_probs=80.1
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHcCCCh--HHHH
Q 008097 215 GKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRG-LCSGGRI--DDGL 291 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~a~ 291 (577)
|++++|...++....... .+...|..+...|...|++++|...|++..+.. +.+...+..+... |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 444555555555554422 255677777777777888888888887776643 2355666666666 6677777 7788
Q ss_pred HHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 292 KILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..++.+....+. +...+..+...+...|++++|...|+++.+..|+...
T Consensus 102 ~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 102 AMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 777777765322 4556667777777777777777777777776665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.36 E-value=9.2e-06 Score=68.25 Aligned_cols=26 Identities=12% Similarity=-0.046 Sum_probs=10.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
.|..+...|...|++++|...|++..
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-06 Score=74.62 Aligned_cols=101 Identities=9% Similarity=-0.085 Sum_probs=58.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC--
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGH----GYLP--IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-- 447 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-- 447 (577)
..++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++.+......-.|
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 345666666777777777777777665531 1111 12345566666777777777777776444310000011
Q ss_pred CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 448 GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 448 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
....+..+..++...|++++|.+.+++..
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 12335667777777777777777777665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-06 Score=71.11 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|+.....++. +...+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHH
Confidence 34455566667777777777777777776553 335666677777777777777777777777665332 55566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
..+|...|++++|...|++..+..|+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 77777777777777777776665444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.5e-06 Score=66.82 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=72.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------ 448 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------ 448 (577)
...+..+...|.+.|++++|++.|++.++. .| +...|..+..+|...|++++|+..+++.+. +.|+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE-----VGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH-----hCcccchhhH
Confidence 345667777778888888888888887763 35 455677777778888888888888875554 2331
Q ss_pred --cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 449 --SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 449 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
...|..+..++...|++++|.+.+++..+ ..||+.+...
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 121 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence 13566677777888888888888888764 4566655443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-05 Score=64.02 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=92.5
Q ss_pred eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008097 342 VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGL 421 (577)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 421 (577)
..+..+...|...|++++|...|+++.... +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456777888999999999999999998863 3467889999999999999999999999998753 34677888999999
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK 462 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~ 462 (577)
...|++++|..+|++.+. ..| +...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE-----LDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHhc
Confidence 999999999999995555 345 455566666655544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=80.55 Aligned_cols=192 Identities=7% Similarity=-0.056 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHH
Q 008097 270 NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKI 348 (577)
Q Consensus 270 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~ 348 (577)
+...+..+...+.+.|++++|...|+......+. +...|..+..+|.+.|++++|...+++..+..|+. ..+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4556777777888888888888888888876332 56677888888888888888888888888876654 4566677
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNV 427 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 427 (577)
.+|...|++++|...|++..+.. |+ ...+...+....+. .++.. +.........++......+ ..+ ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHH
Confidence 77888888888888888877642 21 11111122111111 11111 1122222233343333333 222 25777
Q ss_pred HHHHHHHHHhhcccCCCCCCC-cccHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 008097 428 GTALKLVEEDMRGIGRGSLPG-SGHYSPLIKALCEK-GGFQSASMLLVQMVG 477 (577)
Q Consensus 428 ~~a~~~~~~~m~~~~~~~~p~-~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 477 (577)
++|.+.+++.+. ..|+ ......+...+.+. +.+++|.++|.+..+
T Consensus 152 ~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHE-----GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGT-----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhc-----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777763333 3453 33334444445554 567777777777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=64.04 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=10.8
Q ss_pred cHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 451 HYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 451 ~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+..+..+|.+.|++++|.+.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-06 Score=65.92 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=74.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.+. ..| +...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-----LEPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCCchHHH
Confidence 345567777777777777777777777777632 22556677777777777777777777775444 234 55667
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLS 495 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 495 (577)
..+..+|.+.|++++|.+.+++..+. .|+ ...|..+-.++.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 77777777777777777777777642 333 234444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.9e-06 Score=77.93 Aligned_cols=143 Identities=10% Similarity=-0.021 Sum_probs=95.2
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ 388 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 388 (577)
..+..+...+.+.|++++|...|++..+..|+.... ..+.+..+ .. -....|..+..+|.+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~----~~----~~~~~~~nla~~~~~ 208 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA----QA----LRLASHLNLAMCHLK 208 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH----HH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH----HH----HHHHHHHHHHHHHHH
Confidence 345556666666666666666666665554433210 00001000 00 014678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 389 EERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..+..++.+.|+.++
T Consensus 209 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-----LYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888742 22566788888888889999999998886665 456 56778888888888888888
Q ss_pred H-HHHHHHHH
Q 008097 468 A-SMLLVQMV 476 (577)
Q Consensus 468 A-~~~~~~m~ 476 (577)
| ..++++|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8 45666664
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.9e-06 Score=65.17 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=70.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++.+. +.| +...|..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~ 77 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-----KDPNFVRAYIR 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCcHHHHHH
Confidence 3456667777778888888888888877642 22566777777778888888888888875555 445 5667777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|...|++++|.+.+++..+
T Consensus 78 lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 78 KATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHH
Confidence 88888888888888888887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.9e-06 Score=65.31 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE 389 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 389 (577)
|..+...+.+.|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..+...|...
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 97 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAM 97 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 444444444444444444444444443332 2223333334444444444444444444431 12344444455555555
Q ss_pred CCHHHHHHHHHHHHh
Q 008097 390 ERVREASELMKEMTG 404 (577)
Q Consensus 390 g~~~~A~~~~~~m~~ 404 (577)
|++++|++.|++..+
T Consensus 98 ~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 98 KDYTKAMDVYQKALD 112 (133)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=9.9e-06 Score=64.69 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
...|..+...|...|++++|...|++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33444444444445555555555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-05 Score=67.90 Aligned_cols=157 Identities=11% Similarity=-0.055 Sum_probs=95.6
Q ss_pred hcCCHhHHHH---HHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHhhHHHHHHHHHhcCCHh
Q 008097 128 KNGKVGRARS---LMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFS----FGFVP-DVVTITKVLELLCSVGRVM 199 (577)
Q Consensus 128 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~----~g~~~-~~~~~~~ll~~~~~~g~~~ 199 (577)
..|++++|.+ ++..-+......++.+...+...|++++|+..|++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 33332222344555566666666666666666666543 12122 2456777778888889999
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHH
Q 008097 200 DAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP--NVDTYNILISSYCETGVLDSALDVFNDMKID----GISW-NFV 272 (577)
Q Consensus 200 ~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~ 272 (577)
+|...+...... ++ ..+..| ....+..+...+...|++++|...+++.... +.+. -..
T Consensus 84 ~A~~~~~~al~~------------~~---~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 84 AARRCFLEEREL------------LA---SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHHH------------HH---HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH------------HH---HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 988887665432 22 222111 2345777888889999999999999887642 1111 123
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 273 TYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 273 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
++..+...+...|++++|.+.+++..+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356677778888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.3e-06 Score=65.21 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHH
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG--YLPI----ASTFNTVLSGL 421 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~ll~~~ 421 (577)
...|.+.|++++|+..|++.++.. +.+...|+.+..+|...|++++|++.+++.++.. ..++ ..+|..+..++
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 334444455555555555544431 2234555555555666666666666655554311 0111 12344455555
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 008097 422 CRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~ 439 (577)
...|++++|++.|++.+.
T Consensus 94 ~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 666666666666664444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=75.58 Aligned_cols=157 Identities=10% Similarity=-0.080 Sum_probs=88.4
Q ss_pred cCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 249 TGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.+++++|...|+...... +-+...+..+...|.+.|++++|...|++.....+... +.. .+.+.
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-~~~--------------~~~~~ 189 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-SFS--------------NEEAQ 189 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-CCC--------------SHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccc-cCC--------------hHHHH
Confidence 345566665555443321 22567788899999999999999999999998743321 000 00000
Q ss_pred HHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008097 329 EYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYL 408 (577)
Q Consensus 329 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 408 (577)
.+-.. ....+..+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+. .
T Consensus 190 ~~~~~------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~ 260 (336)
T 1p5q_A 190 KAQAL------RLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--Y 260 (336)
T ss_dssp HHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 00000 01123334444455555555555555555532 234556666666666677777777777666653 3
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHH
Q 008097 409 P-IASTFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 409 p-~~~~~~~ll~~~~~~g~~~~a 430 (577)
| +...+..+..++.+.|+.++|
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 344555666666666666666
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00036 Score=65.18 Aligned_cols=84 Identities=8% Similarity=0.018 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC-HHHHH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG--RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ-QDEAL 328 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 328 (577)
+++++.+++.+.... +-+..+|+.-.-.+.+.+ .++++..+++.+.+.++. +..+|+.-...+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr---Ny~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCcCHHHHH
Confidence 344555555554432 224444444444444444 245555555555554222 44444444444444444 34555
Q ss_pred HHHHHHhhcCC
Q 008097 329 EYLKQMEKLFP 339 (577)
Q Consensus 329 ~~~~~~~~~~p 339 (577)
+.+.++.+..|
T Consensus 166 ~~~~~~I~~~p 176 (331)
T 3dss_A 166 AFTDSLITRNF 176 (331)
T ss_dssp HHHHHHHHHCS
T ss_pred HHHHHHHHHCC
Confidence 55555544433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.20 E-value=9.8e-06 Score=66.29 Aligned_cols=96 Identities=10% Similarity=-0.086 Sum_probs=63.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++.+. +.| ++..|..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~ 91 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-----MDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCCcHHHHH
Confidence 3445556666677777777777777776532 22455666666777777777777777775444 344 5566677
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|...|++++|.+.+++..+
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=4.6e-05 Score=59.38 Aligned_cols=96 Identities=13% Similarity=-0.008 Sum_probs=64.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.+. ..| +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-----LKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-----hCcccHHHHHH
Confidence 4456666677777777777777777776532 22455666666777777777777777774444 234 4566777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..++...|++++|.+.+++..+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777777777763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.6e-05 Score=62.36 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=81.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-C
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-G 448 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~ 448 (577)
.+...|..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++.+. ..| +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-----~~~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-----KDGGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-----hCccC
Confidence 35667778888888888888888888888863 466 56677777888888888888888885555 345 5
Q ss_pred cccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 008097 449 SGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLL 491 (577)
Q Consensus 449 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll 491 (577)
...|..+..+|...|++++|.+.+++..+ +.|+ ...|..+-
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 140 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHH
Confidence 67778888888888888888888888875 3454 34444333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=64.76 Aligned_cols=100 Identities=12% Similarity=-0.039 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+.....++. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcHHHHHHHH
Confidence 344555566677777777777777776553 335666677777777777777777777777765332 5556666777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
++...|++++|...|++..+..|+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777777777777777776665443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-05 Score=75.23 Aligned_cols=165 Identities=11% Similarity=0.016 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---c----eehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCC-Hhh
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPR---A----VDRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPN-VVI 378 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~ 378 (577)
+..+...|.+.|++++|.+.+..+.+..+. . ...+.+...+...|+.+.|..++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445556666666666666666655442111 1 11122233344557777777777766542 22222 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC-C---Cc
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGH----GYLPI-ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL-P---GS 449 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~-p---~~ 449 (577)
+..+...|...|++++|..++++.... +-+|. ..++..++..|...|++++|..++++... ....+. | -.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART-AANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHSCCCHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HhhcCCCchHHHH
Confidence 667778888888888888887776531 11222 33577777788888888888888774443 111111 1 12
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
..+..+...+...|++++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666677777788888877766654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00032 Score=65.85 Aligned_cols=31 Identities=16% Similarity=0.490 Sum_probs=21.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
++...+..+++.|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4566667777777777777777777777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.8e-05 Score=60.04 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=70.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+..+. ..+...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHH
Confidence 44566677777777888888888887777653 335666777777777778888888777777765221 1134556667
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhcCCC
Q 008097 315 LYGLYRE-NQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 315 i~~~~~~-g~~~~A~~~~~~~~~~~p~ 340 (577)
...+.+. |++++|.+.+....+..|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 7777777 7777777777777665554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=68.24 Aligned_cols=94 Identities=7% Similarity=-0.061 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPL 455 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~l 455 (577)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++.+. +.| +...+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS-----LNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-----HCCCcHHHHHHH
Confidence 567777777888888888888888877642 22556677777778888888888888875555 445 55667777
Q ss_pred HHHHHHcCChhHHH-HHHHHHH
Q 008097 456 IKALCEKGGFQSAS-MLLVQMV 476 (577)
Q Consensus 456 i~~~~~~g~~~~A~-~~~~~m~ 476 (577)
..++...|+.+++. ..++.|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777666666 4555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.5e-05 Score=63.15 Aligned_cols=98 Identities=10% Similarity=-0.050 Sum_probs=73.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
.+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+++.+. +.| +...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~ 80 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSVKAH 80 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCchhHHHH
Confidence 456777778888888888888888888877642 22456777777788888888888888885555 345 56677
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+|...|++++|...+++..+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=61.87 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...++...+.++. +...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Confidence 345555566666677777777776666542 335566666666666667777777666666655322 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhhcC
Q 008097 317 GLYRENQQDEALEYLKQMEKLF 338 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~ 338 (577)
++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 6666666666666666655543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=62.68 Aligned_cols=97 Identities=9% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC----cccHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG----SGHYSP 454 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~----~~~~~~ 454 (577)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..++++.+. ......++ ...|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHHHH
Confidence 3344444444444444444444444321 11333344444444444444444444443222 00000011 334444
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 008097 455 LIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
+..+|.+.|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44555555555555555555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=62.61 Aligned_cols=112 Identities=10% Similarity=0.061 Sum_probs=89.2
Q ss_pred ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 008097 343 DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGY--LPI----ASTFNT 416 (577)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~ 416 (577)
.+..+...|...|++++|...|++..... +.+...|..+...|...|++++|+..+++..+..- .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45667788899999999999999998863 44678899999999999999999999999986421 122 667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALC 460 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~ 460 (577)
+..++.+.|++++|...|++.+. ..|+...+..+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA-----EHRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHH
Confidence 99999999999999999996555 4566665555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-05 Score=59.96 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC---CcccHH
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP---GSGHYS 453 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p---~~~~~~ 453 (577)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+. ..| +...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~ 80 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-----VIEDEYNKDVWA 80 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----TSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCcccchHHHHH
Confidence 344444445555555555555555544421 12333444445555555555555555553333 122 234445
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHH
Q 008097 454 PLIKALCEK-GGFQSASMLLVQMV 476 (577)
Q Consensus 454 ~li~~~~~~-g~~~~A~~~~~~m~ 476 (577)
.+..++.+. |++++|.+.+++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh
Confidence 555555555 55555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.6e-05 Score=61.64 Aligned_cols=91 Identities=10% Similarity=-0.024 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLI 456 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li 456 (577)
+..+...+.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..|++.+. +.| +...+..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM-----LDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Confidence 444445555566666666666665542 23 344555555555666666666666654444 344 445555566
Q ss_pred HHHHHcCChhHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~ 476 (577)
.+|.+.|++++|...+++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-05 Score=61.10 Aligned_cols=95 Identities=15% Similarity=-0.003 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPR----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIH 384 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 384 (577)
..+..+...+...|++++|...|++..+..|+ ...+..+...|...|++++|...|++..+.. +.+...|..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 34455555566666666666666666555554 2344445555556666666666666655541 224556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 008097 385 AYCQEERVREASELMKEMTG 404 (577)
Q Consensus 385 ~~~~~g~~~~A~~~~~~m~~ 404 (577)
+|...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.1e-06 Score=72.49 Aligned_cols=164 Identities=9% Similarity=-0.073 Sum_probs=69.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC
Q 008097 244 SSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ 323 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 323 (577)
......|+++++.+.+..-... .......+..+...+...|++++|...|.......+.. ++.... .+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~--~~~~~----- 82 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-EEWDDQ--ILLDK----- 82 (198)
T ss_dssp ----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-TTCCCH--HHHHH-----
T ss_pred hhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-cccchh--hHHHH-----
Confidence 3344455555555555432211 01133445566666777777777777777776642221 110000 00000
Q ss_pred HHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
...+ ....+..+...|.+.|++++|...|++..+. .+.+...|..+..+|...|++++|++.|++..
T Consensus 83 -~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 83 -KKNI-----------EISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp -HHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0012233334444555555555555555443 12244555555566666666666666666655
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 404 GHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 404 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
+. .| +...+..+...+...|+.+++.
T Consensus 150 ~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 SL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 42 23 3334444444444444444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=7.7e-05 Score=58.04 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++......+. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHH
Confidence 345555556666666666666666665542 224555555666666666666666666666554211 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCC
Q 008097 317 GLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
++...|++++|...+++..+..|
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC
Confidence 55555555555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.05 E-value=3.7e-05 Score=64.53 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=74.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
+...|..+...|.+.|++++|++.|++.++. .| +...+..+..+|...|++++|+..|++.+. +.| +...|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~ 82 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATV-----VDPKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHH
Confidence 4556777778888888888888888888764 34 566777788888888888888888886555 455 56778
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 453 SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+|.+.|++++|.+.+++..+
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888774
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00027 Score=66.09 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHH
Q 008097 324 QDEALEYLKQMEKLFPR-AVDRSLKILGFCVDG--NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER-VREASELM 399 (577)
Q Consensus 324 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~ 399 (577)
+++++.+++.+....|. ...|+.-...+.+.+ .+++++.+++++.+.. +.|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34555555555554442 234444444444444 3566666666666652 3466677766666666666 46777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc--
Q 008097 400 KEMTGHGYLPIASTFNTVLSGLCRQ--------------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK-- 462 (577)
Q Consensus 400 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~-- 462 (577)
.++++.. +-|...|+.....+.+. +.++++++++.+.+. +.| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~-----~~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF-----TDPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH-----HSTTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHhccC
Confidence 7777643 22555555555444443 446777777776665 456 566666565555555
Q ss_pred ---------CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008097 463 ---------GGFQSASMLLVQMVGKGILPDYLTWNS 489 (577)
Q Consensus 463 ---------g~~~~A~~~~~~m~~~~~~p~~~~~~~ 489 (577)
+.++++++.++++.+ +.||. .|..
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle--~~pd~-~w~l 275 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQE--LEPEN-KWCL 275 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHh--hCccc-chHH
Confidence 567899999999984 67886 5653
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-05 Score=61.47 Aligned_cols=99 Identities=12% Similarity=-0.047 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.++. +...+..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Confidence 45556667777888888888888877653 336667777777788888888888888877776333 55567777777
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+.+.|++++|+..+++..+..|+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 77777777777777777766554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.1e-05 Score=63.18 Aligned_cols=105 Identities=8% Similarity=-0.015 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|+.....++. +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Confidence 34556667777778888888888888877653 336667777777788888888888888877776332 55667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCcee
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRAVD 343 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 343 (577)
..+|...|++++|...|++..+..|+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777788888888877777776555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00012 Score=58.32 Aligned_cols=91 Identities=14% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCce----ehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAV----DRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN---VVIYDCLIHA 385 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~ 385 (577)
.+...+.+.|++++|...|+++.+..|+.. .+..+...|.+.|++++|...|+++..... .+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHH
Confidence 344455555666666666665555444433 344444555566666666666666555321 12 3445556666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 008097 386 YCQEERVREASELMKEMTG 404 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~ 404 (577)
|...|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.2e-05 Score=61.78 Aligned_cols=99 Identities=9% Similarity=-0.053 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHH
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSV 314 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 314 (577)
+...|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...++......+. +...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHH
Confidence 45566666666677777777777777666543 334556666666666677777777776666655222 44556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhc
Q 008097 315 LYGLYRENQQDEALEYLKQMEKL 337 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~ 337 (577)
..++...|++++|...|.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 66666666666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00038 Score=68.80 Aligned_cols=61 Identities=8% Similarity=-0.128 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHC--C--CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKID--G--ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
++..+...|...|++++|..+++++... + -.+ ...++..++..|...|++++|..+++...
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4445555555666666666665554432 1 011 12344445555555555555555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=63.62 Aligned_cols=101 Identities=14% Similarity=-0.004 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-CCCCCC-Cc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH----GYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-GRGSLP-GS 449 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-~~~~~p-~~ 449 (577)
.++..+...|...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++.+... ..+..+ ..
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 35666777777778888888777776531 1111 13356666777778888888888877544310 011111 24
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
..+..+...|...|++++|.+.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4577778888888888888888887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.9e-05 Score=76.90 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=75.3
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 428 (577)
.|.+.|++++|...|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+. .| +...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 345667777777777777664 2234667777777777888888888888777764 34 4556777777777888888
Q ss_pred HHHHHHHHhhcccCCCCCC-CcccHHHHHHH--HHHcCChhHHHHHHH
Q 008097 429 TALKLVEEDMRGIGRGSLP-GSGHYSPLIKA--LCEKGGFQSASMLLV 473 (577)
Q Consensus 429 ~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~--~~~~g~~~~A~~~~~ 473 (577)
+|.+.|++.+. +.| +...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVK-----VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH-----HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888875555 344 34455555555 677778888877777
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.94 E-value=9.1e-05 Score=73.87 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=72.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHH
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSP 454 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~ 454 (577)
...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++.+. +.| +...+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~-----l~P~~~~a~~~ 390 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE-----VNPQNKAARLQ 390 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC----CHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHHHH
Confidence 4678888889999999999999999988743 22566788888899999999999999996655 566 6678888
Q ss_pred HHHHHHHcCChhHHH-HHHHHHHH
Q 008097 455 LIKALCEKGGFQSAS-MLLVQMVG 477 (577)
Q Consensus 455 li~~~~~~g~~~~A~-~~~~~m~~ 477 (577)
+..++.+.|+.++|. .++++|..
T Consensus 391 l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888776 34555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-05 Score=63.79 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTG----HGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
.+..+...+...|++++|.+.+++..+ .+..+ ...++..+...+...|++++|...+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 344444555555555555555554432 11111 122344455555555555555555553
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00013 Score=58.09 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNF---VTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
.+...+...|++++|...|++..+.. +.+. ..+..+..+|.+.|++++|...|+.+....+........+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455566677777777776666542 1122 3555566666666677777666666665422211113335555556
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCC
Q 008097 318 LYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 318 ~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+.+.|++++|...|+++.+..|+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC
Confidence 66666666666666666555444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.87 E-value=5e-05 Score=72.38 Aligned_cols=143 Identities=12% Similarity=0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
+..+...+.+.|++++|...|.+.....|+... +...|+.+++...+ ....|..+..+|.+.|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~~~~g 244 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHHHHcC
Confidence 555556666666666676666666655443221 11222222222211 1137888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHH-HHHcCChhH
Q 008097 391 RVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKA-LCEKGGFQS 467 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~-~~~~g~~~~ 467 (577)
++++|+..+++.++. .| +...+..+..+|...|++++|...|++.+. +.| +...+..+..+ ....+..++
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-----l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQK-----YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 35 567888899999999999999999995554 566 45556666655 334567788
Q ss_pred HHHHHHHHHH
Q 008097 468 ASMLLVQMVG 477 (577)
Q Consensus 468 A~~~~~~m~~ 477 (577)
+..++++|.+
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888873
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.6e-05 Score=62.10 Aligned_cols=101 Identities=10% Similarity=-0.028 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH-------GY---------LP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~---------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..+......+.+.|++++|+..|.+.++. .- .| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666666666666666666542 00 12 234577777788888888888888886655
Q ss_pred ccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 440 GIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 440 ~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
+.| +...|..+..+|...|++++|...+++..+ +.|+.
T Consensus 92 -----~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 92 -----REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp -----HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred -----cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 455 567788888888888888888888888774 45654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=72.32 Aligned_cols=120 Identities=7% Similarity=-0.093 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc----------------eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEKLFPRA----------------VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP 374 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 374 (577)
|..+...+.+.|++++|...|+++.+..|+. ..|..+..+|.+.|++++|+..|++.++.. +.
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~ 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 4444444555555555555555555443332 455666777888888888888888888763 34
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-ASTFNTVLSGLCRQGNVGTALKL 433 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 433 (577)
+...|..+..+|...|++++|+..|++.++. .|+ ...+..+..++.+.|+.+++.+-
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999998873 464 44677777777888888777643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00016 Score=59.09 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--cCC
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLPI-------------ASTFNTVLSGLCRQGNVGTALKLVEEDMRG--IGR 443 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~--~~~ 443 (577)
+......+.+.|++++|++.|++.++. .|+ ...|..+..++.+.|++++|+..+++.+.- ..-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 334444455555555555555555542 232 125666666666666666666666654440 000
Q ss_pred CCCC-CcccH----HHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 444 GSLP-GSGHY----SPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 444 ~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1256 44556 6777777777888888777777763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=73.61 Aligned_cols=116 Identities=14% Similarity=0.064 Sum_probs=66.4
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.+.+.|++++|.+.+++..+..|+ ...+..+...|.+.|++++|...|++..+.. +.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344556666666666666655544 3445555666666666666666666666642 23456677777777777777777
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008097 396 SELMKEMTGHGYLPI-ASTFNTVLSG--LCRQGNVGTALKLVE 435 (577)
Q Consensus 396 ~~~~~~m~~~g~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 435 (577)
++.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777653 232 2233333333 666677777777766
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.6e-05 Score=61.21 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008097 355 GNVEDAKRCFDQMIEEG--GVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTAL 431 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 431 (577)
|++++|+..|++.++.+ .+.+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555432 1122344555555555555555555555555542 23 3344555555555555555555
Q ss_pred HHHHHhhc
Q 008097 432 KLVEEDMR 439 (577)
Q Consensus 432 ~~~~~~m~ 439 (577)
..|++.+.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.9e-05 Score=60.15 Aligned_cols=86 Identities=13% Similarity=0.008 Sum_probs=44.3
Q ss_pred cCChhHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHH
Q 008097 249 TGVLDSALDVFNDMKIDG--ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 249 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 326 (577)
.|++++|+..|++..+.+ -+.+...+..+...|...|++++|...|++..+..+. +...+..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN---HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHcCCHHH
Confidence 355566666666655432 1223344555555666666666666666666554222 34445555555555555555
Q ss_pred HHHHHHHHhhc
Q 008097 327 ALEYLKQMEKL 337 (577)
Q Consensus 327 A~~~~~~~~~~ 337 (577)
|...+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00023 Score=68.56 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=58.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccH
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHY 452 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~ 452 (577)
+...|..+..+|.+.|++++|++.+++.++. .| +...+..+..+|...|++++|...|++.+. +.| +...+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~-----l~P~~~~~~ 344 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE-----IAPEDKAIQ 344 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCHHHH
Confidence 3456677777777777777777777777763 34 455666677777777777777777775554 345 45556
Q ss_pred HHHHHHHHHcCChhHHHH
Q 008097 453 SPLIKALCEKGGFQSASM 470 (577)
Q Consensus 453 ~~li~~~~~~g~~~~A~~ 470 (577)
..+..++.+.++.+++.+
T Consensus 345 ~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 345 AELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00031 Score=57.40 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGH-----GYLPIA-STF----NTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~-~~~----~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.|+.+..++.+.|++++|+..+++.++. .+.||. ..| .....++...|++++|+..|++.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666667777766666666652 114643 345 6666677777777777777775544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0011 Score=67.71 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC----------HHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcC
Q 008097 287 IDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ----------QDEALEYLKQMEKLFPRA-VDRSLKILGFCVDG 355 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 355 (577)
-++|.+.++.+...++. +..+|+.--..+...|+ ++++++.++.+.+..|.. ..|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 45666777776665322 44556555555555555 777888888887766643 45666666666777
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 008097 356 --NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE-RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQ-------- 424 (577)
Q Consensus 356 --~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 424 (577)
+++++...++++.+.. +.|..+|+.-...+.+.| .++++++.++++++.. .-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6688888888888863 357888998888888888 8899999999998754 22666777766666553
Q ss_pred ------CCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhH
Q 008097 425 ------GNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQS 467 (577)
Q Consensus 425 ------g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~ 467 (577)
+.++++.+++++.+. +.| +...|..+-.++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~-----~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF-----TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH-----HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh-----hCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999987776 567 77888888888888887555
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00043 Score=57.76 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008097 311 YNSVLYGLYRENQQDEALEYLKQMEK 336 (577)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~~~~ 336 (577)
+......+.+.|++++|+..|.+...
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00032 Score=69.88 Aligned_cols=128 Identities=9% Similarity=-0.005 Sum_probs=92.8
Q ss_pred hhhcCCHHHHHHHHHHHHHc-----CC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCCH-HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEE-----GG-VPN-VVIYDCLIHAYCQEERVREASELMKEMTG-----HG-YLPIA-STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~ 416 (577)
+...|++++|+.++++.++. |. .|+ ..+++.+...|...|++++|+.++++.++ .| -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44668888888888777654 11 122 45789999999999999999999988763 22 12433 35888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcccCCCCCC----CcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMRGIGRGSLP----GSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
|...|...|++++|..++++.+.....-.-| ...+.+.+..++...|++++|..+++++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998666522222233 2345667777888889999999999999764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00027 Score=67.23 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
..+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~------------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK------------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH------------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH------------HHHHHHHHH
Confidence 34566667777788888888888887654 333321 112222333222110 124555556
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHH-HHhcCCHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVP-NVVIYDCLIHA-YCQEERVR 393 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~~~ 393 (577)
+|.+.|++++|+..+++..+..|+ ...+..+..+|...|++++|...|++..+. .| +...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655543 334555556666666666666666666543 22 33344444433 22344556
Q ss_pred HHHHHHHHHHh
Q 008097 394 EASELMKEMTG 404 (577)
Q Consensus 394 ~A~~~~~~m~~ 404 (577)
++..+|.+|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 66667776654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00088 Score=64.47 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc
Q 008097 377 VIYDCLIHAYCQEERVREASELMKEMTGH--------------GYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGI 441 (577)
Q Consensus 377 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~ 441 (577)
..|..+...|.+.|++++|++.|++.++. ...| +...|..+..+|.+.|++++|+..+++.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 34666777788888888888888877651 0223 345788888999999999999999996666
Q ss_pred CCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 008097 442 GRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQT 498 (577)
Q Consensus 442 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~ 498 (577)
+.| +...|..+..+|.+.|++++|.+.+++..+ +.|+ ...+..+-.++...+
T Consensus 302 ---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 302 ---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred ---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 456 678899999999999999999999999985 4554 455555555544433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00039 Score=69.28 Aligned_cols=134 Identities=4% Similarity=-0.072 Sum_probs=79.8
Q ss_pred HHHhcCChhHHHHHHHHHHHC-----C-CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhc-----cCCCCCCcccHH
Q 008097 245 SYCETGVLDSALDVFNDMKID-----G-ISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDS-----KEGSKGRISPYN 312 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~ 312 (577)
.+...|++++|+.++++.++. | -.| ...+++.|...|...|++++|..++++.... ++..+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1 112 2356777788888888888888877765532 111111223466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008097 313 SVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERV 392 (577)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 392 (577)
.|...|...|++++|..++++..+ +++.......+....+.+.+-.++...+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~--------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~ 451 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA--------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMF 451 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777666655432 222222211111233455666777777888
Q ss_pred HHHHHHHHHHHh
Q 008097 393 REASELMKEMTG 404 (577)
Q Consensus 393 ~~A~~~~~~m~~ 404 (577)
++|..++.++++
T Consensus 452 ~~ae~~~~~~~~ 463 (490)
T 3n71_A 452 RQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00049 Score=52.83 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=56.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCC------
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPG------ 448 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~------ 448 (577)
+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++.+. +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----YTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----SCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----hCCCccHHHH
Confidence 44556666667777777777777777766532 22455666666677777777777777774444 3443
Q ss_pred -cccHHHHHHHHHHcCChhHHHHHHHH
Q 008097 449 -SGHYSPLIKALCEKGGFQSASMLLVQ 474 (577)
Q Consensus 449 -~~~~~~li~~~~~~g~~~~A~~~~~~ 474 (577)
...+..+..++...|++++|.+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 33445555555555555555444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0048 Score=62.96 Aligned_cols=169 Identities=8% Similarity=-0.062 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHhhcCCCce-ehHHHHHHhhhcCC----------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008097 322 NQQDEALEYLKQMEKLFPRAV-DRSLKILGFCVDGN----------VEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE 390 (577)
Q Consensus 322 g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 390 (577)
...++|++.++++....|+.. .|+.--..+.+.|+ ++++...++++.+.. +.+..+|+.-...+.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345788999999999888764 46655555555566 899999999999873 457889999999999999
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHc----
Q 008097 391 --RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQG-NVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEK---- 462 (577)
Q Consensus 391 --~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~---- 462 (577)
+++++++.++++.+.. .-|...|+.-..++.+.| ..+++++++++.+. ..| +...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-----~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-----RNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-----TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-----HCCCCccHHHHHHHHHHhhcccc
Confidence 7799999999999854 236778888888888889 89999999994444 456 777888888877764
Q ss_pred ----------CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcch
Q 008097 463 ----------GGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQTT 499 (577)
Q Consensus 463 ----------g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 499 (577)
+.+++|.+.+++... +.|+ ...|.-+-..+...+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 567899999999885 4454 5778877666655443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0036 Score=50.39 Aligned_cols=111 Identities=7% Similarity=-0.076 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTA 430 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a 430 (577)
+++++|...|++..+.|. |+ .. +...|...+.+++|++.|++..+.| +......+...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666542 22 22 5555555566666777777776654 44555556666665 6677777
Q ss_pred HHHHHHhhcccCCCCCCCcccHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 008097 431 LKLVEEDMRGIGRGSLPGSGHYSPLIKALCE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 431 ~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 479 (577)
..+|++... .-++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 81 ~~~~~~Aa~------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACG------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777774444 1345566666667766 677777777777776655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00045 Score=56.31 Aligned_cols=35 Identities=3% Similarity=-0.128 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
.+++|.+.++...+.. +.+...|+.+..++...++
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~ 51 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ 51 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcc
Confidence 3445555555555432 2245555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00033 Score=57.11 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhcccCCCCCC-CcccHH
Q 008097 386 YCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGN----------VGTALKLVEEDMRGIGRGSLP-GSGHYS 453 (577)
Q Consensus 386 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~m~~~~~~~~p-~~~~~~ 453 (577)
..+.+++++|++.+++..+. .| +...|..+..++...|+ +++|+..|++.+. +.| +...|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-----ldP~~~~A~~ 84 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-----IDPKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-----hCcCcHHHHH
Confidence 34567789999999999974 35 66778878888887766 4699999998777 788 678899
Q ss_pred HHHHHHHHcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008097 454 PLIKALCEKG-----------GFQSASMLLVQMVGKGILPDYLTWNSLLIC 493 (577)
Q Consensus 454 ~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 493 (577)
.+..+|...| ++++|.+.|++..+ +.|+...|..-+..
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 9999999875 89999999999985 68886655444433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00024 Score=54.66 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=59.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI-------ASTFNT 416 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ 416 (577)
+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|++.+++..+. .|+ ...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHH
Confidence 344555666777777777777777665 2336777888888888889999999888888863 454 344555
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 008097 417 VLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~ 435 (577)
+..++...|+.++|...++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 5555666665555544444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0017 Score=47.55 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 376 VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
...|..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555556666666666666555422 11344455555555566666666666654333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00081 Score=52.15 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 360 AKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 360 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
|...|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444421 2234455555555555555555555555555421 1123344555555555555555555555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0097 Score=47.81 Aligned_cols=86 Identities=14% Similarity=-0.022 Sum_probs=51.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
+...|...+.+++|.+.|++..+. -+...+..+...|.. .+++++|++.|++..+.| +...+..+...|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 444444555555566666666654 355566666666665 566777777777766654 3445555555666
Q ss_pred h----cCCHHHHHHHHHHhh
Q 008097 423 R----QGNVGTALKLVEEDM 438 (577)
Q Consensus 423 ~----~g~~~~a~~~~~~~m 438 (577)
. .++.++|..+|++..
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 5 666777777776433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0024 Score=49.34 Aligned_cols=79 Identities=16% Similarity=0.059 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHH
Q 008097 393 REASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASML 471 (577)
Q Consensus 393 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 471 (577)
++|++.|++..+.. +.+...+..+...+...|++++|...|++.+. +.| +...|..+..+|...|++++|...
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~ 75 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-----FDPTYSVAWKWLGKTLQGQGDRAGARQA 75 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----HCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35778888888743 23677888899999999999999999996666 455 577899999999999999999999
Q ss_pred HHHHHH
Q 008097 472 LVQMVG 477 (577)
Q Consensus 472 ~~~m~~ 477 (577)
+++..+
T Consensus 76 ~~~al~ 81 (115)
T 2kat_A 76 WESGLA 81 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=48.61 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008097 375 NVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m 438 (577)
+...|..+...|...|++++|+..|++.++. .| +...|..+..+|...|++++|...|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555666666666666655543 23 23345555555556666666665555333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0054 Score=44.65 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
...|..+...+...|++++|+..|++..+.. +.+...+..+...|.+.|++++|...+++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455666666777777777777777766542 234556666666677777777777777766655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.012 Score=55.10 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 008097 410 IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLT 486 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 486 (577)
+..++..+...+...|++++|...+++.+. +.|+...|..+...+.-.|++++|.+.+++... +.|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~-----Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGID-----LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcCh
Confidence 444444444444444555555555554443 234444455555555555555555555555542 4444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0062 Score=45.65 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHH
Q 008097 8 PPDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRK 70 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~ 70 (577)
|.++.++..+...|.+.|++++|+..|+...+.++. +...|..+-.+|... ++++|++.|++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 567888899999999999999999999998876543 456777788888887 99999999884
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.011 Score=55.56 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=33.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|...|++.+.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455555444444555555555555555532 5544444444555555555555555554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.072 Score=57.22 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDM 262 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m 262 (577)
...|..+...+.+.|+++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444444455555544444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0084 Score=58.59 Aligned_cols=88 Identities=8% Similarity=-0.057 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCC---C-CcccHHHHHH
Q 008097 389 EERVREASELMKEMTG---HGYLPI----ASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSL---P-GSGHYSPLIK 457 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~---p-~~~~~~~li~ 457 (577)
.|++++|+.++++..+ .-+.|+ ..+++.+..+|...|++++|..++++.+.....-.. | ...+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888887777653 212233 235777888888888888888887755542111112 2 2455788888
Q ss_pred HHHHcCChhHHHHHHHHHH
Q 008097 458 ALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 458 ~~~~~g~~~~A~~~~~~m~ 476 (577)
+|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888888888876
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.016 Score=56.69 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=56.8
Q ss_pred hhhcCCHHHHHHHHHHHHHc---CCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCCH-HHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEE---GGVPN----VVIYDCLIHAYCQEERVREASELMKEMTG-----HG-YLPIA-STFNT 416 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~ 416 (577)
+.+.|++++|..++++..+. -..|+ ..+++.+...|...|++++|+.++++.+. .| -.|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566777777777766653 11122 34677777888888888888888777653 12 12332 24677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc
Q 008097 417 VLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 417 ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
|...|...|++++|..++++.+.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888887777775444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.022 Score=55.60 Aligned_cols=94 Identities=9% Similarity=-0.082 Sum_probs=69.1
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC
Q 008097 159 KEENLVNALVLLEKSFSF---GFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~---g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 231 (577)
..|++++|+.++++.+.. -+-|+ ..+++.+..+|...|++++|..++++++. +++......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------i~~~~lG~~ 377 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK------------PYSKHYPVY 377 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHSCSS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH------------HHHHHcCCC
Confidence 357899999999887653 12222 46888999999999999999999876544 344444332
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008097 232 CLPNVDTYNILISSYCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 264 (577)
.+-...+++.|...|...|++++|+.+|++..+
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 222345788888999999999999999888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.029 Score=41.20 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHH
Q 008097 410 IASTFNTVLSGLCRQGN---VGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMV 476 (577)
Q Consensus 410 ~~~~~~~ll~~~~~~g~---~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 476 (577)
|...+..+..++...++ .++|..++++.+. +.| ++.....+...+.+.|++++|...|+++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-----~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-----LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444433222 4555555554444 344 44455555555555555555555555555
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.019 Score=56.09 Aligned_cols=99 Identities=8% Similarity=-0.082 Sum_probs=73.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHH
Q 008097 154 ICAYCKEENLVNALVLLEKSFSFG---FVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKE 226 (577)
Q Consensus 154 i~~~~~~~~~~~A~~~~~~m~~~g---~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~ 226 (577)
+..+.+.|++++|+.++++.+... +.|+ ..+++.+..+|...|++++|..++++++. +++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~------------i~~~ 361 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME------------PYRI 361 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------HHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH------------hHHH
Confidence 445667899999999999987642 2222 46788899999999999999999876543 3444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008097 227 MERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKI 264 (577)
Q Consensus 227 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 264 (577)
..-...+-...+++.|...|...|++++|+.++++..+
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44332222345788888899999999999998888764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0085 Score=44.60 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 243 ISSYCETGVLDSALDVFNDMKIDGISWNFV-TYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 243 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
...+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|+.....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345566777777777777766542 22445 6666667777777777777777777665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.98 E-value=8.2e-06 Score=77.71 Aligned_cols=261 Identities=11% Similarity=0.070 Sum_probs=132.8
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHH
Q 008097 13 IFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGL 91 (577)
Q Consensus 13 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~ 91 (577)
+|+.|..++.+.|++.+|++.|=+. .|...|..+|.+..+. .+++-+..+. |.+.. ..++..=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~--MaRk~-~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ--MARKK-ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHH--TTSTT-CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHH--HHHHH-hcccccHHHHHHHH
Confidence 4455555555555555554433222 2233344455554444 4554444443 22211 11223334455555
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHH
Q 008097 92 CLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLE 171 (577)
Q Consensus 92 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 171 (577)
++.+++.+-++.+ -.||..-...+.+-+...|.++.|.-+|..+. .|.-|...+++.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544322221 12444444455555555555555555554433 24444445556666666654322
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 008097 172 KSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGV 251 (577)
Q Consensus 172 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 251 (577)
+ .-++.||-.+-.+|...+.+..|...--.++- ...-...++.-|-..|.
T Consensus 195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv------------------------hadeL~elv~~YE~~G~ 244 (624)
T 3lvg_A 195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------------------------HADELEELINYYQDRGY 244 (624)
T ss_dssp T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC------------------------CSSCCSGGGSSSSTTCC
T ss_pred h------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc------------------------cHHHHHHHHHHHHhCCC
Confidence 2 23678899999999999888877654221111 22223445566777788
Q ss_pred hhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCC-------CcccHHHHHHHHHhcCCH
Q 008097 252 LDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKG-------RISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~g~~ 324 (577)
+++-+.+++.-... -+...-+|+-|.-.|++- ++++-.+-++..-.+ -..| ....|.-++..|.+-.++
T Consensus 245 f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sr--iNipKviracE~ahLW~ElvfLY~~ydE~ 320 (624)
T 3lvg_A 245 FEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 320 (624)
T ss_dssp CTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS--SCCTTTHHHHTTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh--ccHHHHHHHHHHHhhHHHHHHHHhcchhH
Confidence 88777777766532 134555666666666654 444444444332221 1111 223467777777777777
Q ss_pred HHHH
Q 008097 325 DEAL 328 (577)
Q Consensus 325 ~~A~ 328 (577)
+.|.
T Consensus 321 DnA~ 324 (624)
T 3lvg_A 321 DNAI 324 (624)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.44 Score=36.93 Aligned_cols=132 Identities=8% Similarity=-0.029 Sum_probs=81.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---hhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---GRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
.|..++..++..+..+.. +..-|+-+|--....-+-+-..++++.+.+. ..||++.....-+-.+-. +.
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~-----~s 91 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT-----LN 91 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC-----CC
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc-----hH
Confidence 345555555555544321 2223333333223333333334444443333 556666655555544332 56
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
......++.....|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6677788888999999999999988644 34778888888999999999999999999888776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.066 Score=39.25 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=8.1
Q ss_pred HHHHHcCCChHHHHHHHHHHH
Q 008097 278 IRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 278 l~~~~~~g~~~~a~~~~~~~~ 298 (577)
...+.+.|++++|+..|+.+.
T Consensus 50 g~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 50 ANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.3 Score=52.32 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 008097 275 DTLIRGLCSGGRIDDGLKIL 294 (577)
Q Consensus 275 ~~ll~~~~~~g~~~~a~~~~ 294 (577)
..++..+.+.|..++|.++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHHHhCCChHHheecC
Confidence 44455555555555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.033 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVV-IYDCLIHAYCQEERVREASELMKEMTGH 405 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 405 (577)
..+.+.|++++|...|++..+.. +.+.. .|..+..+|...|++++|++.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455666666777776666642 22445 6777777777777777777777777753
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.069 Score=47.99 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHH
Q 008097 392 VREASELMKEMTGHGYLPI---ASTFNTVLSGLCR-----QGNVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCE 461 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~ 461 (577)
..+|..++++.++ +.|+ ...|..+...|.. -|+.++|.+.|++.+. +.| +..++....+.+++
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-----LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-----YCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-----HCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHH
Confidence 4566666666666 4465 4456666666766 3788888888886666 667 36777777777777
Q ss_pred c-CChhHHHHHHHHHHHCCCC--CCHHHH
Q 008097 462 K-GGFQSASMLLVQMVGKGIL--PDYLTW 487 (577)
Q Consensus 462 ~-g~~~~A~~~~~~m~~~~~~--p~~~~~ 487 (577)
. |+.++|.+.+++....+.. |+...+
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence 4 7788888888887765555 443333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.73 Score=37.99 Aligned_cols=46 Identities=9% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 008097 281 LCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQM 334 (577)
Q Consensus 281 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 334 (577)
..+.|+++.|.++.+.+ . +...|..|.......|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l--~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--N------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--C------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh--C------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555554433 1 3445555555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.096 Score=42.10 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhcccCCCCCC--CcccHHHHHHHHHHcCChhHH
Q 008097 394 EASELMKEMTGHGYLPIASTFNTVLSGLCRQG---NVGTALKLVEEDMRGIGRGSLP--GSGHYSPLIKALCEKGGFQSA 468 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~m~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 468 (577)
.+.+-|.+....|. ++..+-..+..++.+++ ++++|..+|++.+. . . .| +.+.+-.+.-+|.+.|++++|
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~--~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP--K-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--H-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--c-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 33444444444332 44445445555555555 44456666653333 1 0 13 234444455555666666666
Q ss_pred HHHHHHHHHCCCCCCH
Q 008097 469 SMLLVQMVGKGILPDY 484 (577)
Q Consensus 469 ~~~~~~m~~~~~~p~~ 484 (577)
.+.++.+.+ ++|+.
T Consensus 91 ~~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHh--cCCCC
Confidence 666666663 55654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.088 Score=47.32 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCC---ceehHHHHHHhhhc-----CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-CCHHHH
Q 008097 325 DEALEYLKQMEKLFPR---AVDRSLKILGFCVD-----GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE-ERVREA 395 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A 395 (577)
..|...+++..++.|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......+++. |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 3444445555555554 23445555555552 66666666666666632211355555566666553 666666
Q ss_pred HHHHHHHHhCCCC
Q 008097 396 SELMKEMTGHGYL 408 (577)
Q Consensus 396 ~~~~~~m~~~g~~ 408 (577)
.+.+++.+.....
T Consensus 260 ~~~L~kAL~a~p~ 272 (301)
T 3u64_A 260 DEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHCCGG
T ss_pred HHHHHHHHcCCCC
Confidence 6666666654443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.9 Score=35.22 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHH
Q 008097 284 GGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 284 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 363 (577)
.|.+++..++..+...+. +..-+|.+|--....-+-+-..+.++.+-+.+. ...||++......
T Consensus 20 dG~v~qGveii~k~~~ss-----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD-----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC-----CccccceeeeecchhhchhHHHHHHHHHhhhcC-----------cHhhhcHHHHHHH
Confidence 466777777776666542 333445555444444444544555554433211 1245555554444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+-.+- .+....+..++.+...|+-++-.+++..+.. +.+|++.....+.+||.+.|+..+|.+++.
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44332 2444455555666666666666666666433 235566666666666666666666666665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.99 E-value=0.21 Score=39.58 Aligned_cols=107 Identities=13% Similarity=0.118 Sum_probs=72.3
Q ss_pred CCCHHHHHHHHHHHhccCCh------hHHHHHHHHHhhCCCCCC-HHHHHHHHHHH------Hhc-CHHHHHHHHHHHHh
Q 008097 8 PPDESIFITVIRGLGRARMI------NDVVKATDLVSRFNMTPS-LKIFNSILDVL------VKE-DIDLARAFYRKKMM 73 (577)
Q Consensus 8 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~-~~~~~~li~~~------~~~-~~~~a~~~~~~~m~ 73 (577)
|.|+++|-..+...-+.|++ +..+++|++....- +|+ -..|...|... ... +.++|+++|. .+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~-~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ-MAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHH
Confidence 56888888888888888999 88889999886542 232 22222222221 112 7888888888 565
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcc
Q 008097 74 ASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSV 117 (577)
Q Consensus 74 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 117 (577)
...-. =...|......-.+.|++..|.+++...+..+..|...
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 43222 26666666666678899999999999888887665443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=1.4 Score=36.37 Aligned_cols=101 Identities=10% Similarity=0.079 Sum_probs=69.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNAL 167 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 167 (577)
.......|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|.-.|+.++-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHH
Confidence 34455788888888887765 3677899999999999999999998888764 455555566677776666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 168 VLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 168 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
++-+.....| -++.....+.-.|+++++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 5555444333 2344444555667777777765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.15 E-value=2.9e-05 Score=74.03 Aligned_cols=221 Identities=12% Similarity=0.154 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 008097 47 KIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHS 125 (577)
Q Consensus 47 ~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 125 (577)
..|..+-.+.... ...+|++-|- + .-|+..|..++.++.+.|.+++-.+.+....+. ..++.+=+.|+-+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI----k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI----K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC----C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH----h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 3455555555555 5555554432 1 124445556666666666666655555544443 2234444556666
Q ss_pred HHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 126 LCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
|++.+++.+-.+++ ..||..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++..|.+.
T Consensus 126 yAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVda- 192 (624)
T 3lvg_A 126 LAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDG- 192 (624)
T ss_dssp HHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTT-
T ss_pred HHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHH-
Confidence 66666544432221 12555555555555555555555555444321 122333344445554444332
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC
Q 008097 206 EESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG 285 (577)
Q Consensus 206 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 285 (577)
..+ .-++.||-.+-.+|...+.+.-|.-.--.+.-. || -+..++..|-..|
T Consensus 193 ---------------------ArK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G 243 (624)
T 3lvg_A 193 ---------------------ARK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRG 243 (624)
T ss_dssp ---------------------TTT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTC
T ss_pred ---------------------HHh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCC
Confidence 111 126677777777777777777665554444321 11 1223555677777
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE 321 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 321 (577)
.+++-+.+++.-... .......++-|.-.|++-
T Consensus 244 ~f~ELIsLlEaglgl---ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 244 YFEELITMLEAALGL---ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CCTTSTTTHHHHTTS---TTCCHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHhc
Confidence 777777777765532 122445566666666554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.32 Score=39.07 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE---RVREASELMKEMTGHGYLP--IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~ 429 (577)
..+..+.+-|.+....+. ++..+.-.+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence 456778888888877655 78888888999999988 6679999999999754 35 24455567778899999999
Q ss_pred HHHHHHHhhcccCCCCCCC
Q 008097 430 ALKLVEEDMRGIGRGSLPG 448 (577)
Q Consensus 430 a~~~~~~~m~~~~~~~~p~ 448 (577)
|+++++..++ +.|+
T Consensus 90 A~~y~~~lL~-----ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQ-----TEPQ 103 (152)
T ss_dssp HHHHHHHHHH-----HCTT
T ss_pred HHHHHHHHHh-----cCCC
Confidence 9999996666 6773
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.35 Score=36.13 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKE 401 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~ 401 (577)
|...+...|+++.|...|++
T Consensus 11 lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHH
Confidence 33333333344444333333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.24 Score=37.06 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCC----CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEG----SKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
+..+...+.+.|+++.|...|+...+.... ..+....+..+..++.+.|+++.|...++++.+..|+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 334444455555555555555544432100 0112233444444555555555555555554444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.67 E-value=1.1 Score=35.64 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=44.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 008097 353 VDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI 410 (577)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 410 (577)
..+++++|.++|+.+.+.+-+- ...|.....--.++|+...|.+++.+.+..+-+|.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 3478899999999987763222 77788888888889999999999999988765543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.05 E-value=0.65 Score=33.75 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
+.-+..+-++.+....+.|++....+.+.||.+..++.-|.++|+ .++ ..+.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE-~iK---~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE-VVK---DKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH---HHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHhcCchhhHHHHHH
Confidence 445666667777777888999999999999999999999999998 776 223444556776663
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.09 E-value=9.2 Score=37.27 Aligned_cols=187 Identities=11% Similarity=0.081 Sum_probs=94.8
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCHHHHHHHHHHH----HcC
Q 008097 215 GKVKGGCRFLKEMERK-----GCLPNVDTYNILISSYCETGVLDSALDVFNDMKID-GISWNFVTYDTLIRGL----CSG 284 (577)
Q Consensus 215 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~ 284 (577)
|+++.|.+.+..+.+. ...........++..|...|+++...+.+..+.+. |..+.. ...+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6677777766655542 12223445666777788888888777766655532 332222 22333322 222
Q ss_pred CChHH--HHHHHHHHHhccCCCCCCc-----ccHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCCc-----eehHHHHHH
Q 008097 285 GRIDD--GLKILQLMEDSKEGSKGRI-----SPYNSVLYGLYRENQQDEALEYLKQMEKL--FPRA-----VDRSLKILG 350 (577)
Q Consensus 285 g~~~~--a~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~p~~-----~~~~~l~~~ 350 (577)
...+. -..+.+.+.....+ +.-. .....|...+...|++.+|..++..+... .... ..+...+..
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~-kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTEN-KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSC-CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22222 11122111111101 0000 11245566777777777777777776531 1111 123334556
Q ss_pred hhhcCCHHHHHHHHHHHHHc----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 351 FCVDGNVEDAKRCFDQMIEE----GGVPN--VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
|...+++..|..++.++... ..+|+ ...+..++..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 66777777777777765422 11122 23455666666667777777766666553
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.39 E-value=2.2 Score=32.90 Aligned_cols=16 Identities=38% Similarity=0.368 Sum_probs=7.6
Q ss_pred HHHhcCCHHHHHHHHH
Q 008097 420 GLCRQGNVGTALKLVE 435 (577)
Q Consensus 420 ~~~~~g~~~~a~~~~~ 435 (577)
++.+.|++++|+++++
T Consensus 83 g~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 4444444444444444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.36 E-value=1.7 Score=45.20 Aligned_cols=129 Identities=6% Similarity=-0.033 Sum_probs=73.0
Q ss_pred HHHHHHHHhccCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh-----cCCCC-CH---
Q 008097 14 FITVIRGLGRARM-INDVVKATDLVSRFNMTPSLKIFNSILDVLVKE--DIDLARAFYRKKMMA-----SGVQG-DD--- 81 (577)
Q Consensus 14 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~a~~~~~~~m~~-----~~~~~-~~--- 81 (577)
-..|+..+...|+ ++.|..+|+.+.+.++..+......+|..+.+. .--+|.++..+.+.. ....+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555666 477888888887654322333333334333222 233444444422211 01111 11
Q ss_pred -------hhHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhcc
Q 008097 82 -------YTYAILMKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDME 143 (577)
Q Consensus 82 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 143 (577)
...+.-...|...|+++-|+++-.+....- +.+-.+|-.|...|.+.|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 011112334556788888888888877752 3345678888888888888888888888887
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.98 E-value=1.3 Score=34.06 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH---HHHHHHHHHhccCCCCC--CcccHHHHHHHHHhcCCHHHH
Q 008097 253 DSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDD---GLKILQLMEDSKEGSKG--RISPYNSVLYGLYRENQQDEA 327 (577)
Q Consensus 253 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A 327 (577)
..+.+-|......|. ++..+-..+.-++.++.+... ++.+++.+... + .| .....-.+.-++.+.|++++|
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334444444443332 455555555556666655444 66666665543 1 01 111223344455566666666
Q ss_pred HHHHHHHhhcCCC
Q 008097 328 LEYLKQMEKLFPR 340 (577)
Q Consensus 328 ~~~~~~~~~~~p~ 340 (577)
.+.++.+.+..|+
T Consensus 94 ~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 6666665555553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.62 E-value=1.7 Score=33.58 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 392 VREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
.-+..+-++.+....+.|++....+.+.+|.+..++.-|.++|+ .++ ..+.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE-~vK---~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE-VVK---DKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH---HHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HhcCCchhhHHHHHH
Confidence 33455566677777788999999999999999999999999998 776 234455566777663
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=88.27 E-value=4.9 Score=29.12 Aligned_cols=88 Identities=11% Similarity=0.024 Sum_probs=61.3
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
....++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|.+|-.. +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4567788777777776643 222222234457788999999999999999999999887553 667788888888777
Q ss_pred HhCCCCCCHhhHH
Q 008097 174 FSFGFVPDVVTIT 186 (577)
Q Consensus 174 ~~~g~~~~~~~~~ 186 (577)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6665 44444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.98 E-value=4.6 Score=29.20 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=62.0
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHH
Q 008097 94 TNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKS 173 (577)
Q Consensus 94 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 173 (577)
....++|..+-+.+...|. ...+--.-+..+...|++++|..+.+...-||...|.+|-. .+.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 4567788788777776643 22222223445778899999999999999999999988754 4678888888888788
Q ss_pred HhCCCCCCHhhHH
Q 008097 174 FSFGFVPDVVTIT 186 (577)
Q Consensus 174 ~~~g~~~~~~~~~ 186 (577)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7666 44444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.48 E-value=20 Score=33.02 Aligned_cols=25 Identities=16% Similarity=-0.085 Sum_probs=16.6
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYL 331 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~ 331 (577)
|+..-..+...|.+.+++.+|...|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4455556667777777777776665
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.17 E-value=2.1 Score=44.65 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=23.7
Q ss_pred HhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHH
Q 008097 422 CRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQM 475 (577)
Q Consensus 422 ~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 475 (577)
...|+++-|+.+-++... +.| +-.+|..|..+|...|+++.|+-.++.+
T Consensus 348 l~K~~~elAL~~Ak~AV~-----~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 348 LNRGDYELALGVSNTSTE-----LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hccCcHHHHHHHHHHHHh-----cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 344555555555443333 344 3445555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=2.5 Score=40.46 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---cCCCCCCCcccHH
Q 008097 381 CLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRG---IGRGSLPGSGHYS 453 (577)
Q Consensus 381 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~---~~~~~~p~~~~~~ 453 (577)
.++..+...|++++|+..+..+.... +-+...+..++.++.+.|+..+|++.|+ .... .+.|+.|...+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~-~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYR-RVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHhCCCCCHHHHH
Confidence 34455555566666655555555421 2244455556666666666666655555 3221 1345666555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=13 Score=35.51 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
++..+...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+...
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444331 2233444445555555555555555444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=85.34 E-value=22 Score=32.46 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHH-HHhhhcCChhHHHHH----HHHHHHcCCCCChhhHHHHHHHHHhcCChh-HHHHHHH
Q 008097 187 KVLELLCSVGRVMDAVEILEES-GEQGRLGKVKGGCRF----LKEMERKGCLPNVDTYNILISSYCETGVLD-SALDVFN 260 (577)
Q Consensus 187 ~ll~~~~~~g~~~~a~~~~~~~-~~~~~~g~~~~a~~~----~~~~~~~~~~p~~~~~~~li~~~~~~g~~~-~A~~~~~ 260 (577)
++..=|.+.+++++|.+++..- ....+.|+...|-++ .+...+.+++++......++..+.....-+ .=.++.+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~ 117 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVIT 117 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHH
Confidence 3444555566666666654332 222444555444443 444455677777777777776665543222 1123333
Q ss_pred HHHH----CC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhc---CCHHHHHHHH
Q 008097 261 DMKI----DG--ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRE---NQQDEALEYL 331 (577)
Q Consensus 261 ~m~~----~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~ 331 (577)
.+.+ .| ..-++.....+...|.+.|++.+|+.-|-.-... +...+..++.-+.+. |...++--+.
T Consensus 118 ~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~------s~~~~a~~l~~w~~~~~~~~~~e~dlf~ 191 (312)
T 2wpv_A 118 GMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD------SMIKYVDLLWDWLCQVDDIEDSTVAEFF 191 (312)
T ss_dssp HHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH------HHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc------cHHHHHHHHHHHHHhcCCCCcchHHHHH
Confidence 3332 22 1235566667777777777777777665421110 233344444444333 4443332111
Q ss_pred HHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 332 KQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 332 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
.+ .+-.|.-.|++..|..+|+...+
T Consensus 192 ~R-------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 192 SR-------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 12335556777777777776543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.83 E-value=25 Score=39.10 Aligned_cols=166 Identities=11% Similarity=0.035 Sum_probs=91.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHc
Q 008097 152 ILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQG-RLGKVKGGCRFLKEMERK 230 (577)
Q Consensus 152 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~g~~~~a~~~~~~~~~~ 230 (577)
.++..+.+.+..+-+.++.... +.+...--.+..++...|++++|.++|.++.... ..........-+..+...
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3445556666666665544332 2344443445667788888888888886543221 000000111112222221
Q ss_pred CCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Q 008097 231 GCL--PNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWN----FVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGS 304 (577)
Q Consensus 231 ~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 304 (577)
... .-..-|..++..+-+.+.++.+.++-+...+...+-+ ...|..+.+.+...|++++|...+..+... ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--~~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--PL 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--SS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--HH
Confidence 111 1123466777788888888888877776654321111 124677888888888888888888776643 11
Q ss_pred CCCcccHHHHHHHHHhcCCHHH
Q 008097 305 KGRISPYNSVLYGLYRENQQDE 326 (577)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~ 326 (577)
-......++..++..|..+.
T Consensus 970 --r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 --KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp --CHHHHHHHHHHHHHHCCHHH
T ss_pred --HHHHHHHHHHHHHhCCChhh
Confidence 23445666666666665543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.05 E-value=25 Score=32.07 Aligned_cols=21 Identities=5% Similarity=-0.284 Sum_probs=15.3
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
--|.-.|++..|..+++...+
T Consensus 196 L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 196 FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 345567888888888887653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.61 E-value=34 Score=33.23 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=43.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhccCCCCCC---cccHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCc----eehH
Q 008097 277 LIRGLCSGGRIDDGLKILQLMEDSKEGSKGR---ISPYNSVLYGLYRENQQDEALEYLKQMEK----LFPRA----VDRS 345 (577)
Q Consensus 277 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~p~~----~~~~ 345 (577)
|...|...|++.+|..++..+.....+.... +..+...+..|...+++.+|..++.++.. ..+.+ .-+.
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 4444555555555555555544321111111 12344555555666666666655555432 11111 1123
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 346 LKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
..+..+...+++.+|.+.|.++..
T Consensus 223 ~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 223 LLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344455566666666666666644
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.58 E-value=30 Score=31.86 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=15.1
Q ss_pred HHHHHcCChhHHHHHHHHHHH
Q 008097 457 KALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~m~~ 477 (577)
--|.-.|++..|..+++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 346667888888887776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.47 E-value=56 Score=34.96 Aligned_cols=260 Identities=10% Similarity=0.029 Sum_probs=137.5
Q ss_pred hhcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CcCHHHHHHHHHHHH
Q 008097 212 GRLGKVKGGCRFLKEMERKG--CLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGI-------SWNFVTYDTLIRGLC 282 (577)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~ll~~~~ 282 (577)
...|+.++++.+++.....+ -.+....-..+.-+....|..+++..++.......- .+....-..+.-+.+
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 35567777777666554321 111122333344455666766678887777654311 011122222323333
Q ss_pred cCCC-hHHHHHHHHHHHhccCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCcee-hHHHHHHhhhcCC
Q 008097 283 SGGR-IDDGLKILQLMEDSKEGSKGRIS----PYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVD-RSLKILGFCVDGN 356 (577)
Q Consensus 283 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~ 356 (577)
-.|. -+++.+.+..+...+ +.. .--+|...+.-.|+.+-...++..+.+...+.+. ...+.-++...|+
T Consensus 465 ~~GS~~eev~e~L~~~L~dd-----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYND-----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hcCCCCHHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 3332 235555555555431 111 1113333455667777777777776654333222 2223334557788
Q ss_pred HHHHHHHHHHHHHcCCCCCHh-hHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008097 357 VEDAKRCFDQMIEEGGVPNVV-IYD---CLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALK 432 (577)
Q Consensus 357 ~~~A~~~~~~~~~~~~~p~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 432 (577)
.+.+..+.+.+... .+.. -|. ++.-+|+-.|+.....++++.+.... ..+..-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888763 2322 233 33445667778766666888888642 2233223333334445677777777
Q ss_pred HHHHhhcccCCCCCCCcccHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHH
Q 008097 433 LVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGF-QSASMLLVQMVGKGILPDYLTW 487 (577)
Q Consensus 433 ~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~ 487 (577)
+++ .+. .+ ..|....-.++.-+...+|.. .+|.+++..+. -.+|..+=
T Consensus 616 lv~-~L~--~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~---~D~d~~Vr 664 (963)
T 4ady_A 616 IVQ-LLS--KS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT---KDPVDFVR 664 (963)
T ss_dssp HTT-TGG--GC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---TCSSHHHH
T ss_pred HHH-HHH--hc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---cCCCHHHH
Confidence 777 555 22 245444444454455555654 67888999987 34565443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.51 E-value=4 Score=33.09 Aligned_cols=61 Identities=3% Similarity=-0.113 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC-CCCcCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008097 239 YNILISSYCETGVLDSALDVFNDMKID-GISWNF-------VTYDTLIRGLCSGGRIDDGLKILQLMED 299 (577)
Q Consensus 239 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 299 (577)
+-.-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 334466677778888887776664432 112331 2456667778888888888888887643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.47 E-value=37 Score=37.71 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=48.0
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNV----VIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLS 419 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 419 (577)
|..++..|.+.+.++.+.++-...++...+.+. ..|..+..++...|++++|...+-.+.+...+ ...+..++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 344555566667777777666665554211111 25777777778888888888777777654433 234555555
Q ss_pred HHHhcCCH
Q 008097 420 GLCRQGNV 427 (577)
Q Consensus 420 ~~~~~g~~ 427 (577)
.++..|..
T Consensus 980 ~lce~~~~ 987 (1139)
T 4fhn_B 980 QLTKQGKI 987 (1139)
T ss_dssp HHHHHCCH
T ss_pred HHHhCCCh
Confidence 55544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 577 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.003
Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 226 EMERKGCLPNVDTYNILISSYCETGVLDSALDVFND-MKIDGISWNFVTYDTLIRGLCSG 284
+ + L Y E G++D A+D + +++ Y L L
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEK 284
Query: 285 GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDR 344
G + + + N++ + +EA+ ++ ++FP
Sbjct: 285 GSVA---EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA- 340
Query: 345 SLKILGFCVD--GNVEDAKRCFDQMIE 369
+ L + G +++A + + I
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 577 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.94 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.93 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.8 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.32 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.32 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.09 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.76 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.69 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.53 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.48 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.36 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.18 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.05 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.99 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.4 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.59 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 92.84 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.79 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.45 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.67 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.76 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.7e-20 Score=180.07 Aligned_cols=377 Identities=15% Similarity=0.071 Sum_probs=257.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~ 164 (577)
...+.+.|++++|.+.++++.+.. +-+...+..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344556777777777777777653 22456677777777777777777777777653 2 3456777777777888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+|+..+......... +..............+....+.... ....... ............
T Consensus 85 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~ 143 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAY-------------------VSALQYN-PDLYCVRSDLGN 143 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHH-------------------HHHHHHC-TTCTHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccc-------------------ccccccc-cccccccccccc
Confidence 888887777665422 2333333333333333333333222 1111111 123444455555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.....+....+...+....... +.+...+..+...+...|++++|...++.....++. +...|..+...+...|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~ 219 (388)
T d1w3ba_ 144 LLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCT
T ss_pred cccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc---cHHHHHHHhhhhhccccH
Confidence 6666777777777777666542 335566777777788888888888888877765332 556677777888888888
Q ss_pred HHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|...+.+.....|. ...+..+...|.+.|++++|...|++..+.. +.+..+|..+...|...|++++|++.++...
T Consensus 220 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 8888888887775544 3445666777888888888888888887752 2356778888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 404 GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 404 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
... +.+...+..+...+...|++++|...|++.+. +.| +...|..+..+|.+.|++++|.+.+++..+ +.|
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P 370 (388)
T d1w3ba_ 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISP 370 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT-----SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCT
T ss_pred ccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 642 44666777888888888888888888885555 456 566788888888888888888888888884 566
Q ss_pred C-HHHHHHHHHHHHhcch
Q 008097 483 D-YLTWNSLLICLSQQTT 499 (577)
Q Consensus 483 ~-~~~~~~ll~~~~~~~~ 499 (577)
+ ...|..|-.++.+.||
T Consensus 371 ~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 5 5678888777766554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-19 Score=175.17 Aligned_cols=348 Identities=13% Similarity=0.093 Sum_probs=277.2
Q ss_pred HHHHHHhcCCHhHHHHHHHhccC--C-CceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 008097 122 LIHSLCKNGKVGRARSLMSDMEE--P-NDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRV 198 (577)
Q Consensus 122 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 198 (577)
+...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+.. +-+..++..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 45667889999999999999864 4 46688889999999999999999999998764 23567888899999999999
Q ss_pred hHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008097 199 MDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLI 278 (577)
Q Consensus 199 ~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 278 (577)
++|...+..+. ... +.+...+..........+....+........... ...........
T Consensus 84 ~~A~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (388)
T d1w3ba_ 84 QEAIEHYRHAL-------------------RLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp HHHHHHHHHHH-------------------HHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred ccccccccccc-------------------ccc-cccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 88888765433 221 1244445555555666677777776666665543 33445555666
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCH
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNV 357 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 357 (577)
......+....+...+.......+ .+...+..+...+...|++++|...+++..+..|+. ..+..+...+...|++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 219 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQP---NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred ccccccchhhhhHHHHHHhhccCc---chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccH
Confidence 667788889999988888877532 256678888899999999999999999999887765 4577788899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
++|...|++..... +.+...+..+...|.+.|++++|++.|++..+. .| +..++..+...+...|++++|...+++
T Consensus 220 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999998863 346778888999999999999999999999874 46 466788999999999999999999995
Q ss_pred hhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcchHHHH
Q 008097 437 DMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD-YLTWNSLLICLSQQTTWLLL 503 (577)
Q Consensus 437 ~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~ 503 (577)
.+. ..+.+...+..+..++...|++++|.+.+++..+ +.|+ ..+|..+-.++...|+.+.+
T Consensus 297 ~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 297 ALR----LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred hhc----cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 554 1233778899999999999999999999999974 5565 57788898999999987654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-12 Score=123.14 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=175.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHh
Q 008097 241 ILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYR 320 (577)
Q Consensus 241 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 320 (577)
.....+.+.|++++|+..|+++.+.. +-+..+|..+..+|...|++++|...|.+..+..+. +...|..+...|..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---cccccccccccccc
Confidence 44556778888888888888888763 335677888888888888888888888888776332 56677778888888
Q ss_pred cCCHHHHHHHHHHHhhcCCCceeh----------------HHHHHHhhhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRAVDR----------------SLKILGFCVDGNVEDAKRCFDQMIEEGG-VPNVVIYDCLI 383 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~~~~----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li 383 (577)
.|++++|.+.+..+....|+.... ...+..+...+...+|...|.+...... .++...|..+.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 888888888888887765542211 0112233455677888999988877532 23567788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHH
Q 008097 384 HAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCE 461 (577)
Q Consensus 384 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~ 461 (577)
..+...|++++|+..|++.... .| +...|..+...+...|++++|.+.|++.+. +.| +...|..+..+|.+
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~lg~~~~~ 252 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE-----LQPGYIRSRYNLGISCIN 252 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHH-----HhhccHHHHHHHHHHHHH
Confidence 9999999999999999999874 35 466788899999999999999999996666 456 67789999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 008097 462 KGGFQSASMLLVQMVG 477 (577)
Q Consensus 462 ~g~~~~A~~~~~~m~~ 477 (577)
.|++++|.+.+++..+
T Consensus 253 ~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 253 LGAHREAVEHFLEALN 268 (323)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.5e-12 Score=120.77 Aligned_cols=247 Identities=13% Similarity=0.082 Sum_probs=182.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 008097 213 RLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLK 292 (577)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 292 (577)
+.|++++|...|+...+..+. +..+|..+...|...|++++|...|.+..+.. +-+...+..+...|...|++++|.+
T Consensus 31 ~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~ 108 (323)
T d1fcha_ 31 QEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACE 108 (323)
T ss_dssp HTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccccc
Confidence 334555555556666665332 67789999999999999999999999988763 3467788889999999999999999
Q ss_pred HHHHHHhccCCCCC------------CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc---eehHHHHHHhhhcCCH
Q 008097 293 ILQLMEDSKEGSKG------------RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA---VDRSLKILGFCVDGNV 357 (577)
Q Consensus 293 ~~~~~~~~~~~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 357 (577)
.++......+.... +.......+..+...+...+|...|.+..+..|+. ..+..+...+...|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 188 (323)
T d1fcha_ 109 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 188 (323)
T ss_dssp HHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH
T ss_pred chhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 99998765322100 00011122233445567888999999888876654 3456677788999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 358 EDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 358 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
++|...|++..... +.+...|..+...|...|++++|++.|++.++. .| +...+..+..+|.+.|++++|+..|++
T Consensus 189 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 189 DKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998863 335788999999999999999999999999874 46 466788999999999999999999996
Q ss_pred hhcccCCCCCCC------------cccHHHHHHHHHHcCChhHHH
Q 008097 437 DMRGIGRGSLPG------------SGHYSPLIKALCEKGGFQSAS 469 (577)
Q Consensus 437 ~m~~~~~~~~p~------------~~~~~~li~~~~~~g~~~~A~ 469 (577)
.+. +.|+ ...|..+-.++...|+.+.+.
T Consensus 266 al~-----l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 266 ALN-----MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHH-----HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHH-----hCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 665 2332 123455555666666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=5.8e-08 Score=91.29 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=158.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHc
Q 008097 155 CAYCKEENLVNALVLLEKSFSFGFVPD----VVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERK 230 (577)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 230 (577)
..+...|++++|++++++........+ ...+..+...+...|++++|...++.+... ....
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~---------------~~~~ 84 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM---------------ARQH 84 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------HHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHhh
Confidence 445566777777777777665432211 134555566677777777777776554332 1111
Q ss_pred CCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCc---CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC
Q 008097 231 GCLP-NVDTYNILISSYCETGVLDSALDVFNDMKID----GISW---NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKE 302 (577)
Q Consensus 231 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 302 (577)
+..+ ....+..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+...+........
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 164 (366)
T d1hz4a_ 85 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 164 (366)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhh
Confidence 1000 1233455566677788888888777765431 1111 123445566677788888888888877765422
Q ss_pred CCCC--CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---C-----ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCC
Q 008097 303 GSKG--RISPYNSVLYGLYRENQQDEALEYLKQMEKLFP---R-----AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGG 372 (577)
Q Consensus 303 ~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p---~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 372 (577)
...+ ....+......+...+...++...+.+.....+ . ...+......+...|+.+.|...+.+......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 244 (366)
T d1hz4a_ 165 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 244 (366)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 2111 122344455566677788887777766654211 1 11233344556677888888877777655422
Q ss_pred CCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 373 VPN---VVIYDCLIHAYCQEERVREASELMKEMTG----HGYLPIA-STFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 373 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..+ ...+..+...|...|++++|...+++... .+..|+. .++..+...+.+.|++++|.+.+++.+.
T Consensus 245 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 245 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 211 23455567778888888888888877652 3444433 3566677777888888888888775443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=8.7e-09 Score=95.27 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 008097 238 TYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG-RIDDGLKILQLMEDSKEGSKGRISPYNSVLY 316 (577)
Q Consensus 238 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 316 (577)
.++.+-..+.+.+.+++|+.+++++++.. |-+...|+....++...| ++++|...++.+.+.++. +..+|..+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~---~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh---hhhHHHHHhH
Confidence 44555556667777788888887777653 334556666666666655 477777777777765333 5666777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCC-ceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPR-AVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER---- 391 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 391 (577)
.+.+.|++++|++.+.++.+..|+ ...|..+...+.+.|++++|...|+++++.+ +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 777777777777777777776554 4556666666667777777777777776642 2245566665555554443
Q ss_pred --HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 392 --VREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 392 --~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+++|++.+.+.++. .| |...|..+...+... ..+++...++
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~ 243 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHH
Confidence 45666666666653 34 344455444444333 3455555555
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.7e-08 Score=91.72 Aligned_cols=186 Identities=9% Similarity=-0.012 Sum_probs=116.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCce--ehHHHHHHhhhcCCHHHHHHH
Q 008097 286 RIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAV--DRSLKILGFCVDGNVEDAKRC 363 (577)
Q Consensus 286 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~ 363 (577)
..++|..+|++..+. ..+.+...|...+....+.|+.+.|..+|+++.+..|... .|...+....+.|+++.|.++
T Consensus 79 ~~~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 346667777776653 2233445566666777777777777777777776655432 456666666677777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccC
Q 008097 364 FDQMIEEGGVPNVVIYDCLIHA-YCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIG 442 (577)
Q Consensus 364 ~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~ 442 (577)
|+++.+... .+...|...... +...|+.+.|..+|+.+.+. .+-+...|...+..+...|++++|+.+|++.+. .
T Consensus 157 ~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~--~ 232 (308)
T d2onda1 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT--S 232 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--S
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--h
Confidence 777766422 233334333332 23356777777777777764 223455677777777777788888777775555 3
Q ss_pred CCCCCC--cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 443 RGSLPG--SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 443 ~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
....|. ...|...+..-...|+.+.+.++.+++.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333332 34577777777777888777777777754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3e-08 Score=91.51 Aligned_cols=195 Identities=11% Similarity=0.092 Sum_probs=115.7
Q ss_pred eHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 008097 149 TFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVG-RVMDAVEILEESGEQGRLGKVKGGCRFLKEM 227 (577)
Q Consensus 149 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~ 227 (577)
.|+.+-..+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|...++. .
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~-------------------a 104 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITA-------------------I 104 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHH-------------------H
Confidence 34555556667777777777777777643 223455666666666554 35666555433 3
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC
Q 008097 228 ERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR 307 (577)
Q Consensus 228 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 307 (577)
.+.... +..+|+.+...+.+.|++++|+..++++.+.. +.+...|..+...+.+.|++++|.+.++.+.+.++. +
T Consensus 105 l~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~---n 179 (315)
T d2h6fa1 105 IEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR---N 179 (315)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---C
T ss_pred HHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc---c
Confidence 332222 56677777777777888888888888777653 346777777777777778888888888877776322 5
Q ss_pred cccHHHHHHHHHhcCC------HHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 308 ISPYNSVLYGLYRENQ------QDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 308 ~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
...|+.+...+.+.+. +++|++.+.++.+..|+. ..|..+...+. ....+++...++...+
T Consensus 180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 5566665555544443 455666666655555533 22333332222 2234555555555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=4.2e-08 Score=92.29 Aligned_cols=209 Identities=14% Similarity=0.033 Sum_probs=140.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 008097 184 TITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMK 263 (577)
Q Consensus 184 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 263 (577)
++..+...+...|++..+...+...... ...............+..+...+...|+++.+...+....
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~ 160 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQL------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 160 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3444556667777777777776554322 1111111000012345556678889999999999998877
Q ss_pred HCC----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008097 264 IDG----ISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGR----ISPYNSVLYGLYRENQQDEALEYLKQME 335 (577)
Q Consensus 264 ~~g----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 335 (577)
... ......++......+...++...+...+............. ...+..+...+...|++++|...+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 542 22234455666677888899999988887765532221111 1235556677888999999999999887
Q ss_pred hcCCCce-----ehHHHHHHhhhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008097 336 KLFPRAV-----DRSLKILGFCVDGNVEDAKRCFDQMIEE----GGVPN-VVIYDCLIHAYCQEERVREASELMKEMTG 404 (577)
Q Consensus 336 ~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 404 (577)
...|... .+..+...|...|++++|...+++.... +..|+ ..++..+...|.+.|++++|.+.+++..+
T Consensus 241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7544322 2345677899999999999999988643 33333 45788888999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.95 E-value=9.5e-08 Score=87.99 Aligned_cols=187 Identities=11% Similarity=0.014 Sum_probs=146.3
Q ss_pred CChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHH
Q 008097 250 GVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALE 329 (577)
Q Consensus 250 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (577)
+..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+... ........|...+..+.+.|+.+.|.+
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 345788999999887655566777888888899999999999999998865 222223468899999999999999999
Q ss_pred HHHHHhhcCCCcee-hHHHHHH-hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 008097 330 YLKQMEKLFPRAVD-RSLKILG-FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHG- 406 (577)
Q Consensus 330 ~~~~~~~~~p~~~~-~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 406 (577)
+|.++.+..|.... |...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+.++|..+|++.++..
T Consensus 156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99999987775443 3333322 34468999999999999986 44567899999999999999999999999988643
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 407 YLPI--ASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 407 ~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
..|+ ...|...+.--...|+.+.+..++++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3443 34677777777788999999999984444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=2.7e-08 Score=89.22 Aligned_cols=223 Identities=12% Similarity=-0.057 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHCCC-Cc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 008097 252 LDSALDVFNDMKIDGI-SW--NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEAL 328 (577)
Q Consensus 252 ~~~A~~~~~~m~~~g~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (577)
.+.++.-+++...... .+ ...+|..+...|.+.|++++|.+.|++....+|. +..+|+.+..++.+.|++++|+
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHhhhchHHHHHHHHHHhh
Confidence 3445555555554311 11 2235555666777777777777777777766433 5666777777777777777777
Q ss_pred HHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008097 329 EYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGY 407 (577)
Q Consensus 329 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 407 (577)
..|+++.+..|+. ..+..+...|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+........
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 7777777766653 345666677777788888888888777652 2234444444445555565555555555555432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 008097 408 LPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDY 484 (577)
Q Consensus 408 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 484 (577)
++...+. ++..+.................. ......| ....|..+...|...|++++|.+.+++..+ ..|+.
T Consensus 170 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 170 -KEQWGWN-IVEFYLGNISEQTLMERLKADAT-DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp -CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred -hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHH-HhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 2211121 11122111111111111110111 0111223 234567788888888999999999988873 55664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=1.2e-09 Score=102.42 Aligned_cols=256 Identities=11% Similarity=0.000 Sum_probs=144.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHh-hHHHH---HHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCC
Q 008097 159 KEENLVNALVLLEKSFSFGFVPDVV-TITKV---LELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLP 234 (577)
Q Consensus 159 ~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 234 (577)
+.+..++|++++++.... .|+.. .|+.. +..+...+...... |.+++|+..++......++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~------------~~~~~al~~~~~~l~~~pk- 105 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESA------------ALVKAELGFLESCLRVNPK- 105 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHH------------HHHHHHHHHHHHHHHHCTT-
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHH------------HHHHHHHHHHHHHHHhCCC-
Confidence 334457888888887764 44433 33332 23333333332222 3344455566666665332
Q ss_pred ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 235 NVDTYNILISSYCETGV--LDSALDVFNDMKIDGISWNFVTYD-TLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+...|..+..++...++ +++|+..+.++.... +++...+. .....+...+..++|...++.+...++. +...|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~---~~~a~ 181 (334)
T d1dcea1 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS---NYSSW 181 (334)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC---CHHHH
T ss_pred cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC---CHHHH
Confidence 56677777666666554 678888888887653 33445443 3445666778888888888877776332 66677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008097 312 NSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEER 391 (577)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 391 (577)
+.+...+.+.|++++|...+....+..|.. ......+...+..+++...+...... .+++...+..++..+...|+
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~ 257 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKE---LELVQNAFFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQS 257 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhHHHH---HHHHHHHHHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhh
Confidence 777777777777776655444433322221 11222233445555566666655553 22344455555555566666
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 392 VREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 392 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.++|...+.+.... .| +..++..+...+...|+.++|.+++++.+.
T Consensus 258 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 258 ELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666665542 23 233455555666666666666666664444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.80 E-value=2.8e-07 Score=82.25 Aligned_cols=65 Identities=17% Similarity=0.061 Sum_probs=35.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 235 NVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 235 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
+..+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..+|...|++++|...|+...+.
T Consensus 70 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 70 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34555555555555666666666665555432 223444555555555555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=1.2e-08 Score=95.42 Aligned_cols=231 Identities=7% Similarity=-0.111 Sum_probs=166.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCCCCcccHH-HHHHHHHhcCCH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGG--RIDDGLKILQLMEDSKEGSKGRISPYN-SVLYGLYRENQQ 324 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~ 324 (577)
..|.+++|+..++...+.. +.+...|..+..++...+ +.++|...+..+...++. +...+. .....+...+.+
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER---NFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch---hhhhhhhHHHHHHHhcccc
Confidence 3455788999999988763 446667777776666665 478999999998876322 444554 344677778999
Q ss_pred HHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008097 325 DEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMT 403 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 403 (577)
++|+..++.+.+..|+. ..|..+...+.+.|++++|...+...... .|+ .......+...+..+++...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999887754 55777788888888888877666555442 121 1223344556677788888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 008097 404 GHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILP 482 (577)
Q Consensus 404 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 482 (577)
... +++...+..+...+...|+.++|...+.+... ..| +...|..+..+|.+.|++++|.+.+++..+ +.|
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP 307 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP-----ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDP 307 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCG
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCc
Confidence 643 23444566667777788999999999985554 456 677889999999999999999999999985 567
Q ss_pred C-HHHHHHHHHHHH
Q 008097 483 D-YLTWNSLLICLS 495 (577)
Q Consensus 483 ~-~~~~~~ll~~~~ 495 (577)
+ ...|+.|-..+.
T Consensus 308 ~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 308 MRAAYLDDLRSKFL 321 (334)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 5 355666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=3.9e-06 Score=70.53 Aligned_cols=126 Identities=12% Similarity=0.039 Sum_probs=90.5
Q ss_pred HhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 008097 350 GFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVG 428 (577)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~ 428 (577)
.+...|+++.|++.|+++ .+|+..+|..+..+|...|++++|++.|++.++. .| +...|..+..+|.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHH
Confidence 345677788888877764 2467778888888888888888888888888874 35 4556778888888888888
Q ss_pred HHHHHHHHhhcccC---------CCCC--C-CcccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 008097 429 TALKLVEEDMRGIG---------RGSL--P-GSGHYSPLIKALCEKGGFQSASMLLVQMVGKGILPD 483 (577)
Q Consensus 429 ~a~~~~~~~m~~~~---------~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 483 (577)
+|...|++.+.... .+.. + ...++..+..++.+.|++++|.+.+++..+ +.|+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~--~~~~ 152 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSE 152 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCS
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCC
Confidence 88888886554100 0000 1 124566778889999999999999998874 4444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=5.8e-06 Score=69.43 Aligned_cols=86 Identities=13% Similarity=0.003 Sum_probs=59.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCC
Q 008097 244 SSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQ 323 (577)
Q Consensus 244 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 323 (577)
..+...|+++.|++.|.++. +|+..+|..+...|...|++++|.+.|++..+.++. +...|..+..++.+.|+
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~---~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh---hhhhHHHHHHHHHhhcc
Confidence 34566777777777776542 556667777777777777777777777777766333 55667777777777777
Q ss_pred HHHHHHHHHHHhh
Q 008097 324 QDEALEYLKQMEK 336 (577)
Q Consensus 324 ~~~A~~~~~~~~~ 336 (577)
+++|++.|++...
T Consensus 86 ~~~A~~~~~kAl~ 98 (192)
T d1hh8a_ 86 YDLAIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=5.9e-06 Score=63.00 Aligned_cols=84 Identities=20% Similarity=0.204 Sum_probs=38.7
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 430 (577)
+.+.|++++|+..|++.++. .+.+...|..+..+|...|++++|+..+.+.++.+ +.+...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHH
Confidence 33444444444444444443 12234445555555555555555555555554421 12333444444455555555555
Q ss_pred HHHHHH
Q 008097 431 LKLVEE 436 (577)
Q Consensus 431 ~~~~~~ 436 (577)
+..|++
T Consensus 91 ~~~~~~ 96 (117)
T d1elwa_ 91 KRTYEE 96 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=1.2e-05 Score=72.69 Aligned_cols=128 Identities=14% Similarity=-0.012 Sum_probs=63.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCC---CCcccHHH
Q 008097 242 LISSYCETGVLDSALDVFNDMKID----GISW-NFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSK---GRISPYNS 313 (577)
Q Consensus 242 li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~ 313 (577)
....|...|++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|.+.++.......... ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 344566777777777777766542 1111 134566677777777777777777776543210000 00122333
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHhhcC---CC----ceehHHHHHHhhhcCCHHHHHHHHHHHHH
Q 008097 314 VLYGLY-RENQQDEALEYLKQMEKLF---PR----AVDRSLKILGFCVDGNVEDAKRCFDQMIE 369 (577)
Q Consensus 314 li~~~~-~~g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (577)
+...|. ..|++++|.+.+.+..+.. .+ ..++..+...|.+.|++++|...|+++..
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 333442 2356666666555554321 11 11123334444455555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.32 E-value=4e-05 Score=69.13 Aligned_cols=183 Identities=14% Similarity=0.010 Sum_probs=115.1
Q ss_pred CHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHhHHHHHH
Q 008097 131 KVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSF----GFVPD-VVTITKVLELLCSVGRVMDAVEIL 205 (577)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~ 205 (577)
++++|.++|.+. ...|...+++++|.+.|.+.... +-.++ ..+|..+..+|.+.|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~a-----------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 456666665543 45677777888888877776542 21122 357778888888999999999888
Q ss_pred HHHHHh-hhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHHC----CCCc-CHHHHHHHH
Q 008097 206 EESGEQ-GRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYC-ETGVLDSALDVFNDMKID----GISW-NFVTYDTLI 278 (577)
Q Consensus 206 ~~~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~ll 278 (577)
+.+... ...|.... ...++..+...|. ..|++++|+..|++..+. +.++ -..++..+.
T Consensus 101 ~~a~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la 165 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (290)
T ss_dssp HHHHHHHHHTTCHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhHHhhhcccchh---------------HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence 776543 11112111 1334555555664 469999999999887542 2222 134567788
Q ss_pred HHHHcCCChHHHHHHHHHHHhccCCCCCCcc----cHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 279 RGLCSGGRIDDGLKILQLMEDSKEGSKGRIS----PYNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
..|...|++++|...|+.+....+....... .+...+..+...|+++.|...+++..+..|
T Consensus 166 ~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8899999999999999988765322211111 123344456667788888877777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.28 E-value=0.0013 Score=59.36 Aligned_cols=283 Identities=15% Similarity=0.085 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCCCHhhHHHH
Q 008097 9 PDESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVKE-DIDLARAFYRKKMMASGVQGDDYTYAIL 87 (577)
Q Consensus 9 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~a~~~~~~~m~~~~~~~~~~~~~~l 87 (577)
||..-...+...|.+.|.++.|..+|..+.. |..++..+.+. ++..|.+++.+ . -+..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k-~------~~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK-A------NSTRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH-H------TCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH-c------CCHHHHHHH
Confidence 3444455677778888888888888887743 66777777777 88888887762 2 256678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCHhHHHHHHHhccC---CCceeHHHHHHHHHhcCChH
Q 008097 88 MKGLCLTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCKNGKVGRARSLMSDMEE---PNDVTFSILICAYCKEENLV 164 (577)
Q Consensus 88 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 164 (577)
..+|.+......+ .+.......+......++..|-..|.+++...+++.... .+...++.++..|++.+ .+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hH
Confidence 8888776665443 222333333445556777888888888888888876532 34445677777777653 33
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 008097 165 NALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILIS 244 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 244 (577)
+..+.++... +..-...++..|-+.+. |.-++-
T Consensus 150 kl~e~l~~~s------~~y~~~k~~~~c~~~~l-----------------------------------------~~elv~ 182 (336)
T d1b89a_ 150 KMREHLELFW------SRVNIPKVLRAAEQAHL-----------------------------------------WAELVF 182 (336)
T ss_dssp HHHHHHHHHS------TTSCHHHHHHHHHTTTC-----------------------------------------HHHHHH
T ss_pred HHHHHHHhcc------ccCCHHHHHHHHHHcCC-----------------------------------------hHHHHH
Confidence 3333333221 11112223344433333 444555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCH
Q 008097 245 SYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQ 324 (577)
Q Consensus 245 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 324 (577)
.|.+.|+++.|..+.-. . +++..-....+..+.+..+.+...++.....+. ++...+.++......-+.
T Consensus 183 Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~------~p~~i~~lL~~v~~~~d~ 251 (336)
T d1b89a_ 183 LYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF------KPLLLNDLLMVLSPRLDH 251 (336)
T ss_dssp HHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH------CGGGHHHHHHHHGGGCCH
T ss_pred HHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc------CHHHHHHHHHHhccCCCH
Confidence 56666666666544322 1 233333444455556666666555555544443 233445555555555555
Q ss_pred HHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008097 325 DEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVRE 394 (577)
Q Consensus 325 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (577)
.+..+.++ +.+++.-....++.....+ +....+++...|...++++.
T Consensus 252 ~r~V~~~~--------------------k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 252 TRAVNYFS--------------------KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHH--------------------HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHH--------------------hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence 55544443 3455555666666655533 44677888888888888654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=2.7e-06 Score=72.33 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=51.8
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 008097 348 ILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGN 426 (577)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 426 (577)
...|.+.|++++|+..|++.+... +.+...|+.+..+|.+.|++++|+..|++.++ +.| +...|..+..+|.+.|+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCC
Confidence 344555555555555555555542 23455666666666666666666666666665 345 34456666666666666
Q ss_pred HHHHHHHHHHhhc
Q 008097 427 VGTALKLVEEDMR 439 (577)
Q Consensus 427 ~~~a~~~~~~~m~ 439 (577)
+++|...|++.+.
T Consensus 88 ~~~A~~~~~~al~ 100 (201)
T d2c2la1 88 YDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666664443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=7.2e-06 Score=69.52 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=86.2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-Cccc
Q 008097 374 PNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGH 451 (577)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~ 451 (577)
|+...+......|.+.|++++|+..|++.++. .| +...|..+..+|.+.|++++|+..|++.+. +.| +...
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~-----l~p~~~~a 74 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE-----LDGQSVKA 74 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----SCTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH-----hCCCcHHH
Confidence 67777888899999999999999999999874 35 667799999999999999999999997666 678 6778
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 452 YSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 452 ~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
|..+..+|.+.|++++|...+++..+
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999998874
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.3e-05 Score=60.95 Aligned_cols=97 Identities=16% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008097 315 LYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVR 393 (577)
Q Consensus 315 i~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (577)
...+.+.|++++|+..|.+..+..|+. ..|..+..+|.+.|++++|+..|++.++.+ +.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 455677788888888888877766654 446777777888888888888888888763 357788888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH
Q 008097 394 EASELMKEMTGHGYLPIASTF 414 (577)
Q Consensus 394 ~A~~~~~~m~~~g~~p~~~~~ 414 (577)
+|+..|++.++ ..|+...+
T Consensus 89 ~A~~~~~~a~~--~~p~~~~~ 107 (117)
T d1elwa_ 89 EAKRTYEEGLK--HEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHT--TCTTCHHH
T ss_pred HHHHHHHHHHH--hCCCCHHH
Confidence 99999999887 45654443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.1e-05 Score=63.72 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=36.3
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 429 (577)
|.+.|++++|...|++.++.. +.+...|..+..+|...|++++|++.|++.++. .| +...|..+..++...|++++
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444431 123444444444444444444444444444442 23 22344444444444444444
Q ss_pred HHHHHH
Q 008097 430 ALKLVE 435 (577)
Q Consensus 430 a~~~~~ 435 (577)
|...++
T Consensus 97 A~~~~~ 102 (159)
T d1a17a_ 97 ALRDYE 102 (159)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.15 E-value=0.00092 Score=58.80 Aligned_cols=225 Identities=11% Similarity=-0.086 Sum_probs=150.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHhccCCCCCCcccH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCS----GGRIDDGLKILQLMEDSKEGSKGRISPY 311 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 311 (577)
+..+..|-..+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|...+...... + +....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~---~~~a~ 73 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N---YSNGC 73 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T---CHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--c---ccchh
Confidence 3455666666777888999999998888765 45556566666665 45788888888877665 2 33444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHhhcCCCceehHHHHHH----hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008097 312 NSVLYGLYR----ENQQDEALEYLKQMEKLFPRAVDRSLKILG----FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLI 383 (577)
Q Consensus 312 ~~li~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 383 (577)
..+...+.. ..+.+.|...++...+..+....+. +... .........+...+...... .+...+..+.
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 444444433 4677888888887766543322222 2122 22345677777777777663 5677888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhcccCCCCCCCcccHHHH
Q 008097 384 HAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTALKLVEEDMRGIGRGSLPGSGHYSPL 455 (577)
Q Consensus 384 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~l 455 (577)
..|.. ..+...+...++...+.| +......+...+.. ..+.++|..+|++... .| ++..+..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~---~g---~~~a~~~L 220 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE---LE---NGGGCFNL 220 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH---TT---CHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhc---cc---CHHHHHHH
Confidence 88875 456778888888887765 45555555555554 5689999999995544 22 45667778
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHCCCC
Q 008097 456 IKALCE----KGGFQSASMLLVQMVGKGIL 481 (577)
Q Consensus 456 i~~~~~----~g~~~~A~~~~~~m~~~~~~ 481 (577)
..+|.+ ..+.++|.+.+++..+.|.+
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 877765 34788999999999877744
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.09 E-value=8.7e-06 Score=61.43 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-CcccHHHHHHHH
Q 008097 382 LIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-GSGHYSPLIKAL 459 (577)
Q Consensus 382 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~~~~~~~li~~~ 459 (577)
+...+.+.|++++|+..|++.++. .| +...|..+..++.+.|++++|...|++.+. +.| +...|..+...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM-----LDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc-----cccccccchHHHHHHH
Confidence 344455556666666666665542 24 344555555555666666666666654444 344 455555566666
Q ss_pred HHcCChhHHHHHHHHH
Q 008097 460 CEKGGFQSASMLLVQM 475 (577)
Q Consensus 460 ~~~g~~~~A~~~~~~m 475 (577)
...|++++|.+.+++.
T Consensus 95 ~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 95 TNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 6666666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=3.8e-05 Score=62.07 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=45.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008097 317 GLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREA 395 (577)
Q Consensus 317 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 395 (577)
.|.+.|++++|+..|.++.+..|+. ..|..+...|...|++++|...|+++++.. +.+..+|..++.+|...|++++|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHH
Confidence 3444555555555555554444432 233444445555555555555555555531 22345566666666666666666
Q ss_pred HHHHHHHHh
Q 008097 396 SELMKEMTG 404 (577)
Q Consensus 396 ~~~~~~m~~ 404 (577)
+..+++...
T Consensus 98 ~~~~~~a~~ 106 (159)
T d1a17a_ 98 LRDYETVVK 106 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666655
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.00 E-value=2.2e-05 Score=59.14 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=37.4
Q ss_pred hhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008097 351 FCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGT 429 (577)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 429 (577)
+.+.|++++|...|++.+... +-+...|..+..+|.+.|++++|+..|++.++. .| +...+..+...|...|+.++
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHHH
Confidence 334444444444444444431 113444455555555555555555555554442 23 23344444445555555555
Q ss_pred HHHHHH
Q 008097 430 ALKLVE 435 (577)
Q Consensus 430 a~~~~~ 435 (577)
|.+.++
T Consensus 103 A~~~l~ 108 (112)
T d1hxia_ 103 ALASLR 108 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.5e-05 Score=59.57 Aligned_cols=91 Identities=7% Similarity=-0.015 Sum_probs=41.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcC---CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHh
Q 008097 314 VLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDG---NVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQ 388 (577)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 388 (577)
+++.+...+++++|.+.|++..+..|+. .++..+..++.+.+ +.++|+.+|+++...+..|+ ..+|..+..+|.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~ 84 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 84 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence 3444444455555555555554443332 23333333333322 22345555555544322222 1244455555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 008097 389 EERVREASELMKEMTG 404 (577)
Q Consensus 389 ~g~~~~A~~~~~~m~~ 404 (577)
.|++++|++.|+++++
T Consensus 85 ~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 85 LKEYEKALKYVRGLLQ 100 (122)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5555555555555555
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=0.0068 Score=54.50 Aligned_cols=175 Identities=12% Similarity=-0.002 Sum_probs=94.6
Q ss_pred CCcchHHHHHHHHHhcCCHhHHHHHHHhccCCCceeHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 008097 114 PNSVIYNTLIHSLCKNGKVGRARSLMSDMEEPNDVTFSILICAYCKEENLVNALVLLEKSFSFGFVPDVVTITKVLELLC 193 (577)
Q Consensus 114 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 193 (577)
||..-...+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+..+|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHH
Confidence 3444445566666677777777777776553 6667777777777777777776541 4567777777776
Q ss_pred hcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHH
Q 008097 194 SVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKGCLPNVDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVT 273 (577)
Q Consensus 194 ~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 273 (577)
+......+.. .......+......++..|-..|.+++...++...... -+++...
T Consensus 81 ~~~e~~la~i------------------------~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~ 135 (336)
T d1b89a_ 81 DGKEFRLAQM------------------------CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 135 (336)
T ss_dssp HTTCHHHHHH------------------------TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHH
T ss_pred hCcHHHHHHH------------------------HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHH
Confidence 6655443321 11222234445566777788888888888888876533 2456666
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 274 YDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQ 333 (577)
Q Consensus 274 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 333 (577)
++-++..|++.+ .++ +.+.+... . +......++..|.+.+.++++.-++.+
T Consensus 136 ~~~L~~lyak~~-~~k---l~e~l~~~--s---~~y~~~k~~~~c~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 136 FTELAILYSKFK-PQK---MREHLELF--W---SRVNIPKVLRAAEQAHLWAELVFLYDK 186 (336)
T ss_dssp HHHHHHHHHTTC-HHH---HHHHHHHH--S---TTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hHH---HHHHHHhc--c---ccCCHHHHHHHHHHcCChHHHHHHHHh
Confidence 777777787753 233 33333321 0 223344556666666666655544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=9.9e-05 Score=56.90 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHH
Q 008097 349 LGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPI--------ASTFNTVLSG 420 (577)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------~~~~~~ll~~ 420 (577)
..|.+.|++++|+..|++.++.+ +.+..+|..+..+|.+.|++++|++.++++++. .|+ ..+|..+...
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555432 224455555555555555555555555555431 111 1234444444
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 008097 421 LCRQGNVGTALKLVEEDM 438 (577)
Q Consensus 421 ~~~~g~~~~a~~~~~~~m 438 (577)
+...+++++|..+|++.+
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 445555555555555333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=6.9e-05 Score=57.05 Aligned_cols=92 Identities=13% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 008097 347 KILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEE---RVREASELMKEMTGHGYLPIA-STFNTVLSGLC 422 (577)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~ 422 (577)
++..+...+++++|.+.|++....+ +.+..++..+..++.+.+ ++++|+.+|+++...+..|+. .++..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 3444555556666666666666542 234555555555555433 233466666665543322221 24445555666
Q ss_pred hcCCHHHHHHHHHHhhc
Q 008097 423 RQGNVGTALKLVEEDMR 439 (577)
Q Consensus 423 ~~g~~~~a~~~~~~~m~ 439 (577)
+.|++++|.++|++.+.
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 66666666666664444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=9.6e-05 Score=56.99 Aligned_cols=103 Identities=7% Similarity=0.003 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCC-C-------c
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLP-G-------S 449 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p-~-------~ 449 (577)
.+..+...|.+.|++++|++.|.+.++.+ +.+...+..+..+|.+.|++++|...+++.+. +.| + .
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----l~~~~~~~~~~~a 79 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-----VGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH-----hCcccHHHHHHHH
Confidence 35567888999999999999999999853 23577899999999999999999999996555 333 2 2
Q ss_pred ccHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008097 450 GHYSPLIKALCEKGGFQSASMLLVQMVGKGILPDYLTWN 488 (577)
Q Consensus 450 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 488 (577)
.+|..+...+...+++++|.+.+++... ..|+.....
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~ 116 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLK 116 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHH
Confidence 3567778888889999999999998874 345654443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00029 Score=57.32 Aligned_cols=60 Identities=7% Similarity=-0.153 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+|+.+..+|.+.|++++|+..+++.++. .| +...+..+..+|...|++++|...|++.+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555566666666666666665553 24 444555555556666666666666664333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.76 E-value=0.01 Score=51.68 Aligned_cols=226 Identities=12% Similarity=0.005 Sum_probs=132.3
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c-CHHHHHHHHHHHHhhcCCCCCHhhH
Q 008097 10 DESIFITVIRGLGRARMINDVVKATDLVSRFNMTPSLKIFNSILDVLVK----E-DIDLARAFYRKKMMASGVQGDDYTY 84 (577)
Q Consensus 10 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~-~~~~a~~~~~~~m~~~~~~~~~~~~ 84 (577)
||..+..|...+.+.|++++|++.|++..+.| +...+-.|-..|.. . ++..|...+. .....+ +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~-~a~~~~---~~~a~ 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYA-KACDLN---YSNGC 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH-HHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhc-cccccc---ccchh
Confidence 57788899999999999999999999998754 45555555556655 4 8899998888 444433 33333
Q ss_pred HHHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCCHhHHHHHHHhcc-CCCceeHHHHHH
Q 008097 85 AILMKGLC----LTNRVGDGFKLLHVMKSRGVKPNSVIYNTLIHSLCK----NGKVGRARSLMSDME-EPNDVTFSILIC 155 (577)
Q Consensus 85 ~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 155 (577)
..+...+. ...+.+.|...++...+.|.. .....+...+.. ......+...+.... ..+...+..|..
T Consensus 74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~ 150 (265)
T d1ouva_ 74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhh
Confidence 34433333 256788899999988887632 233334333432 344566666666544 356667777776
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHhhhcCChhHHHHHHHHHHHcC
Q 008097 156 AYCK----EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQGRLGKVKGGCRFLKEMERKG 231 (577)
Q Consensus 156 ~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 231 (577)
.|.. ..+...+...++...+.| +......+...+.... ....+.+.|...|....+.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~---------------~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE---------------GATKNFKEALARYSKACELE 212 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC---------------SSCCCHHHHHHHHHHHHHTT
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCc---------------ccccchhhhhhhHhhhhccc
Confidence 6664 344556666666655543 3334433433333200 01123333333444444443
Q ss_pred CCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 008097 232 CLPNVDTYNILISSYCE----TGVLDSALDVFNDMKIDG 266 (577)
Q Consensus 232 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 266 (577)
++..+..|...|.. ..+.++|.+.|++....|
T Consensus 213 ---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 213 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 34455555555543 235667777777766655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00031 Score=57.16 Aligned_cols=66 Identities=9% Similarity=-0.105 Sum_probs=53.6
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS 412 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 412 (577)
++.+...|.+.|++++|+..+++.+... |.++.+|..+..+|...|++++|+..|++..+ +.|+..
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~ 130 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNK 130 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCH
Confidence 4456677888999999999999998863 33788899999999999999999999999987 456433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.69 E-value=0.0004 Score=55.32 Aligned_cols=60 Identities=8% Similarity=-0.068 Sum_probs=30.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
+|+.+..+|.+.|++++|++.+++.++. .| +..+|..+..++...|++++|...|++.+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555542 23 344555555555555555555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.64 E-value=0.00058 Score=54.29 Aligned_cols=63 Identities=13% Similarity=-0.043 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
.+|+.+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555566666666666666666665542 335556666666666666666666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.00048 Score=56.33 Aligned_cols=56 Identities=11% Similarity=0.047 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+..+...+...|++++|+..++++.+. .| +...|..++.+|.+.|+.++|++.|+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~ 125 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYR 125 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4445555555555555555555555542 23 44455555555555555555555555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.53 E-value=0.00044 Score=56.15 Aligned_cols=55 Identities=11% Similarity=-0.077 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 379 YDCLIHAYCQEERVREASELMKEMTGHGYLP-IASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 379 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
|..+..+|.+.|++++|+..+.+.++. .| +...|..+..++.+.|++++|+..|+
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~ 135 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLK 135 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence 333444444444444444444444432 22 23334444444444444444444444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=4.4e-05 Score=74.63 Aligned_cols=113 Identities=5% Similarity=-0.130 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008097 307 RISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAY 386 (577)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 386 (577)
+...+..+...+.+.|+.++|...+.......|. ..+..+...+...|++++|...|.+..+. .+.+..+|+.+...|
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-HCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILA 196 (497)
T ss_dssp ------------------------CCHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 3445566666666777777776666555443221 23455666677777777777777777764 223456777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008097 387 CQEERVREASELMKEMTGHGYLPIASTFNTVLSGLC 422 (577)
Q Consensus 387 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 422 (577)
...|+..+|+..|.+.+... .|-..++..|...+.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 77777777777777777643 345555666655543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.50 E-value=0.0014 Score=52.89 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 008097 378 IYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMR 439 (577)
Q Consensus 378 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~ 439 (577)
.|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666666532 22444566666666666666666666664443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.48 E-value=0.00056 Score=55.52 Aligned_cols=63 Identities=11% Similarity=-0.062 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
..|..+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|.+.|+...+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345555566666666666666666666543 335556666666666666666666666666655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00037 Score=54.87 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQE----------ERVREASELMKEMTGHGYLP-IASTFNTVLSGLCR 423 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 423 (577)
+.+++|+..|+...+.. |.+..+|..+..+|... +.+++|+..|++.++ +.| +..+|..+..+|..
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHHHHHH
Confidence 33455555555555431 22444555555554432 233455555555554 234 33445555555544
Q ss_pred cC-----------CHHHHHHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 008097 424 QG-----------NVGTALKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 424 ~g-----------~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 479 (577)
.| .+++|.+.|++.+. +.|+...|..-+..+ .+|.+++.+..++|
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~-----l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccc-----cCCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 33 24666666665555 566555554433333 34455555554444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.36 E-value=0.0019 Score=52.14 Aligned_cols=66 Identities=11% Similarity=-0.062 Sum_probs=53.1
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008097 344 RSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS 412 (577)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 412 (577)
++.+..+|.+.|++++|+..+++.+... +.+..+|..+..+|...|++++|+..|++.++ +.|+..
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~ 132 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNK 132 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 3445667788899999999999988863 45788888999999999999999999999987 456543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.26 E-value=0.0032 Score=51.16 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008097 236 VDTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLME 298 (577)
Q Consensus 236 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 298 (577)
...+..+...+...|++++|+..++++.... +-+...|..++.+|.+.|+..+|.+.|+.+.
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3455666777777777777777777776653 4466677777777777777777777777653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.00091 Score=64.96 Aligned_cols=214 Identities=12% Similarity=-0.033 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHHh----hh---------cCChhHHHHHHHHHHHc
Q 008097 165 NALVLLEKSFSFGFVPD-VVTITKVLELLCSVGRVMDAVEILEESGEQ----GR---------LGKVKGGCRFLKEMERK 230 (577)
Q Consensus 165 ~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~---------~g~~~~a~~~~~~~~~~ 230 (577)
+|.+.|++.... +|+ ...+..+..++...+++++| ++.++.. .. ...+..+...++...+.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~ 78 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN 78 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence 678888887653 444 23444455556666666554 3443322 00 01122334444444433
Q ss_pred CCCCChhhHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCCCCc
Q 008097 231 GCLPNVDTYNILISSY--CETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDSKEGSKGRI 308 (577)
Q Consensus 231 ~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 308 (577)
...++..-.......+ ...+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+....... ..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~ 152 (497)
T d1ya0a1 79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-----CQ 152 (497)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-----HH
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-----HH
Confidence 3223332222222222 12344444444444333221 3345566777777888888888888777665431 12
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 008097 309 SPYNSVLYGLYRENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYC 387 (577)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 387 (577)
.++..+...+...|++++|...+.+..+..|+. ..|+.+...|...|+..+|...|.+.+.. .+|-..++..|...+.
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH
Confidence 456778888888999999999999998887765 57888888888999999999999988875 3466778888877765
Q ss_pred hcC
Q 008097 388 QEE 390 (577)
Q Consensus 388 ~~g 390 (577)
+..
T Consensus 232 ~~~ 234 (497)
T d1ya0a1 232 KAL 234 (497)
T ss_dssp HHT
T ss_pred Hhh
Confidence 543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.18 E-value=0.0006 Score=59.62 Aligned_cols=121 Identities=10% Similarity=0.049 Sum_probs=82.5
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 008097 352 CVDGNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS-TFNTVLSGLCRQGNVGTA 430 (577)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 430 (577)
.+.|++++|+..+++.++. .+.|...+..+...|+..|++++|.+.|+...+ ..|+.. .+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccHHH
Confidence 4678899999999999886 345788999999999999999999999999987 457543 444444444433333333
Q ss_pred HHHHHHhhcccCCCCCCCcccHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 008097 431 LKLVEEDMRGIGRGSLPGSGHYSPLIKALCEKGGFQSASMLLVQMVGK 478 (577)
Q Consensus 431 ~~~~~~~m~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 478 (577)
..-.. .-. ..+-.++...+......+.+.|+.++|.++++++.+.
T Consensus 84 ~~~~~-~~~--~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAA-TAK--VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCC-CEE--CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhh-hhh--cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22211 000 0111123344555667788999999999999998853
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.06 E-value=0.00022 Score=62.56 Aligned_cols=114 Identities=20% Similarity=0.119 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCc-eehHHHHHHhhhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHH
Q 008097 321 ENQQDEALEYLKQMEKLFPRA-VDRSLKILGFCVDGNVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASEL 398 (577)
Q Consensus 321 ~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 398 (577)
.|++++|+..+++..+..|+. ..+..+...|+..|++++|...|+...+. .|+ ...+..+...+...+..+++..-
T Consensus 9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 444444444444444444332 33444444455555555555555555442 222 33333333444333333333332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008097 399 MKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 399 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
.......+-.++...+......+...|+.++|...+++
T Consensus 87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124 (264)
T ss_dssp CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 22211111111222333444555666777777776663
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.05 E-value=0.001 Score=52.16 Aligned_cols=70 Identities=3% Similarity=-0.173 Sum_probs=37.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC----------CChHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 008097 248 ETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSG----------GRIDDGLKILQLMEDSKEGSKGRISPYNSVLYG 317 (577)
Q Consensus 248 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 317 (577)
+.+.+++|+..|+...+.. |.+..++..+..+|... +.+++|+..|+...+.+|. +..+|..+..+
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~---~~~a~~~lG~~ 84 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch---hhHHHhhHHHH
Confidence 4445666666666666543 33455555555555432 3345666666666655322 44555555555
Q ss_pred HHhc
Q 008097 318 LYRE 321 (577)
Q Consensus 318 ~~~~ 321 (577)
|...
T Consensus 85 y~~~ 88 (145)
T d1zu2a1 85 YTSF 88 (145)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.99 E-value=0.0019 Score=51.43 Aligned_cols=101 Identities=14% Similarity=0.003 Sum_probs=69.6
Q ss_pred hhHHHH--HHHHHhcCCHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccc--
Q 008097 377 VIYDCL--IHAYCQEERVREASELMKEMTGHG-YLPI----------ASTFNTVLSGLCRQGNVGTALKLVEEDMRGI-- 441 (577)
Q Consensus 377 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~-- 441 (577)
.+|..+ ...+.+.|++++|++.|++.++.. -.|+ ...|+.+..+|...|++++|...+++.+.-.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 445566788999998888887411 0121 3568888889999999999998888555410
Q ss_pred CCCCCCC-----cccHHHHHHHHHHcCChhHHHHHHHHHHH
Q 008097 442 GRGSLPG-----SGHYSPLIKALCEKGGFQSASMLLVQMVG 477 (577)
Q Consensus 442 ~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 477 (577)
.....++ ...|..+..+|...|++++|.+.+++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111221 22467788999999999999999999764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.0053 Score=48.63 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 008097 415 NTVLSGLCRQGNVGTALKLVEE 436 (577)
Q Consensus 415 ~~ll~~~~~~g~~~~a~~~~~~ 436 (577)
..+..+|...|++++|...|++
T Consensus 104 ~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 104 YSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.04 E-value=0.013 Score=41.48 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 008097 414 FNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 414 ~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
+..+..++.+.|++++|+..++
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~ 70 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTK 70 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHH
Confidence 3333444444444444444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.017 Score=40.95 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhccCCCCC---C-cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 008097 276 TLIRGLCSGGRIDDGLKILQLMEDSKEGSKG---R-ISPYNSVLYGLYRENQQDEALEYLKQMEKLFP 339 (577)
Q Consensus 276 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p 339 (577)
.+...+.+.|++++|+..|++..+..+.... + ..+++.+..++.+.|++++|+..++++.+..|
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 3444455555555555555554432111110 0 12244444444455555555444444444444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.40 E-value=0.3 Score=35.41 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHHh---hhcCChhHHHHHHHHHHHcCCCCCh
Q 008097 160 EENLVNALVLLEKSFSFGFVPDVVTITKVLELLCSVGRVMDAVEILEESGEQ---GRLGKVKGGCRFLKEMERKGCLPNV 236 (577)
Q Consensus 160 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~g~~~~a~~~~~~~~~~~~~p~~ 236 (577)
.|..++..++..+..... +..-|+-++--....-+-+-..+.++.+.+. ..|+++.....-+-.+-. +.
T Consensus 15 dG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~-----~s 86 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT-----LN 86 (161)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC-----CC
T ss_pred hhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc-----hH
Confidence 455555555555554321 2223333333333333333344444443333 455555555444433322 55
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Q 008097 237 DTYNILISSYCETGVLDSALDVFNDMKIDGISWNFVTYDTLIRGLCSGGRIDDGLKILQLMEDS 300 (577)
Q Consensus 237 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 300 (577)
...+..++...+.|+-|+-.++++.+.+.+ +|++.....+..+|.+.|...++-+++.+.-+.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 567777888889999999999998877644 677888888899999999999999998888776
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.77 E-value=0.47 Score=34.35 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=77.7
Q ss_pred cCCChHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCceehHHHHHHhhhcCCHHHHHH
Q 008097 283 SGGRIDDGLKILQLMEDSKEGSKGRISPYNSVLYGLYRENQQDEALEYLKQMEKLFPRAVDRSLKILGFCVDGNVEDAKR 362 (577)
Q Consensus 283 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 362 (577)
-.|.+++..+++.+...+. +..-||.+|--....-+-+-..+.++.+-+.+. ..+|+++.....
T Consensus 14 ldG~ve~Gveii~k~~~ss-----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD-----------ls~C~Nlk~vv~ 77 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS-----TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-----------LDKCQNLKSVVE 77 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS-----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-----------GGGCSCTHHHHH
T ss_pred HhhhHHhHHHHHHHHcccC-----CccccceeeeecccccchHHHHHHHHHHhhhcC-----------chhhhcHHHHHH
Confidence 3466777777777666542 333455555544555555555555555443211 124555555544
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008097 363 CFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVE 435 (577)
Q Consensus 363 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 435 (577)
.+-.+- .+....+.-++.+.++|+-+.-.++++.+.+.+ +|++.....+..||.+.|...++-.++.
T Consensus 78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 444332 344556666777777777777777777766543 6677777777777777777777777777
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.59 E-value=0.42 Score=35.73 Aligned_cols=110 Identities=6% Similarity=-0.062 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGNVGTAL 431 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~ 431 (577)
++++|.+.|++..+.|. ...+..+. .....+.++|++++++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45566666666655432 22222222 223445667777777766655 23333334444432 34567777
Q ss_pred HHHHHhhcccCCCCCCCcccHHHHHHHHHH----cCChhHHHHHHHHHHHCC
Q 008097 432 KLVEEDMRGIGRGSLPGSGHYSPLIKALCE----KGGFQSASMLLVQMVGKG 479 (577)
Q Consensus 432 ~~~~~~m~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 479 (577)
++|++... . -++.....|...|.. ..+.++|.+++++.-+.|
T Consensus 80 ~~~~~aa~---~---g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACG---L---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHH---T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhc---c---CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77774333 1 133444555555554 346677777777776655
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=92.84 E-value=1.3 Score=32.80 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 008097 355 GNVEDAKRCFDQMIEEGGVPNVVIYDCLIHAYCQ----EERVREASELMKEMTGHGYLPIASTFNTVLSGLCR----QGN 426 (577)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~ 426 (577)
.+.++|...|++..+.| ++.....|...|.. ..+.++|+++|++..+.| ++.....|...|.+ ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 45556666666665543 33444444444443 335667777777776655 22333334444443 345
Q ss_pred HHHHHHHHHH
Q 008097 427 VGTALKLVEE 436 (577)
Q Consensus 427 ~~~a~~~~~~ 436 (577)
.++|.++|++
T Consensus 111 ~~~A~~~~~~ 120 (133)
T d1klxa_ 111 EKQAVKTFEK 120 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666663
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.79 E-value=0.35 Score=33.12 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccCCCCCCCcccHHHHHH
Q 008097 391 RVREASELMKEMTGHGYLPIASTFNTVLSGLCRQGNVGTALKLVEEDMRGIGRGSLPGSGHYSPLIK 457 (577)
Q Consensus 391 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~m~~~~~~~~p~~~~~~~li~ 457 (577)
+.-++.+-++.+....+.|++....+.+.||.+..++.-|.++|+ .++ ..+.++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE-~vK---~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE-VVK---DKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH-HHH---HHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH-HHH---HHhcCcHHHHHHHHH
Confidence 445666667777777788999999999999999999999999998 776 223345566776653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.45 E-value=5.2 Score=36.75 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=13.7
Q ss_pred HHHHHhccCChhHHHHHHHHHhh
Q 008097 17 VIRGLGRARMINDVVKATDLVSR 39 (577)
Q Consensus 17 l~~~~~~~g~~~~a~~~~~~~~~ 39 (577)
.+....+.|+...+.++...+.+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d 34 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD 34 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC
Confidence 33444566777777666666643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.67 E-value=0.52 Score=34.36 Aligned_cols=54 Identities=6% Similarity=-0.064 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 008097 356 NVEDAKRCFDQMIEEGGVPN-VVIYDCLIHAYCQEERVREASELMKEMTGHGYLPIAS 412 (577)
Q Consensus 356 ~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 412 (577)
++++++.+|+++.+.+ +.+ ...+-.+.-+|.+.|++++|.+.++.+.+ +.|+..
T Consensus 53 d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 53 DERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 3456666666666532 112 24555566667777777777777777766 446543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.76 E-value=2 Score=31.18 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHhccCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 008097 287 IDDGLKILQLMEDSKEGSKGR-ISPYNSVLYGLYRENQQDEALEYLKQMEKLFPR 340 (577)
Q Consensus 287 ~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~p~ 340 (577)
.++|+.+++.+.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+..|+
T Consensus 54 ~~~gI~lLe~~~~~~---p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445555665555431 111 123344445555556666666555555555554
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