Citrus Sinensis ID: 008105

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------
Protein Sequence
MGYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Secondary Structure (PSIPRED)
cccccccHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHccccHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEcc
Coil and Loop (DISEMBL)
mgytvvppnsiielhclpnlqwcsrqvslqhgvvnnhrTQFYSQLRdlgagrnvslkcrglpgnvcidrvnevdqdewsseshvLAVNKKLRGLtitkkshdpslpssdgpfvendektNNKILQNfcsrgkltdasKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMsggvpdtiTYNMMVGGLCKRGQIRSAIALLDemsvsgcepdviTYNTILRTmfdngkfkQAIGFWKdqlrkgcppylITYTILIEQVCKQCGIARAIEVLDDmaiegcspdivtYNSLVNfsckqgkyddAVLVINNLLsrgmepnsitYNTLLHslgsrgcwdAVDKILDIMneashsptvftYNILINGLCKYGLVDRAINSFNQMvskncqpdiVTYNTVLGALCKEGMLNEALQLLHllngsscspclitYNTLIDGLAKKGCMEKAMVLYGQMmengispddithrtLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIssrykpddtVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFekgttlla
Flexible Loop (DISEMBL)
mgytvvppnsIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEvdqdewsseshvlavnKKLRGLTitkkshdpslpssdgpfvendEKTNNKIlqnfcsrgkltDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEigkrgnkmrnSAYRLVIHGLCKSKKVDMAIQVLELMissrykpddtVFSTIVKKVADDGMTEEAYKLWQKLIewkvfekgttlla
Low Complexity Region (SEG)
MGYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMlnealqllhllNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Disordered region (IsUnstruct)
****VVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGL****************************ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT****
Disordered Region (DISOPRED)
*GYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Disordered Region (DISEMBL)
MGYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEV********SHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Disordered Region (DISPRO)
MGYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGYTVVPPNSIIELHCLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	577	2.2.26 [Sep-21-2011]
Q9FRS4	559	Pentatricopeptide repeat-	yes	no	0.876	0.905	0.589	1e-178
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.804	0.775	0.401	1e-105
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.766	0.734	0.322	1e-74
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.906	0.830	0.266	1e-62
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.774	0.728	0.286	1e-62
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.736	0.675	0.284	2e-62
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.795	0.614	0.291	2e-61
Q9SXD8	634	Pentatricopeptide repeat-	no	no	0.753	0.686	0.286	4e-61
Q9CAM8	629	Pentatricopeptide repeat-	no	no	0.779	0.715	0.284	8e-61
Q9CA58	763	Putative pentatricopeptid	no	no	0.774	0.585	0.301	1e-60

>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1

 Score =  625 bits (1613), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/511 (58%), Positives = 391/511 (76%), Gaps = 5/511 (0%)

Query: 46  RDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL 105
           +++G  ++V  +C GL  +VCID VN  D  E SSE H   V   LR      K    S 
Sbjct: 38  QEIGLKKDVFFRCHGLLSSVCIDNVN--DHAERSSEFHHYGVGTNLRARVKPMKQFGLS- 94

Query: 106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI 165
             SDGP  ENDE+TNN+IL N CS GKLTDA KL+++MAR NQ+P F  C NL+RGL RI
Sbjct: 95  --SDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARI 152

Query: 166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225
           D+++KA  +L++MVMSGGVPDTITYNM++G LCK+G IR+A+ LL++MS+SG  PDVITY
Sbjct: 153 DQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITY 212

Query: 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285
           NT++R MFD G  +QAI FWKDQL+ GCPP++ITYT+L+E VC+ CG ARAIEVL+DMA+
Sbjct: 213 NTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAV 272

Query: 286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345
           EGC PDIVTYNSLVN++C++G  ++   VI ++LS G+E N++TYNTLLHSL S   WD 
Sbjct: 273 EGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDE 332

Query: 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405
           V++IL+IM + S+ PTV TYNILINGLCK  L+ RAI+ F QM+ + C PDIVTYNTVLG
Sbjct: 333 VEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLG 392

Query: 406 ALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465
           A+ KEGM+++A++LL LL  + C P LITYN++IDGLAKKG M+KA+ LY QM++ GI P
Sbjct: 393 AMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFP 452

Query: 466 DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525
           DDIT R+LI+GFCRA+ VEEA  +LKE   RGN +R S YRLVI GLCK K+++MAI+V+
Sbjct: 453 DDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVV 512

Query: 526 ELMISSRYKPDDTVFSTIVKKVADDGMTEEA 556
           E+M++   KPD+T+++ IVK V + GM  EA
Sbjct: 513 EIMLTGGCKPDETIYTAIVKGVEEMGMGSEA 543

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  384 bits (985), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/503 (40%), Positives = 301/503 (59%), Gaps = 39/503 (7%)

Query: 107 SSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166
           S +  F   D ++NN + Q     G+L +  K ++ M     +PD   C  LIRG  R+ 
Sbjct: 93  SVNSSFALEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLG 151

Query: 167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYN 226
           +  KA+K+L+I+  SG VPD ITYN+M+ G CK G+I +A+++LD MSVS   PDV+TYN
Sbjct: 152 KTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYN 208

Query: 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286
           TILR++ D+GK KQA+      L++ C P +ITYTILIE  C+  G+  A+++LD+M   
Sbjct: 209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268

Query: 287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV 346
           GC+PD+VTYN LVN  CK+G+ D+A+  +N++ S G +PN IT+N +L S+ S G W   
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query: 347 DKILDIMNEASHSPTVFTYNILINGLCKYGLV---------------------------- 378
           +K+L  M     SP+V T+NILIN LC+ GL+                            
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query: 379 -------DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC 431
                  DRAI    +MVS+ C PDIVTYNT+L ALCK+G + +A+++L+ L+   CSP 
Sbjct: 389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query: 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLK 491
           LITYNT+IDGLAK G   KA+ L  +M    + PD IT+ +L+ G  R  +V+EA+    
Sbjct: 449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query: 492 EIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG 551
           E  + G +     +  ++ GLCKS++ D AI  L  MI+   KP++T ++ +++ +A +G
Sbjct: 509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568

Query: 552 MTEEAYKLWQKLIEWKVFEKGTT 574
           M +EA +L  +L    + +K + 
Sbjct: 569 MAKEALELLNELCNKGLMKKSSA 591

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 154/478 (32%), Positives = 244/478 (51%), Gaps = 36/478 (7%)

Query: 122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181
           KI    C  G   ++  L++ M R+   PD   C  LI+G   +  I KA +V++I+   
Sbjct: 94  KIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILE-K 152

Query: 182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQA 241
            G PD   YN ++ G CK  +I  A  +LD M      PD +TYN ++ ++   GK   A
Sbjct: 153 FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 212

Query: 242 IGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNF 301
           +      L   C P +ITYTILIE    + G+  A++++D+M   G  PD+ TYN+++  
Sbjct: 213 LKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRG 272

Query: 302 SCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDK------------- 348
            CK+G  D A  ++ NL  +G EP+ I+YN LL +L ++G W+  +K             
Sbjct: 273 MCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPN 332

Query: 349 ----------------------ILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFN 386
                                 +L +M E   +P  ++Y+ LI   C+ G +D AI    
Sbjct: 333 VVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLE 392

Query: 387 QMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG 446
            M+S  C PDIV YNTVL  LCK G  ++AL++   L    CSP   +YNT+   L   G
Sbjct: 393 TMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452

Query: 447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR 506
              +A+ +  +MM NGI PD+IT+ ++I   CR   V+EA +LL ++           Y 
Sbjct: 453 DKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYN 512

Query: 507 LVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI 564
           +V+ G CK+ +++ AI VLE M+ +  +P++T ++ +++ +   G   EA +L   L+
Sbjct: 513 IVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/560 (26%), Positives = 279/560 (49%), Gaps = 37/560 (6%)

Query: 18  PNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSL-----KCRGLPGNV------- 65
           P+   CS  V    GV  ++R    ++L DL     V+L     K R  P  V       
Sbjct: 30  PSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLS 89

Query: 66  CIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQ 125
            I ++N+ D         V+++ ++++ L I+   +  S+                 ++ 
Sbjct: 90  AIAKMNKFDL--------VISLGEQMQNLGISHNLYTYSI-----------------LIN 124

Query: 126 NFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP 185
            FC R +L+ A  ++  M +    PD     +L+ G    +RI  A  ++  MV  G  P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184

Query: 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFW 245
           D+ T+N ++ GL +  +   A+AL+D M V GC+PD++TY  ++  +   G    A+   
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLL 244

Query: 246 KDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ 305
           K   +    P ++ Y  +I+ +C    +  A+ +  +M  +G  P++VTYNSL+   C  
Sbjct: 245 KKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNY 304

Query: 306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTY 365
           G++ DA  ++++++ R + PN +T++ L+ +    G     +K+ D M + S  P +FTY
Sbjct: 305 GRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 364

Query: 366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425
           + LING C +  +D A + F  M+SK+C P++VTYNT++   CK   ++E ++L   ++ 
Sbjct: 365 SSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ 424

Query: 426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE 485
                  +TY TLI G  +    + A +++ QM+ +G+ PD +T+  L+ G C   +VE 
Sbjct: 425 RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVET 484

Query: 486 AVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545
           A+ + + + +   +     Y ++I G+CK+ KV+    +   +     KP+   ++T++ 
Sbjct: 485 ALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMS 544

Query: 546 KVADDGMTEEAYKLWQKLIE 565
                G+ EEA  L++++ E
Sbjct: 545 GFCRKGLKEEADALFREMKE 564

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  241 bits (616), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 130/453 (28%), Positives = 242/453 (53%)

Query: 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
           V ++  T N ++   C R +L+ A  ++  M +    P      +L+ G    +RI +A 
Sbjct: 96  VSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV 155

Query: 173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
            ++  MV  G  PDT+T+  +V GL +  +   A+AL++ M V GC+PD++TY  ++  +
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 215

Query: 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI 292
              G+   A+       +      ++ Y+ +I+ +CK   +  A+ +  +M  +G  PD+
Sbjct: 216 CKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query: 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI 352
            TY+SL++  C  G++ DA  +++++L R + PN +T+N+L+ +    G     +K+ D 
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query: 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412
           M + S  P + TYN LING C +  +D A   F  MVSK+C PD+VTYNT++   CK   
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query: 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472
           + + ++L   ++        +TY TLI G  +    + A +++ QM+ +G+ P+ +T+ T
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query: 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532
           L+ G C+  ++E+A+ + + + K   +     Y ++  G+CK+ KV+    +   +    
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515

Query: 533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
            KPD   ++T++      G+ EEAY L+ K+ E
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE 548

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  240 bits (612), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 242/453 (53%)

Query: 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
           +  D  + N ++  FC R +L  A  ++  M +    PD     +L+ G     RI +A 
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170

Query: 173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
            ++  M +    P+T+T+N ++ GL    +   A+AL+D M   GC+PD+ TY T++  +
Sbjct: 171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230

Query: 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI 292
              G    A+   K   +      ++ YT +I+ +C    +  A+ +  +M  +G  P++
Sbjct: 231 CKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 290

Query: 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI 352
           VTYNSL+   C  G++ DA  ++++++ R + PN +T++ L+ +    G     +K+ D 
Sbjct: 291 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 350

Query: 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412
           M + S  P +FTY+ LING C +  +D A + F  M+SK+C P++VTYNT++   CK   
Sbjct: 351 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410

Query: 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472
           + E ++L   ++        +TYNTLI GL + G  + A  ++ +M+ +G+ PD IT+  
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470

Query: 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532
           L+ G C+  ++E+A+ + + + K   +     Y ++I G+CK+ KV+    +   +    
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530

Query: 533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
            KP+  +++T++      G+ EEA  L++++ E
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  237 bits (604), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 240/474 (50%), Gaps = 15/474 (3%)

Query: 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIM 178
           T N +++ FC  G +  A  L D M  +  +P+      LI G  ++ +I+   K+L+ M
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query: 179 VMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238
            + G  P+ I+YN+++ GLC+ G+++    +L EM+  G   D +TYNT+++     G F
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326

Query: 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL 298
            QA+    + LR G  P +ITYT LI  +CK   + RA+E LD M + G  P+  TY +L
Sbjct: 327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTL 386

Query: 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH 358
           V+   ++G  ++A  V+  +   G  P+ +TYN L++     G  +    +L+ M E   
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query: 359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418
           SP V +Y+ +++G C+   VD A+    +MV K  +PD +TY++++   C++    EA  
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478
           L   +      P   TY  LI+    +G +EKA+ L+ +M+E G+ PD +T+  LI G  
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIH---------------GLCKSKKVDMAIQ 523
           +  +  EA  LL ++    +   +  Y  +I                G C    +  A Q
Sbjct: 567 KQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQ 626

Query: 524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA 577
           V E M+   +KPD T ++ ++      G   +AY L++++++        T++A
Sbjct: 627 VFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIA 680

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1

 Score =  236 bits (601), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 234/447 (52%)

Query: 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIM 178
           T N ++  FC R +++ A  L+  M +    P      +L+ G     RI  A  ++  M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 179 VMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238
           V  G  PDTIT+  ++ GL    +   A+AL+D M   GC+P+++TY  ++  +   G  
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL 298
             A+              ++ +  +I+ +CK   +  A+ +  +M  +G  P++VTY+SL
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query: 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH 358
           ++  C  G++ DA  ++++++ + + PN +T+N L+ +    G +   +K+ D M + S 
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361

Query: 359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418
            P +FTYN L+NG C +  +D+A   F  MVSK+C PD+VTYNT++   CK   + +  +
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query: 419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478
           L   ++        +TY TLI GL   G  + A  ++ QM+ +G+ PD +T+  L+ G C
Sbjct: 422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Query: 479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDT 538
              ++E+A+++   + K   K+    Y  +I G+CK+ KVD    +   +     KP+  
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541

Query: 539 VFSTIVKKVADDGMTEEAYKLWQKLIE 565
            ++T++  +    + +EAY L +K+ E
Sbjct: 542 TYNTMISGLCSKRLLQEAYALLKKMKE 568

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1

 Score =  235 bits (599), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 235/453 (51%), Gaps = 3/453 (0%)

Query: 113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
           + +D  T +  +  FC R +L+ A  ++  M +    PD     +L+ G     RI  A 
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173

Query: 173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
            ++  MV  G  PDT T+  ++ GL    +   A+AL+D+M   GC+PD++TY T++  +
Sbjct: 174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233

Query: 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI 292
              G    A+              ++ +  +I+ +CK   +  A+++  +M  +G  P++
Sbjct: 234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293

Query: 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI 352
           VTYNSL+N  C  G++ DA  +++N+L + + PN +T+N L+ +    G     +K+ + 
Sbjct: 294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353

Query: 353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412
           M + S  P   TYN+LING C +  +D A   F  MVSK+C P+I TYNT++   CK   
Sbjct: 354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413

Query: 413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472
           + + ++L   ++        +TY T+I G  + G  + A +++ QM+ N +  D +T+  
Sbjct: 414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSI 473

Query: 473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532
           L+ G C   +++ A+ + K + K   ++    Y  +I G+CK+ KV    +  +L  S  
Sbjct: 474 LLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVG---EAWDLFCSLS 530

Query: 533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
            KPD   ++T++  +    + +EA  L++K+ E
Sbjct: 531 IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1

 Score =  234 bits (598), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 135/448 (30%), Positives = 234/448 (52%), Gaps = 1/448 (0%)

Query: 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIM 178
           T N  +Q  C RG+L  A +++  +  +   PD     NLI GL +  + ++A   L  M
Sbjct: 253 TYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKM 312

Query: 179 VMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238
           V  G  PD+ TYN ++ G CK G ++ A  ++ +   +G  PD  TY +++  +   G+ 
Sbjct: 313 VNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGET 372

Query: 239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL 298
            +A+  + + L KG  P +I Y  LI+ +  Q  I  A ++ ++M+ +G  P++ T+N L
Sbjct: 373 NRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNIL 432

Query: 299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH 358
           VN  CK G   DA  ++  ++S+G  P+  T+N L+H   ++   +   +ILD+M +   
Sbjct: 433 VNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGV 492

Query: 359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ 418
            P V+TYN L+NGLCK    +  + ++  MV K C P++ T+N +L +LC+   L+EAL 
Sbjct: 493 DPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALG 552

Query: 419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWGF 477
           LL  +   S +P  +T+ TLIDG  K G ++ A  L+ +M E   +S    T+  +I  F
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAF 612

Query: 478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537
                V  A  L +E+  R        YRL++ G CK+  V++  + L  M+ + + P  
Sbjct: 613 TEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSL 672

Query: 538 TVFSTIVKKVADDGMTEEAYKLWQKLIE 565
           T    ++  +  +    EA  +  ++++
Sbjct: 673 TTLGRVINCLCVEDRVYEAAGIIHRMVQ 700

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
359488082	498	PREDICTED: pentatricopeptide repeat-cont	0.804	0.931	0.700	0.0
224144580	481	predicted protein [Populus trichocarpa]	0.821	0.985	0.672	0.0
302143623	554	unnamed protein product [Vitis vinifera]	0.930	0.969	0.599	0.0
356574876	589	PREDICTED: pentatricopeptide repeat-cont	0.996	0.976	0.556	0.0
449449679	594	PREDICTED: pentatricopeptide repeat-cont	0.906	0.880	0.607	0.0
147789723	550	hypothetical protein VITISV_025966 [Viti	0.875	0.918	0.638	0.0
297849166	555	pentatricopeptide repeat-containing prot	0.883	0.918	0.590	1e-180
15223266	559	pentatricopeptide repeat-containing prot	0.876	0.905	0.589	1e-176
357441367	573	Pentatricopeptide repeat-containing prot	0.892	0.898	0.549	1e-167
255561941	496	pentatricopeptide repeat-containing prot	0.772	0.899	0.573	1e-142

>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/464 (70%), Positives = 388/464 (83%)

Query: 110 GPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIE 169
           G FV NDE+TNN+ILQN CS+GKL +AS+LID+MARRNQIP F  CINLIRGLI+++  E
Sbjct: 32  GSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLESTE 91

Query: 170 KASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL 229
           +A++VL+IMVMSGG+PD ITYNM+VGGLCK+G +++AI LLDEMS+SGC PD ITYNTIL
Sbjct: 92  RATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYNTIL 151

Query: 230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS 289
           R MFD+G F QAIGFWKDQLRKGCP YLITYT+LIE VCK CG  +A+EVL+DMAIEGC 
Sbjct: 152 RCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIEGCY 211

Query: 290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKI 349
           PDIVTYNSLVN++CKQGKY+D  L+I NLLS GM PN++TYNTLLHSL + G WD VD+I
Sbjct: 212 PDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEVDEI 271

Query: 350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409
           L IMN  S  PTV TYNILINGLCKYGL+DRAIN F+QMVS NC PDI+TYNT+L ALCK
Sbjct: 272 LLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCK 331

Query: 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT 469
           EGM++EAL LLH LN + CSP LITYN +IDGLAKKGCMEKAM LYG+M+E G +PDDIT
Sbjct: 332 EGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDIT 391

Query: 470 HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529
           HRTL WG  R D VE+A+ +LKE+ KR  +++NSA+R VIHGLCK KKVD+AIQVLE+M+
Sbjct: 392 HRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCKKKKVDIAIQVLEMMV 451

Query: 530 SSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT 573
           SS+ KP++ ++S I+K V   GM EEA +L QKL E KVF + T
Sbjct: 452 SSQCKPNEEIYSAIIKGVGAAGMIEEANQLHQKLTELKVFREET 495

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa] gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/474 (67%), Positives = 397/474 (83%)

Query: 96  ITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFC 155
           +T ++H  S+  +DGP VENDE+TNN+IL N C +G L +A+KLIDIM+R NQIP+    
Sbjct: 1   MTTRNHGSSILFADGPLVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCS 60

Query: 156 INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSV 215
            NLIRGL+RI RIE+AS+VL+ MVMSG VPD ITYNMMVGG CKR Q+RSAI LL++MS+
Sbjct: 61  TNLIRGLVRIGRIERASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSL 120

Query: 216 SGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR 275
           SGC PDVITYNTI+R++FDNGKF QA+ FW+ QLR+GC PYLI YTILIE V K CG  R
Sbjct: 121 SGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVR 180

Query: 276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLH 335
           A+EVL+DMAIEGC PD+VTYNSLVNF+ K+GKY+DA L+I N+LS GMEPN+ITYN+LLH
Sbjct: 181 ALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLH 240

Query: 336 SLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQP 395
           SL S G WD VD+IL IM + SH PTV TYNILINGLCK GLV+RAIN F QMVS+NC P
Sbjct: 241 SLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSP 300

Query: 396 DIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLY 455
           DI+TYNT+L ALCKEGM++EALQ+  LL+ S+CSP LITYNT+IDGL ++G M++A+ LY
Sbjct: 301 DIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLY 360

Query: 456 GQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS 515
            QM+E GI+PD ITHR+L+WGFC  DQVE+AV++L+E+GKR +++ +SAYRLVI+GLC++
Sbjct: 361 NQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRN 420

Query: 516 KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF 569
           K+VD+AIQVLE+MIS RYKPD+ ++ST++K VAD GM EEA +L QKLIE KV 
Sbjct: 421 KRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVL 474

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/587 (59%), Positives = 419/587 (71%), Gaps = 50/587 (8%)

Query: 1   MGYTVVPPNSIIELHCLPNLQW--------CS----RQVSLQHGVVNNHRTQFYSQLR-D 47
           M  TV+   SI E+ CL   Q         CS    +   L   V  N +TQ Y Q + D
Sbjct: 1   MELTVIAHKSITEVPCLHGFQTDLTSASDRCSPVKSQAFQLNCSVNCNFKTQSYLQWKGD 60

Query: 48  LGAGRN-VSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLP 106
             + RN + L+C G   +VCIDRVN  DQ EWSS  +   V KKLR    +KK  + S  
Sbjct: 61  HVSRRNALLLRCIGQERSVCIDRVNGEDQ-EWSSGRYAFGVEKKLREQMSSKKYSNSSNS 119

Query: 107 SSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166
           S DG FV NDE+TNN+ILQN CS+GKL +AS+LID+MARRNQIP F  CINLIRGLI+++
Sbjct: 120 SLDGSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLE 179

Query: 167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYN 226
             E+A++VL+IMVMSGG+PD ITYNM+VGGLCK+G +++AI LLDEMS+SGC PD ITYN
Sbjct: 180 STERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYN 239

Query: 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286
           TILR MFD+G F QAIGFWKDQLRKGCP YLITYT+LIE VCK CG  +A+EVL+DMAIE
Sbjct: 240 TILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIE 299

Query: 287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV 346
           GC PDIVTYNSLVN++CKQGKY+D  L+I NLLS GM PN++TYNTLLHSL + G WD V
Sbjct: 300 GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEV 359

Query: 347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406
           D+IL IMN  S  PTV TYNILINGLCKYGL+DRAIN F+QMVS NC PDI+TYNT+L A
Sbjct: 360 DEILLIMNTTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAA 419

Query: 407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD 466
           LCKEGM++EAL LLH LN + CSP LITYN +IDGLAKKGCMEKAM LYG+M+E G +PD
Sbjct: 420 LCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPD 479

Query: 467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526
           DITHRTL WG  R D VE+A+ +LKE+ KR  +++NSA+R VIHGLC +           
Sbjct: 480 DITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFRFVIHGLCAA----------- 528

Query: 527 LMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT 573
                                   GM EEA +L QKL E KVF + T
Sbjct: 529 ------------------------GMIEEANQLHQKLTELKVFREET 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574876|ref|XP_003555569.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Glycine max]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/588 (55%), Positives = 422/588 (71%), Gaps = 13/588 (2%)

Query: 1   MGYTVVPPNSIIELHCLPNLQWCSRQVS--------LQHGVVNNHRTQFYSQLRDLGAGR 52
           MG+     ++I   H L  L  C++Q S        L H +     T       D  +  
Sbjct: 1   MGHIATLQHNIFSFHSLNGLHICNKQESCILGACSALDHSLRKKTPTLHRICFGDYFSTT 60

Query: 53  NVS-----LKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPS 107
             S     L+CR    +V IDR NEVD ++W   S  +   +  R L  +KKS +    S
Sbjct: 61  KYSIPWKGLRCRSFQRSVLIDRANEVDHEDWCFGSDYVGERRNSRELLDSKKSVNSPTLS 120

Query: 108 SDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR 167
            + PFV+NDE TNN+ILQ  CSRGKLT A++LID+MAR++QIP F  C NLIRG IR   
Sbjct: 121 PEAPFVQNDEMTNNEILQRLCSRGKLTVAARLIDVMARKSQIPHFPSCTNLIRGFIRKGL 180

Query: 168 IEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT 227
           +++A K L  MVMSGGVPDTITYNM++GGLCK G++RSA+ L+++MS+SGC PD ITYN+
Sbjct: 181 VDEACKTLNKMVMSGGVPDTITYNMVIGGLCKNGRLRSALDLVEDMSLSGCSPDAITYNS 240

Query: 228 ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG 287
           I+R +FD G F QA+ FW+DQLRKGCPPYLITYT+LIE VCK CG ARA+EVL+DMA+EG
Sbjct: 241 IIRCLFDKGNFNQAVNFWRDQLRKGCPPYLITYTVLIELVCKYCGAARALEVLEDMAMEG 300

Query: 288 CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD 347
           C PDIVTYNSLVN + KQGKY+D  LVI NLLS GM+PN++TYNTL+HSL + G WD VD
Sbjct: 301 CYPDIVTYNSLVNLTSKQGKYEDTALVILNLLSHGMQPNAVTYNTLIHSLINHGYWDEVD 360

Query: 348 KILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGAL 407
            IL IMNE S  PT  TYNIL+NGLCK GL+DRAI+ ++ MV++NC PDI+TYNT+L  L
Sbjct: 361 DILKIMNETSSPPTHVTYNILLNGLCKSGLLDRAISFYSTMVTENCSPDIITYNTLLSGL 420

Query: 408 CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD 467
           CKEG ++E +QLL+LL G+SCSP L+TYN +IDGLA+ G ME A  LY +M++ GI PD+
Sbjct: 421 CKEGFIDEGIQLLNLLVGTSCSPGLVTYNIVIDGLARLGSMESAKELYDEMVDKGIIPDE 480

Query: 468 ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLEL 527
           ITH +L WGFCRADQ+EEA +LLKE+  +  +++N+AYR VI GLC+ KKVD+AIQVL+L
Sbjct: 481 ITHSSLTWGFCRADQLEEATELLKEMSMKEQRIKNTAYRCVILGLCRQKKVDIAIQVLDL 540

Query: 528 MISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTL 575
           M+  +  PD+ ++S ++K VAD GM +EA  L Q LI+WK+ +K   L
Sbjct: 541 MVKGQCNPDERIYSALIKAVADGGMLKEANDLHQTLIKWKILKKEIML 588

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Cucumis sativus] gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08610-like [Cucumis sativus]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/528 (60%), Positives = 408/528 (77%), Gaps = 5/528 (0%)

Query: 48  LGAGRNVS-LKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKK---SHDP 103
           LG GR    L  +GL  +VCIDRV++  +DE +   H + V +      +TKK   SH+ 
Sbjct: 65  LGLGRKQRVLHFKGLQRSVCIDRVDDTYEDELALNGHEIKVERNFSE-KLTKKRFGSHNC 123

Query: 104 SLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLI 163
           S    DGPFV NDE+TNN ILQ FC +GKL +AS+++DIMA RNQIPDF  CIN+IRG +
Sbjct: 124 SSLYLDGPFVGNDEETNNVILQKFCYKGKLMEASRVVDIMASRNQIPDFECCINMIRGFV 183

Query: 164 RIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVI 223
             DR++KA +VL+IMVMSGGVPD ITYNM++G LCK+G + SAI LL++MS+SGC PDVI
Sbjct: 184 NTDRMDKAVQVLKIMVMSGGVPDIITYNMVIGCLCKQGHLESAIELLNDMSLSGCPPDVI 243

Query: 224 TYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM 283
           TYN ++R MFDNG F QA+ FWK+QLRKG PPYLITYTILIE V K  G   A+EVL++M
Sbjct: 244 TYNAVIRHMFDNGCFDQAVEFWKEQLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEM 303

Query: 284 AIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW 343
           A EGC PD+VTYNSL+N +CKQGK++DA LVI+NLL  GM P+++TYNTLLHSL  RG W
Sbjct: 304 ANEGCYPDLVTYNSLINLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHW 363

Query: 344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTV 403
           D VD+IL IM+ +   PTV T N+LINGLCK GL+D AIN  NQM S NC PDI+TYNT+
Sbjct: 364 DEVDEILKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTL 423

Query: 404 LGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI 463
           LGALCKEGM++EA QLLHLL  ++CSP LI+YNT++DGL++KG M+KAM LY QMMENGI
Sbjct: 424 LGALCKEGMVDEAFQLLHLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGI 483

Query: 464 SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQ 523
            PDD THR++IWGFCR+++  EAV+ LK I K G ++ +S YR+++H LC +KKVD+AIQ
Sbjct: 484 IPDDTTHRSIIWGFCRSNKFVEAVETLKGILKGGYEVNSSFYRILVHELCLNKKVDLAIQ 543

Query: 524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571
           VLE+M+SS  K ++T++STI+  +A  G+ E+A +L QKLIEWKV  K
Sbjct: 544 VLEMMLSSPCKSNETIYSTIINSIASAGLKEQADELRQKLIEWKVLGK 591

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/520 (63%), Positives = 396/520 (76%), Gaps = 15/520 (2%)

Query: 1   MGYTVVPPNSIIELHCLPNLQW--------CS----RQVSLQHGVVNNHRTQFYSQLR-D 47
           M  TV+   SI E+ CL   Q         CS    +   L   V  N +TQ Y Q + D
Sbjct: 1   MELTVIAHKSITEVPCLHGFQTDLSSASDRCSPVKSQAFHLNCSVNCNFKTQSYLQWKGD 60

Query: 48  LGAGRN-VSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLP 106
             + RN + L+C G   +VCIDRVN  DQ EWSS  +   V KKLR    +KK  + S  
Sbjct: 61  HVSRRNALLLRCIGQERSVCIDRVNGEDQ-EWSSGRYAFGVEKKLREQMSSKKYSNSSNS 119

Query: 107 SSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166
           S DG FV NDE+TNN+ILQN CS+GKL +AS+LID+MARRNQIP F  CINLIRGLI+++
Sbjct: 120 SFDGSFVGNDEETNNEILQNLCSKGKLVNASRLIDVMARRNQIPYFPSCINLIRGLIKLE 179

Query: 167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYN 226
             E+A++VL+IMVMSGG+PD ITYNM+VGGLCK+G +++AI LLDEMS+SGC PD ITYN
Sbjct: 180 STERATRVLKIMVMSGGIPDIITYNMLVGGLCKKGLLKTAIELLDEMSLSGCPPDAITYN 239

Query: 227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286
           TILR MFD+G F QAIGFWKDQLRKGCP YLITYT+LIE VCK CG  +A+EVL+DMAIE
Sbjct: 240 TILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKHCGTVQAMEVLEDMAIE 299

Query: 287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV 346
           GC PDIVTYNSLVN++CKQGKY+D  L+I NLLS GM PN++TYNTLLHSL + G WD V
Sbjct: 300 GCYPDIVTYNSLVNYTCKQGKYEDTALIIYNLLSHGMGPNTVTYNTLLHSLCTHGYWDEV 359

Query: 347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406
           D+IL IMN  S  PTV TYNILINGLCKYGL+DRAIN F+QMVS NC PDI+TYNT+L A
Sbjct: 360 DEILLIMNMTSQPPTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAA 419

Query: 407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD 466
           LCKEGM++EAL LLH LN + CSP LITYN +IDGLAKKGCMEKAM LYG+M+E G +PD
Sbjct: 420 LCKEGMVDEALHLLHSLNDTRCSPGLITYNIVIDGLAKKGCMEKAMGLYGEMIERGFAPD 479

Query: 467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR 506
           DITHRTL WG  R D VE+A+ +LKE+ KR  +++NSA+R
Sbjct: 480 DITHRTLFWGLFRLDLVEDALVILKEMNKRNQRIKNSAFR 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849166|ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338306|gb|EFH68723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/518 (59%), Positives = 401/518 (77%), Gaps = 8/518 (1%)

Query: 55  SLKCRGLPGNVCIDRVNEVD-QDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFV 113
           +L+C GL  +VCID V +VD   E SSE H   V   LR       +      SSDGP  
Sbjct: 44  NLRCHGLMTSVCIDNVADVDDHAERSSEFHHYGVGNNLR-------ARKQLGLSSDGPIT 96

Query: 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASK 173
           ENDE+TNN+IL N CS GKLTDA KL+++MAR NQ+P F  C NL+RGL RID+++KA  
Sbjct: 97  ENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMV 156

Query: 174 VLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233
           +L+IMVMSGGVPDTITYNM++G LCK+G IRSA+ LL++MS+SG  PDVITYNT++R MF
Sbjct: 157 ILRIMVMSGGVPDTITYNMIIGNLCKKGHIRSALVLLEDMSLSGSPPDVITYNTVIRCMF 216

Query: 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV 293
           D+G  +QAI FWKDQLR GCPPY+ITYT+L+E VC+ CG ARA++VL+DMA+EGC PDIV
Sbjct: 217 DHGNAEQAIRFWKDQLRNGCPPYMITYTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIV 276

Query: 294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM 353
           TYNSLVN++C++G  ++  LVI ++LS G+E N++TYNTLLHSL S   WD V++IL+IM
Sbjct: 277 TYNSLVNYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEILNIM 336

Query: 354 NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML 413
            + S+ PTV TYNILINGLCK  L+ RAI+ F QM+ + C PDIVTYNT+LGA+ KEGM+
Sbjct: 337 YQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAMSKEGMV 396

Query: 414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL 473
           ++A++LL LL  +SC P LITYN++IDGLA+KG M+KA+ LY  M++ GISPDDIT R+L
Sbjct: 397 DDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSL 456

Query: 474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY 533
           I+GFCRA+ VEEA  +LKE   RGN +R S YRLVI GLCK ++++MAI+V+E+M++S  
Sbjct: 457 IYGFCRANLVEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVEIMLTSGC 516

Query: 534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571
           KPD+T+++ IVK V + GM  EA +L +KL +WK+  +
Sbjct: 517 KPDETIYTAIVKGVEEMGMGSEAVQLQKKLTQWKLLRE 554

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223266|ref|NP_172337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75262899|sp|Q9FRS4.1|PPR22_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08610 gi|9802579|gb|AAF99781.1|AC003981_31 F22O13.9 [Arabidopsis thaliana] gi|332190196|gb|AEE28317.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/511 (58%), Positives = 391/511 (76%), Gaps = 5/511 (0%)

Query: 46  RDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL 105
           +++G  ++V  +C GL  +VCID VN  D  E SSE H   V   LR      K    S 
Sbjct: 38  QEIGLKKDVFFRCHGLLSSVCIDNVN--DHAERSSEFHHYGVGTNLRARVKPMKQFGLS- 94

Query: 106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI 165
             SDGP  ENDE+TNN+IL N CS GKLTDA KL+++MAR NQ+P F  C NL+RGL RI
Sbjct: 95  --SDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARI 152

Query: 166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225
           D+++KA  +L++MVMSGGVPDTITYNM++G LCK+G IR+A+ LL++MS+SG  PDVITY
Sbjct: 153 DQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITY 212

Query: 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285
           NT++R MFD G  +QAI FWKDQL+ GCPP++ITYT+L+E VC+ CG ARAIEVL+DMA+
Sbjct: 213 NTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAV 272

Query: 286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345
           EGC PDIVTYNSLVN++C++G  ++   VI ++LS G+E N++TYNTLLHSL S   WD 
Sbjct: 273 EGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDE 332

Query: 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405
           V++IL+IM + S+ PTV TYNILINGLCK  L+ RAI+ F QM+ + C PDIVTYNTVLG
Sbjct: 333 VEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLG 392

Query: 406 ALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465
           A+ KEGM+++A++LL LL  + C P LITYN++IDGLAKKG M+KA+ LY QM++ GI P
Sbjct: 393 AMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFP 452

Query: 466 DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525
           DDIT R+LI+GFCRA+ VEEA  +LKE   RGN +R S YRLVI GLCK K+++MAI+V+
Sbjct: 453 DDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVV 512

Query: 526 ELMISSRYKPDDTVFSTIVKKVADDGMTEEA 556
           E+M++   KPD+T+++ IVK V + GM  EA
Sbjct: 513 EIMLTGGCKPDETIYTAIVKGVEEMGMGSEA 543

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 288/524 (54%), Positives = 384/524 (73%), Gaps = 9/524 (1%)

Query: 56  LKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITK--KSHDPSLPSSDGPFV 113
           L+CR     V  DRV+EVD ++W  ES+     K++    +     S + S  S++G FV
Sbjct: 54  LRCR----TVLSDRVDEVDHEDWGFESNT---GKRVESSELVHLVTSLNSSTLSAEGQFV 106

Query: 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASK 173
            N E T+NKILQ+ CSRGKLT A++L+++MAR +QIP F  C NLIRGLIRI +++K  K
Sbjct: 107 RNGELTSNKILQSLCSRGKLTAAARLVEVMARMSQIPHFPSCTNLIRGLIRIGQVDKGCK 166

Query: 174 VLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF 233
           ++ +MVMSGGVPDTIT+N ++G LCKRG ++SA+  L+ MS+SGC PD  TYNTI+R +F
Sbjct: 167 IMNMMVMSGGVPDTITFNAVIGSLCKRGHLKSALEFLEGMSLSGCLPDAKTYNTIIRCIF 226

Query: 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV 293
           D G    A+ FWKDQLRKG PPYLITY +L+E VCK CG +RA+EVL+DMA EGC PDI 
Sbjct: 227 DKGDPNLAVSFWKDQLRKGFPPYLITYALLVELVCKHCGASRALEVLEDMAREGCCPDIN 286

Query: 294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM 353
            YNSLVNFS KQG Y D  LVI+NLLS GM+PN +TYN L+HSL   G  D VD IL IM
Sbjct: 287 MYNSLVNFSSKQGNYKDTALVISNLLSHGMQPNVVTYNILIHSLSLHGYSDVVDDILKIM 346

Query: 354 NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML 413
           NE S SPT+ TYNIL+N LCK G +DR+I+ + +MVS+NC PDIVTYNT+L ALCKEG +
Sbjct: 347 NETSISPTLVTYNILLNSLCKSGFLDRSISLYIKMVSENCSPDIVTYNTLLNALCKEGFI 406

Query: 414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL 473
           +E++QLLH L+G++CSP L+TYN +I+GLA+   ++ A  +YG+M+E GI PD ITHRTL
Sbjct: 407 DESIQLLHSLSGTNCSPGLVTYNIVINGLARMRSIKSAKEMYGEMVEKGIDPDYITHRTL 466

Query: 474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY 533
           +WG C+  Q EEAV++ K + + G K++  AY+ VI GLC+ KK+D AIQ L+LM+ ++ 
Sbjct: 467 VWGLCQVYQFEEAVEIFKVMHRIGQKIKGYAYKCVILGLCEQKKLDSAIQALDLMVKAQC 526

Query: 534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLLA 577
           KPD  ++ T++K VA++GM  EA  L Q+LIE K+ + G  ++ 
Sbjct: 527 KPDGKIYYTLLKSVANEGMVNEANDLHQRLIELKILKDGCLIVG 570

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/455 (57%), Positives = 336/455 (73%), Gaps = 9/455 (1%)

Query: 47  DLGAGRNV-SLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL 105
           DL +GR +  L+C+GL  +V ID+V++ D D+WSSE+ VL V +K R    TK    P  
Sbjct: 28  DLHSGRTLFPLQCKGLQKSVSIDKVDKNDHDDWSSETLVLDVGRKFREQMNTKNHVSPK- 86

Query: 106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI 165
              +GPFVEN+E+ NN+ILQ+ C++G+L DA +LID+MARR+QIP+F  C NLIRG I++
Sbjct: 87  SYIEGPFVENEEEINNEILQHLCNKGRLMDAPRLIDVMARRSQIPNFSCCTNLIRGFIKV 146

Query: 166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225
           D+I KA+++L+IMVMSGGVPD ITYNMMVGGLCKRG+++SAI LL++MS+SGC PDV+TY
Sbjct: 147 DQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTY 206

Query: 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285
           NTI+R MF N  F QA+ FWK+QLR+GCPPYLITYTILIE VCK CG  RA+EVL+DMAI
Sbjct: 207 NTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDMAI 266

Query: 286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345
           EGC PD+VTYNSLVNF+CKQGKY+DA L+I N+LS GMEPN+ITYNTLLHSL S G WD 
Sbjct: 267 EGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLWDE 326

Query: 346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405
           VD+IL +M E SH PTV TYN LINGLCK GLV+RAI+ F+QMV +NC PDIVTYNT+LG
Sbjct: 327 VDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYENCLPDIVTYNTLLG 386

Query: 406 ALCKE-------GMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM 458
           ALCKE           +A+++L  +           Y ++IDGL      + A+ +   M
Sbjct: 387 ALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVLEIM 446

Query: 459 MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEI 493
           + +   PD+  +  LI     A  +EEA +L +++
Sbjct: 447 ISSRCKPDEEIYSALINSLADAGMMEEANELRQKL 481

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	577
TAIR|locus:2025580	559	AT1G08610 [Arabidopsis thalian	0.902	0.932	0.574	3.1e-163
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.772	0.745	0.388	1.3e-84
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.759	0.727	0.324	2.1e-68
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.783	0.736	0.288	6.4e-60
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.774	0.710	0.289	4.5e-59
TAIR|locus:2203916	634	AT1G62590 [Arabidopsis thalian	0.774	0.705	0.284	1.9e-58
TAIR|locus:2015213	629	AT1G63150 [Arabidopsis thalian	0.779	0.715	0.284	4e-58
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.759	0.695	0.291	1.1e-57
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.894	0.684	0.296	4.6e-57
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.760	0.681	0.277	1.6e-56

TAIR|locus:2025580 AT1G08610 [Arabidopsis thaliana (taxid:3702)]

 Score = 1589 (564.4 bits), Expect = 3.1e-163, P = 3.1e-163
 Identities = 302/526 (57%), Positives = 393/526 (74%)

Query:    46 RDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL 105
             +++G  ++V  +C GL  +VCID VN  D  E SSE H   V   LR      K     L
Sbjct:    38 QEIGLKKDVFFRCHGLLSSVCIDNVN--DHAERSSEFHHYGVGTNLRARVKPMKQF--GL 93

Query:   106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI 165
              SSDGP  ENDE+TNN+IL N CS GKLTDA KL+++MAR NQ+P F  C NL+RGL RI
Sbjct:    94 -SSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARI 152

Query:   166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225
             D+++KA  +L++MVMSGGVPDTITYNM++G LCK+G IR+A+ LL++MS+SG  PDVITY
Sbjct:   153 DQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITY 212

Query:   226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285
             NT++R MFD G  +QAI FWKDQL+ GCPP++ITYT+L+E VC+ CG ARAIEVL+DMA+
Sbjct:   213 NTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAV 272

Query:   286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345
             EGC PDIVTYNSLVN++C++G  ++   VI ++LS G+E N++TYNTLLHSL S   WD 
Sbjct:   273 EGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDE 332

Query:   346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405
             V++IL+IM + S+ PTV TYNILINGLCK  L+ RAI+ F QM+ + C PDIVTYNTVLG
Sbjct:   333 VEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLG 392

Query:   406 ALCKEGMXXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465
             A+ KEGM             + C P LITYN++IDGLAKKG M+KA+ LY QM++ GI P
Sbjct:   393 AMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFP 452

Query:   466 DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL 525
             DDIT R+LI+GFCRA+ VEEA  +LKE   RGN +R S YRLVI GLCK K+++MAI+V+
Sbjct:   453 DDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVV 512

Query:   526 ELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK 571
             E+M++   KPD+T+++ IVK V + GM  EA +L +KL +WK+ ++
Sbjct:   513 EIMLTGGCKPDETIYTAIVKGVEEMGMGSEAVQLQKKLKQWKLLKE 558

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 175/450 (38%), Positives = 263/450 (58%)

Query:   107 SSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID 166
             S +  F   D ++NN + Q     G+L +  K ++ M     +PD   C  LIRG  R+ 
Sbjct:    93 SVNSSFALEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLG 151

Query:   167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYN 226
             +  KA+K+L+I+  SG VPD ITYN+M+ G CK G+I +A+++LD MSVS   PDV+TYN
Sbjct:   152 KTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVVTYN 208

Query:   227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE 286
             TILR++ D+GK KQA+      L++ C P +ITYTILIE  C+  G+  A+++LD+M   
Sbjct:   209 TILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDR 268

Query:   287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV 346
             GC+PD+VTYN LVN  CK+G+ D+A+  +N++ S G +PN IT+N +L S+ S G W   
Sbjct:   269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query:   347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA 406
             +K+L  M     SP+V T+NILIN LC+ GL+ RAI+   +M    CQP+ ++YN +L  
Sbjct:   329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHG 388

Query:   407 LCKEGMXXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD 466
              CKE                 C P ++TYNT++  L K G +E A+ +  Q+   G SP 
Sbjct:   389 FCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPV 448

Query:   467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526
              IT+ T+I G  +A +  +A+ LL E+  +  K     Y  ++ GL +  KVD AI+   
Sbjct:   449 LITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFH 508

Query:   527 LMISSRYKPDDTVFSTIVKKVADDGMTEEA 556
                    +P+   F++I+  +     T+ A
Sbjct:   509 EFERMGIRPNAVTFNSIMLGLCKSRQTDRA 538

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 145/447 (32%), Positives = 250/447 (55%)

Query:   122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN-LIRGLIRIDRIEKASKVLQIMVM 180
             K+++ F +   +  A ++++I+ +  Q PD  F  N LI G  +++RI+ A++VL  M  
Sbjct:   129 KLIKGFFTLRNIPKAVRVMEILEKFGQ-PDV-FAYNALINGFCKMNRIDDATRVLDRMRS 186

Query:   181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR-TMFDNGKFK 239
                 PDT+TYN+M+G LC RG++  A+ +L+++    C+P VITY  ++  TM + G   
Sbjct:   187 KDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGG-VD 245

Query:   240 QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV 299
             +A+    + L +G  P + TY  +I  +CK+  + RA E++ ++ ++GC PD+++YN L+
Sbjct:   246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305

Query:   300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS 359
                  QGK+++   ++  + S   +PN +TY+ L+ +L   G  +    +L +M E   +
Sbjct:   306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLT 365

Query:   360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMXXXXXXX 419
             P  ++Y+ LI   C+ G +D AI     M+S  C PDIV YNTVL  LCK G        
Sbjct:   366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query:   420 XXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR 479
                     CSP   +YNT+   L   G   +A+ +  +MM NGI PD+IT+ ++I   CR
Sbjct:   426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query:   480 ADQVEEAVDLLKEIGKRGNKMRNSA--YRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537
                V+EA +LL ++  R  +   S   Y +V+ G CK+ +++ AI VLE M+ +  +P++
Sbjct:   486 EGMVDEAFELLVDM--RSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNE 543

Query:   538 TVFSTIVKKVADDGMTEEAYKLWQKLI 564
             T ++ +++ +   G   EA +L   L+
Sbjct:   544 TTYTVLIEGIGFAGYRAEAMELANDLV 570

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 131/454 (28%), Positives = 240/454 (52%)

Query:   113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
             V ++  T N ++   C R +L+ A  ++  M +    P      +L+ G    +RI +A 
Sbjct:    96 VSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAV 155

Query:   173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
              ++  MV  G  PDT+T+  +V GL +  +   A+AL++ M V GC+PD++TY  ++  +
Sbjct:   156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGL 215

Query:   233 FDNGKFKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD 291
                G+   A+    +++ KG     ++ Y+ +I+ +CK   +  A+ +  +M  +G  PD
Sbjct:   216 CKRGEPDLALNLL-NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274

Query:   292 IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351
             + TY+SL++  C  G++ DA  +++++L R + PN +T+N+L+ +    G     +K+ D
Sbjct:   275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334

Query:   352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG 411
              M + S  P + TYN LING C +  +D A   F  MVSK+C PD+VTYNT++   CK  
Sbjct:   335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAK 394

Query:   412 MXXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHR 471
                         +        +TY TLI G  +    + A +++ QM+ +G+ P+ +T+ 
Sbjct:   395 KVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYN 454

Query:   472 TLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS 531
             TL+ G C+  ++E+A+ + + + K   +     Y ++  G+CK+ KV+    +   +   
Sbjct:   455 TLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLK 514

Query:   532 RYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
               KPD   ++T++      G+ EEAY L+ K+ E
Sbjct:   515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE 548

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 133/459 (28%), Positives = 244/459 (53%)

Query:   113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
             +  D  + N ++  FC R +L  A  ++  M +    PD     +L+ G     RI +A 
Sbjct:   111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAV 170

Query:   173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
              ++  M +    P+T+T+N ++ GL    +   A+AL+D M   GC+PD+ TY T++  +
Sbjct:   171 ALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGL 230

Query:   233 FDNGKFKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD 291
                G    A+   K ++ KG     ++ YT +I+ +C    +  A+ +  +M  +G  P+
Sbjct:   231 CKRGDIDLALSLLK-KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPN 289

Query:   292 IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351
             +VTYNSL+   C  G++ DA  ++++++ R + PN +T++ L+ +    G     +K+ D
Sbjct:   290 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query:   352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK-- 409
              M + S  P +FTY+ LING C +  +D A + F  M+SK+C P++VTYNT++   CK  
Sbjct:   350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query:   410 ---EGMXXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD 466
                EGM            G++     +TYNTLI GL + G  + A  ++ +M+ +G+ PD
Sbjct:   410 RVEEGMELFREMSQRGLVGNT-----VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query:   467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE 526
              IT+  L+ G C+  ++E+A+ + + + K   +     Y ++I G+CK+ KV+    +  
Sbjct:   465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 524

Query:   527 LMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
              +     KP+  +++T++      G+ EEA  L++++ E
Sbjct:   525 SLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKE 563

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 127/447 (28%), Positives = 229/447 (51%)

Query:   119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIM 178
             T N ++  FC R +++ A  L+  M +    P      +L+ G     RI  A  ++  M
Sbjct:   122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query:   179 VMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF 238
             V  G  PDTIT+  ++ GL    +   A+AL+D M   GC+P+++TY  ++  +   G  
Sbjct:   182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query:   239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL 298
               A+              ++ +  +I+ +CK   +  A+ +  +M  +G  P++VTY+SL
Sbjct:   242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301

Query:   299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH 358
             ++  C  G++ DA  ++++++ + + PN +T+N L+ +    G +   +K+ D M + S 
Sbjct:   302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSI 361

Query:   359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMXXXXXX 418
              P +FTYN L+NG C +  +D+A   F  MVSK+C PD+VTYNT++   CK         
Sbjct:   362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTE 421

Query:   419 XXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC 478
                  +        +TY TLI GL   G  + A  ++ QM+ +G+ PD +T+  L+ G C
Sbjct:   422 LFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLC 481

Query:   479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDT 538
                ++E+A+++   + K   K+    Y  +I G+CK+ KVD    +   +     KP+  
Sbjct:   482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVV 541

Query:   539 VFSTIVKKVADDGMTEEAYKLWQKLIE 565
              ++T++  +    + +EAY L +K+ E
Sbjct:   542 TYNTMISGLCSKRLLQEAYALLKKMKE 568

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 129/453 (28%), Positives = 229/453 (50%)

Query:   113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKAS 172
             + +D  T +  +  FC R +L+ A  ++  M +    PD     +L+ G     RI  A 
Sbjct:   114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAV 173

Query:   173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
              ++  MV  G  PDT T+  ++ GL    +   A+AL+D+M   GC+PD++TY T++  +
Sbjct:   174 ALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGL 233

Query:   233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI 292
                G    A+              ++ +  +I+ +CK   +  A+++  +M  +G  P++
Sbjct:   234 CKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNV 293

Query:   293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI 352
             VTYNSL+N  C  G++ DA  +++N+L + + PN +T+N L+ +    G     +K+ + 
Sbjct:   294 VTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEE 353

Query:   353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM 412
             M + S  P   TYN+LING C +  +D A   F  MVSK+C P+I TYNT++   CK   
Sbjct:   354 MIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKR 413

Query:   413 XXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT 472
                        +        +TY T+I G  + G  + A +++ QM+ N +  D +T+  
Sbjct:   414 VEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSI 473

Query:   473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR 532
             L+ G C   +++ A+ + K + K   ++    Y  +I G+CK+ KV  A    +L  S  
Sbjct:   474 LLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEA---WDLFCSLS 530

Query:   533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
              KPD   ++T++  +    + +EA  L++K+ E
Sbjct:   531 IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 131/449 (29%), Positives = 236/449 (52%)

Query:   123 ILQN-FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS 181
             IL N FC R +L+ A  ++  M +    PD     +L+ G    +RI  A  ++  MV  
Sbjct:   121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query:   182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQA 241
             G  PD+ T+N ++ GL +  +   A+AL+D M V GC+PD++TY  ++  +   G    A
Sbjct:   181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query:   242 IGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNF 301
             +   K   +    P ++ Y  +I+ +C    +  A+ +  +M  +G  P++VTYNSL+  
Sbjct:   241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query:   302 SCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPT 361
              C  G++ DA  ++++++ R + PN +T++ L+ +    G     +K+ D M + S  P 
Sbjct:   301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query:   362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK-----EGMXXXX 416
             +FTY+ LING C +  +D A + F  M+SK+C P++VTYNT++   CK     EGM    
Sbjct:   361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query:   417 XXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWG 476
                     G++     +TY TLI G  +    + A +++ QM+ +G+ PD +T+  L+ G
Sbjct:   421 EMSQRGLVGNT-----VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDG 475

Query:   477 FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD 536
              C   +VE A+ + + + +   +     Y ++I G+CK+ KV+    +   +     KP+
Sbjct:   476 LCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535

Query:   537 DTVFSTIVKKVADDGMTEEAYKLWQKLIE 565
                ++T++      G+ EEA  L++++ E
Sbjct:   536 VVTYTTMMSGFCRKGLKEEADALFREMKE 564

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 158/533 (29%), Positives = 246/533 (46%)

Query:    39 TQFYSQLRDLGAGRNVSLKCRGLPGNVCIDRVNEVDQDEWSSESHVLAVNKKLRGLTITK 98
             T FY+++ +L    N SLK         +  ++      W  +  V   N  ++ L    
Sbjct:   154 THFYNRMLNLLVDGN-SLK---------LVEISHAKMSVWGIKPDVSTFNVLIKALCRAH 203

Query:    99 KSHDPSLPSSDGPF--VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCI 156
             +     L   D P   +  DEKT   ++Q +   G L  A ++ + M         +  +
Sbjct:   204 QLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG-CSWSNVSV 262

Query:   157 NLI-RGLIRIDRIEKASKVLQIMVMSGGV-PDTITYNMMVGGLCKRGQIRSAIALLDEMS 214
             N+I  G  +  R+E A   +Q M    G  PD  T+N +V GLCK G ++ AI ++D M 
Sbjct:   263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322

Query:   215 VSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA 274
               G +PDV TYN+++  +   G+ K+A+      + + C P  +TY  LI  +CK+  + 
Sbjct:   323 QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query:   275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLL 334
              A E+   +  +G  PD+ T+NSL+   C    +  A+ +   + S+G EP+  TYN L+
Sbjct:   383 EATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLI 442

Query:   335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ 394
              SL S+G  D    +L  M  +  + +V TYN LI+G CK      A   F++M      
Sbjct:   443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502

Query:   395 PDIVTYNTVLGALCKEGMXXXXXXXXXXXNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL 454
              + VTYNT++  LCK                    P   TYN+L+    + G ++KA  +
Sbjct:   503 RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADI 562

Query:   455 YGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514
                M  NG  PD +T+ TLI G C+A +VE A  LL+ I  +G  +   AY  VI GL +
Sbjct:   563 VQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFR 622

Query:   515 SKKVDMAIQVLELMISSRYKPDDTVFSTIVKK--VADDGMTEEAYKLWQKLIE 565
              +K   AI +   M+     P D V   IV +      G   EA     +L+E
Sbjct:   623 KRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE 675

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 122/439 (27%), Positives = 224/439 (51%)

Query:   127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD 186
             FC   KL+ A   +  + +    PD      L+ GL    R+ +A +++  MV  G  P 
Sbjct:   133 FCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPT 192

Query:   187 TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWK 246
              IT N +V GLC  G++  A+ L+D M  +G +P+ +TY  +L  M  +G+   A+   +
Sbjct:   193 LITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLR 252

Query:   247 DQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG 306
                 +      + Y+I+I+ +CK   +  A  + ++M I+G   DI+TYN+L+   C  G
Sbjct:   253 KMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAG 312

Query:   307 KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYN 366
             ++DD   ++ +++ R + PN +T++ L+ S    G     D++L  M +   +P   TYN
Sbjct:   313 RWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYN 372

Query:   367 ILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMXXXXXXXXXXXNGS 426
              LI+G CK   ++ AI   + M+SK C PDI+T+N ++   CK              +  
Sbjct:   373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432

Query:   427 SCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEA 486
                   +TYNTL+ G  + G +E A  L+ +M+   + PD ++++ L+ G C   ++E+A
Sbjct:   433 GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492

Query:   487 VDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKK 546
             +++  +I K   ++    Y ++IHG+C + KVD A  +   +     K D   ++ ++ +
Sbjct:   493 LEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISE 552

Query:   547 VADDGMTEEAYKLWQKLIE 565
             +       +A  L++K+ E
Sbjct:   553 LCRKDSLSKADILFRKMTE 571

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FRS4	PPR22_ARATH	No assigned EC number	0.5890	0.8769	0.9051	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	577
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-28
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-20
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-17
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-17
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-11
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-09
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-07
pfam01535	31	pfam01535, PPR, PPR repeat	4e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	4e-05
pfam01535	31	pfam01535, PPR, PPR repeat	5e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  119 bits (300), Expect = 4e-28
 Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 5/350 (1%)

Query: 168 IEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT 227
           I+ A +VL+++  +G   D   Y  ++    K G++ +   +  EM  +G E +V T+  
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512

Query: 228 ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAIEVLDDMAIE 286
           ++      G+  +A G +     K   P  + +  LI   C Q G + RA +VL +M  E
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI-SACGQSGAVDRAFDVLAEMKAE 571

Query: 287 G--CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWD 344
                PD +T  +L+      G+ D A  V   +    ++     Y   ++S   +G WD
Sbjct: 572 THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631

Query: 345 AVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVL 404
               I D M +    P    ++ L++     G +D+A         +  +   V+Y++++
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

Query: 405 GALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS 464
           GA        +AL+L   +      P + T N LI  L +   + KA+ +  +M   G+ 
Sbjct: 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751

Query: 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514
           P+ IT+  L+    R D  +  +DLL +  + G K      R +  GLC 
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 94.6 bits (235), Expect = 4e-20
 Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 19/306 (6%)

Query: 150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIAL 209
            + H    LI G  R  ++ KA     IM      PD + +N ++    + G +  A  +
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564

Query: 210 LDEMSVSG--CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR----KGCPPYLITYTIL 263
           L EM       +PD IT   +++   + G+  +A   ++  +     KG P     YTI 
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPE---VYTIA 620

Query: 264 IEQVCKQCG-IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG 322
           +   C Q G    A+ + DDM  +G  PD V +++LV+ +   G  D A  ++ +   +G
Sbjct: 621 V-NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679

Query: 323 MEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS---PTVFTYNILINGLCKYGLVD 379
           ++  +++Y++L+ +  +   W    K L++  +       PTV T N LI  LC+   + 
Sbjct: 680 IKLGTVSYSSLMGACSNAKNW---KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736

Query: 380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLI 439
           +A+   ++M      P+ +TY+ +L A  ++   +  L LL         P L+    + 
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796

Query: 440 DGLAKK 445
            GL  +
Sbjct: 797 -GLCLR 801

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 91.5 bits (227), Expect = 3e-19
 Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 33/272 (12%)

Query: 290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKI 349
           P + T+N L++        D A+ V+  +   G++ +   Y TL+ +    G  DA+ ++
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409
              M  A     V T+  LI+G  + G V +A  ++  M SKN +PD V +N ++ A  +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT 469
            G ++ A  +L  +  +   P                                I PD IT
Sbjct: 555 SGAVDRAFDVLAEM-KAETHP--------------------------------IDPDHIT 581

Query: 470 HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529
              L+     A QV+ A ++ + I +   K     Y + ++   +    D A+ + + M 
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641

Query: 530 SSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQ 561
               KPD+  FS +V      G  ++A+++ Q
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 86/357 (24%), Positives = 150/357 (42%), Gaps = 48/357 (13%)

Query: 151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALL 210
           D   C +LI+  + +    +A KV   M       D +++  M+ G  K G    A+   
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETY 377

Query: 211 DEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ 270
             M      PD IT  ++L      G     +   +   RKG   Y++    LIE   K 
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437

Query: 271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY 330
             I +A+EV  ++       D++++ S++       +  +A++    +L   ++PNS+T 
Sbjct: 438 KCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492

Query: 331 NTLLHS---LGSRGCWDAV----------------DKILDI------MNEA-----SHSP 360
              L +   +G+  C   +                + +LD+      MN A     SH  
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552

Query: 361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLL 420
            V ++NIL+ G   +G    A+  FN+MV     PD VT+ ++L A  + GM+ + L+  
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612

Query: 421 HLLNGS-SCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWG 476
           H +    S +P L  Y  ++D L + G + +A     +M    I+PD       +WG
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPD-----PAVWG 661

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 67/314 (21%), Positives = 134/314 (42%), Gaps = 14/314 (4%)

Query: 260 YTILIEQVCKQCGIARAI-EVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL 318
           YT LI   C + G   A+ EV  +M   G   ++ T+ +L++   + G+   A      +
Sbjct: 475 YTTLI-STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533

Query: 319 LSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI---MNEASH--SPTVFTYNILINGLC 373
            S+ ++P+ + +N L+ + G  G   AVD+  D+   M   +H   P   T   L+    
Sbjct: 534 RSKNVKPDRVVFNALISACGQSG---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 374 KYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI 433
             G VDRA   +  +   N +     Y   + +  ++G  + AL +   +      P  +
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEI 493
            ++ L+D     G ++KA  +     + GI    +++ +L+     A   ++A++L ++I
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710

Query: 494 GKRGNKMRN--SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG 551
             +  K+R   S    +I  LC+  ++  A++VL  M      P+   +S ++       
Sbjct: 711 --KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768

Query: 552 MTEEAYKLWQKLIE 565
             +    L  +  E
Sbjct: 769 DADVGLDLLSQAKE 782

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 74.7 bits (185), Expect = 4e-17
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409
           P V TYN LI+G CK G V+ A+  FN+M  +  +P++ TY+ ++  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 105/471 (22%), Positives = 179/471 (38%), Gaps = 103/471 (21%)

Query: 89  KKLRGLTI----TKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMA 144
           K+ RGL++    +  +HD                  N  L+  CS G+L  A KL++ M 
Sbjct: 36  KRSRGLSVAASSSSSTHDS-----------------NSQLRALCSHGQLEQALKLLESMQ 78

Query: 145 RRNQIPDFHFCINLIRGLIRIDR-IEKASKV-------------------LQIMVMSGGV 184
                 D    + L R L    R +E+ S+V                   L + V  G +
Sbjct: 79  ELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137

Query: 185 ------------PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM 232
                        D  ++N++VGG  K G    A+ L   M  +G  PDV T+  +LRT 
Sbjct: 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTC 197

Query: 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAIEVLDDMAIEGCSPD 291
                  +        +R G    +     LI    K CG +  A  V D M       D
Sbjct: 198 GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-CGDVVSARLVFDRMPRR----D 252

Query: 292 IVTYNSLV-----NFSCKQG----------KYDDAVLVINNLLS---------------- 320
            +++N+++     N  C +G            D  ++ I +++S                
Sbjct: 253 CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312

Query: 321 ----RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG 376
                G   +    N+L+    S G W   +K+   M     +    ++  +I+G  K G
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG 368

Query: 377 LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN 436
           L D+A+ ++  M   N  PD +T  +VL A    G L+  ++L  L         ++  N
Sbjct: 369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428

Query: 437 TLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV 487
            LI+  +K  C++KA+ ++  + E     D I+  ++I G    ++  EA+
Sbjct: 429 ALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEAL 475

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR 479
           P ++TYNTLIDG  KKG +E+A+ L+ +M + GI P+  T+  LI G C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 18/46 (39%), Positives = 31/46 (67%)

Query: 185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR 230
           PD +TYN ++ G CK+G++  A+ L +EM   G +P+V TY+ ++ 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.1 bits (160), Expect = 1e-13
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 325 PNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK 374
           P+ +TYNTL+     +G  +   K+ + M +    P V+TY+ILI+GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 395 PDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK 444
           PD+VTYNT++   CK+G + EAL+L + +      P + TY+ LIDGL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 73/316 (23%), Positives = 138/316 (43%), Gaps = 20/316 (6%)

Query: 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG 217
           L+   I +  I     V   +  SG  PD    N ++    K G +  A  L DEM    
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP--- 185

Query: 218 CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG--CPPYLITYTILIEQVCKQCGIAR 275
            E ++ ++ TI+  + D G +++A   +++    G    P   T+ +++       G AR
Sbjct: 186 -ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR--TFVVMLRASAG-LGSAR 241

Query: 276 AIEVLDDMAIE-GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLL 334
           A + L    ++ G   D     +L++   K G  +DA  V + +     E  ++ +N++L
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSML 297

Query: 335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ 394
                 G  +    +   M ++  S   FT++I+I    +  L++ A  +   ++     
Sbjct: 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357

Query: 395 PDIVTYNTVLGAL-CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMV 453
            DIV  NT L  L  K G + +A  +   +   +    LI++N LI G    G   KA+ 
Sbjct: 358 LDIVA-NTALVDLYSKWGRMEDARNVFDRMPRKN----LISWNALIAGYGNHGRGTKAVE 412

Query: 454 LYGQMMENGISPDDIT 469
           ++ +M+  G++P+ +T
Sbjct: 413 MFERMIAEGVAPNHVT 428

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query: 290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL 337
           PD+VTYN+L++  CK+GK ++A+ + N +  RG++PN  TY+ L+  L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 71/405 (17%), Positives = 154/405 (38%), Gaps = 47/405 (11%)

Query: 191 NMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250
           N ++    K G + SA  + D M       D I++N ++   F+NG+  + +  +     
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRE 281

Query: 251 KGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE-GCSPDIVTYNSLVNFSCKQGKYD 309
               P L+T T +I   C+  G  R    +    ++ G + D+   NSL+      G + 
Sbjct: 282 LSVDPDLMTITSVI-SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340

Query: 310 DAVLVINNLLSR-------------------------------GMEPNSITYNTLLHSLG 338
           +A  V + + ++                                + P+ IT  ++L +  
Sbjct: 341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400

Query: 339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV 398
             G  D   K+ ++         V   N LI    K   +D+A+  F+ +  K    D++
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVI 456

Query: 399 TYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM 458
           ++ +++  L       EAL     +  +   P  +T    +   A+ G +     ++  +
Sbjct: 457 SWTSIIAGLRLNNRCFEALIFFRQMLLTL-KPNSVTLIAALSACARIGALMCGKEIHAHV 515

Query: 459 MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV 518
           +  GI  D      L+  + R  ++  A +         ++    ++ +++ G     K 
Sbjct: 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKG 570

Query: 519 DMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL 563
            MA+++   M+ S   PD+  F +++   +  GM  +  + +  +
Sbjct: 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 58.6 bits (143), Expect = 2e-11
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 220 PDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK 269
           PDV+TYNT++      GK ++A+  + +  ++G  P + TY+ILI+ +CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 65.7 bits (160), Expect = 3e-11
 Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 13/218 (5%)

Query: 168 IEKASKVLQIMVMSGGVPD--TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY 225
           IE A  V        G+P+  T+ +N M+ G    G    A+ L  EM  SG   D  T+
Sbjct: 275 IEDARCVFD------GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328

Query: 226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI 285
           + ++R        + A       +R G P  ++  T L++   K   +  A  V D M  
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388

Query: 286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA 345
           +    +++++N+L+      G+   AV +   +++ G+ PN +T+  +L +    G  + 
Sbjct: 389 K----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ 444

Query: 346 VDKILDIMNEASH-SPTVFTYNILINGLCKYGLVDRAI 382
             +I   M+E     P    Y  +I  L + GL+D A 
Sbjct: 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 74/341 (21%), Positives = 140/341 (41%), Gaps = 44/341 (12%)

Query: 114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASK 173
           E D+   N++L      G L DA +L D M  RN          +I GL+      +A  
Sbjct: 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWG----TIIGGLVDAGNYREAFA 210

Query: 174 VLQIMVMSGGVPDTITYNMMVGGLCKRGQIRS-------------------AIALLDEMS 214
           + + M   G   +  T+ +M+      G  R+                   + AL+D  S
Sbjct: 211 LFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270

Query: 215 VSG----------CEPD--VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI 262
             G            P+   + +N++L     +G  ++A+  + +    G      T++I
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330

Query: 263 LIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG 322
           +I    +   +  A +    +   G   DIV   +LV+   K G+ +DA  V + +  + 
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK- 389

Query: 323 MEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY-GLVDRA 381
              N I++N L+   G+ G      ++ + M     +P   T+  +++  C+Y GL ++ 
Sbjct: 390 ---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQG 445

Query: 382 INSFNQMVSKN--CQPDIVTYNTVLGALCKEGMLNEALQLL 420
              F  M S+N   +P  + Y  ++  L +EG+L+EA  ++
Sbjct: 446 WEIFQSM-SENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 64.9 bits (158), Expect = 7e-11
 Identities = 79/392 (20%), Positives = 152/392 (38%), Gaps = 49/392 (12%)

Query: 131 GKLTDASKLIDIMARRNQIPDFHFCIN---LIRGLIRIDRIEKASKVLQIMVMSGGVPDT 187
           G +  A  + D M RR+       CI+   +I G        +  ++   M      PD 
Sbjct: 236 GDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288

Query: 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKD 247
           +T   ++      G  R    +   +  +G   DV   N++++     G + +A   +  
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348

Query: 248 QLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK 307
              K      +++T +I    K     +A+E    M  +  SPD +T  S+++     G 
Sbjct: 349 METKD----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404

Query: 308 YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNI 367
            D  V +      +G+    +  N L+       C   +DK L++ +       V ++  
Sbjct: 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKC---IDKALEVFHNIPEK-DVISWTS 460

Query: 368 LINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK------------------ 409
           +I GL        A+  F QM+    +P+ VT    L A  +                  
Sbjct: 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519

Query: 410 ---EGMLNEALQLLHLLNG---------SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQ 457
              +G L  AL  L++  G         +S    ++++N L+ G    G    A+ L+ +
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579

Query: 458 MMENGISPDDITHRTLIWGFCRADQVEEAVDL 489
           M+E+G++PD++T  +L+    R+  V + ++ 
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 68/380 (17%), Positives = 144/380 (37%), Gaps = 53/380 (13%)

Query: 189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQ 248
           TY+ +V        IR   A+   +  SG EPD    N +L                   
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV--------------- 169

Query: 249 LRKGCPPYLITYTILIEQVCKQCG-IARAIEVLDDMAIEGCSPD--IVTYNSLVNFSCKQ 305
                                +CG +  A  + D+M      P+  + ++ +++      
Sbjct: 170 ---------------------KCGMLIDARRLFDEM------PERNLASWGTIIGGLVDA 202

Query: 306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTY 365
           G Y +A  +   +   G +    T+  +L +    G   A  ++   + +       F  
Sbjct: 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS 262

Query: 366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG 425
             LI+   K G ++ A   F+ M  K      V +N++L      G   EAL L + +  
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE 485
           S  S    T++ +I   ++   +E A   +  ++  G   D + +  L+  + +  ++E+
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378

Query: 486 AVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545
           A ++   + ++     N+    +I G     +   A+++ E MI+    P+   F  ++ 
Sbjct: 379 ARNVFDRMPRKNLISWNA----LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434

Query: 546 KVADDGMTEEAYKLWQKLIE 565
                G++E+ ++++Q + E
Sbjct: 435 ACRYSGLSEQGWEIFQSMSE 454

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.7 bits (128), Expect = 2e-09
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 359 SPTVFTYNILINGLCKYGLVDRAINSFNQMV 389
            P V TYN LI+GLC+ G VD A+   ++M 
Sbjct: 4   KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD 467
           +TYNTLIDGL K G +E+A+ L+ +M E GI PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 49.3 bits (119), Expect = 3e-08
 Identities = 15/30 (50%), Positives = 24/30 (80%)

Query: 391 KNCQPDIVTYNTVLGALCKEGMLNEALQLL 420
           K  +PD+VTYNT++  LC+ G ++EA++LL
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 49.3 bits (119), Expect = 3e-08
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS 214
            G  PD +TYN ++ GLC+ G++  A+ LLDEM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 15/47 (31%), Positives = 29/47 (61%)

Query: 258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK 304
           +TY  LI+  CK+  +  A+++ ++M   G  P++ TY+ L++  CK
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.2 bits (116), Expect = 1e-07
 Identities = 15/42 (35%), Positives = 25/42 (59%)

Query: 158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK 199
           LI G  +  ++E+A K+   M   G  P+  TY++++ GLCK
Sbjct: 9   LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV 222
           +TYN ++ GLCK G++  A+ L  EM   G EPDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK 514
           PD +T+ TLI G+C+  +VEEA+ L  E+ KRG K     Y ++I GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 69/321 (21%), Positives = 119/321 (37%), Gaps = 45/321 (14%)

Query: 291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKIL 350
              TY++LV              V  ++ S G EP+    N +L      G      ++ 
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181

Query: 351 DIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE 410
           D M E +    + ++  +I GL   G    A   F +M       +  T+  +L A    
Sbjct: 182 DEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237

Query: 411 GMLNEALQLLH---LLNGS------SC------SPC-----------------LITYNTL 438
           G    A Q LH   L  G       SC      S C                  + +N++
Sbjct: 238 GSA-RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296

Query: 439 IDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN 498
           + G A  G  E+A+ LY +M ++G+S D  T   +I  F R   +E A      + + G 
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356

Query: 499 KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFS--TIVKKVADDGMTEEA 556
            +   A   ++    K  +++ A  V + M      P   + S   ++    + G   +A
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKA 410

Query: 557 YKLWQKLIEWKVFEKGTTLLA 577
            ++++++I   V     T LA
Sbjct: 411 VEMFERMIAEGVAPNHVTFLA 431

Length = 697

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGI 463
           +TYN+LI G  K G +E+A+ L+ +M E G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 287 GCSPDIVTYNSLVNFSCKQGKYDDAV 312
           G  PD+VTYN+L++  C+ G+ D+AV
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAV 27

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI 397
            TYN LI+GLCK G V+ A+  F +M  +  +PD+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 30/280 (10%)

Query: 291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKIL 350
           D+ ++N LV    K G +D+A+ + + +L  G+ P+  T+  +L + G            
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL------- 203

Query: 351 DIMNEASHSPTV-FTY-------NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT 402
                  H+  V F +       N LI    K G V  A   F++M  +    D +++N 
Sbjct: 204 -ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNA 258

Query: 403 VLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENG 462
           ++    + G   E L+L   +   S  P L+T  ++I      G       ++G +++ G
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318

Query: 463 ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS---AYRLVIHGLCKSKKVD 519
            + D     +LI       Q+  ++    E  K  ++M      ++  +I G  K+   D
Sbjct: 319 FAVDVSVCNSLI-------QMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371

Query: 520 MAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKL 559
            A++   LM      PD+   ++++   A  G  +   KL
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 428 CSPCLITYNTLIDGLAKKGCMEKAMVLYGQM 458
             P ++TYNTLIDGL + G +++A+ L  +M
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 363 FTYNILINGLCKYGLVDRAINSFNQMVSKNC 393
            TYN LI+G CK G ++ A+  F +M  K  
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK 545
            Y  +I G CK  KV+ A+++   M     KP+   +S ++ 
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 461 NGISPDDITHRTLIWGFCRADQVEEAVDLLKE 492
            G+ PD +T+ TLI G CRA +V+EAV+LL E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQP 395
           + TYN L+  L K G  D A+    +M +   +P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGC 218
           +TYN ++ G CK G++  A+ L  EM   G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD 537
            Y  +I GLCK+ +V+ A+++ + M     +PD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.3 bits (88), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 251 KGCPPYLITYTILIEQVCKQCGIARAIEVLDDM 283
           KG  P ++TY  LI+ +C+   +  A+E+LD+M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP 430
           VTYNT++  LCK G + EAL+L   +      P
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.8 bits (96), Expect = 6e-04
 Identities = 40/261 (15%), Positives = 91/261 (34%), Gaps = 5/261 (1%)

Query: 273 IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSIT--Y 330
           +  A+ +L +   +  +  +    + +      G+  +A+ ++   L      +      
Sbjct: 4   LLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLL 63

Query: 331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVS 390
              L  L      +A++ +   +              L   L   G  + A+    + ++
Sbjct: 64  LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123

Query: 391 KNCQPDIVTYNTVLGALCKEGMLNEALQLLH--LLNGSSCSPCLITYNTLIDGLAKKGCM 448
            +  PD+      LGAL + G   EAL+L    L      +        L   L   G  
Sbjct: 124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY 183

Query: 449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLV 508
           E+A+ L  + ++     D      L   + +  + EEA++  ++  +  +     A   +
Sbjct: 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNL 242

Query: 509 IHGLCKSKKVDMAIQVLELMI 529
              L +  + + A++ LE  +
Sbjct: 243 ALLLLELGRYEEALEALEKAL 263

Length = 291

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query: 293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS 327
           VTYN+L++  CK G+ ++A+ +   +  RG+EP+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 8e-04
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 216 SGCEPDVITYNTILRTMFDNGKFKQAIGF 244
            G +PDV+TYNT++  +   G+  +A+  
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.4 bits (95), Expect = 8e-04
 Identities = 32/191 (16%), Positives = 65/191 (34%), Gaps = 4/191 (2%)

Query: 234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAIEVLDDMAIEGCSP-D 291
             G+  +A+   ++ L       L    +L+     + G +  A+E+L+        P  
Sbjct: 35  LLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL 94

Query: 292 IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD 351
                +L       GKY++A+ ++   L+   +P+       L +L   G ++   ++ +
Sbjct: 95  AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYE 154

Query: 352 IMNEASHSPT--VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK 409
              E              L   L   G  + A+    + +  N   D      +     K
Sbjct: 155 KALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214

Query: 410 EGMLNEALQLL 420
            G   EAL+  
Sbjct: 215 LGKYEEALEYY 225

Length = 291

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSC 428
           VTYN+++   CK G L EAL+L   +     
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 187 TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEP 220
             TYN ++  L K G    A+A+L+EM  SG +P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465
           L TYN L+  LAK G  + A+ +  +M  +G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 52/257 (20%), Positives = 100/257 (38%), Gaps = 24/257 (9%)

Query: 73  VDQDEWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGK 132
           V  D+++  S ++ +  +L  L   K++H   + +        D   N  ++  +   G+
Sbjct: 321 VSIDQFTF-SIMIRIFSRLALLEHAKQAHAGLIRTG----FPLDIVANTALVDLYSKWGR 375

Query: 133 LTDASKLIDIMARRNQIPDFHFCIN-LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN 191
           + DA  + D M R+N I       N LI G     R  KA ++ + M+  G  P+ +T+ 
Sbjct: 376 MEDARNVFDRMPRKNLIS-----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430

Query: 192 MMVGGLCKRGQIRSAIALLDEMS-VSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR 250
            ++      G       +   MS     +P  + Y  ++  +   G   +A    +    
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--- 487

Query: 251 KGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE---GCSPD-IVTYNSLVNFSCKQG 306
              P        +   +   C I + +E L  +A E   G  P+ +  Y  L+N     G
Sbjct: 488 --AP--FKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542

Query: 307 KYDDAVLVINNLLSRGM 323
           +  +A  V+  L  +G+
Sbjct: 543 RQAEAAKVVETLKRKGL 559

Length = 697

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	577
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
PRK14574	822	hmsH outer membrane protein; Provisional	99.86
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.86
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG2076	895	consensus RNA polymerase III transcription factor	99.75
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.72
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.7
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.64
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.63
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.5
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.47
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.44
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.41
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.41
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.4
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.37
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.36
PRK12370	553	invasion protein regulator; Provisional	99.35
PRK12370	553	invasion protein regulator; Provisional	99.34
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.32
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.31
KOG1129	478	consensus TPR repeat-containing protein [General f	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.28
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.25
PF13041	50	PPR_2: PPR repeat family	99.25
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.24
PF13041	50	PPR_2: PPR repeat family	99.24
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.22
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.22
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.21
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.11
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.09
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.08
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.08
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.07
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.01
PRK04841	903	transcriptional regulator MalT; Provisional	98.98
PRK04841	903	transcriptional regulator MalT; Provisional	98.96
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.94
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.92
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.92
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.84
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.83
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.83
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.82
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.78
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.75
PLN02789	320	farnesyltranstransferase	98.71
PLN02789	320	farnesyltranstransferase	98.69
PF12854	34	PPR_1: PPR repeat	98.66
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.64
PF12854	34	PPR_1: PPR repeat	98.64
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.63
KOG1125	579	consensus TPR repeat-containing protein [General f	98.63
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.62
KOG1125	579	consensus TPR repeat-containing protein [General f	98.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.53
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.46
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.45
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.44
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.43
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.43
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
PRK15359	144	type III secretion system chaperone protein SscB;	98.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.39
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.38
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.37
PRK15359	144	type III secretion system chaperone protein SscB;	98.32
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.27
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.16
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.07
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.05
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.04
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.03
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.01
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.93
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.89
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.78
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.71
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.69
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.68
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.63
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.62
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.62
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.59
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.59
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.52
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.48
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.46
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.46
PF12688	120	TPR_5: Tetratrico peptide repeat	97.46
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.44
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.38
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.35
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.34
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.31
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.3
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.27
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.25
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.22
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.19
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.16
KOG0553	304	consensus TPR repeat-containing protein [General f	97.15
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.12
KOG0553	304	consensus TPR repeat-containing protein [General f	97.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.05
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.05
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.04
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.04
PF12688	120	TPR_5: Tetratrico peptide repeat	97.01
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.99
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.95
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.94
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.91
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.87
PRK10803	263	tol-pal system protein YbgF; Provisional	96.86
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.82
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.77
PRK10803	263	tol-pal system protein YbgF; Provisional	96.73
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.73
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.58
PF13371	73	TPR_9: Tetratricopeptide repeat	96.47
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.32
PF13371	73	TPR_9: Tetratricopeptide repeat	96.31
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.29
KOG1258	577	consensus mRNA processing protein [RNA processing	96.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.21
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.11
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.06
PRK15331	165	chaperone protein SicA; Provisional	96.02
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.94
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.88
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.85
PRK15331	165	chaperone protein SicA; Provisional	95.85
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.56
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.53
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.49
KOG4555	175	consensus TPR repeat-containing protein [Function	95.38
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.32
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.27
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.23
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.21
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.2
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.09
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.06
KOG3941	406	consensus Intermediate in Toll signal transduction	95.06
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.0
PF13512	142	TPR_18: Tetratricopeptide repeat	94.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.64
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.6
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.57
KOG3941	406	consensus Intermediate in Toll signal transduction	94.49
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.47
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.18
KOG4555	175	consensus TPR repeat-containing protein [Function	94.16
KOG1585	308	consensus Protein required for fusion of vesicles	94.13
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	93.97
PF13512	142	TPR_18: Tetratricopeptide repeat	93.89
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.81
PRK11906	458	transcriptional regulator; Provisional	93.65
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.62
PF13428	44	TPR_14: Tetratricopeptide repeat	93.57
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.07
PRK11906	458	transcriptional regulator; Provisional	93.06
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.98
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.94
PF13428	44	TPR_14: Tetratricopeptide repeat	92.87
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.77
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.64
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.32
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	92.27
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.24
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.23
KOG1258	577	consensus mRNA processing protein [RNA processing	92.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.43
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.42
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.42
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.2
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.65
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	90.57
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.46
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.31
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.29
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.29
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.18
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	90.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.29
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.19
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.19
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.15
KOG1585	308	consensus Protein required for fusion of vesicles	89.02
COG3947	361	Response regulator containing CheY-like receiver a	88.64
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.55
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.19
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.17
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.04
PRK09687	280	putative lyase; Provisional	87.64
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	87.52
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.42
PF13431	34	TPR_17: Tetratricopeptide repeat	87.4
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.06
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.89
PF13431	34	TPR_17: Tetratricopeptide repeat	86.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.78
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.23
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.99
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.54
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.52
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	85.27
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.8
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	84.79
KOG4234	271	consensus TPR repeat-containing protein [General f	84.52
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.53
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	83.2
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.92
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	81.85
PRK09687	280	putative lyase; Provisional	81.77
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	81.36
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.35
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.96

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.6e-68  Score=572.23  Aligned_cols=458  Identities=19%  Similarity=0.266  Sum_probs=440.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      .||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus       434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL  513 (1060)
T PLN03218        434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL  513 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcC
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR--KGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      |.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G  593 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG  593 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999986  578999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      ++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus       594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105          352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC  431 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~  431 (577)
                      .|.+.|..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||
T Consensus       674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd  753 (1060)
T PLN03218        674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN  753 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----A-------------------DQVEEAVD  488 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~  488 (577)
                      ..||+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.+    +                   +..++|..
T Consensus       754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~  833 (1060)
T PLN03218        754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM  833 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence            999999999999999999999999999999999999999999876432    1                   12467999


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          489 LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       489 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      +|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+.  .++|..++++|.+.|+
T Consensus       834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi  911 (1060)
T PLN03218        834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV  911 (1060)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence            99999999999999999999999889999999999999998778899999999999998443  4789999999999999


Q ss_pred             CCCcc
Q 008105          569 FEKGT  573 (577)
Q Consensus       569 ~~~~~  573 (577)
                      .|+..
T Consensus       912 ~p~~~  916 (1060)
T PLN03218        912 VPSVS  916 (1060)
T ss_pred             CCCcc
Confidence            99875

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.6e-67  Score=564.53  Aligned_cols=459  Identities=19%  Similarity=0.309  Sum_probs=441.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQ-IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      ..++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++..|.+.|.+++|.++|+.|.    .||..+|+
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn  441 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFN  441 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHH
Confidence            346788899999999999999999999999999996 4677788889999999999999999999997    39999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      .++.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus       442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS--RGMEPNSITYNTLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  349 (577)
                      ++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|++++.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986  68899999999999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008105          350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS  429 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  429 (577)
                      |+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI  509 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li  509 (577)
                      |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHHc
Q 008105          510 HGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD-----------------------DGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~  566 (577)
                      .+|++.|++++|.+++++|.+.|+.||..+|++++..|.+                       .+..++|..+|++|.+.
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~  841 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA  841 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999876542                       12357899999999999


Q ss_pred             CCCCCcccc
Q 008105          567 KVFEKGTTL  575 (577)
Q Consensus       567 ~~~~~~~~~  575 (577)
                      |+.|+..|+
T Consensus       842 Gi~Pd~~T~  850 (1060)
T PLN03218        842 GTLPTMEVL  850 (1060)
T ss_pred             CCCCCHHHH
Confidence            999998765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.6e-66  Score=562.92  Aligned_cols=506  Identities=16%  Similarity=0.192  Sum_probs=451.9

Q ss_pred             hHHHHHHHHhhCCCCccccc------cCCCCc----ceecccc--CcCCCCCcchhHHHHHHHHHhhhhhccccCCCCCC
Q 008105           38 RTQFYSQLRDLGAGRNVSLK------CRGLPG----NVCIDRV--NEVDQDEWSSESHVLAVNKKLRGLTITKKSHDPSL  105 (577)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (577)
                      -..+|.+|...|+.|+.+++      |.....    ......+  .+..++...++..+..+++. +....+...    +
T Consensus       171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~-g~~~~A~~l----f  245 (857)
T PLN03077        171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-GDVVSARLV----F  245 (857)
T ss_pred             HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC-CCHHHHHHH----H
Confidence            45678999999999998753      322221    1111111  24556777777777666552 222222221    2


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008105          106 PSSDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP  185 (577)
Q Consensus       106 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~  185 (577)
                      ..|    ..||+++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.|
T Consensus       246 ~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~  321 (857)
T PLN03077        246 DRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV  321 (857)
T ss_pred             hcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence            223    4589999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE  265 (577)
Q Consensus       186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  265 (577)
                      |..+||+|+.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.
T Consensus       322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~  397 (857)
T PLN03077        322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS  397 (857)
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence            99999999999999999999999999997    68999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 008105          266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA  345 (577)
Q Consensus       266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  345 (577)
                      +|++.|++++|.++++.|.+.|+.|+..+|++|+.+|++.|++++|.++|++|.    .+|..+|++++.+|++.|+.++
T Consensus       398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~e  473 (857)
T PLN03077        398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFE  473 (857)
T ss_pred             HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999999999997    4688999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105          346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG  425 (577)
Q Consensus       346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  425 (577)
                      |..+|++|.. +.+||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++++|++.|++++|.++|+.+  
T Consensus       474 A~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--  550 (857)
T PLN03077        474 ALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--  550 (857)
T ss_pred             HHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence            9999999986 5899999999999999999999999999999999999999999999999999999999999999987  


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCCccHHH
Q 008105          426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG-KRGNKMRNSA  504 (577)
Q Consensus       426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~  504 (577)
                         .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+
T Consensus       551 ---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~  627 (857)
T PLN03077        551 ---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH  627 (857)
T ss_pred             ---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence               678999999999999999999999999999999999999999999999999999999999999998 6899999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          505 YRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       505 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      |++++++|++.|++++|.+++++|   ++.||..+|.+|+.+|...|+.+.|+...+++.+..+.
T Consensus       628 y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~  689 (857)
T PLN03077        628 YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN  689 (857)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence            999999999999999999999999   68999999999999887777777777776666664443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.4e-65  Score=558.48  Aligned_cols=441  Identities=18%  Similarity=0.214  Sum_probs=267.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          112 FVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       112 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      |+.||+.++|+||.+|++.|++++|.++|++|.+    ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus       217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~  292 (857)
T PLN03077        217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT  292 (857)
T ss_pred             CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHH
Confidence            3444444444444444555555555555544432    344445555555555555555555555554444445555555


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      .++.++++.|+++.|.+++..|.+.|+.||..+|++++.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|
T Consensus       293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g  368 (857)
T PLN03077        293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNG  368 (857)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCC
Confidence            5555555555555555555555544444555555555555555555555555554442    234444555555555555


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      ++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..++++|+++|++.|++++|.++|+
T Consensus       369 ~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~  448 (857)
T PLN03077        369 LPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH  448 (857)
T ss_pred             CHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555544455555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105          352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC  431 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~  431 (577)
                      .|.+    +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|.++.+.+++..+.+.|+.++
T Consensus       449 ~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        449 NIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             hCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence            4432    3444555555555555555555555555543 2455555555555555555555555555555555555556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG  511 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  511 (577)
                      ..++++|+++|++.|++++|.++|+++     .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus       524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a  598 (857)
T PLN03077        524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA  598 (857)
T ss_pred             ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence            666666666666777777777776665     478888999999999999999999999999988899999999999999


Q ss_pred             HHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc
Q 008105          512 LCKSKKVDMAIQVLELMI-SSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGT  573 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  573 (577)
                      |++.|++++|.++|++|. +.|+.|+..+|++++++|.+.|++++|.+++++|.   +.|+..
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~  658 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPA  658 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHH
Confidence            999999999999999998 57889999999999999999999999999988873   566654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.4e-63  Score=528.20  Aligned_cols=449  Identities=15%  Similarity=0.220  Sum_probs=404.3

Q ss_pred             CCCCCC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008105          106 PSSDGP-FVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV  184 (577)
Q Consensus       106 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~  184 (577)
                      ..|... ++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .
T Consensus       111 ~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~  186 (697)
T PLN03081        111 EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----E  186 (697)
T ss_pred             HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----C
Confidence            344433 46789999999999999999999999999999999999999999999999999999999999999986    5


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105          185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILI  264 (577)
Q Consensus       185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  264 (577)
                      ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|++|+
T Consensus       187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li  266 (697)
T PLN03081        187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI  266 (697)
T ss_pred             CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence            78899999999999999999999999999999989999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHH
Q 008105          265 EQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWD  344 (577)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~  344 (577)
                      .+|++.|++++|.++|++|.    .+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus       267 ~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        267 DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE  342 (697)
T ss_pred             HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence            99999999999999999986    46889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 008105          345 AVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLN  424 (577)
Q Consensus       345 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  424 (577)
                      +|.+++..|.+.|.+||..+|+.|+++|++.|++++|.++|++|.    .||..+|+++|.+|++.|+.++|.++|++|.
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~  418 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMI  418 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986    4688999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105          425 GSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME-NGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS  503 (577)
Q Consensus       425 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  503 (577)
                      +.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|   +..|+..
T Consensus       419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~  495 (697)
T PLN03081        419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN  495 (697)
T ss_pred             HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH
Confidence            999999999999999999999999999999999975 689999999999999999999999999998766   4678999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK  571 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  571 (577)
                      +|+.++.+|...|+++.|..+++++.  ++.|+ ..+|..|++.|.+.|++++|.+++++|.+.|+...
T Consensus       496 ~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        496 MWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999887  45564 67899999999999999999999999999998644

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.8e-63  Score=526.30  Aligned_cols=442  Identities=18%  Similarity=0.272  Sum_probs=427.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      ..++..+|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+||
T Consensus        83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            45677899999999999999999999999998865 68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      .++.+|++.|++++|.++|++|.    .||..+|++++.+|++.|++++|+++|++|.+.|..|+..+|+.++.++++.|
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence            99999999999999999999998    68999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      ..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.    .+|..+|++++.+|++.|+.++|.++|+
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~  314 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY  314 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999997    4699999999999999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105          352 IMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC  431 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~  431 (577)
                      +|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++++++|++.|++++|.++|++|.    .||
T Consensus       315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d  390 (697)
T PLN03081        315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN  390 (697)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996    468


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCccHHHHHHHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIH  510 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~  510 (577)
                      ..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+++++
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~  470 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE  470 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999986 699999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          511 GLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       511 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      +|++.|++++|.+++++|   ++.|+..+|++|+.+|...|+++.|..+++++.+.++.
T Consensus       471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE  526 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence            999999999999999987   88999999999999999999999999999999876554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.5e-29  Score=276.90  Aligned_cols=436  Identities=13%  Similarity=0.135  Sum_probs=307.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      +++.+|..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+.
T Consensus       463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  540 (899)
T TIGR02917       463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA  540 (899)
T ss_pred             CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            355666777777777777777777777766653 2345556666666777777777777777776654 34566667777


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      ..+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|.++++.+... .+.+...|..+...+.+.|+++
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~  618 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLN  618 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHH
Confidence            77777777777777777766554 445566666777777777777777777777654 3556667777777777777777


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105          275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN  354 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  354 (577)
                      +|.+.|+.+.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++|..+++.+.
T Consensus       619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7777777776653 3345666777777777777777777777776653 2245667777777777777777777777777


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105          355 EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT  434 (577)
Q Consensus       355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  434 (577)
                      +.. +.+...+..+...+.+.|++++|.+.|+++...+  |+..++..+..++.+.|++++|...++.+.+.. +.+...
T Consensus       697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~  772 (899)
T TIGR02917       697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL  772 (899)
T ss_pred             hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            654 3456667777777777777888887777777653  444666667777777788888877777777654 556777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK  514 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  514 (577)
                      +..+...|...|++++|...|+++.+.. +++...++.+...+...|+ .+|+++++++.+... -+..++..+...+..
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH
Confidence            7777777777888888888888877653 4566777777777777777 778888877766432 245566677777788


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          515 SKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       515 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      .|++++|.++++++++.+. .+..++..++.++.+.|++++|.+++++|+
T Consensus       850 ~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  898 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKLL  898 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            8888888888888886542 377777788888888888888888887775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2e-27  Score=265.43  Aligned_cols=440  Identities=12%  Similarity=0.071  Sum_probs=262.8

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...++.+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... ........++.
T Consensus       362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~  439 (899)
T TIGR02917       362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLIL  439 (899)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHH
Confidence            45566666666666677777777666666543 22445555555666666666666666666655432 12233444555


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .+.+.|++++|.++++++.... +++..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus       440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~  517 (899)
T TIGR02917       440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD  517 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence            5556666666666666655432 3455666666667777777777777776666542 3445555666666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE  355 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  355 (577)
                      |.+.++++...+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..+...+...|++++|..+++.+.+
T Consensus       518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  595 (899)
T TIGR02917       518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD  595 (899)
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666543 3345566666666666666666666666665543 22344555566666666666666666666655


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 008105          356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITY  435 (577)
Q Consensus       356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  435 (577)
                      .. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.. +.+..++
T Consensus       596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  672 (899)
T TIGR02917       596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ  672 (899)
T ss_pred             cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence            42 3455566666666666666666666666666543 3455556666666666666666666666665543 4445566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 008105          436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS  515 (577)
Q Consensus       436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  515 (577)
                      ..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+++...+  |+..++..++.++.+.
T Consensus       673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~  749 (899)
T TIGR02917       673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS  749 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence            666666666666666666666665543 3345555556666666666666666666665543  3334455556666666


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          516 KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       516 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      |++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.++
T Consensus       750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  801 (899)
T TIGR02917       750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP  801 (899)
T ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence            6666666666666543 233455555666666666666666666666665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=2.1e-20  Score=210.16  Aligned_cols=430  Identities=13%  Similarity=0.059  Sum_probs=335.1

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHH----------
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP-DTITYN----------  191 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~----------  191 (577)
                      ....+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+..... +...|.          
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            3567788999999999999999874 3378889999999999999999999999998765322 112221          


Q ss_pred             --HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105          192 --MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK  269 (577)
Q Consensus       192 --~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (577)
                        .....+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|++.|++.++.. +.+...+..+...+. 
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-  430 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-  430 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence              22456778999999999999998874 4567788889999999999999999999998763 455667777777664 


Q ss_pred             cCCHHHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105          270 QCGIARAIEVLDDMAIEGCS--------PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG  341 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  341 (577)
                      .++.++|...++.+......        .....+..+...+...|++++|++.+++..+.... +...+..+...|.+.|
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            56789999888765432100        01224556777888999999999999999987422 4557778888999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 008105          342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV---------TYNTVLGALCKEGM  412 (577)
Q Consensus       342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~g~  412 (577)
                      ++++|...++.+.+.. +.+...+..+...+.+.++.++|+..++.+......++..         .+..+...+...|+
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            9999999999998754 3355555556666778999999999998876443222221         12345667889999


Q ss_pred             hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKE  492 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  492 (577)
                      .++|..+++.     .+++...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|.+.++.
T Consensus       589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999872     25566777889999999999999999999999863 34678899999999999999999999998


Q ss_pred             HhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          493 IGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY--KP---DDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       493 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      ..+.. +.+...+..+..++...|++++|.+++++++...-  .|   +...+..+...+...|++++|...+++.+.
T Consensus       663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            87653 22455677788889999999999999999986421  22   234666778889999999999999999874

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=6e-20  Score=206.40  Aligned_cols=439  Identities=13%  Similarity=0.008  Sum_probs=289.7

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHF-CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      ..+.+.+.+.|++++|.+.|+.+.+.+. |+... ...+.......|+.++|++.++++.+.. +.+...+..+...+..
T Consensus       116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~  193 (1157)
T PRK11447        116 LQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS  193 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence            4445567788888888888888876532 33221 1111122224578888888888887765 3456667777788888


Q ss_pred             cCChHHHHHHHHHHhhCCC------------------C--------------CCHHHH---------------------H
Q 008105          200 RGQIRSAIALLDEMSVSGC------------------E--------------PDVITY---------------------N  226 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~------------------~--------------~~~~~~---------------------~  226 (577)
                      .|++++|++.++++.....                  .              |+....                     .
T Consensus       194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            8888888888877643210                  0              000000                     0


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHH---------
Q 008105          227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYN---------  296 (577)
Q Consensus       227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---------  296 (577)
                      .....+...|++++|+..|++.++.. |.+...+..+...+.+.|++++|...|++..+..... ....|.         
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            11234556788888888888877653 4467777788888888888888888888877653211 111121         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH------
Q 008105          297 ---SLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNI------  367 (577)
Q Consensus       297 ---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------  367 (577)
                         .....+.+.|++++|+..++++.+... .+...+..+...+...|++++|.+.|++..+... .+...+..      
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~  430 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence               123456677888888888888877632 2445666677778888888888888887776532 22222222      


Q ss_pred             ------------------------------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          368 ------------------------------------LINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG  411 (577)
Q Consensus       368 ------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  411 (577)
                                                          +...+...|++++|++.|++.++.. +.+...+..+...|.+.|
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence                                                2334456788888888888888764 445667777888888888


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 008105          412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------------------------------  461 (577)
Q Consensus       412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------  461 (577)
                      ++++|...++++.+.. +.+...+..+...+...++.++|...++.+...                              
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            8888888888876643 223333333322333344444443333321100                              


Q ss_pred             ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008105          462 ---------GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR  532 (577)
Q Consensus       462 ---------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  532 (577)
                               ..+++...+..+...+.+.|++++|++.|++..+... .+...+..++..+...|++++|++.++...+. 
T Consensus       589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-  666 (1157)
T PRK11447        589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-  666 (1157)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence                     1234555677788888999999999999999988643 36778888999999999999999999988753 


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          533 YKP-DDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       533 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                       .| +...+..+..++...|++++|.++++++++..+.
T Consensus       667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence             34 4566777888899999999999999999886543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=8.9e-22  Score=188.17  Aligned_cols=434  Identities=17%  Similarity=0.154  Sum_probs=327.6

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      -..|..-..+.|++++|++.-...-+++ +.+......+-..+.+..+++....--....+.. +.-..+|..+.+.+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            4556777788899999988665544443 3344444455566777777776655544444443 3456788888888888


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY-TILIEQVCKQCGIARAIE  278 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~  278 (577)
                      .|++++|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++.  .|+.... +.+...+...|++++|..
T Consensus       129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence            899999999998888764 446778888888888899999998888888765  4544433 334445556788888888


Q ss_pred             HHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105          279 VLDDMAIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDIMNEA  356 (577)
Q Consensus       279 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  356 (577)
                      .+.+....  .|. ...|+.|...+-.+|+...|+..|++..+.  .|+ ...|..|...|...+.++.|...+.+....
T Consensus       206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l  281 (966)
T KOG4626|consen  206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL  281 (966)
T ss_pred             HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence            88887765  333 467888888888889999999888888876  444 347788888888888888888888877765


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105          357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN  436 (577)
Q Consensus       357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  436 (577)
                      . +.....+..+...|...|..|-|+..|++.++.. +.=+..|+.|..++-..|+..+|.+.+....... +......+
T Consensus       282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~  358 (966)
T KOG4626|consen  282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN  358 (966)
T ss_pred             C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence            3 2345667777778888899999999998888763 3346788888888888899999998888887764 44567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHh
Q 008105          437 TLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCK  514 (577)
Q Consensus       437 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~  514 (577)
                      .|...|...|.+++|..+|....+-  .|+ ...++.|...|-..|++++|+..+++..+  ++|+ ...|+.+...|-.
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke  434 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE  434 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence            8888888899999999888888763  454 45678888888888999999998888876  4555 4578888888888


Q ss_pred             cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105          515 SKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK  571 (577)
Q Consensus       515 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  571 (577)
                      .|+.+.|++.+.+.+.  +.|. .+.++.|...+...|+..+|+.-+++.++.+|...
T Consensus       435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp  490 (966)
T KOG4626|consen  435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP  490 (966)
T ss_pred             hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence            8899999998888884  4565 56778888888889999999998888888665433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.1e-20  Score=189.67  Aligned_cols=307  Identities=14%  Similarity=0.111  Sum_probs=164.8

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMVGGLCKR  200 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~  200 (577)
                      ...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            334556667777777777776653 22445566666666666777777666666665421111   13455556666666


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105          201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVL  280 (577)
Q Consensus       201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (577)
                      |++++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++...                     
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------  178 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------  178 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence            66666666666665432 33455555566666666666666666665554331111100                     


Q ss_pred             HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008105          281 DDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP  360 (577)
Q Consensus       281 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  360 (577)
                                ....+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+...
T Consensus       179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        179 ----------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence                      00122334444445555555555555554432 1123344444555555555555555555555432221


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID  440 (577)
Q Consensus       361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  440 (577)
                      ...+++.++.+|.+.|++++|...++++.+.  .|+...+..++..+.+.|++++|..+++++.+.  .|+..+++.++.
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~  323 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD  323 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence            2334555666666666666666666666554  344444455666666666666666666665554  455556665555


Q ss_pred             HHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 008105          441 GLAK---KGCMEKAMVLYGQMMENGISPDDI  468 (577)
Q Consensus       441 ~~~~---~g~~~~A~~~~~~m~~~g~~p~~~  468 (577)
                      .+..   .|+.+++..++++|.+.++.|++.
T Consensus       324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            5543   345666666666666555544443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=1.5e-20  Score=188.63  Aligned_cols=298  Identities=15%  Similarity=0.095  Sum_probs=148.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHccCCHHH
Q 008105          269 KQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN---SITYNTLLHSLGSRGCWDA  345 (577)
Q Consensus       269 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~  345 (577)
                      ..|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.|+++.
T Consensus        47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            3444444444444444432 11233444444444444444444444444443321111   1233444444555555555


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105          346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD----IVTYNTVLGALCKEGMLNEALQLLH  421 (577)
Q Consensus       346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~  421 (577)
                      |..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.    ...+..+...+.+.|++++|...++
T Consensus       126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  204 (389)
T PRK11788        126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK  204 (389)
T ss_pred             HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            555555554432 23344455555555555555555555555554321111    1123344445555556666666665


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc
Q 008105          422 LLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR  501 (577)
Q Consensus       422 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  501 (577)
                      ++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|...|++++|.+.++++.+..  |+
T Consensus       205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~  281 (389)
T PRK11788        205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PG  281 (389)
T ss_pred             HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence            555432 223445555556666666666666666666543211113345556666666666666666666665542  34


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCcc
Q 008105          502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD---DGMTEEAYKLWQKLIEWKVFEKGT  573 (577)
Q Consensus       502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~  573 (577)
                      ...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..+++++.++++.|++.
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            444455666666666666666666666542  4566566555555443   345666666666666655555443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=1.9e-18  Score=182.53  Aligned_cols=432  Identities=14%  Similarity=0.024  Sum_probs=286.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+......|.+.|++++|+..|++.++.  .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3557788889999999999999998875  4677788888888999999999999999988875 345678888888999


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIE  278 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  278 (577)
                      ..|++++|..-|......+ ..+......++..+..    ..+........+.. +++...+..+.. +...........
T Consensus       206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  278 (615)
T TIGR00990       206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA  278 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence            9999999988887665443 1122222222222111    22333333333321 222223322222 222111111111


Q ss_pred             HHHHHHHcCCCCCH-hhHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105          279 VLDDMAIEGCSPDI-VTYNSLVNF---SCKQGKYDDAVLVINNLLSRG-MEP-NSITYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       279 ~~~~~~~~~~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      -+.+....  .+.. ..+..+...   ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...++.
T Consensus       279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k  356 (615)
T TIGR00990       279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK  356 (615)
T ss_pred             hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            11111111  1111 111111111   123467888888888888764 223 344677777778888889999988888


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL  432 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~  432 (577)
                      ..+.. +.+...|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|+...+.. +.+.
T Consensus       357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~  433 (615)
T TIGR00990       357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI  433 (615)
T ss_pred             HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence            88764 2345677788888888889999998888887764 5567788888888888899999998888888765 4566


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH------HHH
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS------AYR  506 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~  506 (577)
                      ..+..+...+.+.|++++|+..|++..+.. +.+...++.+...+...|++++|.+.|++........+..      .++
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~  512 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN  512 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence            777778888888889999999888887642 3356778888888888889999998888877643221111      112


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          507 LVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       507 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      .....+...|++++|.+++++..+.. +.+...+..+...+.+.|++++|.+++++..+..
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            22223344688888998888887543 2234567788888888999999988888887653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=5.6e-20  Score=175.98  Aligned_cols=408  Identities=17%  Similarity=0.160  Sum_probs=332.9

Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008105          125 QNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIR  204 (577)
Q Consensus       125 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~  204 (577)
                      ..+.+..+++....--....+. .+.-..+|..+.+.+-..|++++|+.+++.+++.. +..+..|..+..++...|+.+
T Consensus        90 ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~  167 (966)
T KOG4626|consen   90 AIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLE  167 (966)
T ss_pred             hhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCc
Confidence            4555666666665554444444 34467789999999999999999999999999875 346788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          205 SAIALLDEMSVSGCEPDVITYNT-ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM  283 (577)
Q Consensus       205 ~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  283 (577)
                      .|.+.|.+..+.  .|+.....+ +...+-..|++++|...|.+.++.. +--.+.|+.|...+-..|++..|++-|++.
T Consensus       168 ~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eA  244 (966)
T KOG4626|consen  168 LAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEA  244 (966)
T ss_pred             ccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHh
Confidence            999999988876  466554444 3444455899999999999888753 445678899999999999999999999999


Q ss_pred             HHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 008105          284 AIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPT  361 (577)
Q Consensus       284 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~  361 (577)
                      .+.  .|+ ...|-.|.+.|...+.+++|...+.+....  .|+ ...+..+...|..+|.+|.|...+++..+... .=
T Consensus       245 vkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F  319 (966)
T KOG4626|consen  245 VKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NF  319 (966)
T ss_pred             hcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-Cc
Confidence            876  344 478889999999999999999999888766  444 45777788888999999999999999988652 24


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG  441 (577)
Q Consensus       362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~  441 (577)
                      +..|+.|..++-..|++.+|.+.|++.+... +....+.+.|...|...|.+++|..+|....+-. +.-....+.|...
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i  397 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASI  397 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHH
Confidence            5789999999999999999999999999874 5567788999999999999999999999887753 3345678899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHH
Q 008105          442 LAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDM  520 (577)
Q Consensus       442 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  520 (577)
                      |-++|++++|+..+++.++  +.|+ ...|+.+...|-..|+.+.|.+.+.+....+.. -...++.|...|-..|+..+
T Consensus       398 ~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~  474 (966)
T KOG4626|consen  398 YKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPE  474 (966)
T ss_pred             HHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHH
Confidence            9999999999999999987  5677 568999999999999999999999998875422 35677889999999999999


Q ss_pred             HHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 008105          521 AIQVLELMISSRYKPD-DTVFSTIVKKVAD  549 (577)
Q Consensus       521 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~  549 (577)
                      |++-+++.+  .++|| +..|..++.++.-
T Consensus       475 AI~sY~~aL--klkPDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  475 AIQSYRTAL--KLKPDFPDAYCNLLHCLQI  502 (966)
T ss_pred             HHHHHHHHH--ccCCCCchhhhHHHHHHHH
Confidence            999999998  45677 4566666665533

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=2.4e-18  Score=181.74  Aligned_cols=403  Identities=12%  Similarity=0.013  Sum_probs=287.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      ..|+...|..+..+|.+.|++++|++.++..++.. +.+...+..+..+|...|++++|+.-|......+...+. ....
T Consensus       156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~  233 (615)
T TIGR00990       156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE-QSAQ  233 (615)
T ss_pred             cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH-HHHH
Confidence            46788899999999999999999999999999874 347778999999999999999999999877655322222 2222


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HH
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY-LITYTILIEQ---VC  268 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~---~~  268 (577)
                      ++..+..    ..+........+.. +++...+..+.. +...........-+....+  ..+. ...+..+...   ..
T Consensus       234 ~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~  305 (615)
T TIGR00990       234 AVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESK  305 (615)
T ss_pred             HHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccchHHHHHHHHHhh
Confidence            2222222    12222233332221 222223332222 2221111222111111111  1111 1111111111   12


Q ss_pred             HcCCHHHHHHHHHHHHHcC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHH
Q 008105          269 KQCGIARAIEVLDDMAIEG-CSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDA  345 (577)
Q Consensus       269 ~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~  345 (577)
                      ..+++++|.+.|+.....+ ..| ....|+.+...+...|++++|+..+++..+.  .|+ ...|..+...+...|++++
T Consensus       306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~e  383 (615)
T TIGR00990       306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDK  383 (615)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHH
Confidence            3478999999999998764 223 4467888888999999999999999999877  444 5578888888999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105          346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG  425 (577)
Q Consensus       346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  425 (577)
                      |...++...+.. +.+...|..+...+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|...++...+
T Consensus       384 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  461 (615)
T TIGR00990       384 AEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK  461 (615)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999998764 4467889999999999999999999999999875 55677888889999999999999999999887


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105          426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI------THRTLIWGFCRADQVEEAVDLLKEIGKRGNK  499 (577)
Q Consensus       426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  499 (577)
                      .. +.+...++.+...+...|++++|.+.|++..+..-..+..      .++.....+...|++++|.+++++....+. 
T Consensus       462 ~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-  539 (615)
T TIGR00990       462 NF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-  539 (615)
T ss_pred             hC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-
Confidence            64 5567889999999999999999999999998743111111      122222334456999999999999887642 


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      .+...+..+...+.+.|++++|++.|++..+.
T Consensus       540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            24557888999999999999999999999864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=4.7e-18  Score=178.91  Aligned_cols=332  Identities=13%  Similarity=0.060  Sum_probs=273.6

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      .-++..+.+.|++++|..+++..+...+. +...+..++.+....|++++|.+.++++.+.. +.+...+..+...+...
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~  123 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence            45678899999999999999999987544 56667777788888999999999999999875 45677888899999999


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105          201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVL  280 (577)
Q Consensus       201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  280 (577)
                      |++++|.+.+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...+
T Consensus       124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence            99999999999998763 4567888899999999999999999999887654 3344444444 3478899999999999


Q ss_pred             HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHHhC
Q 008105          281 DDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA----VDKILDIMNEA  356 (577)
Q Consensus       281 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~  356 (577)
                      +.+......++...+..+...+.+.|++++|...++++.+... .+...+..+...+...|++++    |...++...+.
T Consensus       201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            9988764334445556667888999999999999999998752 356678888899999999985    89999999886


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105          357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN  436 (577)
Q Consensus       357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  436 (577)
                      . +.+...+..+...+.+.|++++|+..+++..... +.+...+..+..++.+.|++++|...++.+...+ +.+...+.
T Consensus       280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~  356 (656)
T PRK15174        280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNR  356 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHH
Confidence            5 3477889999999999999999999999999874 4566778888999999999999999999988764 22233444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105          437 TLIDGLAKKGCMEKAMVLYGQMMEN  461 (577)
Q Consensus       437 ~li~~~~~~g~~~~A~~~~~~m~~~  461 (577)
                      .+..++...|+.++|...|++..+.
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4567889999999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=5.7e-18  Score=178.32  Aligned_cols=366  Identities=9%  Similarity=-0.016  Sum_probs=288.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      -...++..+.+.|++++|..+++..+..... +...+..++......|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~  121 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL  121 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            3455677888999999999999999988644 44555556677778999999999999999874 556788889999999


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      +.|++++|+..+++..... +.+...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence            9999999999999998763 556788889999999999999999999988766422 33344333 34788999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Q 008105          314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDR----AINSFNQMV  389 (577)
Q Consensus       314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~  389 (577)
                      .++.+.+....++...+..+...+...|++++|...++...+.. +.+...+..+...+.+.|++++    |...|++..
T Consensus       199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            99998877544455555666778889999999999999999875 4567888889999999999986    899999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 008105          390 SKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-  468 (577)
Q Consensus       390 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-  468 (577)
                      +.. +.+...+..+...+.+.|++++|...+++..... +.+...+..+...+.+.|++++|...|+++.+.  .|+.. 
T Consensus       278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~  353 (656)
T PRK15174        278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK  353 (656)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence            874 5577889999999999999999999999998875 555677888899999999999999999999875  35543 


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 008105          469 THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR----LVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      .+..+..++...|+.++|.+.|++..+....-....|.    .+-.++...+..++......++.
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~  418 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA  418 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence            34445678899999999999999987753221222332    33333444455544434444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.88  E-value=1.7e-17  Score=178.59  Aligned_cols=163  Identities=10%  Similarity=0.013  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      +....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.+++++.++.. +.+...+..+...
T Consensus        15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~   92 (765)
T PRK10049         15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILT   92 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3344445566666677777776666665522 3344456666666666677777777776666553 3345555566666


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARA  276 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  276 (577)
                      +...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+.. |.+...+..+...+...+..++|
T Consensus        93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~A  169 (765)
T PRK10049         93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPA  169 (765)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHH
Confidence            666677777777776666552 33444 6666666666677777777766666542 33445555555566666666666


Q ss_pred             HHHHHHHH
Q 008105          277 IEVLDDMA  284 (577)
Q Consensus       277 ~~~~~~~~  284 (577)
                      ++.++...
T Consensus       170 l~~l~~~~  177 (765)
T PRK10049        170 LGAIDDAN  177 (765)
T ss_pred             HHHHHhCC
Confidence            66665544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=1.8e-17  Score=178.28  Aligned_cols=411  Identities=10%  Similarity=-0.006  Sum_probs=308.1

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      +.+.....-.+......|+.++|++++.+..... +.+...+..+...+.+.|++++|.++|++..+.. +.+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            3455666667788889999999999999998633 4566678999999999999999999999988763 4567778888


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008105          229 LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKY  308 (577)
Q Consensus       229 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  308 (577)
                      ...+...|++++|+..++++.+. .|.+.. +..+...+...|+.++|...++++.+.. +.+...+..+...+...+..
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence            89999999999999999999876 355666 8888889999999999999999999874 33556667788888899999


Q ss_pred             HHHHHHHHHHhhC-----CCCCCHHHHHHHHHHH-----HccCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHH
Q 008105          309 DDAVLVINNLLSR-----GMEPNSITYNTLLHSL-----GSRGCW---DAVDKILDIMNEA-SHSPTVF-TYN----ILI  369 (577)
Q Consensus       309 ~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~-----~~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~li  369 (577)
                      ++|++.++.....     +...+  ....++...     ...+++   ++|...++.+.+. ...|+.. .+.    ..+
T Consensus       167 e~Al~~l~~~~~~p~~~~~l~~~--~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        167 APALGAIDDANLTPAEKRDLEAD--AAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHH--HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            9999988866541     11111  122222222     223344   7788888888754 1122221 111    113


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhc
Q 008105          370 NGLCKYGLVDRAINSFNQMVSKNCQ-PDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP---CLITYNTLIDGLAKK  445 (577)
Q Consensus       370 ~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~  445 (577)
                      .++...|++++|+..|+++.+.+.+ |+. ....+..+|...|++++|...|+.+.+.....   .......+..++...
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            3456779999999999999887522 322 22235778999999999999999987653111   134566677788999


Q ss_pred             CCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105          446 GCMEKAMVLYGQMMENG-----------ISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG  511 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  511 (577)
                      |++++|.++++++.+..           -.|+   ...+..+...+...|+.++|+++++++.... +.+...+..+...
T Consensus       324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l  402 (765)
T PRK10049        324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV  402 (765)
T ss_pred             ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            99999999999998642           1123   2345677788889999999999999998764 3357788889999


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105          512 LCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE  570 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (577)
                      +...|++++|++.+++.++.  .|+ ...+..++..+...|++++|+.+++++++..|..
T Consensus       403 ~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        403 LQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             HHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999864  455 6677777888999999999999999999965543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=3.8e-16  Score=168.30  Aligned_cols=190  Identities=10%  Similarity=-0.065  Sum_probs=127.1

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAM  452 (577)
Q Consensus       373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  452 (577)
                      .+.|++++|...|+++...  +|+...+..+..++.+.|+.++|...++...+.. +++...+..+.....+.|++++|.
T Consensus       520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHH
Confidence            3556666666666655433  3333444455555666666666666666665543 222333333333344457788888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008105          453 VLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR  532 (577)
Q Consensus       453 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  532 (577)
                      ..+++..+.  .|+...+..+..++.+.|+.++|...+++...... .+...+..+..++...|++++|++.+++.++..
T Consensus       597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            888777764  46777778888888888888888888888877642 255667777778888888888888888887632


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       533 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                       +-+...+..+..++...|++++|+..+++.++..+.
T Consensus       674 -P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        674 -PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence             335677788888888888888888888888875543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.86  E-value=3.7e-16  Score=165.00  Aligned_cols=440  Identities=10%  Similarity=-0.004  Sum_probs=323.1

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      .-+-...+.|+++.|+..|++..+..+.-....+ .++..+...|+.++|+..+++..... .........+...|...|
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence            3344567899999999999999987433112334 88888889999999999999998211 223333444466888999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105          202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD  281 (577)
Q Consensus       202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  281 (577)
                      ++++|.++|+++.+.. +.+...+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|++.++
T Consensus       117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e  193 (822)
T PRK14574        117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS  193 (822)
T ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence            9999999999999875 446777888889999999999999999998765  4555556555445545666767999999


Q ss_pred             HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH------HHHHHHH-----HccCCH---HHHH
Q 008105          282 DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY------NTLLHSL-----GSRGCW---DAVD  347 (577)
Q Consensus       282 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------~~ll~~~-----~~~g~~---~~a~  347 (577)
                      ++.+.. +.+...+..+..++.+.|-...|.++..+-... +.+...-+      ..+++.-     ....++   +.|.
T Consensus       194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al  271 (822)
T PRK14574        194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL  271 (822)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            999884 346777888899999999999998777653321 11111111      1111110     012233   3344


Q ss_pred             HHHHHHHhC-C-CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008105          348 KILDIMNEA-S-HSPTVFTY----NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLH  421 (577)
Q Consensus       348 ~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  421 (577)
                      .-++.+... + .++....|    .-.+-++.+.+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++
T Consensus       272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~  351 (822)
T PRK14574        272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS  351 (822)
T ss_pred             HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            444554442 1 12222222    23455778899999999999999988866566788899999999999999999999


Q ss_pred             HHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhcCC
Q 008105          422 LLNGSS-----CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-------------SPDDI-THRTLIWGFCRADQ  482 (577)
Q Consensus       422 ~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~-~~~~li~~~~~~g~  482 (577)
                      .+....     .+++......|.-+|...+++++|..+++++.+...             .||.. .+..++..+...|+
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd  431 (822)
T PRK14574        352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND  431 (822)
T ss_pred             HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence            986643     133444467889999999999999999999987311             12222 23456677889999


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105          483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQ  561 (577)
Q Consensus       483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~  561 (577)
                      ..+|++.++++.... +-|......+.+.+...|.+.+|++.++....  ..|+ ..+....+.++...|++++|..+.+
T Consensus       432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~  508 (822)
T PRK14574        432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTD  508 (822)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999998764 34888899999999999999999999977764  3554 5667788889999999999999999


Q ss_pred             HHHHcCCCCC
Q 008105          562 KLIEWKVFEK  571 (577)
Q Consensus       562 ~~~~~~~~~~  571 (577)
                      .+.+..|+..
T Consensus       509 ~l~~~~Pe~~  518 (822)
T PRK14574        509 DVISRSPEDI  518 (822)
T ss_pred             HHHhhCCCch
Confidence            9998666543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.86  E-value=3.2e-17  Score=165.48  Aligned_cols=450  Identities=12%  Similarity=0.058  Sum_probs=345.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      ..|+++.+.|.+.|.-.|++..+..+...+......  .-...|..+.++|-..|++++|...|.+..+....--+..+-
T Consensus       267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~  346 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV  346 (1018)
T ss_pred             CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence            457899999999999999999999999998876422  134458889999999999999999999998764222234455


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG----KFKQAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      -+..+|.+.|+++.+...|+++.+.. +-+..+...|...|+..+    ..+.|..++.+..+. .+.|...|-.+...+
T Consensus       347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLL  424 (1018)
T ss_pred             chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHH
Confidence            67899999999999999999998763 445677777777777664    456777777776665 366788888777766


Q ss_pred             HHcCCHHHHHHHHHHHH----HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCH------HHHHHHH
Q 008105          268 CKQCGIARAIEVLDDMA----IEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR---GMEPNS------ITYNTLL  334 (577)
Q Consensus       268 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll  334 (577)
                      -...- ..++..|..+.    ..+..+.+...|.+.......|++++|...|......   ...+|.      .+-..+.
T Consensus       425 e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla  503 (1018)
T KOG2002|consen  425 EQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA  503 (1018)
T ss_pred             HhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence            55444 44476665544    4455677889999999999999999999999998765   222333      2233345


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105          335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN  414 (577)
Q Consensus       335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  414 (577)
                      ...-..++.+.|.+.+..+.+.. +.-+..|-.++......+...+|...+++....+ ..++..++.+...+.+...+.
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~  581 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK  581 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence            56667789999999999998763 2233344445444445678899999999998764 667777888888899988999


Q ss_pred             HHHHHHHHHhhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          415 EALQLLHLLNGSS-CSPCLITYNTLIDGLAK------------KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD  481 (577)
Q Consensus       415 ~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  481 (577)
                      .|.+-|..+.+.- ..+|..+.-+|.+.|.+            .+..++|+++|.+..+.. +-|...-|.+.-.++..|
T Consensus       582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence            8888777665432 23577777777775543            345788999999998763 457788889999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS-RYKPDDTVFSTIVKKVADDGMTEEAYKLW  560 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  560 (577)
                      ++.+|..+|.+..+... -...+|-.+.++|...|++..|++.|+...+. ....+..+...|.+++.+.|++.+|.+.+
T Consensus       661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l  739 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL  739 (1018)
T ss_pred             CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            99999999999988643 24567888999999999999999999998763 44567889999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 008105          561 QKLIEWKVFE  570 (577)
Q Consensus       561 ~~~~~~~~~~  570 (577)
                      .......|..
T Consensus       740 l~a~~~~p~~  749 (1018)
T KOG2002|consen  740 LKARHLAPSN  749 (1018)
T ss_pred             HHHHHhCCcc
Confidence            8888755443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.84  E-value=2.5e-15  Score=162.06  Aligned_cols=429  Identities=12%  Similarity=0.009  Sum_probs=266.4

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +..++..|.+.|.+.|++++|+..+++..+..+ -|...+.. +..+   +++++|.++++++.+.. +-+..++..+..
T Consensus        77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~-La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~  150 (987)
T PRK09782         77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERS-LAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCR  150 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHH-HHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHH
Confidence            467778888888888888888888888887632 23333333 3222   77888888888888774 233444444444


Q ss_pred             H--------HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          196 G--------LCKRGQIRSAIALLDEMSVSGCEPDVITYNTI-LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ  266 (577)
Q Consensus       196 ~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  266 (577)
                      .        |.+.   ++|.+.++ .......|+..+.... .+.|.+.+++++|++++.++.+.+ +.+......|...
T Consensus       151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~a  225 (987)
T PRK09782        151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDV  225 (987)
T ss_pred             HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4        5554   44444444 3322223345544444 888888999999999999998875 4456666777777


Q ss_pred             HHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHHHHH------------
Q 008105          267 VCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME-PNSITYNT------------  332 (577)
Q Consensus       267 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~------------  332 (577)
                      |.. .++ +++..+++.    ..+.+...+..+...|.+.|+.++|.++++++...-.. |...++..            
T Consensus       226 y~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~  300 (987)
T PRK09782        226 LLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA  300 (987)
T ss_pred             HHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence            777 366 777777553    22357888899999999999999999999887643111 21111100            


Q ss_pred             ------------------HHHHHH--------------------------------------------------------
Q 008105          333 ------------------LLHSLG--------------------------------------------------------  338 (577)
Q Consensus       333 ------------------ll~~~~--------------------------------------------------------  338 (577)
                                        ++..+.                                                        
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~  380 (987)
T PRK09782        301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD  380 (987)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence                              011111                                                        


Q ss_pred             -------ccCCHHHHHHHHHHHHhC-C-CCC-------------------------------------------------
Q 008105          339 -------SRGCWDAVDKILDIMNEA-S-HSP-------------------------------------------------  360 (577)
Q Consensus       339 -------~~g~~~~a~~~~~~~~~~-~-~~~-------------------------------------------------  360 (577)
                             +.|+.++|.+++...... + ...                                                 
T Consensus       381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  460 (987)
T PRK09782        381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN  460 (987)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence                   223344444444333221 0 001                                                 


Q ss_pred             ---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105          361 ---------------TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG  425 (577)
Q Consensus       361 ---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  425 (577)
                                     +...|..+..++.. ++.++|+..+.+....  .|+......+...+.+.|++++|...++.+..
T Consensus       461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~  537 (987)
T PRK09782        461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL  537 (987)
T ss_pred             HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence                           22222333333333 4445566655555544  24433333334444567778888777777654


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105          426 SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY  505 (577)
Q Consensus       426 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  505 (577)
                      .  +|+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|...+++..+..  |+...|
T Consensus       538 ~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~  612 (987)
T PRK09782        538 H--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAY  612 (987)
T ss_pred             c--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHH
Confidence            4  3444455566667777888888888888777653 2223333333344445688888888888887653  456777


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          506 RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      ..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..+++.++..|.
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            788888888888888888888888542 334566777777888888888888888888886553

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=4.4e-15  Score=136.87  Aligned_cols=428  Identities=15%  Similarity=0.189  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI--DRIEK-ASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~-A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      +.+=|.|+++ ...|.++++.-+|+.|...|++.+...-..|++.-+-.  .+.-- -.+.|-.|...| ..+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            4556666665 56789999999999999999888877776666544322  22211 123333333333 1122222   


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                           +.|.+.+   ++-+..    +.+..++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.   
T Consensus       191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---  255 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---  255 (625)
T ss_pred             -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence                 1222222   222221    3344455555555555555555555555544444444555555544432211   


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH----HHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDA----VLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA-VDK  348 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~  348 (577)
                       ...+++.+|....+.||..|+|+++....+.|+++.|    .+++.+|++.|++|...+|..+|..+++.++..+ +..
T Consensus       256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~  334 (625)
T KOG4422|consen  256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS  334 (625)
T ss_pred             -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence             1144445555544555555555555555555544332    3344455555555555555555555544444322 222


Q ss_pred             HHHHHHhC----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCh
Q 008105          349 ILDIMNEA----S----HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN----CQPD---IVTYNTVLGALCKEGML  413 (577)
Q Consensus       349 ~~~~~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~  413 (577)
                      ++.++...    .    .+.+...|...+..|....+.+-|.++..-+....    +.|+   ..-|..+..+.|+....
T Consensus       335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~  414 (625)
T KOG4422|consen  335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI  414 (625)
T ss_pred             HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            22222111    0    11233334444444444444444444433332210    1111   11233344444455555


Q ss_pred             hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 008105          414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD------------  481 (577)
Q Consensus       414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------  481 (577)
                      +.-...++.|..+-.-|+..+...++++..-.+.++-.-+++..++..|..-+...-..++..+++..            
T Consensus       415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~  494 (625)
T KOG4422|consen  415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ  494 (625)
T ss_pred             HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence            55555555555444445555555555555555555555555555544443222222222222222211            


Q ss_pred             --------CHHHH-HHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Q 008105          482 --------QVEEA-VDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR----YKPDDTVFSTIVKKVA  548 (577)
Q Consensus       482 --------~~~~A-~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~l~~~~~  548 (577)
                              ++.++ ..--.+|.+.  .......++..-.+.+.|+.++|.+++....+++    ..|......-+++.-.
T Consensus       495 ~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~  572 (625)
T KOG4422|consen  495 VAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAK  572 (625)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHH
Confidence                    00000 1111122222  2234455666666677777777777777664422    2233333445555666


Q ss_pred             hcCCHHHHHHHHHHHHHcC
Q 008105          549 DDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~  567 (577)
                      +......|...++-+...+
T Consensus       573 ~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  573 VSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             hcCCHHHHHHHHHHHHHcC
Confidence            6666777776666665443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.81  E-value=1.3e-15  Score=153.96  Aligned_cols=446  Identities=13%  Similarity=0.055  Sum_probs=334.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .|--+.++|-..|+++.|...|.+..+....-....+.-+...+.+.|+++.+...|+.+.+.. +-+..+...|...|+
T Consensus       309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYA  387 (1018)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHH
Confidence            4667889999999999999999998876432223444557899999999999999999999875 446677777888887


Q ss_pred             hcC----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHc
Q 008105          199 KRG----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQL----RKGCPPYLITYTILIEQVCKQ  270 (577)
Q Consensus       199 ~~g----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~  270 (577)
                      ..+    ..+.|..++.+..+.- +.|...|-.+...+-... ...++..|....    ..+.++.+...|.+...+...
T Consensus       388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~  465 (1018)
T KOG2002|consen  388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL  465 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence            765    5677888887777653 557788887777776544 444477776544    455568889999999999999


Q ss_pred             CCHHHHHHHHHHHHHc---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHcc
Q 008105          271 CGIARAIEVLDDMAIE---GCSPDI------VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGSR  340 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~  340 (577)
                      |+++.|...|+.....   ...+|.      .+-..+...+-..++.+.|.+.|..+.+.  .|.-+ .|.-+.......
T Consensus       466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k  543 (1018)
T KOG2002|consen  466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDK  543 (1018)
T ss_pred             cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhc
Confidence            9999999999998765   122333      22334556666778999999999999987  55544 333333333445


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh----------
Q 008105          341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK-NCQPDIVTYNTVLGALCK----------  409 (577)
Q Consensus       341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~----------  409 (577)
                      +...+|...+......+ ..++..++.+...+.+...+.-|.+-|..+.+. ...+|+.+.-+|.+.|.+          
T Consensus       544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e  622 (1018)
T KOG2002|consen  544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE  622 (1018)
T ss_pred             cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence            77889999998887654 457777888888999999999998877777654 224677777777775553          


Q ss_pred             --cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          410 --EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       410 --~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  487 (577)
                        .+..++|+++|.+..+.. +.|...-|.+.-.++..|++.+|..+|.+.++... .+..+|..+.++|...|++..|.
T Consensus       623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI  700 (1018)
T KOG2002|consen  623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI  700 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence              245778999999988876 77888889999999999999999999999998642 35567899999999999999999


Q ss_pred             HHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------------HH
Q 008105          488 DLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKK------------------VA  548 (577)
Q Consensus       488 ~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~------------------~~  548 (577)
                      ++|+...+ ....-+......|.+++.+.|.+.+|.+.+.........-....|+..+-.                  ..
T Consensus       701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~  780 (1018)
T KOG2002|consen  701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE  780 (1018)
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            99998665 455567888999999999999999999999888764322223333332211                  12


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCc
Q 008105          549 DDGMTEEAYKLWQKLIEWKVFEKG  572 (577)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~~~~~~  572 (577)
                      ..+..+.|.++|..|...+..+-.
T Consensus       781 a~~~le~a~r~F~~ls~~~d~r~~  804 (1018)
T KOG2002|consen  781 AVKELEEARRLFTELSKNGDKRIS  804 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCC
Confidence            234577888999999887766433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=3.1e-14  Score=150.56  Aligned_cols=414  Identities=13%  Similarity=0.065  Sum_probs=306.6

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      .++..+...|+.++|+..+++..... ..+......+...+...|++++|+++|+++.+.. +.+...+..++..|...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC
Confidence            88899999999999999999998321 1223333334568888899999999999999986 345677778889999999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105          202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD  281 (577)
Q Consensus       202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  281 (577)
                      +.++|++.++++...  .|+...+..++..+...++..+|++.++++.+.. |.+...+..+...+.+.|-...|.++..
T Consensus       151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            999999999999876  5666666555555555677767999999999874 6678888889999999999999998776


Q ss_pred             HHHHcCCCCCHhhH------HHHHHHH---H--hcC---CHHHHHHHHHHHhhC-CCCCCHH-----HHHHHHHHHHccC
Q 008105          282 DMAIEGCSPDIVTY------NSLVNFS---C--KQG---KYDDAVLVINNLLSR-GMEPNSI-----TYNTLLHSLGSRG  341 (577)
Q Consensus       282 ~~~~~~~~~~~~~~------~~li~~~---~--~~g---~~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~~g  341 (577)
                      +-... +.+....+      ..+++.-   .  ...   -.+.|+.-++.+... +..|...     ...-.+-++...+
T Consensus       228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~  306 (822)
T PRK14574        228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH  306 (822)
T ss_pred             hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence            64322 11111111      1111110   0  111   234556666665542 2223322     2223455778899


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHH
Q 008105          342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN-----CQPDIVTYNTVLGALCKEGMLNEA  416 (577)
Q Consensus       342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A  416 (577)
                      ++.++.+.++.+...+.+....+-..+.++|...+++++|..+|+.+....     .+++......|.-++...+++++|
T Consensus       307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A  386 (822)
T PRK14574        307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA  386 (822)
T ss_pred             hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence            999999999999988866566688899999999999999999999997653     133444467889999999999999


Q ss_pred             HHHHHHHhhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          417 LQLLHLLNGSSC-------------SPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ  482 (577)
Q Consensus       417 ~~~~~~~~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  482 (577)
                      ..+++.+.+...             .||-. .+..++..+...|++.+|++.++++.... +-|......+.+.+...|.
T Consensus       387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL  465 (822)
T ss_pred             HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            999999987321             11222 24456777889999999999999998753 5588899999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +.+|.+.++...... +-+..+....+.++...|++++|..+.+...+.  .|+......|-+
T Consensus       466 p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r  525 (822)
T PRK14574        466 PRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELDR  525 (822)
T ss_pred             HHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence            999999997776653 235666777888888999999999999998853  566554444443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=2.5e-15  Score=139.29  Aligned_cols=426  Identities=14%  Similarity=0.102  Sum_probs=279.8

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN-LIRGLIRIDRIEKASKVLQIMVMSGGVPD----TITYNM  192 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~  192 (577)
                      .+...|.+-|..+....+|+..++-+++...-||...... +.+.+.+...+.+|+++++..+..-+..+    ....+.
T Consensus       202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n  281 (840)
T KOG2003|consen  202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN  281 (840)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence            4456678888888899999999999988777777665533 55778888999999999988877532222    223455


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC------------CCHHHH
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP------------PYLITY  260 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~  260 (577)
                      +.-.+.+.|+++.|...|+...+.  .|+..+-..|+-++...|+-++..+.|.+|+.....            |+....
T Consensus       282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll  359 (840)
T KOG2003|consen  282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL  359 (840)
T ss_pred             cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence            555678899999999999988776  588777666777777789999999999998764222            222222


Q ss_pred             HHHH-----HHHHHcCC--HHHHHHHHHHHHHcCCCCCHh-------------hHH--------HHHHHHHhcCCHHHHH
Q 008105          261 TILI-----EQVCKQCG--IARAIEVLDDMAIEGCSPDIV-------------TYN--------SLVNFSCKQGKYDDAV  312 (577)
Q Consensus       261 ~~l~-----~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~-------------~~~--------~li~~~~~~g~~~~A~  312 (577)
                      +.-+     .-.-+.+.  .+++.-.--++..--+.|+-.             .+.        .-...+.++|+++.|.
T Consensus       360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai  439 (840)
T KOG2003|consen  360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI  439 (840)
T ss_pred             HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence            2211     11111111  111111111111111122210             000        1123577888888888


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHH------------------------------------HHHccCCHHHHHHHHHHHHhC
Q 008105          313 LVINNLLSRGMEPNSITYNTLLH------------------------------------SLGSRGCWDAVDKILDIMNEA  356 (577)
Q Consensus       313 ~~~~~m~~~g~~p~~~~~~~ll~------------------------------------~~~~~g~~~~a~~~~~~~~~~  356 (577)
                      ++++-..+..-+.....-+.|-.                                    .....|+++.|.+.+++....
T Consensus       440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            88877665532211111111111                                    112346777777777777654


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH
Q 008105          357 SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN  436 (577)
Q Consensus       357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~  436 (577)
                      ........||. .-.+-+.|++++|++.|-++... +..+..+...+...|-...+...|.+++.+.... ++.|+....
T Consensus       520 dasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils  596 (840)
T KOG2003|consen  520 DASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS  596 (840)
T ss_pred             chHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence            33322333333 22356678888888887766543 2346666777777787788888888887766554 466788888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH-hc
Q 008105          437 TLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC-KS  515 (577)
Q Consensus       437 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~  515 (577)
                      -|...|-+.|+-.+|.+.+-+--+. ++-+..+...|...|....-+++++.+|++..-  ++|+..-|..||..|. +.
T Consensus       597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrs  673 (840)
T KOG2003|consen  597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRS  673 (840)
T ss_pred             HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhc
Confidence            8888888888888887766554332 456778888888888888888889999888654  5788888888876655 58


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          516 KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM  552 (577)
Q Consensus       516 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  552 (577)
                      |++++|.++++...+ .++-|.....-|++.+...|.
T Consensus       674 gnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  674 GNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence            899999999988876 567788888888888888775

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.75  E-value=6.7e-13  Score=133.87  Aligned_cols=449  Identities=15%  Similarity=0.111  Sum_probs=307.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      .|...-.-...+.+...|++++|.+++.++++.. +.+...|.+|...|-+.|+.+++...+-.+.... +.|...|..+
T Consensus       136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l  213 (895)
T KOG2076|consen  136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL  213 (895)
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence            3444444455566667799999999999999985 4488899999999999999999998877776655 5577999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI----LIEQVCK  269 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~  269 (577)
                      .....+.|.+++|.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-+..    .+..+..
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~  292 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT  292 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999875 55655556667788999999999999999998753333333333    3455666


Q ss_pred             cCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH------------------
Q 008105          270 QCGIARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY------------------  330 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~------------------  330 (577)
                      .++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+.....++|..-|                  
T Consensus       293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~  372 (895)
T KOG2076|consen  293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK  372 (895)
T ss_pred             hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence            777799999998887632 2335567889999999999999999888887762222222211                  


Q ss_pred             --------HHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008105          331 --------NTLLHSLGSRGCWDAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTY  400 (577)
Q Consensus       331 --------~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  400 (577)
                              .-+.-++......+....+.....+..  +..+...|.-+..+|.+.|++.+|+.+|..+......-+...|
T Consensus       373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw  452 (895)
T KOG2076|consen  373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW  452 (895)
T ss_pred             CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence                    112223334444455555555555554  3335566777788888888888888888888876555567788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHH
Q 008105          401 NTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME--------NGISPDDITHRT  472 (577)
Q Consensus       401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~~~~~  472 (577)
                      -.+..+|...|.+++|...++...... +.+...--.|...+-+.|+.++|.+.+..+..        .+..|+......
T Consensus       453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~  531 (895)
T KOG2076|consen  453 YKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH  531 (895)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence            888888888888888888888877664 44455555666777788888888888887542        123333333334


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhC--------------------------------------------------------
Q 008105          473 LIWGFCRADQVEEAVDLLKEIGKR--------------------------------------------------------  496 (577)
Q Consensus       473 li~~~~~~g~~~~A~~~~~~m~~~--------------------------------------------------------  496 (577)
                      ..+.+...|+.++=......|+..                                                        
T Consensus       532 r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~  611 (895)
T KOG2076|consen  532 RCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTE  611 (895)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhh
Confidence            444455555554432222222110                                                        


Q ss_pred             -------CCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          497 -------GNKMRN--SAYRLVIHGLCKSKKVDMAIQVLELMISSRY--KPDD---TVFSTIVKKVADDGMTEEAYKLWQK  562 (577)
Q Consensus       497 -------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~  562 (577)
                             ++..+.  ..+..++..+++.+++++|..+...+.....  .++.   ..-...+.+....+++..|...+..
T Consensus       612 ~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~  691 (895)
T KOG2076|consen  612 FRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS  691 (895)
T ss_pred             hhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                   111110  1245567778888888888888888876421  2222   2234456677888888888888888


Q ss_pred             HHHc
Q 008105          563 LIEW  566 (577)
Q Consensus       563 ~~~~  566 (577)
                      |+..
T Consensus       692 ~i~~  695 (895)
T KOG2076|consen  692 VITQ  695 (895)
T ss_pred             HHHH
Confidence            7754

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=1.7e-13  Score=126.55  Aligned_cols=238  Identities=17%  Similarity=0.216  Sum_probs=135.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +..++..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-.-..    ..+++.+|......||..|+|+++.
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~  281 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS  281 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence            455666666666666666666666666655555666666666665433211    1556666666555666666666666


Q ss_pred             HHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH----HcCCCC----CHhhHHH
Q 008105          231 TMFDNGKFKQ----AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR-AIEVLDDMA----IEGCSP----DIVTYNS  297 (577)
Q Consensus       231 ~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----~~~~~~----~~~~~~~  297 (577)
                      +..+.|+++.    |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.    .+.++|    |..-|..
T Consensus       282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~  361 (625)
T KOG4422|consen  282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS  361 (625)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence            6666665543    34455556666666666666666666666655433 233333322    222222    3344455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCC----CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          298 LVNFSCKQGKYDDAVLVINNLLSRG----MEPN---SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILIN  370 (577)
Q Consensus       298 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  370 (577)
                      .+..|.+..+.+-|.++..-+....    +.|+   .+-|..+....|.....+.....++.|.-+-+-|+..+...++.
T Consensus       362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr  441 (625)
T KOG4422|consen  362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR  441 (625)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence            5666666666666665554443221    1222   22445555666666666666777777666555566666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCC
Q 008105          371 GLCKYGLVDRAINSFNQMVSKN  392 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~~  392 (577)
                      +..-.|.++-.-+++.++...|
T Consensus       442 A~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  442 ALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             HHhhcCcchhHHHHHHHHHHhh
Confidence            6666666666666666665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.73  E-value=3.3e-12  Score=124.19  Aligned_cols=435  Identities=11%  Similarity=0.027  Sum_probs=261.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .++..|...+    ...+.++|+.++.+..+. ++.+..    |..+|++..-|+.|.+++....+. ++.+...|.+-.
T Consensus       378 ~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa  447 (913)
T KOG0495|consen  378 RSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAA  447 (913)
T ss_pred             chHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence            3455554433    334555666666666664 222323    333455555566666666666553 345556665555


Q ss_pred             HHHHhcCChHHHHHHHHHH----hhCCCCCCHHH-------------------------------------HHHHHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEM----SVSGCEPDVIT-------------------------------------YNTILRTMF  233 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~-------------------------------------~~~li~~~~  233 (577)
                      ..--.+|+.+...+++++-    ...|+..+...                                     |+.-...|.
T Consensus       448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~  527 (913)
T KOG0495|consen  448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE  527 (913)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence            5555566665555555432    23344444443                                     444444445


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      +.+.++-|..+|...++. .+-+...|......--..|..+.-..+|++.... ++.....|-.....+-..|++..|+.
T Consensus       528 k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~  605 (913)
T KOG0495|consen  528 KRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARV  605 (913)
T ss_pred             hcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHH
Confidence            555555555555555543 2334444554444444556666666666666654 23344556666666667777777777


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008105          314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC  393 (577)
Q Consensus       314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  393 (577)
                      ++.+..+.... +...|-+-+..-....+++.|..+|.+....+  |+..+|.--+..-.-.+..++|++++++.++. +
T Consensus       606 il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s--gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f  681 (913)
T KOG0495|consen  606 ILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS--GTERVWMKSANLERYLDNVEEALRLLEEALKS-F  681 (913)
T ss_pred             HHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC--CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence            77777766422 45567777777777777888888877776543  56666666666666667778888887777765 2


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL  473 (577)
Q Consensus       394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  473 (577)
                      +.-...|..+.+.+-+.++.+.|...|..-.+. ++.....|-.|...--+.|.+-+|..++++..-.+ +-+...|...
T Consensus       682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~  759 (913)
T KOG0495|consen  682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLES  759 (913)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHH
Confidence            333445566666677777777777776655443 34455567777666677778888888888877654 3467778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCC-----------------------------CCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105          474 IWGFCRADQVEEAVDLLKEIGKRG-----------------------------NKMRNSAYRLVIHGLCKSKKVDMAIQV  524 (577)
Q Consensus       474 i~~~~~~g~~~~A~~~~~~m~~~~-----------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~  524 (577)
                      |.+-.+.|+.+.|..+..+..+.-                             ..-|+...-.+...+....++++|.+.
T Consensus       760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W  839 (913)
T KOG0495|consen  760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW  839 (913)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888877776665431                             112333344455555566666777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          525 LELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       525 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      |.+.++.+ +.+..+|.-+.+-+.++|.-++-.+++++.....|
T Consensus       840 f~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  840 FERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             HHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            77766432 22356666666666777766666666666655433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=7.7e-12  Score=117.25  Aligned_cols=440  Identities=12%  Similarity=0.089  Sum_probs=324.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...|-...+-=..++++..|.++|++++... ..+...|...+.+=.+...+..|..+++..+..-+..| ..|--.+.
T Consensus        72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y  149 (677)
T KOG1915|consen   72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence            44556666666677888899999999999875 44777888888888899999999999999987643333 34555666


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      +=-..|++.-|.++|++-..-  .|+...|++.|..-.+-+..+.|..+|++.+-  +.|+..+|--....-.+.|++..
T Consensus       150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence            666789999999999988765  79999999999999999999999999999875  46999999988888889999999


Q ss_pred             HHHHHHHHHHc-C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHH---
Q 008105          276 AIEVLDDMAIE-G-CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKI---  349 (577)
Q Consensus       276 A~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~---  349 (577)
                      |..+|+...+. | -..+...+.+....=.++..++.|.-+|+-.+++=.+-. ...|..+...=-+-|+.......   
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            99999887763 1 011223455555555577888999999988887622211 22344444333445655444433   


Q ss_pred             -----HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--------HHHhcCChh
Q 008105          350 -----LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV--TYNTVLG--------ALCKEGMLN  414 (577)
Q Consensus       350 -----~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~--------~~~~~g~~~  414 (577)
                           ++.+.+.+ +.|..+|--.+..-...|+.+...++|++.+.. ++|-..  .|...|-        .-....+.+
T Consensus       306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                 23344333 457778888888888889999999999998876 355221  1211111        112457888


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105          415 EALQLLHLLNGSSCSPCLITYNTLIDGL----AKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLL  490 (577)
Q Consensus       415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  490 (577)
                      .+.++++...+. ++....||.-+--.|    .++.++..|.+++...+  |.-|...+|...|..-.+.++++.+..++
T Consensus       384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLY  460 (677)
T KOG1915|consen  384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLY  460 (677)
T ss_pred             HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence            889999888773 455666766554444    46788899999988876  45688889999999888999999999999


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          491 KEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY-KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       491 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      ++..+.+.. +..+|......-...|+.+.|..+|+-+++.+. ......|.+.++--...|.++.|..+++++++..
T Consensus       461 Ekfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  461 EKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            999887633 777888888878888999999999998886432 1224556777777788899999999999998754

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.8e-11  Score=114.74  Aligned_cols=438  Identities=13%  Similarity=0.067  Sum_probs=328.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ..+...|-..+.+=.++.....|+.++++.+..-+. -...|...+..=-..|++..|.++|+...+-  .|+...|++.
T Consensus       104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sf  180 (677)
T KOG1915|consen  104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSF  180 (677)
T ss_pred             cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHH
Confidence            356788999999999999999999999999986333 3344666666667789999999999999865  8999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcC
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK-G-CPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g  271 (577)
                      |+.=.+...++.|..++++..-.  .|++.+|--..+.-.++|+...|..+|+...+. | -..+...+.+....-.++.
T Consensus       181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk  258 (677)
T KOG1915|consen  181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK  258 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865  699999999999999999999999999988764 1 1112333444444445677


Q ss_pred             CHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCH---HHHHH-----HHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105          272 GIARAIEVLDDMAIEGCSPD--IVTYNSLVNFSCKQGKY---DDAVL-----VINNLLSRGMEPNSITYNTLLHSLGSRG  341 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~---~~A~~-----~~~~m~~~g~~p~~~~~~~ll~~~~~~g  341 (577)
                      .++.|.-+|+-.+.. ++.+  ...|..+...=-+-|+.   ++++-     -++.+.+.+ +.|-.+|-..++.-...|
T Consensus       259 E~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g  336 (677)
T KOG1915|consen  259 EYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVG  336 (677)
T ss_pred             HHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcC
Confidence            789999999888765 2222  34455554444444553   33332     244444443 446678888888888899


Q ss_pred             CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 008105          342 CWDAVDKILDIMNEASHSPTV--FTYNILING--------LCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGAL----  407 (577)
Q Consensus       342 ~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----  407 (577)
                      +.+...++++.....- +|-.  ..|...|-.        =....+.+.+.++|+..++. ++....||.-+--.|    
T Consensus       337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe  414 (677)
T KOG1915|consen  337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE  414 (677)
T ss_pred             CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence            9999999999998763 3321  122222211        12468899999999999885 555666766654444    


Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          408 CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       408 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  487 (577)
                      .++.++..|.+++.....  ..|...+|...|..-.+.++++.+..++++.++.+ +-+..+|......-...|+.+.|.
T Consensus       415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR  491 (677)
T KOG1915|consen  415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR  491 (677)
T ss_pred             HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence            467899999999988775  47888999999999999999999999999999975 346788888888888899999999


Q ss_pred             HHHHHHhhCC-CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcC----------
Q 008105          488 DLLKEIGKRG-NKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVA-----DDG----------  551 (577)
Q Consensus       488 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-----~~g----------  551 (577)
                      .+|+-..... .......|...|+--...|.++.|..+++++++.  .+...+|.++..--.     +.|          
T Consensus       492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~  569 (677)
T KOG1915|consen  492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITD  569 (677)
T ss_pred             HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcch
Confidence            9999987642 3334567888888888999999999999999964  344556766654332     334          


Q ss_pred             -CHHHHHHHHHHHHH
Q 008105          552 -MTEEAYKLWQKLIE  565 (577)
Q Consensus       552 -~~~~A~~~~~~~~~  565 (577)
                       ....|..+|++...
T Consensus       570 ~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  570 ENIKRARKIFERANT  584 (677)
T ss_pred             hHHHHHHHHHHHHHH
Confidence             45677777777643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.70  E-value=1.7e-11  Score=119.40  Aligned_cols=387  Identities=12%  Similarity=0.066  Sum_probs=273.6

Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 008105          148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY  225 (577)
Q Consensus       148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~  225 (577)
                      +..+...|..=...|-+.|-.-.+..+....+..|+.-  -..+|+.-.+.|.+.+.++-|..+|....+.- +.+...|
T Consensus       475 v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slW  553 (913)
T KOG0495|consen  475 VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLW  553 (913)
T ss_pred             eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHH
Confidence            33333333333333333333333333444333333221  12345555566667777777777777776552 4466677


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 008105          226 NTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ  305 (577)
Q Consensus       226 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  305 (577)
                      ......--..|..++...+|++.... ++.....|......+...|++..|..++..+.... +.+...|-..+..-...
T Consensus       554 lra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en  631 (913)
T KOG0495|consen  554 LRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEN  631 (913)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhcc
Confidence            77776666788888888888888865 56667777777778888899999999998888764 33677888888888889


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105          306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSF  385 (577)
Q Consensus       306 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  385 (577)
                      .+++.|..+|.+....  .|+...|.--+..---.+..++|.+++++..+. ++.-...|-.+.+.+-+.++.+.|.+.|
T Consensus       632 ~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  632 DELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             ccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            9999999999888765  566666666566556678889999998888775 2334456777788888888888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 008105          386 NQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN----  461 (577)
Q Consensus       386 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  461 (577)
                      ..-.+. ++..+..|..+...--+.|.+-.|..+++...-++ +.+...|-..|++-.+.|..+.|..+..+..+.    
T Consensus       709 ~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s  786 (913)
T KOG0495|consen  709 LQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS  786 (913)
T ss_pred             Hhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence            766554 45566677777777777888888888888887765 677888888888888888888888777665542    


Q ss_pred             C-------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105          462 G-------------------------ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK  516 (577)
Q Consensus       462 g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  516 (577)
                      |                         ..-|+.....+...+....+++.|.+.|.+.++.+.. +..+|..+...+.++|
T Consensus       787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHG  865 (913)
T ss_pred             chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence            1                         1124444555666667778899999999999987633 5678988999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 008105          517 KVDMAIQVLELMISSRYKPD-DTVFSTIVK  545 (577)
Q Consensus       517 ~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~  545 (577)
                      .-++-.+++......  .|. ...|.++-+
T Consensus       866 ~eed~kev~~~c~~~--EP~hG~~W~avSK  893 (913)
T KOG0495|consen  866 TEEDQKEVLKKCETA--EPTHGELWQAVSK  893 (913)
T ss_pred             CHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence            999999999988753  454 344555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=4e-12  Score=128.41  Aligned_cols=396  Identities=15%  Similarity=0.108  Sum_probs=223.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      ......+.+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-...... +.|...|..+.....
T Consensus       141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            33333444445588888888888887775 4566777888888888888888777665554443 556677887777778


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTY----NSLVNFSCKQGKYD  309 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~  309 (577)
                      +.|++++|.-+|.+.++.. |++...+---...|-+.|+...|.+-|.++.....+.|..-.    -..+..+...++.+
T Consensus       219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            8888888888888877764 555555555566777778888888888877765322222222    22345566666667


Q ss_pred             HHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          310 DAVLVINNLLSR-GMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM  388 (577)
Q Consensus       310 ~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  388 (577)
                      .|.+.++..... +-..+...++.++..+.+...++.+......+......+|..-|..-    .+ ++     .-+...
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----~~-~~-----~~~~~~  367 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----ER-RR-----EEPNAL  367 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----hh-cc-----cccccc
Confidence            777777766652 12234446667777777777777777666666553333332222100    00 00     000000


Q ss_pred             H--HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008105          389 V--SKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS--CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS  464 (577)
Q Consensus       389 ~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  464 (577)
                      .  ..+..++..++ .+.-++......+....+........  +..+...|.-+..+|...|++.+|..+|..+......
T Consensus       368 ~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~  446 (895)
T KOG2076|consen  368 CEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY  446 (895)
T ss_pred             ccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence            0  01122222221 11222233333333333333333333  2334455666666666666666666666666654333


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCC
Q 008105          465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS--------SRYKPD  536 (577)
Q Consensus       465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~  536 (577)
                      -+...|-.+..+|...|.+++|.+.++....... .+...--.|...+-+.|+.++|.+.++.+..        .+..|+
T Consensus       447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e  525 (895)
T KOG2076|consen  447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE  525 (895)
T ss_pred             cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence            3455666666666666666666666666665321 1233334455556666666666666666431        234455


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          537 DTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       537 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      ........+.+...|+.++-......|+
T Consensus       526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  526 RRILAHRCDILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5555556666667777666555444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.64  E-value=2.7e-12  Score=127.66  Aligned_cols=284  Identities=10%  Similarity=0.015  Sum_probs=186.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 008105          270 QCGIARAIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYN--TLLHSLGSRGCWDAV  346 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a  346 (577)
                      .|+++.|.+.+....+..  +++.. |.....+..+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            466666666665544431  11222 222233446677777777777777654  34433222  224556667777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHH
Q 008105          347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI-------VTYNTVLGALCKEGMLNEALQL  419 (577)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~  419 (577)
                      ...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77777776665 345666677777777777777777777777766533222       1223333333344455566666


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105          420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK  499 (577)
Q Consensus       420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  499 (577)
                      ++.+.+. .+.+......+...+...|+.++|.+++++..+.  .||....  ++.+....++.+++.+..+...+... 
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-  325 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-  325 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-
Confidence            6665443 2556777788888888888888888888888774  4555322  23333455888888888888877542 


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      -|...+.++...+.+.|++++|.+.|+.+.+  ..|+...+..+...+.+.|+.++|.+++++-+..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3556677888888889999999999988885  4688888888888899999999998888877653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=1.8e-11  Score=114.69  Aligned_cols=365  Identities=13%  Similarity=0.026  Sum_probs=242.3

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHH-HH
Q 008105          149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-VIT-YN  226 (577)
Q Consensus       149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~-~~  226 (577)
                      ..|...+......+.+.|....|+..|...+..- +..-..|..|.+..   -+.+.    ...... |.+.| ... =-
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~~~  231 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMKKF  231 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHHHH
Confidence            3455545555555667777888888877776432 22333333333222   22222    222221 11211 111 11


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHh
Q 008105          227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS--PDIVTYNSLVNFSCK  304 (577)
Q Consensus       227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~  304 (577)
                      -+..++......+++++-.+.....|.+-+...-+....+.....++++|..+|+++.+...-  -|..+|+.++-  .+
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~  309 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence            234455566677888888888887777666655555555666778899999999998876311  15567776663  33


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105          305 QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINS  384 (577)
Q Consensus       305 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  384 (577)
                      +.+..-  .++.+-...--+--..|...+.+.|+-.++.+.|...|++..+.+. .....|+.+..-|....+...|++.
T Consensus       310 ~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  310 NDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             hhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHH
Confidence            332221  1221111111123345777778888888899999999999888763 3567788888899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008105          385 FNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS  464 (577)
Q Consensus       385 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  464 (577)
                      ++..++.+ +.|-..|-.+.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|++.|.+....|- 
T Consensus       387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-  463 (559)
T KOG1155|consen  387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-  463 (559)
T ss_pred             HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence            99988875 6788889999999999999999999998888764 66888999999999999999999999999887652 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGK----RGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .+...+..|...|-+.++.++|...|++-++    .|...+  ...-..|..-+.+.+++++|..+......
T Consensus       464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            3557888888999999999999888887654    232212  12222345556677888888776665543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.63  E-value=3.4e-12  Score=127.01  Aligned_cols=282  Identities=11%  Similarity=0.017  Sum_probs=155.1

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYN-TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYT--ILIEQVCKQCGIARA  276 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A  276 (577)
                      .|+++.|.+.+....+.+  +++..+. .......+.|+++.|.+.+.++.+.  .|+.....  .....+...|++++|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            466666665555544331  1222222 2223335566666666666666543  33332211  224455566666666


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHH
Q 008105          277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS-------ITYNTLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~  349 (577)
                      .+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66666665553 224455556666666666666666666666655433211       1222222222233344444455


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008105          350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS  429 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  429 (577)
                      ++.+.+. .+.++.....+...+...|+.++|.+.+++..+.  +|+....  ++.+....++.+++.+..+...+.. +
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence            5444332 2345666666677777777777777777766663  3444221  2233334466777777776666554 4


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      .|...+..+...+.+.+++++|.+.|+...+.  .|+...+..+...+.+.|+.++|.+++++..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45556666677777777777777777777663  4676666677777777777777777776654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=8.3e-13  Score=122.81  Aligned_cols=402  Identities=15%  Similarity=0.120  Sum_probs=273.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCC------HHHHHHHH
Q 008105          157 NLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITY-NMMVGGLCKRGQIRSAIALLDEMSVSGCEPD------VITYNTIL  229 (577)
Q Consensus       157 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~~~li  229 (577)
                      .|..-|....-..+|+..++-+++...-|+.-.. -.+.+.+.+...+.+|++.++.....  .|+      ....+.+.
T Consensus       206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~nig  283 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIG  283 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcC
Confidence            3455566667788899999999887666665443 23456788889999999999877654  232      33445555


Q ss_pred             HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------CCHhhHHH
Q 008105          230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS------------PDIVTYNS  297 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~  297 (577)
                      -.+.+.|.++.|+..|+...+.  .||..+-..|+-.+..-|+-++..+.|.+|...-..            |+....+.
T Consensus       284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e  361 (840)
T KOG2003|consen  284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE  361 (840)
T ss_pred             eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence            6678899999999999998875  578777666777777789999999999999764222            33333332


Q ss_pred             HHH-----HHHhcCC--HHHHHHHHHHHhhCCCCCCHHH---H----------H--------HHHHHHHccCCHHHHHHH
Q 008105          298 LVN-----FSCKQGK--YDDAVLVINNLLSRGMEPNSIT---Y----------N--------TLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       298 li~-----~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~---~----------~--------~ll~~~~~~g~~~~a~~~  349 (577)
                      .|.     -.-+..+  .++++-.--++..--+.|+-..   |          .        .-..-+.+.|+++.|.++
T Consensus       362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei  441 (840)
T KOG2003|consen  362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI  441 (840)
T ss_pred             HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence            221     1212211  1222222222222222232110   0          0        012357899999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHH------------------------------------HHHHHcCCHHHHHHHHHHHHHCCC
Q 008105          350 LDIMNEASHSPTVFTYNILI------------------------------------NGLCKYGLVDRAINSFNQMVSKNC  393 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~li------------------------------------~~~~~~g~~~~A~~~~~~m~~~~~  393 (577)
                      +.-+.+...+.-...-+.|-                                    +.....|++++|.+.|++.+..+.
T Consensus       442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda  521 (840)
T KOG2003|consen  442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA  521 (840)
T ss_pred             HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence            98876543221111111100                                    001135789999999999886532


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTL  473 (577)
Q Consensus       394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  473 (577)
                      .-....|+ +.-.+-..|++++|++.|-.+... +..+..+...+.+.|-...+..+|++++.+.... ++.|+.....|
T Consensus       522 sc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl  598 (840)
T KOG2003|consen  522 SCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKL  598 (840)
T ss_pred             HHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHH
Confidence            21222222 233466789999999998766543 2346777788888899999999999999877653 56678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC
Q 008105          474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK-KVADDGM  552 (577)
Q Consensus       474 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~  552 (577)
                      ...|-+.|+-..|.+.+-+--+. ++-+..+...+..-|....-+++|+.+|++..  -++|+..-|..++. ++.+.|+
T Consensus       599 ~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgn  675 (840)
T KOG2003|consen  599 ADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGN  675 (840)
T ss_pred             HHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhccc
Confidence            99999999999998887655443 45578888888888999999999999999986  57999999998775 5677999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 008105          553 TEEAYKLWQKLIEWKV  568 (577)
Q Consensus       553 ~~~A~~~~~~~~~~~~  568 (577)
                      ++.|..+++..-.+-|
T Consensus       676 yqka~d~yk~~hrkfp  691 (840)
T KOG2003|consen  676 YQKAFDLYKDIHRKFP  691 (840)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999999998876433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=7.8e-11  Score=110.48  Aligned_cols=365  Identities=12%  Similarity=0.024  Sum_probs=254.3

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHH
Q 008105          184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI--TYT  261 (577)
Q Consensus       184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~  261 (577)
                      ..|.+.+-.....+-+.|....|...|.+....    -+..|.+.+....-..+.+.+    .... .+.+.|..  .--
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~----~~l~-~~l~~~~h~M~~~  231 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEIL----SILV-VGLPSDMHWMKKF  231 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHH----HHHH-hcCcccchHHHHH
Confidence            445554444445555677777777777766633    122233322222111222222    1111 12222211  111


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHc
Q 008105          262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME--PNSITYNTLLHSLGS  339 (577)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~  339 (577)
                      -+..++-...+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+..+-  -|..+|+.++-.-..
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence            233456666688888888888888887766666566666777889999999999999987311  255677777644332


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008105          340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQL  419 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  419 (577)
                      ...+.-.......+.    +--+.|...+.+-|+-.++.+.|...|++.++.+ +.....|+.+.+-|....+...|..-
T Consensus       312 ~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             hHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence            222211111111121    2344577788888999999999999999999986 56778899999999999999999999


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105          420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK  499 (577)
Q Consensus       420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  499 (577)
                      ++...+.. +.|-..|-.|.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|.+.|......| +
T Consensus       387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d  463 (559)
T KOG1155|consen  387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D  463 (559)
T ss_pred             HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence            99999876 7789999999999999999999999999998752 4578999999999999999999999999998866 3


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          500 MRNSAYRLVIHGLCKSKKVDMAIQVLELMIS----SRYKPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      .+...+..+.+.+-+.++..+|...+++.++    .|...+  .....-|..-+.+.+++++|..+......
T Consensus       464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            3678899999999999999999999988775    233322  12222255567788888888776655544

>TIGR00540 hemY_coli hemY protein

Probab=99.62  E-value=3.4e-12  Score=127.74  Aligned_cols=291  Identities=12%  Similarity=0.027  Sum_probs=181.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 008105          268 CKQCGIARAIEVLDDMAIEGCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV  346 (577)
Q Consensus       268 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  346 (577)
                      ...|+++.|.+.+.+..+.  .|+. ..+-....+..+.|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            3456777777776665554  2332 223333455666677777777777766542222222333345566667777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHH
Q 008105          347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYN-TVLGAL---CKEGMLNEALQLLHL  422 (577)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~  422 (577)
                      ...++.+.+.. |.+...+..+...+.+.|++++|.+.+..+.+.+.. +...+. ....++   ...+..+++...+..
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            77777777664 335566677777777777777777777777776533 222221 111111   222222222233333


Q ss_pred             HhhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          423 LNGSS---CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT---HRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       423 ~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      +.+..   .+.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.+++..+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            33321   12367778888888888888888888888888753  44331   111122223457778888888887764


Q ss_pred             CCCccH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          497 GNKMRN--SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       497 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      .. -|.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+.
T Consensus       329 ~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            21 233  556788888999999999999999544335578988888999999999999999999988754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=5.4e-12  Score=126.25  Aligned_cols=132  Identities=11%  Similarity=-0.051  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 008105          326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT-YNILINGLCKYGLVDRAINSFNQMVSKNCQPDI--VTYNT  402 (577)
Q Consensus       326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~  402 (577)
                      +...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+.. +-|+  ....+
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s  340 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA  340 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence            344444455555555555555555555554321111000 0111111122344555555555555442 2233  34445


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          403 VLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM  458 (577)
Q Consensus       403 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  458 (577)
                      +...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55556666666666666663322223455555556666666666666666666654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=8.5e-15  Score=139.15  Aligned_cols=261  Identities=18%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008105          297 SLVNFSCKQGKYDDAVLVINNLLSRGMEP-NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY  375 (577)
Q Consensus       297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  375 (577)
                      .+...+.+.|++++|++++++......+| |...|..+.......++++.|...++.+.+.+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            44666777788888888886544443123 3344444555566677888888888888776533 55566667666 677


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-CSPCLITYNTLIDGLAKKGCMEKAMVL  454 (577)
Q Consensus       376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~  454 (577)
                      +++++|.+++.+..+.  .+++..+...+..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888776655  3566667778888888888888888888866432 345677788888888889999999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105          455 YGQMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY  533 (577)
Q Consensus       455 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  533 (577)
                      +++..+.  .| |......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..++++..+.. 
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            9988875  35 46677888888888888888888888876653 3455667788888888899999999999887632 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       534 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      +.|+.+...+.+++...|+.++|.++..++.+
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            44777888888899999999999888777654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.59  E-value=1e-14  Score=138.67  Aligned_cols=259  Identities=14%  Similarity=0.137  Sum_probs=60.1

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      .+...+.+.|++++|++++++..... .+.|...|..+.......++++.|++.++++...+. -+...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence            34555566666666666664443332 122333333333444445556666666666555432 234444444444 455


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105          201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEV  279 (577)
Q Consensus       201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  279 (577)
                      +++++|.+++++..+.  .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5555555555544433  2344444455555555555555555555544321 223444444455555555555555555


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 008105          280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS  359 (577)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  359 (577)
                      +++..+.. +.|....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|...++...+.. +
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            55555442 1123444445555555555555444444444332 1222333444444444444444444444444322 2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          360 PTVFTYNILINGLCKYGLVDRAINSFNQ  387 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~  387 (577)
                      .|+.+...+.+++.+.|+.++|.++..+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             T-HHHHHHHHHHHT--------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            2444444444444444444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=4e-11  Score=113.05  Aligned_cols=393  Identities=16%  Similarity=0.132  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPD-FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGG  196 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~  196 (577)
                      .+....+-|.++|++++|++.|.+.++.  .|+ +..|.....+|...|+|++..+--.+.++.+  |+ +..+..-..+
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA  192 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence            3556678889999999999999999986  566 7778888899999999999999888888764  33 3345555566


Q ss_pred             HHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHHc--
Q 008105          197 LCKRGQIRSAIALLDEMSVS-GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-KG--CPPYLITYTILIEQVCKQ--  270 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~--  270 (577)
                      +-..|++++|+.=..-..-. |+ .|..+--.+=+.+-     ..|..-.++-.+ .+  +-|+.....+....+...  
T Consensus       193 ~E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~  266 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK  266 (606)
T ss_pred             HHhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence            67777777765422211111 11 11111111111111     112222222222 11  224443333333222110  


Q ss_pred             -----------------------C---CHHHHHHHHHHHHHc-CCCCCH-----------hhHHHHHHHHHhcCCHHHHH
Q 008105          271 -----------------------C---GIARAIEVLDDMAIE-GCSPDI-----------VTYNSLVNFSCKQGKYDDAV  312 (577)
Q Consensus       271 -----------------------g---~~~~A~~~~~~~~~~-~~~~~~-----------~~~~~li~~~~~~g~~~~A~  312 (577)
                                             +   .+..|.+.+.+-... -..++.           .+...-...+.-.|+.-.|.
T Consensus       267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~  346 (606)
T KOG0547|consen  267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ  346 (606)
T ss_pred             ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence                                   0   112222221111100 000000           01111111123345555555


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105          313 LVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN  392 (577)
Q Consensus       313 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  392 (577)
                      .-|+..++....++. .|.-+...|....+.++..+.|....+.+. -++.+|..-.+.+.-.+++++|..=|++.+...
T Consensus       347 ~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~  424 (606)
T KOG0547|consen  347 EDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD  424 (606)
T ss_pred             hhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            666655555332222 144444455555666666666665555442 244455555555555566666666666655543


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------
Q 008105          393 CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD------  466 (577)
Q Consensus       393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------  466 (577)
                       +.+...|-.+.-+..+.+.++++...|++..++ ++..+..|+.....+...+++++|.+.|+..++.  .|+      
T Consensus       425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v  500 (606)
T KOG0547|consen  425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIV  500 (606)
T ss_pred             -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccc
Confidence             334444444444444555666666666665554 2444555666666666666666666666665542  122      


Q ss_pred             -H--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          467 -D--ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       467 -~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                       .  ..--.++..- -.+++..|.+++++..+.+.+ ....|..|...-.+.|+.++|+++|++..
T Consensus       501 ~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  501 NAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             cchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence             1  1111111111 125566666666665554322 23445555555666666666666666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.4e-12  Score=126.10  Aligned_cols=289  Identities=13%  Similarity=0.056  Sum_probs=210.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM--EPNSITYNTLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~  349 (577)
                      +..+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+...  .-+...|++.+..+-+    +-+...
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            467788888885554 222335556677888888888888888888876521  1255677777755432    112222


Q ss_pred             H-HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 008105          350 L-DIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC  428 (577)
Q Consensus       350 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  428 (577)
                      + +.+.+. .+..+.+|.++.+.|.-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+...... 
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            2 222222 23567889999999999999999999999988764 3377888888888888889999999998887654 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 008105          429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLV  508 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l  508 (577)
                      +-+...|..+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.++|++++++....+.+ |+..--..
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence            3344566677888899999999999999988753 235566677777888889999999999998876544 33333345


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKG  572 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (577)
                      +..+...+++++|...++++.+  +.|+ ..++..+.+.|.+.|+.+.|..-|.-+.+.+|++..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            6667788999999999999885  3454 566777888999999999998888888777766654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=4.4e-11  Score=107.09  Aligned_cols=272  Identities=15%  Similarity=0.135  Sum_probs=173.6

Q ss_pred             cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHH
Q 008105          130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMVGGLCKRGQIRSA  206 (577)
Q Consensus       130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A  206 (577)
                      +++.++|..+|-+|.+.. +.+..+..+|.+.|.+.|..++|+.+++.+.++.--+.   ....-.|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            567889999999998853 33666777788999999999999999999887521111   22344566778888999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          207 IALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYL----ITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                      .++|..+.+.| .--......|+..|-...+|++|++.-+++.+.+-.+..    ..|.-|...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99998888654 344566778888888888888888888888776533332    2344455555556667777777777


Q ss_pred             HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105          283 MAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV  362 (577)
Q Consensus       283 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  362 (577)
                      ....+ +..+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+..  +..
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~  282 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA  282 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence            76653 112222233445666677777777777777666443334455666666667777766666666666543  222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC  408 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  408 (577)
                      ..-..+-..-....-.+.|...+.+-+..  +|+...+..+++.-.
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l  326 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL  326 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence            23333333333333445555554444443  566666666665543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.54  E-value=1.6e-10  Score=106.81  Aligned_cols=290  Identities=12%  Similarity=0.057  Sum_probs=202.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 008105          270 QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~  349 (577)
                      .|++.+|.++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++....-+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            56777777777666555422 23445555566667777777777777777664445555666666667777777777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHH
Q 008105          350 LDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI-------VTYNTVLGALCKEGMLNEALQLLHL  422 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~  422 (577)
                      .+++.+.+. .++........+|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            777776653 45666777777788888888888888777777655444       3566666665555555555556665


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCcc
Q 008105          423 LNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMR  501 (577)
Q Consensus       423 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~  501 (577)
                      ...+ .+.++..-.+++.-+.+.|+.++|.++..+..+++..|.    -...-.+.+-++.+.-.+..++-.+ .+.  +
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~  327 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--D  327 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence            5443 244566667788888889999999999888888766555    1122234566777777777766555 333  3


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105          502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE  570 (577)
Q Consensus       502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (577)
                      +..+.++...|.+.+.|.+|.+.|+...  ...|+..+|..+.+++.+.|+.++|.+..++.+-.-..|
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            4677888899999999999999999777  457899999999999999999999998888877443333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=2.2e-10  Score=105.98  Aligned_cols=286  Identities=13%  Similarity=0.070  Sum_probs=170.9

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEV  279 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  279 (577)
                      .|++.+|+++..+-.+.+ +.....|..-+.+--+.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            456666666655555444 2223334444444445556666655555554432233444444555555556666666665


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHH
Q 008105          280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS-------ITYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      .+++.+.+ +..+........+|.+.|++.+...++.++.+.|.-.|.       .+|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            55555543 224445555566666666666666666666665544332       3455555555555555555555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL  432 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~  432 (577)
                      ..+. .+.++..-.+++.-+.++|+.++|.++..+..+++..|...    ..-.+.+-++.+.-.+..+...+.. +.++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            5432 23355566677777788888888888888887776555411    1223445566666666665554442 4445


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ..+.+|...|.+.+.|.+|...|+...+.  .|+..+|+.+.+++.+.|+.++|.+..++...
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            67777888888888888888888877664  47888888888888888888888888777654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=3.2e-11  Score=121.38  Aligned_cols=441  Identities=15%  Similarity=0.092  Sum_probs=251.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 008105          108 SDGPFVENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT  187 (577)
Q Consensus       108 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~  187 (577)
                      +...|+.||.+||.++|.-||..|+.+.|- +|..|.-+..+.+...++.++.+..+.++.+.+.           .|-+
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a   83 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA   83 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence            445678899999999999999999999988 8888877666666666666666666666655554           4556


Q ss_pred             HHHHHHHHHHHhcCChHH---HHHHHHHHh----hCCC-----------------CCCHHHHHHHHHHHHhCCChHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRS---AIALLDEMS----VSGC-----------------EPDVITYNTILRTMFDNGKFKQAIG  243 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~---A~~~~~~~~----~~g~-----------------~~~~~~~~~li~~~~~~~~~~~A~~  243 (577)
                      .+|+.|..+|...|++..   ..+.++.+.    ..|+                 -||..+   .+.-..-.|-++.+++
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK  160 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence            667777777777766443   222111111    1121                 112111   1111111111222222


Q ss_pred             HHH-----------------------------HHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 008105          244 FWK-----------------------------DQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV  293 (577)
Q Consensus       244 ~~~-----------------------------~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  293 (577)
                      ++.                             .+.+... .|+..+|.+++..-...|+++.|..++.+|.++|++.+..
T Consensus       161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H  240 (1088)
T KOG4318|consen  161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH  240 (1088)
T ss_pred             HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence            111                             1111111 4788888888888888888888888888888888887777


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHH------------------------HHH
Q 008105          294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV------------------------DKI  349 (577)
Q Consensus       294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a------------------------~~~  349 (577)
                      -|-.|+-+   .++..-+..+++-|...|+.|+..|+...+-.+.+.|....+                        .+.
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~  317 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR  317 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence            66666655   777777888888888888888888887666555443322111                        000


Q ss_pred             HHHH------------HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCC--
Q 008105          350 LDIM------------NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN--C-QPDIVTYNTVLGALCKEGM--  412 (577)
Q Consensus       350 ~~~~------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~~~~~li~~~~~~g~--  412 (577)
                      ++.-            .-.|......+|...+. ....|.-++..++-..+..--  . ..++..|..++.-|.+.-+  
T Consensus       318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~  396 (1088)
T KOG4318|consen  318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH  396 (1088)
T ss_pred             HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence            0000            00111112223332222 122455555555555554221  1 1123334333333322110  


Q ss_pred             --------------------hhHHHHHHHHHhhC----------------CCC-------CCHHHHHHHHHHHHhcCCHH
Q 008105          413 --------------------LNEALQLLHLLNGS----------------SCS-------PCLITYNTLIDGLAKKGCME  449 (577)
Q Consensus       413 --------------------~~~A~~~~~~~~~~----------------~~~-------p~~~~~~~li~~~~~~g~~~  449 (577)
                                          ..+..+........                ...       +-...-+.++..++..-+..
T Consensus       397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l  476 (1088)
T KOG4318|consen  397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL  476 (1088)
T ss_pred             HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence                                00111111110000                000       00111233444444444444


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCccHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008105          450 KAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR--GNKMRNSAYRLVIHGLCKSKKVDMAIQVLEL  527 (577)
Q Consensus       450 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  527 (577)
                      +++..-+.....-+   ...|..|+.-++...+.+.|..+..+....  .+..+..-+..+.+.+.+.+...++.+++++
T Consensus       477 K~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e  553 (1088)
T KOG4318|consen  477 KILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE  553 (1088)
T ss_pred             HHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence            44433333322111   145788888888888999999999888653  3345666788899999999999999999999


Q ss_pred             HHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105          528 MISSR-YKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE  570 (577)
Q Consensus       528 m~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (577)
                      +.+.- ..|+ ..++..++......|+.+.-.++.+-+...|+.-
T Consensus       554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            98631 2332 4566677888888999998888888887777644

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.9e-11  Score=118.56  Aligned_cols=285  Identities=11%  Similarity=0.046  Sum_probs=221.1

Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105          236 GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG--CSPDIVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       236 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      -+..+|+..|..+... +.-.......+..+|...+++++|.++|+.+.+..  ..-+...|.+.+..+-+.-    ++.
T Consensus       333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence            4567899999885443 44455667778889999999999999999998753  1125677877775543321    222


Q ss_pred             HH-HHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105          314 VI-NNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN  392 (577)
Q Consensus       314 ~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  392 (577)
                      .+ +.+.+.. +-...+|.++.++|.-+++.+.|.+.|++..+.+. ....+|+.+..-+.....+|.|...|+..+...
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            22 2233332 33568999999999999999999999999998652 367889999999999999999999999988653


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          393 CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT  472 (577)
Q Consensus       393 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  472 (577)
                       +-+..+|..+.-.|.+.++++.|+-.|+.+.+.+ +-+.+....+...+-+.|+.++|++++++..... +-|+..--.
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~  562 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH  562 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence             3344556667788999999999999999998876 6677778888888999999999999999998754 234555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          473 LIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       473 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      .+..+...+++++|+..++++.+.- +-+...|..+...|.+.|+.+.|+.-|.-|.+.
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            5666778899999999999998852 235667888999999999999999999988854

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.3e-10  Score=104.16  Aligned_cols=289  Identities=16%  Similarity=0.136  Sum_probs=171.1

Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY---LITYTILIEQVCKQCGIARA  276 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A  276 (577)
                      ..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+.+.+.++.-.+.   ......|..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            456677777777776542 23344445666667777777777777777665421111   12234455566777777777


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHH
Q 008105          277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI----TYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      .++|..+...+ .--......|+..|-...++++|+++-+++.+.+..+..+    .|.-+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            77777776543 2233455667777777777777777777777665444332    344444555556677777777777


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL  432 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~  432 (577)
                      ..+.+. ..+..--.+.+.+...|+++.|++.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+....  .
T Consensus       206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~  282 (389)
T COG2956         206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--A  282 (389)
T ss_pred             HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--c
Confidence            766542 2333444556667777777777777777777654444556667777777777777777777766655322  2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR---ADQVEEAVDLLKEIGK  495 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~  495 (577)
                      ..-..+...-....-.+.|...+.+-...  .|+...+..++..-..   .|...+.+.+++.|..
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            23333333333333445555554444433  4777777777765443   2345555666666654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=6.5e-09  Score=94.44  Aligned_cols=421  Identities=15%  Similarity=0.096  Sum_probs=253.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      +.-+....++..|+.+++--...+-.....+-.-+..++.+.|++++|...+..+.... .++...+-.|.-.+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            45566677888888888776644332222222234455667888888888888877654 56667777777666777888


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM  283 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  283 (577)
                      .+|..+-.+..     .++-.-..+...-.+.++-++-..+.+.+...     ..--.+|.+.....-.+++|.+++.++
T Consensus       108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            88887766553     23444444555555666666666655554332     122233444444455677788888777


Q ss_pred             HHcCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHc--cCCH----------------
Q 008105          284 AIEGCSPDIVTYNSLV-NFSCKQGKYDDAVLVINNLLSRGMEPNS-ITYNTLLHSLGS--RGCW----------------  343 (577)
Q Consensus       284 ~~~~~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~--~g~~----------------  343 (577)
                      ...  .|+-...|.-+ -.|.+..-++-+.++++-.++.  -||. .+.|.......+  .|+.                
T Consensus       178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~  253 (557)
T KOG3785|consen  178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY  253 (557)
T ss_pred             Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence            754  34444444433 3455666667677777666655  3332 233322211111  1111                


Q ss_pred             -----------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          344 -----------------DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA  406 (577)
Q Consensus       344 -----------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  406 (577)
                                       +.|.+++-.+.+.    -+..--.|+-.|.+.+++.+|..+.+++.-.  .|.......+.  
T Consensus       254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--  325 (557)
T KOG3785|consen  254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--  325 (557)
T ss_pred             hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--
Confidence                             1222222221111    1112233455678899999999988876422  23333322222  


Q ss_pred             HHhcC-------ChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          407 LCKEG-------MLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC  478 (577)
Q Consensus       407 ~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  478 (577)
                      ++..|       ...-|...|+..-+++...|.. --.++.+.+.-..++++++..+..+...-.. |...--.+.++++
T Consensus       326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~  404 (557)
T KOG3785|consen  326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKL  404 (557)
T ss_pred             HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHH
Confidence            22333       3455666666665555433332 2344556666677889998888888765333 3334445788999


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 008105          479 RADQVEEAVDLLKEIGKRGNKMRNSAY-RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTV-FSTIVKKVADDGMTEEA  556 (577)
Q Consensus       479 ~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A  556 (577)
                      ..|++.+|.++|-.+....++ |..+| ..+.++|.+++.++.|+.++-++   .-+.+... ...+..-|.+.+.+--|
T Consensus       405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyya  480 (557)
T KOG3785|consen  405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYA  480 (557)
T ss_pred             HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888766555 44555 55677889999999998887666   32223333 34455689999999999


Q ss_pred             HHHHHHHHHcCCCCCc
Q 008105          557 YKLWQKLIEWKVFEKG  572 (577)
Q Consensus       557 ~~~~~~~~~~~~~~~~  572 (577)
                      .+.|+.+...+|.|+.
T Consensus       481 aKAFd~lE~lDP~pEn  496 (557)
T KOG3785|consen  481 AKAFDELEILDPTPEN  496 (557)
T ss_pred             HHhhhHHHccCCCccc
Confidence            9999999888887763

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=2.1e-09  Score=103.59  Aligned_cols=60  Identities=18%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQ  176 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  176 (577)
                      .|+..---+.+++.-.|++++|..+...-.-.  ..|..+.......+.+..++++|..++.
T Consensus        47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~  106 (611)
T KOG1173|consen   47 NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLG  106 (611)
T ss_pred             CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555566889999999999998887654322  3467777777888889999999998888

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.43  E-value=2e-10  Score=115.72  Aligned_cols=248  Identities=16%  Similarity=0.116  Sum_probs=163.2

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 008105          139 LIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC  218 (577)
Q Consensus       139 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~  218 (577)
                      ++-.+...|+.||..||..+|..||..|+.+.|- +|..|.....+.+...++.++.+....++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4556777899999999999999999999999998 9999988888888899999999998889887775           


Q ss_pred             CCCHHHHHHHHHHHHhCCChHH---HHHHHHHHHH----CCC-----------------CCCHHHHHHHHHHHHHcCCHH
Q 008105          219 EPDVITYNTILRTMFDNGKFKQ---AIGFWKDQLR----KGC-----------------PPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       219 ~~~~~~~~~li~~~~~~~~~~~---A~~~~~~~~~----~~~-----------------~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      .|-..+|..|..+|...|++..   +.+.+..+..    .|+                 -||.   ...+....-.|-++
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa  156 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA  156 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence            6889999999999999999765   3332222211    111                 1121   12223333445555


Q ss_pred             HHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008105          275 RAIEVLDDMAIEGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM  353 (577)
Q Consensus       275 ~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  353 (577)
                      .+.+++..+..... .|..+    .++-+....  ....++.......--.|+..+|.+++.+-...|+.+.|..++..|
T Consensus       157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em  230 (1088)
T KOG4318|consen  157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM  230 (1088)
T ss_pred             HHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            55555544432210 01111    122222211  122222222222111477778888888777888888888888888


Q ss_pred             HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          354 NEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE  410 (577)
Q Consensus       354 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  410 (577)
                      .+.|.+.+..-|-.|+-+   .++..-+..+++-|...|+.|+..|+...+-.+.++
T Consensus       231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N  284 (1088)
T KOG4318|consen  231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN  284 (1088)
T ss_pred             HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence            888877777666666654   666777777777777778888877776665555543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=7.4e-10  Score=104.69  Aligned_cols=385  Identities=14%  Similarity=0.055  Sum_probs=262.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh
Q 008105          157 NLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFD  234 (577)
Q Consensus       157 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~  234 (577)
                      ...+-|.+.|++++|++.+.+.++.  .|| +.-|.....+|...|++++..+.-.+..+.  .|+ +..+..-.+++-.
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ  195 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence            3455688999999999999999986  566 778888999999999999999988888765  343 5566667778888


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHH-cC--CCCCHhhHHHHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD--------DMAI-EG--CSPDIVTYNSLVNFSC  303 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~-~~--~~~~~~~~~~li~~~~  303 (577)
                      .|++++|+.=.             |...+..++....-...+.+++.        +-.+ .+  +-|+.....+....+.
T Consensus       196 lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~  262 (606)
T KOG0547|consen  196 LGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH  262 (606)
T ss_pred             hccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence            88888876422             22222222222222222222222        2122 11  2233332222222211


Q ss_pred             h-------------------------c---CCHHHHHHHHHHHhhC---CCCCC---------HHHHHHHHHHHHccCCH
Q 008105          304 K-------------------------Q---GKYDDAVLVINNLLSR---GMEPN---------SITYNTLLHSLGSRGCW  343 (577)
Q Consensus       304 ~-------------------------~---g~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~g~~  343 (577)
                      .                         .   ..+..|...+.+-...   ....+         ..+.......+.-.|+.
T Consensus       263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~  342 (606)
T KOG0547|consen  263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS  342 (606)
T ss_pred             ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence            0                         0   0122222222221110   00111         11111112223457888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008105          344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLL  423 (577)
Q Consensus       344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  423 (577)
                      -.+..-|+..+.....++ ..|--+..+|....+.++....|++..+.+ +.++.+|..-.+.+.-.+++++|..-|+..
T Consensus       343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka  420 (606)
T KOG0547|consen  343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA  420 (606)
T ss_pred             hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764433 337778888999999999999999999886 667888888888888889999999999999


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----
Q 008105          424 NGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK----  499 (577)
Q Consensus       424 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----  499 (577)
                      .... +.+...|-.+.-+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+...+....    
T Consensus       421 i~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  421 ISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             hhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            8875 556777777777778899999999999999876 4555788999999999999999999999998764221    


Q ss_pred             -ccHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          500 -MRNSAY--RLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       500 -~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                       .+...+  ..++- +.-.+++..|.+++++..+.  .|. ...|..|...-.+.|+.++|+++|++...
T Consensus       499 ~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  499 IVNAAPLVHKALLV-LQWKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccchhhhhhhHhh-hchhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             122211  12221 22348999999999999854  443 56789999999999999999999998764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.41  E-value=3.7e-10  Score=104.35  Aligned_cols=202  Identities=14%  Similarity=0.052  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID  440 (577)
Q Consensus       361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  440 (577)
                      ....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            34556667777777788888888887777653 4456667777777777888888888887777654 445566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105          441 GLAKKGCMEKAMVLYGQMMENGI-SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD  519 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  519 (577)
                      .+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+... .+...+..+...+...|+++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHH
Confidence            78888888888888888876422 22345666677788888888888888888876532 24556777888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          520 MAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      +|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            888888888765 3445666777778888888888888888877653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.40  E-value=2e-07  Score=91.54  Aligned_cols=435  Identities=11%  Similarity=0.068  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +..|-..++.+.++|+...-+..|++.+..- +.....+|...+......+-.+-+..++++-++.    ++..-+..|.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence            4678888999999999999999999988753 2346678999999999999999999999999865    4455778889


Q ss_pred             HHHhcCChHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhCCChHHH---HHHHHHHHHCCCCCCH--HHHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVS-------GCEPDVITYNTILRTMFDNGKFKQA---IGFWKDQLRKGCPPYL--ITYTIL  263 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~~~~~~A---~~~~~~~~~~~~~~~~--~~~~~l  263 (577)
                      .+++.+++++|.+.+......       | +.+...|.-+-....++.+.-..   ..+++.+...  -+|.  ..|++|
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~g-kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SL  254 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKG-KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSL  254 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcc-cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHH
Confidence            999999999999999887632       2 44556677666666665443322   2333333322  3343  568999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHhhC
Q 008105          264 IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG----------------------KYDDAVLVINNLLSR  321 (577)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~~~  321 (577)
                      .+-|.+.|.++.|.++|++....  ..++.-|+.+-++|+.-.                      +++-.+.-|+.+...
T Consensus       255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r  332 (835)
T KOG2047|consen  255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR  332 (835)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence            99999999999999999988765  223333444444443221                      122233334444333


Q ss_pred             CC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008105          322 GM-----------EPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASH-----SPTVFTYNILINGLCKYGLVDRAINSF  385 (577)
Q Consensus       322 g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~  385 (577)
                      +.           ..+..+|..-+..  ..|+..+....+.+..+.--     -.-...|..+...|-..|+++.|..+|
T Consensus       333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif  410 (835)
T KOG2047|consen  333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF  410 (835)
T ss_pred             cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence            11           1122233332222  24555566666666654311     112346788888899999999999999


Q ss_pred             HHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-----------C------CHHHHHHHHHHHHhc
Q 008105          386 NQMVSKNCQPD---IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-----------P------CLITYNTLIDGLAKK  445 (577)
Q Consensus       386 ~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------p------~~~~~~~li~~~~~~  445 (577)
                      ++..+...+--   ..+|..-...=.+..+++.|+++++......-.           +      +...|...++.--..
T Consensus       411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~  490 (835)
T KOG2047|consen  411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL  490 (835)
T ss_pred             HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence            99887643222   345555556666777888888888766532211           1      223455666666667


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccH-HHHHHHHHHHHh---cCChHHH
Q 008105          446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRN-SAYRLVIHGLCK---SKKVDMA  521 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A  521 (577)
                      |-++....+++++++..+. ++.........+-...-++++.+++++-...-..|+. ..|+..+.-+.+   .-.++.|
T Consensus       491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra  569 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA  569 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            8888888888888876542 2222222222233445577777777766554333442 345555444432   3367788


Q ss_pred             HHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          522 IQVLELMISSRYKPDDTV--FSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       522 ~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      ..+|++.++ |.+|...-  |-.....=-+.|....|.+++++..
T Consensus       570 RdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  570 RDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888888887 66665432  2222333344577777777777643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.40  E-value=7.7e-08  Score=94.57  Aligned_cols=430  Identities=12%  Similarity=0.082  Sum_probs=238.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..|-.++..| ..+++...+++.+.+++. .+-...+.....-.+...|+-++|........+.. ..+.+.|..+.-.+
T Consensus         9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~   85 (700)
T KOG1156|consen    9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence            3445555555 356677777777777773 44455555555556667778888887777776644 34566777777777


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      -...++++|.+.|......+ +.|...|.-+.-.-++.|+++........+.+. .+.....|..+..++.-.|+...|.
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~  163 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMAL  163 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888888888777665 556666766666666777777777776666654 2344556777777777778888888


Q ss_pred             HHHHHHHHcC-CCCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHccCCHHHHHHH
Q 008105          278 EVLDDMAIEG-CSPDIVTYNSLV------NFSCKQGKYDDAVLVINNLLSRGMEPNSITY-NTLLHSLGSRGCWDAVDKI  349 (577)
Q Consensus       278 ~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~g~~~~a~~~  349 (577)
                      .++++..+.. -.|+...+....      ....+.|..++|.+.+..-...  ..|...+ ..-...+.+.+++++|..+
T Consensus       164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~  241 (700)
T KOG1156|consen  164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKV  241 (700)
T ss_pred             HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence            8877776643 235554444332      2344566667776666544332  1222222 2334556677788888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHhhC
Q 008105          350 LDIMNEASHSPTVFTYNILIN-GLCKYGLVDRAI-NSFNQMVSKNCQPDIVTYNT-VLGALCKEGMLNEALQLLHLLNGS  426 (577)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~  426 (577)
                      +..+...+  ||..-|...+. ++.+.-+.-+++ .+|....+.  .|-...-.. =+.......-.+....++..+.+.
T Consensus       242 y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K  317 (700)
T KOG1156|consen  242 YRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK  317 (700)
T ss_pred             HHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence            88777764  55554444433 333333333343 455544433  111111100 011111111222233444555556


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HCC----------CCCCHHHH--HHHHHHHHhcCCHHHH
Q 008105          427 SCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM--------ENG----------ISPDDITH--RTLIWGFCRADQVEEA  486 (577)
Q Consensus       427 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g----------~~p~~~~~--~~li~~~~~~g~~~~A  486 (577)
                      |+++-   +..+...|-.-...+    ++++.+        ..|          -+|....|  -.++..+-+.|+++.|
T Consensus       318 g~p~v---f~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A  390 (700)
T KOG1156|consen  318 GVPSV---FKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA  390 (700)
T ss_pred             CCCch---hhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence            54432   222222222111111    222211        111          03443333  3455666677777777


Q ss_pred             HHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          487 VDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       487 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      ..+++.....  .|+ ...|..-.+.+.+.|++++|..++++..+.. .||..+=.--++-..++++.++|.++.....+
T Consensus       391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence            7777776654  233 2344444566777777777777777776533 34444444555666677777777777766665


Q ss_pred             cCC
Q 008105          566 WKV  568 (577)
Q Consensus       566 ~~~  568 (577)
                      .|.
T Consensus       468 ~~~  470 (700)
T KOG1156|consen  468 EGF  470 (700)
T ss_pred             ccc
Confidence            543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.39  E-value=6.3e-08  Score=95.16  Aligned_cols=427  Identities=14%  Similarity=0.098  Sum_probs=278.6

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ  202 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  202 (577)
                      ..-.+...|+-++|....+...+..+. +.+.|..+.-.+....++++|++.|...+..+ +-|...|.-+.-.-++.|+
T Consensus        47 kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd  124 (700)
T KOG1156|consen   47 KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD  124 (700)
T ss_pred             ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence            334456678999999999888875443 67778888877888899999999999999876 5577788777777778888


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHHH
Q 008105          203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG-CPPYLITYTILI------EQVCKQCGIAR  275 (577)
Q Consensus       203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~  275 (577)
                      ++-....-....+.. +.....|..++.++.-.|++..|..+.++..+.. ..|+...+.-..      ....+.|..++
T Consensus       125 ~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~  203 (700)
T KOG1156|consen  125 YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK  203 (700)
T ss_pred             hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence            888877777776653 4466788889999999999999999999988764 246665554332      23456788888


Q ss_pred             HHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHccCCHHHHH-HHHHH
Q 008105          276 AIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLH-SLGSRGCWDAVD-KILDI  352 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~-~~~~~  352 (577)
                      |.+.+..-...  ..|... -..-...+.+.+++++|..++..++..  .||...|...+. ++.+..+.-++. .+|..
T Consensus       204 ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~  279 (700)
T KOG1156|consen  204 ALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI  279 (700)
T ss_pred             HHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            88877665432  122222 234556788999999999999999988  677776665544 443333333343 66666


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHhhCC-
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNE----ALQLLHLLNGSS-  427 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~-  427 (577)
                      ..+.- +.....-..=++......-.+..-+++..+.+.|+++-...   +...|-.-...+-    +..+...+...+ 
T Consensus       280 ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~  355 (700)
T KOG1156|consen  280 LSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLSGTGM  355 (700)
T ss_pred             HhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcccccC
Confidence            65542 11111111111111112223444556677777776543333   3332221111111    111122222111 


Q ss_pred             ---------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          428 ---------CSPCLITY--NTLIDGLAKKGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       428 ---------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                               -+|....|  -.++..|-+.|+++.|..+++..+++  .|+. ..|..=.+.+.++|++++|..++++..+
T Consensus       356 f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  356 FNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             CCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence                     14555544  45677888999999999999999875  5663 3566666889999999999999999988


Q ss_pred             CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC----HHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 008105          496 RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYK--PD----DTVFSTI--VKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       496 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~l--~~~~~~~g~~~~A~~~~~~~  563 (577)
                      .+. +|...-.--..-..++.+.++|.++.....+.|..  -+    .-.|-.+  ..+|.+.|++.+|.+=+...
T Consensus       434 lD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  434 LDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             ccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            653 45444334556667899999999999988876641  11    1123222  45788888888887655544

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.38  E-value=5.9e-10  Score=102.94  Aligned_cols=202  Identities=13%  Similarity=0.103  Sum_probs=141.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .....+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~  106 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG  106 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            345677888888899999999999998887764 3356677778888888888888888888888765 34556777777


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGC-EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      ..+...|++++|.+.+++...... ......+..+...+...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence            888888888888888888775421 2234455666667777777777777777776542 33455666666677777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      ++|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777777766655 233445555566666666777777666665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=6.1e-09  Score=100.50  Aligned_cols=288  Identities=10%  Similarity=0.055  Sum_probs=216.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL  333 (577)
Q Consensus       254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  333 (577)
                      ..+......-.+-+...+++.+..++++...+.. ++....+..-|..+...|+..+-..+=.++.+.- +....+|-++
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV  318 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV  318 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence            3455566666677788889999999999888764 4556666667778888888888777777777763 2356688888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML  413 (577)
Q Consensus       334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  413 (577)
                      .-.|...|+..+|++.|......+.. =...|-.+...|.-.|..++|+..+...-+. ++-....+--+.--|.+.+.+
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence            88888889999999999888765422 2346888888999999999999988877664 111222223334457788899


Q ss_pred             hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 008105          414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN--GISP----DDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~A~  487 (577)
                      +-|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+.....  .+.+    -..+++.|..+|.+.+.+++|+
T Consensus       397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999998887764 667777777777777788899999999887621  1111    2346788889999999999999


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          488 DLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD  549 (577)
Q Consensus       488 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  549 (577)
                      ..+++..... +-+..++..+.-.+...|+++.|++.|.+.+  .+.|+-.+...+++.+..
T Consensus       476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence            9999988764 3477888888888999999999999999988  678888777777765443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.36  E-value=1.1e-07  Score=92.61  Aligned_cols=412  Identities=15%  Similarity=0.145  Sum_probs=228.3

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHH-
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM--MVGGLC-  198 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~-  198 (577)
                      +=++.+.+.|++++|.+....++..+ +.+...+..-+-++++.++|++|+++.+.-..      ..+++.  +=.+|| 
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence            44677888999999999999999875 44677777778889999999999965554321      112222  245555 


Q ss_pred             -hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008105          199 -KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARA  276 (577)
Q Consensus       199 -~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  276 (577)
                       +.+..++|+..++-..    +.|..+...-...+.+.+++++|+.+|+.+.+.+.+. +...-..++.+-    ....+
T Consensus        90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~  161 (652)
T KOG2376|consen   90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV  161 (652)
T ss_pred             HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH
Confidence             6889999999888332    2344466667778889999999999999987654321 111111111110    00000


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHHhhCC-------CCC------CHH-HHHHHHHHHHc
Q 008105          277 IEVLDDMAIEGCSPDIVTYNSL---VNFSCKQGKYDDAVLVINNLLSRG-------MEP------NSI-TYNTLLHSLGS  339 (577)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g-------~~p------~~~-~~~~ll~~~~~  339 (577)
                      . +.+...   ..| ..+|..+   ...+...|++.+|+++++...+.+       -.-      ... .-..+.-++..
T Consensus       162 ~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~  236 (652)
T KOG2376|consen  162 Q-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL  236 (652)
T ss_pred             H-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            0 111111   111 1222222   233445566666666665552110       000      000 11122333445


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHH----HHHH-----------------------------------------------
Q 008105          340 RGCWDAVDKILDIMNEASHSPTVFT----YNIL-----------------------------------------------  368 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l-----------------------------------------------  368 (577)
                      .|+-++|..++....+.... |...    -|.+                                               
T Consensus       237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l  315 (652)
T KOG2376|consen  237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL  315 (652)
T ss_pred             hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666665554322 1111    1111                                               


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC--KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG  446 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  446 (577)
                      +..|.  +..+.+.++-.....  ..|.. .+..++..+.  +.....++..++....+........+.-.++......|
T Consensus       316 L~l~t--nk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g  390 (652)
T KOG2376|consen  316 LALFT--NKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG  390 (652)
T ss_pred             HHHHh--hhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence            11111  112222222222111  12222 2333333322  22246667777776666543333556667777788899


Q ss_pred             CHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCccHHH----HHHHHHHH
Q 008105          447 CMEKAMVLYG--------QMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK--RGNKMRNSA----YRLVIHGL  512 (577)
Q Consensus       447 ~~~~A~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~----~~~li~~~  512 (577)
                      +++.|.+++.        .+.+.+..|  .+...+...+.+.++.+.|..++.+...  ..-.+....    +..+...-
T Consensus       391 n~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~  468 (652)
T KOG2376|consen  391 NPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFK  468 (652)
T ss_pred             CHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHH
Confidence            9999999988        555544444  4455666677777777777777776654  111222222    33333344


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          513 CKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (577)
                      .+.|+-++|..+++++.+.. ++|..+...++.+|++.. .+.|+.+-+.+
T Consensus       469 lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~k~L  517 (652)
T KOG2376|consen  469 LRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAESLSKKL  517 (652)
T ss_pred             HhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence            56799999999999998743 678888888888887764 66776655443

>PRK12370 invasion protein regulator; Provisional

Probab=99.35  E-value=7.9e-10  Score=115.06  Aligned_cols=182  Identities=10%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                      +++|...+++..+.. +.+...+..+...+...|++++|...|++.++.+ |.+...+..+...+...|++++|...+++
T Consensus       320 ~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        320 MIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            555666665555543 3345555555555555566666666666655543 33444555555555566666666666666


Q ss_pred             HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105          283 MAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV  362 (577)
Q Consensus       283 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  362 (577)
                      ..+.... +...+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...+..+.... +.+.
T Consensus       398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~  475 (553)
T PRK12370        398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGL  475 (553)
T ss_pred             HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhH
Confidence            5554211 1112222333344455666666666555543211123334444555555666666666665554331 1222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVS  390 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  390 (577)
                      ...+.+...|.+.|  +.|...++.+.+
T Consensus       476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        476 IAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            33344444445444  355554544443

>PRK12370 invasion protein regulator; Provisional

Probab=99.34  E-value=2.6e-09  Score=111.22  Aligned_cols=268  Identities=10%  Similarity=0.006  Sum_probs=184.9

Q ss_pred             CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---------hCCChHHHHHHHHHHHH
Q 008105          185 PDTITYNMMVGGLCK-----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF---------DNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       185 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~  250 (577)
                      .+...|...+.+...     .+.+++|.+.|++..+.. +.+...|..+..++.         ..+++++|...+++.++
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            444545444444221     234578888888887663 334555655555443         23458899999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105          251 KGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY  330 (577)
Q Consensus       251 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  330 (577)
                      .. |.+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+
T Consensus       333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            74 5678888888888999999999999999999874 335677888899999999999999999999987433 22233


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE  410 (577)
Q Consensus       331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  410 (577)
                      ..++..+...|++++|...+++..+...+.++..+..+..++...|+.++|...+.++.... +.+....+.+...|...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence            34444566688999999999998766433355667778888999999999999999876652 33344455566667777


Q ss_pred             CChhHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008105          411 GMLNEALQLLHLLNGSS-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENG  462 (577)
Q Consensus       411 g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  462 (577)
                      |  ++|...++.+.+.. ..+....+  +-..|.-.|+-+.+..+ +++.+.|
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            7  47777666655432 12222222  34445566776666666 8887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.32  E-value=4e-07  Score=89.46  Aligned_cols=407  Identities=10%  Similarity=0.050  Sum_probs=275.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          153 HFCINLIRGLIRIDRIEKASKVLQIMVMS-GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ..|...+..+.++|++...+..|+..+.. .+......|...+......|-++.+..++++..+    .++..-+-.|..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH
Confidence            46888888899999999999999988765 2333456788889888889999999999999985    455557788899


Q ss_pred             HHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCH--hhHHHHHH
Q 008105          232 MFDNGKFKQAIGFWKDQLRK------GCPPYLITYTILIEQVCKQCGIA---RAIEVLDDMAIEGCSPDI--VTYNSLVN  300 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~li~  300 (577)
                      +++.+++++|.+.+...+..      ..+.+...|.-+.+...+.-+.-   ...++++.+..+  -+|.  ..|.+|..
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD  256 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence            99999999999999887643      23455666777776666554433   233445555443  3443  67999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC----------------------CHHHHHHHHHHHHhCC-
Q 008105          301 FSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG----------------------CWDAVDKILDIMNEAS-  357 (577)
Q Consensus       301 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------------~~~~a~~~~~~~~~~~-  357 (577)
                      .|.+.|.+++|..++++....  ..+..-|..+.++|+.-.                      +++-...-|+.+.... 
T Consensus       257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~  334 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP  334 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence            999999999999999998876  334444555555443221                      1122223333333221 


Q ss_pred             ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105          358 ----------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD------IVTYNTVLGALCKEGMLNEALQLLH  421 (577)
Q Consensus       358 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~  421 (577)
                                -+.++..|..-+..  ..|+..+-...|.+..+. +.|.      ...|..+...|-..|+++.|..+|+
T Consensus       335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife  411 (835)
T KOG2047|consen  335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE  411 (835)
T ss_pred             hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence                      12234444433332  246677778888887764 2222      3457888899999999999999999


Q ss_pred             HHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHHHHHhcC
Q 008105          422 LLNGSSCSPC---LITYNTLIDGLAKKGCMEKAMVLYGQMMENG-----------ISP------DDITHRTLIWGFCRAD  481 (577)
Q Consensus       422 ~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g  481 (577)
                      +..+...+--   ..+|..-...-.++.+++.|+++.++.....           .++      +...|...++.--..|
T Consensus       412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g  491 (835)
T KOG2047|consen  412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG  491 (835)
T ss_pred             HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9887653322   3455555666667888999999888775321           111      1233555556556678


Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-c--CCHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVAD-D--GMTEEAY  557 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~-~--g~~~~A~  557 (577)
                      -++....+++++.+..+. ++.........+-.+.-++++.+++++-+..=..|+ ..+|+..+..+.+ -  -+.+.|+
T Consensus       492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR  570 (835)
T KOG2047|consen  492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR  570 (835)
T ss_pred             cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            899999999999886654 333333334445667788999999998776433455 4677776655433 2  3689999


Q ss_pred             HHHHHHHHcCCCCCc
Q 008105          558 KLWQKLIEWKVFEKG  572 (577)
Q Consensus       558 ~~~~~~~~~~~~~~~  572 (577)
                      .+|++.++ |..|..
T Consensus       571 dLFEqaL~-~Cpp~~  584 (835)
T KOG2047|consen  571 DLFEQALD-GCPPEH  584 (835)
T ss_pred             HHHHHHHh-cCCHHH
Confidence            99999999 444543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=1.3e-07  Score=94.89  Aligned_cols=412  Identities=12%  Similarity=0.020  Sum_probs=239.7

Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHH
Q 008105          148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEP-DVITYN  226 (577)
Q Consensus       148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~  226 (577)
                      +.-+...|..+.-++...|+++.+.+.|++....- --....|+.+...|...|.-..|..++++-....-.| |...+-
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            34466667777777777777777777777765432 2245567777777777777777777776654332123 333333


Q ss_pred             HHHHHHHh-CCChHHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcCCCC
Q 008105          227 TILRTMFD-NGKFKQAIGFWKDQLRK--G--CPPYLITYTILIEQVCK-----------QCGIARAIEVLDDMAIEGCSP  290 (577)
Q Consensus       227 ~li~~~~~-~~~~~~A~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~~~~~~~~~  290 (577)
                      ..-..|.+ .+.+++++.+-.+.+..  +  -......|..+.-+|..           .....++++.+++..+.+. .
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence            33333333 46666666666655541  1  11222333333333321           1124456677777766542 2


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILIN  370 (577)
Q Consensus       291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  370 (577)
                      |+.+...+.--|+..++.+.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+.
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~  555 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH  555 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence            3333333444566677777777777777776556667777777777777777777777776654321 011111111111


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC----------------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105          371 GLCKYGLVDRAINSFNQMVSK----------------------------NCQPDIVTYNTVLGALCKEGMLNEALQLLHL  422 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  422 (577)
                      .-...++.++|+.....+...                            .....+.++..+..-...  +...+..-. .
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~-~  632 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL-K  632 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc-c
Confidence            112234444444333322210                            001111222222211110  111000000 0


Q ss_pred             HhhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          423 LNGSSCSP--C------LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       423 ~~~~~~~p--~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      +......|  +      ...|......+.+.+..++|...+.+..... +-....|......+...|..++|.+.|....
T Consensus       633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence            22111122  2      2245566777888899999988888876642 3345667777777888899999999999888


Q ss_pred             hCCCCccHHHHHHHHHHHHhcCChHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          495 KRGNKMRNSAYRLVIHGLCKSKKVDMAIQ--VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       495 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      ..+.. ++.....+..++.+.|+..-|..  ++..+.+.+ +.+...|..+...+.+.|+.++|.+.|....+...
T Consensus       712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            75422 45678889999999998888888  999998755 45789999999999999999999999999887543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=7.9e-10  Score=99.20  Aligned_cols=235  Identities=12%  Similarity=0.022  Sum_probs=191.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          330 YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK  409 (577)
Q Consensus       330 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  409 (577)
                      -+.+.++|.+.|.+.+|++.++...+..  |-+.||-.|-..|.+..++..|+.++.+-++. .+-|+.....+...+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            3567889999999999999998887764  67778888999999999999999999988876 23444444556677778


Q ss_pred             cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      .++.++|.++++...+.. +.++.....+...|.-.++++.|+.+++++.+.|+ -+...|+.+.-+|.-.++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            899999999999888875 56677777778888889999999999999999886 4778888888888899999999999


Q ss_pred             HHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          490 LKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       490 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      |++....--.|+  ...|..+.......|++..|.+.|+-.+.++ ....+.++.|.-.-.+.|+.++|+.+++......
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            988876433333  4567778888888999999999999888653 3457888888888899999999999999988866


Q ss_pred             CCC
Q 008105          568 VFE  570 (577)
Q Consensus       568 ~~~  570 (577)
                      |..
T Consensus       460 P~m  462 (478)
T KOG1129|consen  460 PDM  462 (478)
T ss_pred             ccc
Confidence            543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.28  E-value=4.6e-09  Score=104.35  Aligned_cols=237  Identities=17%  Similarity=0.125  Sum_probs=160.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-C-C
Q 008105          329 TYNTLLHSLGSRGCWDAVDKILDIMNEA-----SH-SPTVF-TYNILINGLCKYGLVDRAINSFNQMVSK-----N-C-Q  394 (577)
Q Consensus       329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~-~  394 (577)
                      +...+...|...|+++.|..+++...+.     |. .|.+. ..+.+...|...+++++|..+|+++...     | . +
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4455666666667777666666655443     11 12222 2234666777888888888888887653     2 1 1


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 008105          395 PDIVTYNTVLGALCKEGMLNEALQLLHLLNGS-----S-CSPCL-ITYNTLIDGLAKKGCMEKAMVLYGQMMEN---GIS  464 (577)
Q Consensus       395 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~  464 (577)
                      .-..+++.|..+|.+.|++++|...++...+.     + ..|.+ ..++.+...|...+++++|..+++...+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            12345666677788888888877776654321     1 12222 23566777788889999999988877541   122


Q ss_pred             CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC--Cc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH---
Q 008105          465 PD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GN--KM-RNSAYRLVIHGLCKSKKVDMAIQVLELMIS---  530 (577)
Q Consensus       465 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---  530 (577)
                      ++    ..+++.|...|...|++++|.++++++...    +.  .+ ....++.+...|.+.+++.+|.++|.+...   
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            23    357889999999999999999999987652    11  11 234567788899999999999999987653   


Q ss_pred             -CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          531 -SR-YKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       531 -~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                       .| ..|+ ..+|..|...|.+.|++++|+++.+.+..
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence             12 1233 46788999999999999999999888863

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.25  E-value=4.4e-08  Score=98.66  Aligned_cols=128  Identities=14%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105          366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK  445 (577)
Q Consensus       366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  445 (577)
                      ..+...|...|++++|++.+++.++.. +..+..|..-...+-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence            444555666677777777777666652 2235556666666666777777777776666655 44556666666666677


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          446 GCMEKAMVLYGQMMENGISPDDI------TH--RTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      |++++|.+++....+.+..|-..      .|  .....+|.+.|++..|++.|..+.+
T Consensus       276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777777666665544322211      11  3344556667777766666655543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=1.8e-11  Score=81.68  Aligned_cols=50  Identities=34%  Similarity=0.503  Sum_probs=33.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR  164 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~  164 (577)
                      ||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56666666666666666666666666666666666666666666666653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=1.4e-09  Score=97.68  Aligned_cols=230  Identities=8%  Similarity=-0.051  Sum_probs=193.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105          295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK  374 (577)
Q Consensus       295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  374 (577)
                      -+.+..+|.+.|.+.+|.+.++..++.  .|-..||..|-++|.+..+.+.|..++.+-.+.- +-++....-+...+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence            356788999999999999999998887  6667788889999999999999999999888752 3454444566777888


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL  454 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  454 (577)
                      .++.++|.++|+...+.. +.++.....+...|.-.++.+.|++.++.+.+.| ..+...|+.+.-+|.-.++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence            899999999999999875 6677788888888888999999999999999998 44678899998889999999999999


Q ss_pred             HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          455 YGQMMENGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       455 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      |++....--.|+  ...|-.+.......|++.-|.+.|+-....+.. +...++.+.-.-.+.|++++|..++....+
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            999886543344  456878888888899999999999988876533 678899998888999999999999998874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.24  E-value=2.6e-08  Score=100.27  Aligned_cols=292  Identities=16%  Similarity=0.191  Sum_probs=207.0

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR---  200 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---  200 (577)
                      ...+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ +.+...|..+..+..-.   
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence            45668899999999999876554 33344555667788999999999999999999987 34555566666665322   


Q ss_pred             --CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105          201 --GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       201 --g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                        .+.+...++++++...  -|.......+.-.+.....+. .+..++..++.+|+|+   +|+.|-..|......+-..
T Consensus        89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence              2567778889888765  354444443433333323333 4556667778888664   5555555565555555555


Q ss_pred             HHHHHHHHc----C----------CCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHcc
Q 008105          278 EVLDDMAIE----G----------CSPDIV--TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSR  340 (577)
Q Consensus       278 ~~~~~~~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~  340 (577)
                      +++......    +          -+|+..  ++..+...|-..|++++|++++++.+++  .|+ ...|..-.+.+-+.
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence            555554432    1          134443  4456678888999999999999999988  565 45788888999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCC
Q 008105          341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV--------TYNTVLGALCKEGM  412 (577)
Q Consensus       341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------~~~~li~~~~~~g~  412 (577)
                      |++.+|.+.++...+.+. -|...-+.....+.+.|+.++|.+++....+.+..|-..        -......+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999988764 477777778888999999999999999888776433221        12445678899999


Q ss_pred             hhHHHHHHHHHhh
Q 008105          413 LNEALQLLHLLNG  425 (577)
Q Consensus       413 ~~~A~~~~~~~~~  425 (577)
                      +..|++.|..+.+
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887766544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.24  E-value=2.8e-11  Score=80.73  Aligned_cols=49  Identities=47%  Similarity=0.812  Sum_probs=28.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC  478 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  478 (577)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.22  E-value=9.4e-09  Score=102.15  Aligned_cols=244  Identities=19%  Similarity=0.136  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-
Q 008105          222 VITYNTILRTMFDNGKFKQAIGFWKDQLRK-----G-CPPYLIT-YTILIEQVCKQCGIARAIEVLDDMAIE-----GC-  288 (577)
Q Consensus       222 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-  288 (577)
                      ..+...+...|...|+++.|+.+++..++.     | ..|...+ .+.+...|...+++.+|..+|+++...     |- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            344555667777777777777777766553     1 1122222 222445555666666666666655431     10 


Q ss_pred             CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 008105          289 SP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV-FTYN  366 (577)
Q Consensus       289 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~  366 (577)
                      .| -..+++.|..+|.+.|++++|...++...+.                            ++..... ..|.+ ..++
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~-~~~~v~~~l~  329 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGA-SHPEVAAQLS  329 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhcc-ChHHHHHHHH
Confidence            11 1234455555566666665555555443321                            0000000 00111 1223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-------CCCCH
Q 008105          367 ILINGLCKYGLVDRAINSFNQMVSK---NCQP----DIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-------CSPCL  432 (577)
Q Consensus       367 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~  432 (577)
                      .+...+...+++++|..+++...+.   -+.+    -..+++.+...|.+.|++++|.++++.+....       ..-..
T Consensus       330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~  409 (508)
T KOG1840|consen  330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG  409 (508)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence            3333444444444444444433321   0011    12345555555555555555555555443210       11123


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMME----NGI-SPD-DITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      ..++.+...|.+.+++.+|.++|.+...    .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus       410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3455555666666666666666655432    221 122 3456666666666677766666666554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=4.4e-07  Score=82.81  Aligned_cols=382  Identities=12%  Similarity=0.126  Sum_probs=241.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105          159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF  238 (577)
Q Consensus       159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  238 (577)
                      +.-+....++..|+.+++.-...+-.....+-.-+...+...|++++|...+.-+.+.. .++...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            34455677888899988877654422221222223456778999999999999887755 67788888888888888999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL  318 (577)
Q Consensus       239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  318 (577)
                      .+|..+-.+.     +.++.....|+....+.++-++...+-+.+...     ..---+|.+.....-.+.+|++++...
T Consensus       108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            9998775542     445555566666677788877777766666432     122334555555556789999999999


Q ss_pred             hhCCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHH--H----------
Q 008105          319 LSRGMEPNSITYNTLL-HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY--GLVDRAI--N----------  383 (577)
Q Consensus       319 ~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~--~----------  383 (577)
                      +..  .|+-...|.-+ -+|.+..-++-+.++++-..+. ++.++...|.......+.  |+..++.  +          
T Consensus       178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~  254 (557)
T KOG3785|consen  178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP  254 (557)
T ss_pred             Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence            876  45555555544 3567888888898888877765 334445555444433332  2221111  0          


Q ss_pred             HHHHHHHCC------------CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105          384 SFNQMVSKN------------CQP-----DIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG  446 (577)
Q Consensus       384 ~~~~m~~~~------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  446 (577)
                      ..+.+.+++            +-|     =+.+-..++-.|.+.++..+|..+.+++...  .|.......+..  +..|
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~--aalG  330 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVF--AALG  330 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHH--HHhh
Confidence            111111111            011     1223334555678889999999888777532  333333333322  2222


Q ss_pred             -------CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh
Q 008105          447 -------CMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV  518 (577)
Q Consensus       447 -------~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  518 (577)
                             .+.-|...|+-.-+.+..-|.. --.++...+.-..++++.+.+++.+...-...|...|+ +..+.+..|++
T Consensus       331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny  409 (557)
T KOG3785|consen  331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNY  409 (557)
T ss_pred             hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcCh
Confidence                   3555666666665555444432 23345555566668999999999888754444444444 78899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 008105          519 DMAIQVLELMISSRYKPDDTVFS-TIVKKVADDGMTEEAYKLW  560 (577)
Q Consensus       519 ~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~  560 (577)
                      .+|+++|-+.....++ |..+|. .|.++|.+.++.+-|..++
T Consensus       410 ~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  410 VEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM  451 (557)
T ss_pred             HHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence            9999999887643333 555665 5677899999999887664

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.1e-06  Score=81.95  Aligned_cols=266  Identities=8%  Similarity=-0.037  Sum_probs=106.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT  332 (577)
Q Consensus       254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  332 (577)
                      +-|......+.+.+...|+.++|...|+.....  .|+. .........+.+.|+.++...+...+.... +-....|-.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            334444455555555555555555555554433  1211 111111222334444444444444443321 011111211


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM  412 (577)
Q Consensus       333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  412 (577)
                      -....-..+++..|..+-+..++.+ +.+...+-.-...+.+.+++++|.-.|+...... +-+...|..|+..|...|.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence            1222223344444444444444332 1223333333344444455555555554444331 2344445555555555555


Q ss_pred             hhHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 008105          413 LNEALQLLHLLNGSSCSPCLITYNTLI-DGLAK-KGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      +.+|...-+...+. ++.+..+.+.+. ..+.- ..--++|.++++.-.+.  .|+. ...+.+...+...|..+++..+
T Consensus       384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence            55544443332221 122233333331 11111 11123444444444331  2332 2333344444444555555555


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      +++....  .||....+.+.+.+...+.+++|.+.|...+
T Consensus       461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5444332  3444444444444444445555555444444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=6.2e-06  Score=80.69  Aligned_cols=393  Identities=15%  Similarity=0.085  Sum_probs=228.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +.+=++.+.+.|++++|.+....++..+ +-|...+..=+-++.+.+++++|+.+.+.-...  ..+..-+---.-+..+
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence            3444566778899999999999999877 556667777777888999999999666543311  1111111112234456


Q ss_pred             CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      .+..++|+..++-     ..+ +..+...-...+.+.|++++|+++|+.+.+.+.+ +   +...+.+-+..-  ..+..
T Consensus        92 lnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~--~a~l~  160 (652)
T KOG2376|consen   92 LNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAV--AAALQ  160 (652)
T ss_pred             cccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHH--HHhhh
Confidence            8999999998872     232 3335556667788999999999999999877532 2   222222111100  01111


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHhC-------CCCCCHH-------HHHHHHHHHHHcC
Q 008105          314 VINNLLSRGMEPNSITYNTLLH---SLGSRGCWDAVDKILDIMNEA-------SHSPTVF-------TYNILINGLCKYG  376 (577)
Q Consensus       314 ~~~~m~~~g~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~li~~~~~~g  376 (577)
                      . ..+......| ..+|..+.+   .+...|++.+|+++++...+.       +-..+..       .--.|.-.+-..|
T Consensus       161 ~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G  238 (652)
T KOG2376|consen  161 V-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG  238 (652)
T ss_pred             H-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            1 1122222233 334444333   456789999999999887221       1111111       1122344566789


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhc------------------------------------------
Q 008105          377 LVDRAINSFNQMVSKNCQPDIVTY----NTVLGALCKE------------------------------------------  410 (577)
Q Consensus       377 ~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~------------------------------------------  410 (577)
                      +.++|..++...++.. ++|....    |.++..-...                                          
T Consensus       239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~  317 (652)
T KOG2376|consen  239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA  317 (652)
T ss_pred             chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875 3443211    1111110000                                          


Q ss_pred             ---CChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105          411 ---GMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA--KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE  485 (577)
Q Consensus       411 ---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  485 (577)
                         +..+.+.++....  .+..|. ..+..++..+.  +...+.++.+++...-+..-.-.......++......|+++.
T Consensus       318 l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~  394 (652)
T KOG2376|consen  318 LFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV  394 (652)
T ss_pred             HHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence               0000011000000  011222 23334443332  222467777777777664322224455666777888999999


Q ss_pred             HHHHHH--------HHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhcC
Q 008105          486 AVDLLK--------EIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS--RYKPDDT----VFSTIVKKVADDG  551 (577)
Q Consensus       486 A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~l~~~~~~~g  551 (577)
                      |.+++.        .+.+.+..|-  +...+...+.+.++-+.|..++.+.+..  .-.+...    ++.-++..-.+.|
T Consensus       395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            999999        5555544444  4556777788888888788888777641  1122222    3333444456779


Q ss_pred             CHHHHHHHHHHHHHcCCC
Q 008105          552 MTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       552 ~~~~A~~~~~~~~~~~~~  569 (577)
                      +-++|..+++++.+.++.
T Consensus       473 ~~~ea~s~leel~k~n~~  490 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFNPN  490 (652)
T ss_pred             chHHHHHHHHHHHHhCCc
Confidence            999999999999996654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=6.4e-06  Score=77.01  Aligned_cols=291  Identities=12%  Similarity=0.044  Sum_probs=189.5

Q ss_pred             cCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCCHHHHH
Q 008105          270 QCGIARAIEVLDDMAIE-GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSIT-YNTLLHSLGSRGCWDAVD  347 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~  347 (577)
                      .++...|...+-.+... -++-++.....+...+...|+.++|...|++....  .|+..+ .....-.+...|+.+...
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~  286 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS  286 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence            34444444444333332 24456677778888888888888888888887755  333332 111222345677777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 008105          348 KILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS  427 (577)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  427 (577)
                      .+...+..... -....|-.-........++..|+.+-++.++.+ +.+...+-.-...+...++.++|.-.|+......
T Consensus       287 ~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  287 ALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            77776654321 122333333444455677888888888777664 4455555555566777888888888888776653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHhhCCCCcc-HHH
Q 008105          428 CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLI-WGFC-RADQVEEAVDLLKEIGKRGNKMR-NSA  504 (577)
Q Consensus       428 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~~-~~~  504 (577)
                       +-+..+|..|+..|...|.+.+|..+-....+. ++.+..+...+. ..+. ...--++|.+++++..+.  .|+ ...
T Consensus       365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A  440 (564)
T KOG1174|consen  365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA  440 (564)
T ss_pred             -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence             456778888888888888888887776665543 234555555442 2332 222346788888776653  333 345


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008105          505 YRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFE  570 (577)
Q Consensus       505 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (577)
                      .+.+...|...|+.++++.++++.+.  ..||....+.|.+.+...+.+++|.+.|...+..+|..
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~  504 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS  504 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence            56677778888888888888888773  47888888888888888888888888888877766553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=9.6e-08  Score=91.05  Aligned_cols=118  Identities=8%  Similarity=-0.053  Sum_probs=55.4

Q ss_pred             CChhhHHHHHHHHHHcCC-CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008105          131 GKLTDASKLIDIMARRNQ-IP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAI  207 (577)
Q Consensus       131 g~~~~A~~l~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  207 (577)
                      +..+.++.-+.+++.... .|  ....|..+...+.+.|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            445555555555554321 11  12334444444555555555555555555443 223445555555555555555555


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          208 ALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       208 ~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      +.|++..+.. +.+..+|..+..++...|++++|++.|++..+
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~  160 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5555554432 22334444444444445555555555554444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.11  E-value=1e-07  Score=90.89  Aligned_cols=226  Identities=12%  Similarity=0.006  Sum_probs=146.4

Q ss_pred             CCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105          166 DRIEKASKVLQIMVMSGG-VP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI  242 (577)
Q Consensus       166 g~~~~A~~~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~  242 (577)
                      ++.+.++.-+.+++.... .|  ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            355666667767765321 11  24557777778888888888888888888764 456788888888888888888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          243 GFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG  322 (577)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  322 (577)
                      +.|++.++.. |-+..++..+...+...|++++|.+.|+...+..  |+..............++.++|...+++.....
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            8888888653 4456777778888888888888888888888763  433222222223445677888888886655332


Q ss_pred             CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 008105          323 MEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEA---SH---SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD  396 (577)
Q Consensus       323 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~  396 (577)
                       .|+...+ .+.  ....|+...+ ..++.+.+.   ..   +.....|..+...+.+.|++++|+..|++..+.+ +||
T Consensus       196 -~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~  269 (296)
T PRK11189        196 -DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN  269 (296)
T ss_pred             -CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence             2232221 222  2234554443 244444321   11   1233578888888888888888888888888775 334


Q ss_pred             HHHHH
Q 008105          397 IVTYN  401 (577)
Q Consensus       397 ~~~~~  401 (577)
                      ..-+.
T Consensus       270 ~~e~~  274 (296)
T PRK11189        270 FVEHR  274 (296)
T ss_pred             HHHHH
Confidence            44333

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.11  E-value=1.4e-07  Score=81.29  Aligned_cols=194  Identities=14%  Similarity=0.019  Sum_probs=95.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      |.-.|.+.|++..|..-+++.++.. +.+..+|..+...|-+.|+.+.|.+.|++..... +.+..+.|.....+|.+|+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence            3344445555555555555555443 2233445555555555555555555555554442 3344445555555555555


Q ss_pred             hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 008105          238 FKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVIN  316 (577)
Q Consensus       238 ~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  316 (577)
                      +++|...|++....- ...-..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++..|...++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            555555555544431 11123344444444555555555555555555442 1122344445555555555555555555


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105          317 NLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE  355 (577)
Q Consensus       317 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  355 (577)
                      .....+. ++..+.-..|+.-...|+.+.+.+.=.++..
T Consensus       198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5554443 4555555555555555555555554444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.09  E-value=8.1e-07  Score=79.25  Aligned_cols=291  Identities=13%  Similarity=0.092  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM-MVGGL  197 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~  197 (577)
                      -+++++..+.+..++++|++++..-.++.++ +....+.+..+|....++..|-..++++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            3677888889999999999999988887532 7778888999999999999999999999765  445444432 24556


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILR--TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      -+.+.+.+|+.+...|...   ++...-..-+.  .....+++..+..+.++....|   +..+.+.......+.|+++.
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            6889999999999888642   22222222222  2345788888888888765443   44555555556678999999


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------------CCHH--------HHHHHH
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME-------------PNSI--------TYNTLL  334 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~--------~~~~ll  334 (577)
                      |.+-|+...+-+--.....||..+. ..+.|+++.|++...++.++|++             ||..        .-+.++
T Consensus       163 AvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~  241 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV  241 (459)
T ss_pred             HHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence            9999999887543334567776554 45778899999999999888754             1211        111222


Q ss_pred             -------HHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          335 -------HSLGSRGCWDAVDKILDIMNEA-SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA  406 (577)
Q Consensus       335 -------~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  406 (577)
                             ..+.+.++++.|.+.+.+|.-+ ....|++|...+.-. --.+++.+..+-+.-+...+ +-...||..++-.
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll  319 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLL  319 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence                   2234455566665555555422 122344444332211 11233333344444444433 2334555555556


Q ss_pred             HHhcCChhHHHHHHH
Q 008105          407 LCKEGMLNEALQLLH  421 (577)
Q Consensus       407 ~~~~g~~~~A~~~~~  421 (577)
                      ||++.-++-|-.++-
T Consensus       320 yCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  320 YCKNEYFDLAADVLA  334 (459)
T ss_pred             HhhhHHHhHHHHHHh
Confidence            666655555555543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.08  E-value=1.9e-07  Score=80.50  Aligned_cols=198  Identities=14%  Similarity=-0.015  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          365 YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK  444 (577)
Q Consensus       365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~  444 (577)
                      ...|.-.|.+.|+...|..-+++.++.+ +.+..+|..+...|-+.|+.+.|.+.|+...+.. +.+..+.|....-+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            4455666777777777777777777764 5566677777777777777777777777777664 4456667777777777


Q ss_pred             cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 008105          445 KGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQ  523 (577)
Q Consensus       445 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  523 (577)
                      .|++++|...|++....-.- --..+|..+..+..+.|+.+.|.+.|++..+.+.. .......+.......|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence            77888888887777764211 12456777777777778888888888777765432 34455667777777788888887


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       524 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      +++.....+ .++.......++.-.+.|+.+.+-++=..+...
T Consensus       195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            777776644 377777777777777778777777766666553

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.08  E-value=1.3e-06  Score=86.36  Aligned_cols=200  Identities=12%  Similarity=0.053  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQI-PDF-HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      ...|..+...+...|+.+++.+.+.+..+.... ++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence            456677777788888888887777776654321 121 122222344567899999999999988764 334444442 2


Q ss_pred             HHHH----hcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105          195 GGLC----KRGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK  269 (577)
Q Consensus       195 ~~~~----~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (577)
                      ..+.    ..+..+.+.+.++...  ...|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            2222    2455555555555421  11233 3444556677888899999999999988764 5566777888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          270 QCGIARAIEVLDDMAIEGC-SPDI--VTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      .|++++|...+++...... .|+.  ..|..+...+...|++++|..++++....
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            9999999998888776432 1222  34556777888889999999888887544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=5.6e-07  Score=80.23  Aligned_cols=392  Identities=14%  Similarity=0.091  Sum_probs=248.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT-ILRTM  232 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~  232 (577)
                      -+.+.+..+++..++..|++++..-.+.. +.+....+.|..+|-...++..|-+.++++...  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            46777888899999999999999888775 347778888999999999999999999999865  566655543 34567


Q ss_pred             HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105          233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE--QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD  310 (577)
Q Consensus       233 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  310 (577)
                      .+.+.+..|+.+...|...   ++...-..-+.  .....+++..+..+.++....|   +..+.+...-...+.|+++.
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            7889999999999887643   22222222222  2335688888888888877543   45556666666779999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-------------CH---------------
Q 008105          311 AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP-------------TV---------------  362 (577)
Q Consensus       311 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~---------------  362 (577)
                      |.+-|+...+-+---....|+..+.. .+.++.+.|.+...++.++|++.             |+               
T Consensus       163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~  241 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV  241 (459)
T ss_pred             HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence            99999998876433356677776644 46789999999999998876531             11               


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVSK-NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG  441 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~  441 (577)
                      ..+|.-...+.+.++.+.|.+.+-+|.-+ ....|++|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.
T Consensus       242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLll  319 (459)
T KOG4340|consen  242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLL  319 (459)
T ss_pred             HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHH
Confidence            11233334456788999999888888643 2345777766554322 23456666666666666543 346788899999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH-HhcCCh
Q 008105          442 LAKKGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFC-RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGL-CKSKKV  518 (577)
Q Consensus       442 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~  518 (577)
                      ||+..-++.|-+++.+-...-.. .+...|+ |++++. ..-..++|.+-+..+...-   ....-...+..- .+..+-
T Consensus       320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~d  395 (459)
T KOG4340|consen  320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRD  395 (459)
T ss_pred             HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Confidence            99999999998887653321110 1233333 334433 2345666666555443210   000000111110 112221


Q ss_pred             HH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          519 DM----AIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       519 ~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      +.    |++-+++.++    .-..+..+-.+.+.+..++..+++.|..-.+
T Consensus       396 d~a~R~ai~~Yd~~LE----~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  396 DEAIRKAVNEYDETLE----KYLPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            11    2222222221    1112233444567788888899998887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.07  E-value=1.7e-06  Score=85.53  Aligned_cols=202  Identities=17%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HHHHHHHH
Q 008105          364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPCL--ITYNTLID  440 (577)
Q Consensus       364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~li~  440 (577)
                      ....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++....... .|+.  ..|..+..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            33344455666677777777777666653 34455566666666667777777776666554321 1221  23445566


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-hhCCC-CccHHHHHHHHHHH
Q 008105          441 GLAKKGCMEKAMVLYGQMMENGI-SPDDITH-R--TLIWGFCRADQVEEAVDL--LKEI-GKRGN-KMRNSAYRLVIHGL  512 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m-~~~~~-~~~~~~~~~li~~~  512 (577)
                      .+...|++++|..++++...... .+..... +  .++.-+...|..+.+.+.  +... ..... ............++
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~  274 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL  274 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            66677777777777777643221 1111111 1  222223333432222222  1111 11100 11111222456667


Q ss_pred             HhcCChHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          513 CKSKKVDMAIQVLELMISSRYK------P--DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~~~------p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      ...|+.++|..+++.+......      .  ..........++...|+.++|.+.+...+..
T Consensus       275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            7888888888888887652211      0  1122222334567888888888888877654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.01  E-value=5e-06  Score=83.83  Aligned_cols=409  Identities=12%  Similarity=0.035  Sum_probs=274.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      +..|...|..|.-++..+|+++.+.+.|++....- .-....|..+...|...|.-..|..++++-......|+..+--.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            45789999999999999999999999999988753 34777899999999999999999999998876543354333333


Q ss_pred             HH-HHHH-hcCChHHHHHHHHHHhhC--CC--CCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHHHHCCCCC
Q 008105          193 MV-GGLC-KRGQIRSAIALLDEMSVS--GC--EPDVITYNTILRTMFDN-----------GKFKQAIGFWKDQLRKGCPP  255 (577)
Q Consensus       193 li-~~~~-~~g~~~~A~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------~~~~~A~~~~~~~~~~~~~~  255 (577)
                      ++ ..|. +.|.+++++..-.+....  +.  ......|..+.-+|...           ....++++.+++..+.+. .
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence            33 3333 456777777766666541  11  23455566665555432           224578899999888652 2


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC----------
Q 008105          256 YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR-GME----------  324 (577)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~----------  324 (577)
                      |+.+.-.+.--|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |..          
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI  556 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence            333333344457888999999999999998866778899999999999999999999998877654 110          


Q ss_pred             --------CCHHHHHHHHHHHHcc------CCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          325 --------PNSITYNTLLHSLGSR------GCWDAVDKILDIMNEA--SHSPTVFTYNILINGLCKYGLVDRAINSFNQM  388 (577)
Q Consensus       325 --------p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  388 (577)
                              --..|...++..+-..      ++-....+....+.-.  .......++..+..-...  +...+..-.. +
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-L  633 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-L  633 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-c
Confidence                    0112222233222211      1111111111111100  111123344333332221  1111110011 2


Q ss_pred             HHCCCC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          389 VSKNCQ--PD------IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       389 ~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      ....+.  |+      ...|......+.+.+..++|..-+.+..... +-....|......+...|..++|.+.|.....
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            222222  22      2346667778888899999987777776653 55567777777888899999999999999887


Q ss_pred             CCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          461 NGISPD-DITHRTLIWGFCRADQVEEAVD--LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       461 ~g~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .  .|+ +....++...+.+.|+..-|..  ++.++.+.+. .+...|..+...+-+.|+.+.|.+.|....+
T Consensus       713 l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q  782 (799)
T KOG4162|consen  713 L--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQ  782 (799)
T ss_pred             c--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence            4  454 6678899999999998777777  9999998764 4788999999999999999999999998875

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.98  E-value=7.8e-06  Score=91.68  Aligned_cols=336  Identities=11%  Similarity=0.015  Sum_probs=206.8

Q ss_pred             HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCCH--hhHHHHHHHHH
Q 008105          232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC------SPDI--VTYNSLVNFSC  303 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~li~~~~  303 (577)
                      ....|+++.+...++.+.......+..........+...|++++|...+......--      .+..  .....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            444677776666665542111111222223344455678899999998887754310      1111  11222334566


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHH
Q 008105          304 KQGKYDDAVLVINNLLSRGMEPNS----ITYNTLLHSLGSRGCWDAVDKILDIMNEA----SHS-PTVFTYNILINGLCK  374 (577)
Q Consensus       304 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~  374 (577)
                      ..|++++|...+++....-...+.    ...+.+...+...|++++|...+++....    +.. ....++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            889999999999987763212221    23455566677899999999988877643    111 112344556677888


Q ss_pred             cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCC--CHHHHHHHHHHHH
Q 008105          375 YGLVDRAINSFNQMVSK----NCQ--P-DIVTYNTVLGALCKEGMLNEALQLLHLLNGSS--CSP--CLITYNTLIDGLA  443 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~li~~~~  443 (577)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998876652    211  1 22334455566777899999998888765421  112  2334455666778


Q ss_pred             hcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHh
Q 008105          444 KKGCMEKAMVLYGQMMENGI-SPDDITH-----RTLIWGFCRADQVEEAVDLLKEIGKRGNKMR---NSAYRLVIHGLCK  514 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~  514 (577)
                      ..|++++|.+.+++.....- ......+     ...+..+...|+.+.|.+++...........   ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            89999999999888754210 0111111     1122444567899999998877654221111   1113456777888


Q ss_pred             cCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          515 SKKVDMAIQVLELMISS----RYKPD-DTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       515 ~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      .|++++|...+++....    |..++ ..+...+..++.+.|+.++|...+.+.++..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999988752    33322 3456667778999999999999999888754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.96  E-value=9.9e-06  Score=90.88  Aligned_cols=335  Identities=12%  Similarity=0.020  Sum_probs=174.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC------CCCH--HHHHHHHHHHH
Q 008105          162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC------EPDV--ITYNTILRTMF  233 (577)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~~--~~~~~li~~~~  233 (577)
                      +...|+++.+..+++.+.......+..........+...|++++|..+++...+.--      .+..  .....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            344566666666655542111111222223334445567777887777776543200      0111  11122233445


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHh
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYL----ITYTILIEQVCKQCGIARAIEVLDDMAIEGC---SP--DIVTYNSLVNFSCK  304 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~  304 (577)
                      ..|++++|...+++....-...+.    ...+.+...+...|++++|...+++.....-   .+  ...++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            677888888777776653111111    2334455556677888888777776654210   11  12334455566777


Q ss_pred             cCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 008105          305 QGKYDDAVLVINNLLSR----GME--P-NSITYNTLLHSLGSRGCWDAVDKILDIMNEA----SHSPTVFTYNILINGLC  373 (577)
Q Consensus       305 ~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~  373 (577)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+++....    +.......+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            78888887777665442    211  1 1223334445556667888877777665432    11111233344555666


Q ss_pred             HcCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHh
Q 008105          374 KYGLVDRAINSFNQMVSKNC-QPDIVTY-----NTVLGALCKEGMLNEALQLLHLLNGSSCSPCL---ITYNTLIDGLAK  444 (577)
Q Consensus       374 ~~g~~~~A~~~~~~m~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~  444 (577)
                      ..|+.++|...+.+...... ......+     ...+..+...|+.+.|...+............   ..+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            77788878777776643210 0000101     11123344467777777776655432211111   113445566677


Q ss_pred             cCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          445 KGCMEKAMVLYGQMMEN----GISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       445 ~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      .|++++|...+++....    |..++ ..+...+..++.+.|+.++|.+.+.+..+.
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777777777776542    22221 234555566677778877777777777653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.94  E-value=8.1e-06  Score=74.50  Aligned_cols=198  Identities=13%  Similarity=0.072  Sum_probs=110.6

Q ss_pred             CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHH-
Q 008105          221 DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL---IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYN-  296 (577)
Q Consensus       221 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-  296 (577)
                      ++.----+...+...|++..|+.-|...++.    |+..|.++   ...|...|+...|+.-+...++.  +||-..-. 
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi  110 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence            4444455667777788888888888877653    33444443   44677788888888888877765  56643221 


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHH------------HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105          297 SLVNFSCKQGKYDDAVLVINNLLSRGMEPNS--ITY------------NTLLHSLGSRGCWDAVDKILDIMNEASHSPTV  362 (577)
Q Consensus       297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  362 (577)
                      .-...+.++|.+++|..-|+..++....-+.  ..+            ...+..+...|+...|......+.+.. +.+.
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda  189 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA  189 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence            1234577888888888888888876322111  111            112223344455555555555555542 2344


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS  426 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  426 (577)
                      ..+..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++...++..+.
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl  252 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL  252 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence            445555555555555555555544444332 233444444444555555555555555555443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4.6e-06  Score=80.79  Aligned_cols=384  Identities=14%  Similarity=0.049  Sum_probs=203.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD-TITYNMMVGGLCKRGQ  202 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~  202 (577)
                      .++.+..|+++.|+.+|-+.+...+. |...|..-..+|...|++++|++=-.+-++.  .|+ ..-|+....++.-.|+
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence            46778899999999999998887544 8888888999999999999998877666655  444 3467888888888899


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHH-HHH
Q 008105          203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAI-EVL  280 (577)
Q Consensus       203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~-~~~  280 (577)
                      +++|+..|.+-.+.. +.+...++-+..++.    .+.+.     +.   ...++..|..+..--....- .+.+. .++
T Consensus        86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l  152 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL  152 (539)
T ss_pred             HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence            999999999888764 445666676776661    11111     10   01122222222110000000 01111 111


Q ss_pred             HHHHHcCCCCCHhhH---HHHHHHHHhcCCHHHH-HHHHHHHh-hCCCCC----------------------CHHHHHHH
Q 008105          281 DDMAIEGCSPDIVTY---NSLVNFSCKQGKYDDA-VLVINNLL-SRGMEP----------------------NSITYNTL  333 (577)
Q Consensus       281 ~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~~~m~-~~g~~p----------------------~~~~~~~l  333 (577)
                      +.+. .+ +-+...|   ..++.+.......+.- ...-..+. ..+..|                      -..-...+
T Consensus       153 ~~~~-~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l  230 (539)
T KOG0548|consen  153 EIIQ-KN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL  230 (539)
T ss_pred             HHhh-cC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence            1111 10 0000000   0111111100000000 00000000 000001                      01123445


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHH
Q 008105          334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT-------VLGA  406 (577)
Q Consensus       334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------li~~  406 (577)
                      .++..+..+++.+.+.++...+..  .+..-++....+|...|.+.+....-....+.| .-...-|+.       +..+
T Consensus       231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g~a  307 (539)
T KOG0548|consen  231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLGNA  307 (539)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhhhh
Confidence            666667777888888888777654  355556666677777777777766666655554 112222222       3335


Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105          407 LCKEGMLNEALQLLHLLNGSSCSPCLITY-------------------------NTLIDGLAKKGCMEKAMVLYGQMMEN  461 (577)
Q Consensus       407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m~~~  461 (577)
                      |.+.++++.|...|.+.......|+..+-                         ..-...+.+.|++..|...|.++++.
T Consensus       308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr  387 (539)
T KOG0548|consen  308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR  387 (539)
T ss_pred             hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            55667778888877766554434332221                         11123344556666666666666655


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          462 GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       462 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      . +-|...|....-+|.+.|.+..|++-.+...+.+ ++....|..=..++....++++|.+.|++.++
T Consensus       388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 3345566666666666666666666655555542 12233343334444445566666666666654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=8.4e-06  Score=79.01  Aligned_cols=364  Identities=13%  Similarity=0.048  Sum_probs=219.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ++|-+.|..=..+|.+.|++++|++=-.+-++.. +.....|+-...++.-.|++++|+.-|.+-++.. +.+...++-+
T Consensus        33 p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl  110 (539)
T KOG0548|consen   33 PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGL  110 (539)
T ss_pred             CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhH
Confidence            4588899999999999999999998777777653 3367889999999999999999999999998875 4567777888


Q ss_pred             HHHHHhcCChHHH-HHHHHHHhhCCCCCCHHHHHHHH-----HHHHhCCChHHHHHHHHHHHHCCCCCCHHHH---HHHH
Q 008105          194 VGGLCKRGQIRSA-IALLDEMSVSGCEPDVITYNTIL-----RTMFDNGKFKQAIGFWKDQLRKGCPPYLITY---TILI  264 (577)
Q Consensus       194 i~~~~~~g~~~~A-~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~  264 (577)
                      .+++.    .+.+ .+.|         .++..|..+.     +.+.....+..-++.+..    + +-+...|   ..++
T Consensus       111 ~~a~~----~~~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~----~-p~~l~~~l~d~r~m  172 (539)
T KOG0548|consen  111 AQAYL----EDYAADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK----N-PTSLKLYLNDPRLM  172 (539)
T ss_pred             HHhhh----HHHHhhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc----C-cHhhhcccccHHHH
Confidence            87771    1111 1111         1111221111     111111111111111111    0 0000000   0011


Q ss_pred             HHHHHcCCHHHH-HHHHHHHHH-cCCCC----------------------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          265 EQVCKQCGIARA-IEVLDDMAI-EGCSP----------------------DIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       265 ~~~~~~g~~~~A-~~~~~~~~~-~~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      .+.......+.- ...-..+.. .+..|                      -..-...+.++..+..+++.|.+-+.....
T Consensus       173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e  252 (539)
T KOG0548|consen  173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE  252 (539)
T ss_pred             HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            111000000000 000000000 00000                      112245567777788888888888888776


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008105          321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT-------YNILINGLCKYGLVDRAINSFNQMVSKNC  393 (577)
Q Consensus       321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~g~~~~A~~~~~~m~~~~~  393 (577)
                      ..  -+..-++....+|...|.+.......+...+.|.. ...-       +..+..+|.+.++++.|+..|.+.+....
T Consensus       253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R  329 (539)
T KOG0548|consen  253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR  329 (539)
T ss_pred             Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence            64  34444555666777788777777666665555421 1112       22344466667788888888888776544


Q ss_pred             CCCHHHH-------------------------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105          394 QPDIVTY-------------------------NTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM  448 (577)
Q Consensus       394 ~~~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  448 (577)
                      .|+...-                         ..-...+.+.|++..|.+.+.+++... +.|...|..-.-+|.+.|.+
T Consensus       330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~  408 (539)
T KOG0548|consen  330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEY  408 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhH
Confidence            4443211                         111334677899999999999999987 77899999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105          449 EKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY  505 (577)
Q Consensus       449 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  505 (577)
                      ..|++=.+..++.  .|+ ...|..=..++....+++.|.+.|.+..+.+  |+..-+
T Consensus       409 ~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~  462 (539)
T KOG0548|consen  409 PEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEA  462 (539)
T ss_pred             HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence            9999988888875  344 3345544555666678999999999988864  444433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.92  E-value=7.2e-05  Score=72.69  Aligned_cols=424  Identities=11%  Similarity=0.109  Sum_probs=223.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      +-|..+|+.||+-+... ..+++++.++++... ++.....|...|..-.+..+++...++|.+.+..  ..+...|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence            35788999999988777 999999999999875 5557778888999999999999999999998765  3467777777


Q ss_pred             HHHHHh-cCChHH----HHHHHHHHh-hCCCCC-CHHHHHHHHHHH---------HhCCChHHHHHHHHHHHHCCCCCCH
Q 008105          194 VGGLCK-RGQIRS----AIALLDEMS-VSGCEP-DVITYNTILRTM---------FDNGKFKQAIGFWKDQLRKGCPPYL  257 (577)
Q Consensus       194 i~~~~~-~g~~~~----A~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~~~~~~A~~~~~~~~~~~~~~~~  257 (577)
                      ++---+ .|+...    ..+.|+-.. +.|+.+ +-..|+..+..+         ..+.+.+...++|++++..-+.-=.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            763322 333332    223333332 334332 233355544432         3334555566666666543111101


Q ss_pred             HHHHHH------HHHH-------HHcCCHHHHHHHHHHHHH--cCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHhh
Q 008105          258 ITYTIL------IEQV-------CKQCGIARAIEVLDDMAI--EGCSPDIVTYNSLVNFSCKQGKYD--DAVLVINNLLS  320 (577)
Q Consensus       258 ~~~~~l------~~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~  320 (577)
                      ..|+..      ++..       -+...+..|.++++++..  +|......+       .-..|-.+  +..+++....+
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I~  245 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWIK  245 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHHH
Confidence            111110      0000       011223334444443322  121111111       00001011  11111211111


Q ss_pred             ----CCCC-CC--------HHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 008105          321 ----RGME-PN--------SITYNTLLHSLGSR-GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGL-------VD  379 (577)
Q Consensus       321 ----~g~~-p~--------~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~  379 (577)
                          .++. .+        ..+|...+..+.-. .-|-++...+....               +.+...|+       .+
T Consensus       246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s---------------~l~~~~~d~~~a~~~t~  310 (656)
T KOG1914|consen  246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS---------------DLLTEKGDVPDAKSLTD  310 (656)
T ss_pred             HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh---------------HHHHHhcccccchhhHH
Confidence                1111 00        00111111111000 00111111111110               11222222       34


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEG---MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG  456 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  456 (577)
                      ++..+++.....-...+...|..+.+.--..-   ..+.....++.+...-...-..+|..+++.-.+..-++.|..+|.
T Consensus       311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~  390 (656)
T KOG1914|consen  311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK  390 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence            55555655544322223333333332211111   234444555555443322234566777777777777888888888


Q ss_pred             HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008105          457 QMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKP  535 (577)
Q Consensus       457 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  535 (577)
                      +..+.+..+ ++...++++.-|| .++.+-|.++|+--.+.- .-+...-...++-+.+.++-..|..+|++.+..++.|
T Consensus       391 kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~  468 (656)
T KOG1914|consen  391 KAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA  468 (656)
T ss_pred             HHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence            888877666 6677777777665 467788888888755431 2233444667777888888888888888888776665


Q ss_pred             C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          536 D--DTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       536 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      +  ..+|..++.-=..-|+...+.++-+++..
T Consensus       469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5  47788888888888888888888777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.88  E-value=4.6e-06  Score=83.23  Aligned_cols=223  Identities=15%  Similarity=0.181  Sum_probs=116.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                      .+.....++.+|+.+++.+..+.  .-..-|..+...|+..|+++.|+++|.+..         .++-.|.+|.+.|+++
T Consensus       740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~  808 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE  808 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence            34445555666666666665542  223345555666666666666666665332         2344566666666666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      .|.++-.+...  .......|-+-..-+-+.|++.+|.+++-.+.    .|+     ..|.+|-+.|..+..+++.++-.
T Consensus       809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h  877 (1636)
T KOG3616|consen  809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH  877 (1636)
T ss_pred             HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence            66666554432  23344445444455556666666666554332    232     23556666666666665555432


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008105          460 ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTV  539 (577)
Q Consensus       460 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  539 (577)
                      ..   .-..|...+..-+-..|+...|.+-|-+..         -|...++.|-..+.|++|.++-+.-   | -.|..-
T Consensus       878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakte---g-g~n~~k  941 (1636)
T KOG3616|consen  878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAEK  941 (1636)
T ss_pred             hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHHH
Confidence            11   112344445555666677777666654432         2344555666666666666654432   2 223333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 008105          540 FSTIVKKVADDGMTEEAYKLWQK  562 (577)
Q Consensus       540 ~~~l~~~~~~~g~~~~A~~~~~~  562 (577)
                      ....+++-.--|  +.|.+++++
T Consensus       942 ~v~flwaksigg--daavkllnk  962 (1636)
T KOG3616|consen  942 HVAFLWAKSIGG--DAAVKLLNK  962 (1636)
T ss_pred             HHHHHHHHhhCc--HHHHHHHHh
Confidence            334444433334  455665554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.87  E-value=1.9e-07  Score=87.65  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=70.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCC
Q 008105          372 LCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGC  447 (577)
Q Consensus       372 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~  447 (577)
                      +...|++++|++++...      .+.......+..|.+.++++.|.+.++.|.+.+  .| .+...+..++..    ...
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence            33445555555554432      234444455555555555555555555555432  12 222223332221    224


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHHH
Q 008105          448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV-DMAIQVLE  526 (577)
Q Consensus       448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~  526 (577)
                      +.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+.. +..++..++.+....|+. +.+.+++.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            55566666665432 3455555556666666666666666666655543322 444555555555555555 44555555


Q ss_pred             HHH
Q 008105          527 LMI  529 (577)
Q Consensus       527 ~m~  529 (577)
                      ++.
T Consensus       261 qL~  263 (290)
T PF04733_consen  261 QLK  263 (290)
T ss_dssp             HCH
T ss_pred             HHH
Confidence            554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=0.00021  Score=72.87  Aligned_cols=60  Identities=12%  Similarity=0.127  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCccccC
Q 008105          517 KVDMAIQVLELMISSRYKPD----DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEKGTTLL  576 (577)
Q Consensus       517 ~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  576 (577)
                      +..+.++-...|.....-|+    ...|..|+..+....++..|-+.+++|..+.+..+..+++
T Consensus      1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s~~v 1369 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLSTFV 1369 (1416)
T ss_pred             hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchhccc
Confidence            66667777777776554443    5678889999999999999999999999988877766653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.84  E-value=2.2e-05  Score=81.44  Aligned_cols=182  Identities=12%  Similarity=-0.018  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQM  458 (577)
Q Consensus       379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  458 (577)
                      ..|+..+.+.++.. ..+...|+.|.-. ...|.+.-|..-|-.-.... +....+|..+.-.+.+..+++.|...|...
T Consensus       800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~  876 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV  876 (1238)
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence            45666666666542 3455566655443 54556665555554444332 445677877777788888999999999988


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--h--hCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 008105          459 MENGISPDDITHRTLIWGFCRADQVEEAVDLLKEI--G--KRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS----  530 (577)
Q Consensus       459 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----  530 (577)
                      +... +.|...|......-...|+.-++..+|..-  .  ..|-.+....|.+...--..+|+.++-+...+.+..    
T Consensus       877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a  955 (1238)
T KOG1127|consen  877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA  955 (1238)
T ss_pred             hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence            7642 234566666666666778888888888762  1  234455655665555556667776665554443322    


Q ss_pred             -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          531 -----SRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       531 -----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                           .+.+.+...|.+.....-+.+.+++|.++..+++
T Consensus       956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                 1444456778888888888888888887776654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.83  E-value=1.7e-07  Score=87.95  Aligned_cols=46  Identities=13%  Similarity=0.106  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105          343 WDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       343 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                      +.+|..+|+++.+. .++++.+.+.+..++...|++++|.+++.+..
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34444444443322 22333444444444444444444444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=0.00012  Score=76.24  Aligned_cols=234  Identities=15%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL  337 (577)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  337 (577)
                      ..|..+..+-.+.|.+.+|.+-|-+..      |+..|..++....+.|.+++-.+++....+...+|...  +.|+-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence            445555555555555555554443321      44555555555555555555555555444443333332  3445555


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008105          338 GSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEAL  417 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  417 (577)
                      ++.+++.+.++++.       -||......+.+-|...+.++.|.-+|..         +..|..+...+...|++..|.
T Consensus      1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHH
Confidence            55555544443321       24555555555555555555555544442         233555555666666666665


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          418 QLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       418 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  497 (577)
                      +--+..      .+..||..+-.+|...+.+.-|     +|-..++.....-...++.-|-..|-+++...+++......
T Consensus      1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred             HHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence            443322      1455666666666655544322     22222233344556667777777777777777776554311


Q ss_pred             CCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          498 NKMRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       498 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                       +..-..|+-+.-.|++- ++++..+.++-.
T Consensus      1310 -RAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1310 -RAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             -HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence             11233455555555543 344444444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=0.00014  Score=75.58  Aligned_cols=322  Identities=15%  Similarity=0.166  Sum_probs=218.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSG--GVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      |+..-+..+.++...+-..+.+++++++.-.+  +..+...-|.||-...+. +..+..+..+++...+ .|+      +
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence            44444455555656666666666666655321  111222233333333332 2334444444444322 122      2


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 008105          229 LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKY  308 (577)
Q Consensus       229 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  308 (577)
                      ......++-+++|..+|++.     ..+....+.|+.   .-+.+++|.+.-++..      .+..|..+..+-.+.|.+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence            33445566788888888774     345666666665   3466777777666553      457899999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          309 DDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQM  388 (577)
Q Consensus       309 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  388 (577)
                      .+|.+-|-+.      -|+..|..+++...+.|.+++..+.+....+....|..  =+.|+-+|++.++..+-.+++.  
T Consensus      1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-- 1190 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-- 1190 (1666)
T ss_pred             HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc--
Confidence            9998766443      27788999999999999999999999888777655544  4678999999999887766552  


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105          389 VSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI  468 (577)
Q Consensus       389 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  468 (577)
                           -|+......+.+-|...+.++.|.-++..         +..|..|...+...|++..|.+.-++.      .+..
T Consensus      1191 -----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1191 -----GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred             -----CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence                 57888888888999999999999887764         455778888889999998887665443      3677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          469 THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      ||-.+-.+|...+.+.-|     +|-..++.....-...++.-|-..|-+++-+.+++..+
T Consensus      1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            899998888877665543     34344444455567778888888888888888877654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.78  E-value=4.9e-05  Score=69.58  Aligned_cols=302  Identities=13%  Similarity=0.111  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITY-NMMV  194 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~li  194 (577)
                      ++.-.-.+...+...|++.+|+.-|...++.++. +-.++..-...|...|+...|+.=++..++.  +||-..- ..-.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            4444566788899999999999999998875321 2333333456788889999999988888875  6664322 2234


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCH----HH------------HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDV----IT------------YNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~------------~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  258 (577)
                      ..+.+.|.+++|..-|+.+.+..  |+.    ..            ....+..+...|+...|++....+++. .+-|..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~  190 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDAS  190 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhH
Confidence            56789999999999999998763  321    11            122334556688999999999998876 467888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-----
Q 008105          259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL-----  333 (577)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-----  333 (577)
                      .+..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++...++.++.  .||...+-..     
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK  267 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence            88888899999999999988777776653 335566666777888899999999999998876  5554322111     


Q ss_pred             --H------HHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          334 --L------HSLGSRGCWDAVDKILDIMNEASHSPTVFT---YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT  402 (577)
Q Consensus       334 --l------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  402 (577)
                        .      ......++|.++.+-.+...+.........   +..+-.++...+++.+|+..-.+.++.. +.|+.++.-
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~d  346 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCD  346 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHH
Confidence              1      112334556666666665555443212222   3334455666777888888887777653 344777777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCC
Q 008105          403 VLGALCKEGMLNEALQLLHLLNGSS  427 (577)
Q Consensus       403 li~~~~~~g~~~~A~~~~~~~~~~~  427 (577)
                      -..+|.-...++.|+.-|+...+.+
T Consensus       347 RAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  347 RAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            7778887778888888887777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.75  E-value=7e-05  Score=75.15  Aligned_cols=290  Identities=16%  Similarity=0.163  Sum_probs=167.1

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------------
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSG-------------------  182 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-------------------  182 (577)
                      +-|+.|.+.|.+..|.+....=..  ...|......+..++.+..-+++|-.+|+++..-.                   
T Consensus       620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiela  697 (1636)
T KOG3616|consen  620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA  697 (1636)
T ss_pred             HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH
Confidence            568999999999988876532221  23466667777777777666777777777664210                   


Q ss_pred             ---CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105          183 ---GVPDTITY-NMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       183 ---~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  258 (577)
                         ++..+++. ......+...|+++.|...|-+..         .....+.+....+.+.+|+.+++.+....  .-..
T Consensus       698 rfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~  766 (1636)
T KOG3616|consen  698 RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASG  766 (1636)
T ss_pred             HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccc
Confidence               00000000 001111112222222222221111         11122334455667777777777766542  2334


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG  338 (577)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  338 (577)
                      .|..+.+.|+..|+++.|.++|-+.-         .++-.|.+|.+.|++++|.++-.+..  |.+.....|.+-..-+-
T Consensus       767 yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld  835 (1636)
T KOG3616|consen  767 YYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD  835 (1636)
T ss_pred             cchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence            56667777888888888888876542         35667778888888888877766554  33444556666666667


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105          339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ  418 (577)
Q Consensus       339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  418 (577)
                      +.|++.+|++++-.+..    |+     ..|.+|-+.|..+..+++..+-....   -..|...+..-+-..|++..|..
T Consensus       836 ehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~  903 (1636)
T KOG3616|consen  836 EHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEE  903 (1636)
T ss_pred             hhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHH
Confidence            77788777777654432    33     24667777787777777766543211   12344445556667777777776


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105          419 LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG  456 (577)
Q Consensus       419 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  456 (577)
                      .|-+..         -|.+-+++|-..+-|++|.++-+
T Consensus       904 ~flea~---------d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  904 HFLEAG---------DFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             HHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence            664432         24555666666666666655543

>PLN02789 farnesyltranstransferase

Probab=98.71  E-value=2.5e-05  Score=74.49  Aligned_cols=216  Identities=10%  Similarity=0.054  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      .++..+-..+...++.++|+.+.+.+++.++. +..+|+.....+...| ++++++..++++.+.+ +.+..+|+.....
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~  115 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence            35566667777788999999999999987533 5667777777777777 5789999999998876 4456677766656


Q ss_pred             HHhcCCh--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---C
Q 008105          197 LCKRGQI--RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ---C  271 (577)
Q Consensus       197 ~~~~g~~--~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g  271 (577)
                      +.+.|+.  +++...++++.+.. +.|..+|+...-++...|+++++++.++++++.+ +.|..+|+.....+.+.   |
T Consensus       116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence            6666653  67788888888765 5678888888888888889999999999998875 44666776665555444   2


Q ss_pred             CH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105          272 GI----ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ----GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS  339 (577)
Q Consensus       272 ~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  339 (577)
                      ..    +++.+...+++... +-+...|+.+...+...    +...+|.+.+.+..+.+ ..+......|++.|+.
T Consensus       194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            22    45666665666553 34667777777777663    33455777776665543 2245566667777664

>PLN02789 farnesyltranstransferase

Probab=98.69  E-value=3.8e-05  Score=73.30  Aligned_cols=220  Identities=9%  Similarity=-0.002  Sum_probs=102.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHH
Q 008105          340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG-LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGML--NEA  416 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A  416 (577)
                      .+..++|..+.+++++.. +.+..+|+.....+.+.| ++++++..++++.+.+ +.+..+|+.....+.+.|+.  +++
T Consensus        50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence            344455555555554432 123334444444444444 3455555555555443 33333444333333333332  344


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHHHHH
Q 008105          417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA---DQ----VEEAVDL  489 (577)
Q Consensus       417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~----~~~A~~~  489 (577)
                      ..+++.+.+.. +.+..+|+...-.+.+.|+++++++.++++++.+. -|...|+.....+.+.   |.    .++..++
T Consensus       128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            55555555443 34455555555555555555666666666555432 2334444444333332   11    1344555


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------------
Q 008105          490 LKEIGKRGNKMRNSAYRLVIHGLCKS----KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG--------------  551 (577)
Q Consensus       490 ~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------------  551 (577)
                      ..++..... -|...|+.+...+...    ++..+|.+.+.+..+.+ ..+......|++.|+...              
T Consensus       206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~  283 (320)
T PLN02789        206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA  283 (320)
T ss_pred             HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence            545444332 2445555555555442    23344656655554322 223445555566555421              


Q ss_pred             ----CHHHHHHHHHHHHH
Q 008105          552 ----MTEEAYKLWQKLIE  565 (577)
Q Consensus       552 ----~~~~A~~~~~~~~~  565 (577)
                          ..++|.++++.+.+
T Consensus       284 ~~~~~~~~a~~~~~~l~~  301 (320)
T PLN02789        284 EELSDSTLAQAVCSELEV  301 (320)
T ss_pred             cccccHHHHHHHHHHHHh
Confidence                23567777777743

>PF12854 PPR_1: PPR repeat

Probab=98.66  E-value=3.2e-08  Score=59.08  Aligned_cols=32  Identities=31%  Similarity=0.548  Sum_probs=24.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 008105          112 FVENDEKTNNKILQNFCSRGKLTDASKLIDIM  143 (577)
Q Consensus       112 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~  143 (577)
                      |+.||.++||.||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56777777777777777777777777777776

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.66  E-value=2.6e-05  Score=83.64  Aligned_cols=227  Identities=11%  Similarity=0.022  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          293 VTYNSLVNFSCKQGKYDDAVLVINNLLSR-GMEP---NSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL  368 (577)
Q Consensus       293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  368 (577)
                      ..|-..|....+.++.++|+++.++.+.. ++.-   -...|.++++.-..-|.-+...++|++..+..  ....+|..|
T Consensus      1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence            44555555555555555555555554432 1100   11234444444444455555555555555431  223345555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHhcCC
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-PCLITYNTLIDGLAKKGC  447 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~  447 (577)
                      ...|.+.+..++|.++++.|.+. +......|...+..+.+.++-++|..++.+..+.-.. .......-.+..-.+.|+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            55555555555555555555554 1234455555555555555555555555554443110 122233333444445556


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHH
Q 008105          448 MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQ  523 (577)
Q Consensus       448 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~  523 (577)
                      .+.+..+|+..... .+--...|+..++.-.++|+.+.++.+|++....++.|.  -..|...+..--..|+-+.++.
T Consensus      1616 aeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             chhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            56666666555543 122344555666655566666666666666555544443  2344444444444454444333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.64  E-value=0.0001  Score=75.02  Aligned_cols=351  Identities=13%  Similarity=0.103  Sum_probs=199.3

Q ss_pred             ChhhHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC--------C
Q 008105          151 DFHFCINLI--RGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GC--------E  219 (577)
Q Consensus       151 ~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~--------~  219 (577)
                      |..|-..++  +.|...|+.+.|.+-.+.+.      +...|..+..++.+..+++-|.-.+-.|... |.        .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            445555554  33556788888887777664      4467888888888888877776666555421 10        1


Q ss_pred             CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105          220 PDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV  299 (577)
Q Consensus       220 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  299 (577)
                      ++ .+=....-.....|.+++|..+|++..+.         ..|=..|-..|.|++|.++-+.-.+..   =..||....
T Consensus       799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA  865 (1416)
T KOG3617|consen  799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA  865 (1416)
T ss_pred             Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence            11 11112222334567888888888776542         233355667788888887765432221   124555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                      ..+-..++.+.|++.|++.-..    --..+..|      ..++...+.+.+.+      .|...|.-....+-..|+.+
T Consensus       866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL------~e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd  929 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVH----AFEVFRML------KEYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD  929 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCCh----HHHHHHHH------HhChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence            6666677788887777654311    11111111      12233333333333      24455666666666789999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      .|+.+|.....         |-+++...|-.|+.++|-++-++-   |   |......|.+.|-..|++.+|..+|.+..
T Consensus       930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99998887653         556677777888888888776542   2   55666678888888999999988888765


Q ss_pred             HCC--C------CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHH---
Q 008105          460 ENG--I------SPDDITHRTLIWGFCRA--DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE---  526 (577)
Q Consensus       460 ~~g--~------~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---  526 (577)
                      ...  +      ..+...+    ..+..+  .+.-.|.++|++.-.   .     +...+..|-+.|.+.+|+++-=   
T Consensus       995 afsnAIRlcKEnd~~d~L~----nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen  995 AFSNAIRLCKENDMKDRLA----NLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred             HHHHHHHHHHhcCHHHHHH----HHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence            310  0      0011111    111111  223334444443321   1     1123344666777776665421   


Q ss_pred             -----HHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          527 -----LMISSR--YKPDDTVFSTIVKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       527 -----~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (577)
                           +++...  -..|+...+.-.+-+....++++|..++-..
T Consensus      1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred             ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 111122  2345666666666677777777776665443

>PF12854 PPR_1: PPR repeat

Probab=98.64  E-value=4.3e-08  Score=58.52  Aligned_cols=32  Identities=47%  Similarity=0.951  Sum_probs=17.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEM  213 (577)
Q Consensus       182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  213 (577)
                      |+.||..+||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.63  E-value=3e-06  Score=84.90  Aligned_cols=216  Identities=16%  Similarity=0.103  Sum_probs=151.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          330 YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK  409 (577)
Q Consensus       330 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  409 (577)
                      -..+...+.+.|-...|..+++++.         .|...+.+|...|+..+|..+..+..++  +|++..|..+.+....
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence            3445666777788888888887664         3566777888888888888887777764  7788888888877777


Q ss_pred             cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      ..-+++|.++.+....+       .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            66777887777655332       11111112233677888888887766542 23456777777777788888888888


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      |....... +-+...|+.+-.+|.+.|+-.+|...+++..+.+ .-+..+|...+-...+.|.+++|.+.+.++.+.
T Consensus       542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            87777643 2245678888888888888888888888888766 445566666666777888888888888877653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=8.5e-06  Score=79.68  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=49.0

Q ss_pred             HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 008105          232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDA  311 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  311 (577)
                      +.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.+|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            345566666666666655543 4455566666666666666666666666665543 22344555555556666666666


Q ss_pred             HHHHHHHhh
Q 008105          312 VLVINNLLS  320 (577)
Q Consensus       312 ~~~~~~m~~  320 (577)
                      +..++..+.
T Consensus       373 l~~L~~Wi~  381 (579)
T KOG1125|consen  373 LKMLDKWIR  381 (579)
T ss_pred             HHHHHHHHH
Confidence            666655543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.62  E-value=1.3e-05  Score=80.55  Aligned_cols=222  Identities=11%  Similarity=0.070  Sum_probs=174.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT  332 (577)
Q Consensus       253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  332 (577)
                      .+|-...-..+...+.+.|-+..|..+|++..         .|...|..|+..|+..+|..+..+-.++  +||...|..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~  462 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL  462 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence            34444555667778888999999999998774         5777888999999999999998888874  788889988


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM  412 (577)
Q Consensus       333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  412 (577)
                      +.+......-+++|.++.+.....       .-..+.......+++.++.+.|+.-.+.+ +....+|-.+.-+..+.++
T Consensus       463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence            888887777788888888766443       11112222233688999999998887765 5567788888888889999


Q ss_pred             hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKE  492 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  492 (577)
                      ++.|.+.|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+-|.+++|.+.+.+
T Consensus       535 ~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            999999998877653 4566789999999999999999999999999876 44566677777778889999999999988


Q ss_pred             Hhh
Q 008105          493 IGK  495 (577)
Q Consensus       493 m~~  495 (577)
                      +..
T Consensus       613 ll~  615 (777)
T KOG1128|consen  613 LLD  615 (777)
T ss_pred             HHH
Confidence            765

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=9.3e-06  Score=79.41  Aligned_cols=219  Identities=15%  Similarity=0.103  Sum_probs=150.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      .-+.+.|++.+|.-.|+...+.. +-+...|..|....+.+++-..|+..+++.++.. |-|.....+|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence            34668999999999999988775 5678999999999999999999999999999874 667888899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHH-----------HHHHhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHccCC
Q 008105          275 RAIEVLDDMAIEGCSPDIVTYNSLV-----------NFSCKQGKYDDAVLVINNLL-SRGMEPNSITYNTLLHSLGSRGC  342 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~  342 (577)
                      +|++.++.-+....+     |..+.           ..+.....+.+..++|-++. ..+..+|......|.-.|.-.|+
T Consensus       371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            999999998764211     00000           01111112233344444433 33333555555666666666777


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 008105          343 WDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD-IVTYNTVLGALCKEGMLNEALQLLH  421 (577)
Q Consensus       343 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~  421 (577)
                      +++|...|+...... |-|...||.|...++...+.++|+..|++.++.  .|+ +.+...|.-+|...|.+++|.+.|-
T Consensus       446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            777777777776653 346667777777777777777777777777765  333 3344445556777777777776664


Q ss_pred             HH
Q 008105          422 LL  423 (577)
Q Consensus       422 ~~  423 (577)
                      ..
T Consensus       523 ~A  524 (579)
T KOG1125|consen  523 EA  524 (579)
T ss_pred             HH
Confidence            33

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=3.5e-05  Score=82.64  Aligned_cols=228  Identities=14%  Similarity=0.079  Sum_probs=179.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008105          326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEA-SHSP---TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYN  401 (577)
Q Consensus       326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  401 (577)
                      +...|-..|......++.+.|+++.++.... ++.-   -.-.|.++++.-..-|.-+...++|+++.+.  -.....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence            4557888888888999999999999988754 1111   2246788888777788888899999999876  23456788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008105          402 TVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFC  478 (577)
Q Consensus       402 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~  478 (577)
                      .|...|.+.+..++|.++++.|.++- ......|...+..+.++.+-++|..++.+..+.  -|.   .....-.+..-.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence            89999999999999999999998864 467789999999999999999999999999874  243   334455566667


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 008105          479 RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD--TVFSTIVKKVADDGMTEEA  556 (577)
Q Consensus       479 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A  556 (577)
                      +.|+.+++..+|+.......+ ....|+.+|+.-.++|+.+.++.+|++....++.|-.  ..|...+..=-..|+-+.+
T Consensus      1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            899999999999998876433 5678999999999999999999999999998887753  4566666655666765544


Q ss_pred             HHH
Q 008105          557 YKL  559 (577)
Q Consensus       557 ~~~  559 (577)
                      +.+
T Consensus      1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred             HHH
Confidence            433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.60  E-value=0.00027  Score=73.71  Aligned_cols=418  Identities=9%  Similarity=-0.032  Sum_probs=229.9

Q ss_pred             ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105          132 KLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLD  211 (577)
Q Consensus       132 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  211 (577)
                      +...|+..|-+..+..+. =...|..|...|+...+...|.+.|+...+.. ..|...+....+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            377788888777776432 35578888888888888999999999998765 4577888889999999999999998844


Q ss_pred             HHhhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008105          212 EMSVSG-CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP  290 (577)
Q Consensus       212 ~~~~~g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  290 (577)
                      ...+.. ...-...|....-.|.+.++...|+.-|+..++.. |.|...|..+..+|.+.|++..|.++|.++...  .|
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence            433321 01112233344455677889999999998888763 667889999999999999999999999888765  33


Q ss_pred             CH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHH-------HHHhC
Q 008105          291 DI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRG------MEPNSITYNTLLHSLGSRGCWDAVDKILD-------IMNEA  356 (577)
Q Consensus       291 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~-------~~~~~  356 (577)
                      +. ..---....-+..|++.+|+..+.......      ..--..++..+...+...|-...+..+++       -....
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            32 222223344677889999988887765431      00011122222222222222222222222       22222


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHHCCC--------------------CCCHHHHHHHHHHHHh
Q 008105          357 SHSPTVFTYNILINGLCKYGLVD------RAINSF-NQMVSKNC--------------------QPDIVTYNTVLGALCK  409 (577)
Q Consensus       357 ~~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~m~~~~~--------------------~~~~~~~~~li~~~~~  409 (577)
                      ....+...|-.+.++|.-.-..+      .-..++ .+....+.                    ..++.+|..+...|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            21223333332222221100000      000000 01111111                    1122333333333222


Q ss_pred             ----cC----ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          410 ----EG----MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD  481 (577)
Q Consensus       410 ----~g----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  481 (577)
                          .+    +...|..-+....+.. ..+..+|+.|.-. ...|++.-|...|-+-+... +....+|..+.-.+....
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~  864 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ  864 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence                11    1223444444443332 3345556555443 44455555555554443321 234556666666666777


Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI----SSRYKPDDTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~  557 (577)
                      +++-|...|.......+ .|...|..........|+.-++..+|..-.    ..|-.|+..-|-+........|+.++-+
T Consensus       865 d~E~A~~af~~~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I  943 (1238)
T KOG1127|consen  865 DFEHAEPAFSSVQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI  943 (1238)
T ss_pred             cHHHhhHHHHhhhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence            77778877777766532 255556555555556677777777766521    1244455555544444455555555443


Q ss_pred             H
Q 008105          558 K  558 (577)
Q Consensus       558 ~  558 (577)
                      .
T Consensus       944 ~  944 (1238)
T KOG1127|consen  944 N  944 (1238)
T ss_pred             H
Confidence            3

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.59  E-value=1e-05  Score=74.67  Aligned_cols=188  Identities=13%  Similarity=0.046  Sum_probs=130.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI-P-DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT--IT  189 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~  189 (577)
                      +.....+..+...+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|...++++.+..+....  ..
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456778889999999999999999999999886432 1 1246777889999999999999999999886532121  24


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          190 YNMMVGGLCKR--------GQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY  260 (577)
Q Consensus       190 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  260 (577)
                      +..+...+...        |++++|.+.|+++...  .|+ ...+..+.....    ....      .        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence            55555555554        7788999999988865  343 223322221110    0000      0        0111


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIEGC--SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ..+...+.+.|++++|...++.......  +.....+..+..++.+.|++++|..+++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            2455678889999999999998887631  123467888889999999999999988887765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.54  E-value=1.9e-05  Score=72.89  Aligned_cols=187  Identities=12%  Similarity=-0.024  Sum_probs=127.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH--HH
Q 008105          360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI---VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL--IT  434 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~  434 (577)
                      .....+..+...+.+.|++++|...|+++.... +.++   .++..+..++.+.|++++|...++.+.+.......  .+
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456677778888889999999999999988763 2222   46677788888999999999999988776421111  24


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105          435 YNTLIDGLAKK--------GCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY  505 (577)
Q Consensus       435 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  505 (577)
                      +..+..++...        |++++|.+.|+++.+..  |+.. .+..+.....    ....      .        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~------~--------~~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNR------L--------AGKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHH------H--------HHHH
Confidence            55555555554        67888888888887752  4432 2222211100    0000      0        0111


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          506 RLVIHGLCKSKKVDMAIQVLELMISSR--YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       506 ~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      ..+...+.+.|++++|...+++.++..  -+.....+..+..++...|++++|..+++.+....
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            245667889999999999999998642  12235788899999999999999999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.53  E-value=4.2e-05  Score=67.77  Aligned_cols=158  Identities=15%  Similarity=0.067  Sum_probs=84.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105          366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK  445 (577)
Q Consensus       366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  445 (577)
                      ..+-..+...|+-+....+........ +.|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            344444555555555555554433321 3344444445555566666666666666655544 55566666666666666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105          446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL  525 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  525 (577)
                      |+++.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            66666666666655531 123444555555555566666666666655544322 3344444555555666666665555


Q ss_pred             HH
Q 008105          526 EL  527 (577)
Q Consensus       526 ~~  527 (577)
                      ..
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            43

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.50  E-value=0.0024  Score=66.28  Aligned_cols=225  Identities=14%  Similarity=0.176  Sum_probs=154.1

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          126 NFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRG--LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      -....+++..|.+..+...+..  ||.. |..++.+  +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence            3456788999999999988863  4444 4444444  45889999999888888766644 888999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------CH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC----------GI  273 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~  273 (577)
                      ++|..+|++..+.  .|+......+..+|.+.+++.+-.+.--++.+ ..+-+...+=++++.....-          -.
T Consensus        94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen   94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhH
Confidence            9999999999876  57788888888999998887764444333333 24555555555555544321          13


Q ss_pred             HHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHH-HHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105          274 ARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYDDAVLVIN-NLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       274 ~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      .-|.+.++.+.+.+ ---+..-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~  250 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS  250 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence            44666667766653 11112222223344567788999999884 34433333344455566777888899999999888


Q ss_pred             HHHhCC
Q 008105          352 IMNEAS  357 (577)
Q Consensus       352 ~~~~~~  357 (577)
                      ++.+.+
T Consensus       251 ~Ll~k~  256 (932)
T KOG2053|consen  251 RLLEKG  256 (932)
T ss_pred             HHHHhC
Confidence            888876

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.50  E-value=2.1e-05  Score=69.75  Aligned_cols=119  Identities=13%  Similarity=0.112  Sum_probs=73.3

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhCCC--hHHH
Q 008105          165 IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM-FDNGK--FKQA  241 (577)
Q Consensus       165 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-~~~~~--~~~A  241 (577)
                      .++.+++...++..++.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            455566666666666554 4566666666666777777777777776666554 34555666665543 45555  3666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          242 IGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      .+++++.++.. +.+..++..+...+.+.|++++|...|+++.+.
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66666666553 345556666666666666666666666666654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.46  E-value=5.4e-05  Score=67.17  Aligned_cols=156  Identities=10%  Similarity=0.066  Sum_probs=108.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM  448 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  448 (577)
                      +..|...|+++......+.+..    |.        ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            4567788888776444432221    11        01223566677777777777665 67788888888888888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105          449 EKAMVLYGQMMENGISPDDITHRTLIWGF-CRADQ--VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL  525 (577)
Q Consensus       449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  525 (577)
                      ++|...|++..+.. +.+...+..+..++ ...|+  .++|.+++++..+.+.. +...+..+...+...|++++|+..|
T Consensus        90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~  167 (198)
T PRK10370         90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW  167 (198)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888888753 23566777777763 56666  48888888888876533 6677777888888888888888888


Q ss_pred             HHHHHCCCCCCHHHH
Q 008105          526 ELMISSRYKPDDTVF  540 (577)
Q Consensus       526 ~~m~~~~~~p~~~~~  540 (577)
                      +++.+.. +|+..-+
T Consensus       168 ~~aL~l~-~~~~~r~  181 (198)
T PRK10370        168 QKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHhhC-CCCccHH
Confidence            8888642 4444333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.45  E-value=0.0021  Score=62.94  Aligned_cols=394  Identities=12%  Similarity=0.102  Sum_probs=204.8

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      +-|..+|+.||+-+-.+ .++++++.++++...- +-....|..-|..-.+..+++...++|.+....  ..+...|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence            44888888888866555 8888888888887642 445667888888888888888888888887654  3566677666


Q ss_pred             HHHHHh-CCChHH----HHHHHHHHHH-CCCCCC-HHHHHHHHH---------HHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008105          229 LRTMFD-NGKFKQ----AIGFWKDQLR-KGCPPY-LITYTILIE---------QVCKQCGIARAIEVLDDMAIEGCSPDI  292 (577)
Q Consensus       229 i~~~~~-~~~~~~----A~~~~~~~~~-~~~~~~-~~~~~~l~~---------~~~~~g~~~~A~~~~~~~~~~~~~~~~  292 (577)
                      +.--.+ .++...    ..+.|+-.+. .|..+- ...|+..+.         .+..+.+++...++++++...-+..=.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            654333 222222    2233333322 232221 122333332         122333445555555555532111001


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCH--------
Q 008105          293 VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE--ASHSPTV--------  362 (577)
Q Consensus       293 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--------  362 (577)
                      ..|+-..                 ...+   ..|..|-.-++  --+...+..|.++++++..  .|...+.        
T Consensus       173 kLW~DY~-----------------~fE~---~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T  230 (656)
T KOG1914|consen  173 KLWKDYE-----------------AFEQ---EINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGT  230 (656)
T ss_pred             HHHHHHH-----------------HHHH---HHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCC
Confidence            1222110                 0000   00111111111  0112233344444443321  1111100        


Q ss_pred             -------HHHHHHHHHHHHcCCH---------HHHHHHHHHHH-HCCCCCCHHHHH-----HHHHHHHhcCC-------h
Q 008105          363 -------FTYNILINGLCKYGLV---------DRAINSFNQMV-SKNCQPDIVTYN-----TVLGALCKEGM-------L  413 (577)
Q Consensus       363 -------~~~~~li~~~~~~g~~---------~~A~~~~~~m~-~~~~~~~~~~~~-----~li~~~~~~g~-------~  413 (577)
                             ..|-.+|.- -+.+-+         .+..-.+++.+ -.+..|++.-..     ..-+.+...|+       .
T Consensus       231 ~~e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t  309 (656)
T KOG1914|consen  231 KDEIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT  309 (656)
T ss_pred             hHHHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence                   012222211 111100         01111122211 112222221100     01112233333       3


Q ss_pred             hHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          414 NEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENG-ISPDDITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       414 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      +++..+++.....-...+..+|..+.+---..-   ..+.....++++...- +.|+ .+|..++..-.+..-++.|..+
T Consensus       310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHH
Confidence            455556655544332334444544443221111   2566666777766432 3333 4677888888888889999999


Q ss_pred             HHHHhhCCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          490 LKEIGKRGNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       490 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      |.+..+.+..+ ++..+++++.-+| .++.+-|.++|+--+++ +..++.-....++-+.+.|+-..|+.+|++.+..++
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            99999977766 5666677776665 67899999999987653 344455556788899999999999999999998865


Q ss_pred             CCCc
Q 008105          569 FEKG  572 (577)
Q Consensus       569 ~~~~  572 (577)
                      .++.
T Consensus       467 ~~~k  470 (656)
T KOG1914|consen  467 SADK  470 (656)
T ss_pred             Chhh
Confidence            5543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.44  E-value=0.00019  Score=63.66  Aligned_cols=138  Identities=16%  Similarity=0.081  Sum_probs=66.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 008105          370 NGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----K  445 (577)
Q Consensus       370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~  445 (577)
                      ..|+..|++++|++......      +......=+..+.+..+.+-|.+.++.|.+..   +..|.+-|..++.+    .
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence            34555555555555554411      22222222333444455555555555555432   34444444444432    2


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh
Q 008105          446 GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV  518 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  518 (577)
                      +.+..|.-+|++|-+. ..|+..+.+....++...|++++|..++++....... ++.+...++-+-...|..
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence            3455555566665542 3455555555555555566666666666655554322 344444444444444443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.43  E-value=6.9e-05  Score=66.44  Aligned_cols=159  Identities=15%  Similarity=0.101  Sum_probs=102.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105          156 INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN  235 (577)
Q Consensus       156 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  235 (577)
                      ..+-..+...|+-+....+........ +.|....+.++....+.|++..|...|.+..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            445566666676666666666544332 3455555666777777777777777777776554 66777777777777777


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 008105          236 GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVI  315 (577)
Q Consensus       236 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  315 (577)
                      |++++|..-|.+..+. .+-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|++++|..+.
T Consensus       148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            7777777777776654 23345556666666666777777777777666553 225555666666667777777776665


Q ss_pred             HHH
Q 008105          316 NNL  318 (577)
Q Consensus       316 ~~m  318 (577)
                      ..-
T Consensus       226 ~~e  228 (257)
T COG5010         226 VQE  228 (257)
T ss_pred             ccc
Confidence            443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.43  E-value=0.00015  Score=77.19  Aligned_cols=241  Identities=9%  Similarity=0.050  Sum_probs=154.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      ...+...|..|++.|...+++++|.++.+...+.. +-....|..+...+.+.++..++..+  .               
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------   88 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------   88 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------
Confidence            34567889999999999999999999999777753 22333344444456666766555544  2               


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  272 (577)
                      ++.......++.-...+...|...  .-+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+...|... +
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence            233333333443333333444443  2345577888889999999999999999998876 66888888888888888 8


Q ss_pred             HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105          273 IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       273 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      +++|.+++.+....               +...+++..+.++|.++...  .|+..               +.-..+.+.
T Consensus       165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~k  212 (906)
T PRK14720        165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERK  212 (906)
T ss_pred             HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHH
Confidence            99998888877654               66667788888888888766  22221               122222222


Q ss_pred             HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          353 MNEA-SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC  408 (577)
Q Consensus       353 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  408 (577)
                      +... +...-+.++-.+-..|.+..+++++..+++.+++.. +.|..+..-++..|.
T Consensus       213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            2221 222334445555566666777777777777777664 335555555555554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00024  Score=63.05  Aligned_cols=86  Identities=15%  Similarity=0.101  Sum_probs=37.5

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008105          302 SCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG----SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGL  377 (577)
Q Consensus       302 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  377 (577)
                      +.+..+++-|.+.+++|.+..   +..|.+.|..++.    ..+...+|.-+|++|.+. .+|+..+.+-...++...|+
T Consensus       147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~  222 (299)
T KOG3081|consen  147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR  222 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence            344444445555555544331   2233333333332    123344444455544432 23444444444444444555


Q ss_pred             HHHHHHHHHHHHHC
Q 008105          378 VDRAINSFNQMVSK  391 (577)
Q Consensus       378 ~~~A~~~~~~m~~~  391 (577)
                      +++|..++++.+.+
T Consensus       223 ~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  223 YEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHHHHHhc
Confidence            55555555554444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.40  E-value=3.5e-05  Score=64.60  Aligned_cols=95  Identities=8%  Similarity=-0.082  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.. +.+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            3344555566666666666666666554 3355566666666666666666666666666543 4455566666666666


Q ss_pred             CCChHHHHHHHHHHHHC
Q 008105          235 NGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~  251 (577)
                      .|++++|+..|+..++.
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666666553

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.39  E-value=0.00021  Score=75.34  Aligned_cols=147  Identities=13%  Similarity=0.092  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 008105          219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSL  298 (577)
Q Consensus       219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  298 (577)
                      ..++..+..|.....+.|.+++|..+++...+.. |-+......+...+.+.+++++|+..+++..... +-+......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence            4557777777777777788888888877777652 4455666667777777777777777777777663 2244556666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILI  369 (577)
Q Consensus       299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  369 (577)
                      ..++.+.|++++|..+|+++...+ .-+..++..+...+-..|+.++|...|+...+.. .+....|+..+
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~  229 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence            677777777777777777777642 2235667777777777777777777777776542 23334444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.38  E-value=0.00024  Score=74.88  Aligned_cols=136  Identities=10%  Similarity=0.008  Sum_probs=96.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          358 HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNT  437 (577)
Q Consensus       358 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~  437 (577)
                      .+.+...+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|+...++..... +.+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            34456777777777777788888888877777763 3345556667777777778888877777777764 445566667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      +..++.+.|++++|.++|++....+ +-+..++..+...+...|+.++|...|++..+.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7777777788888888888777632 233667777777777778888887777777653

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.37  E-value=0.00024  Score=75.68  Aligned_cols=150  Identities=13%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          329 TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC  408 (577)
Q Consensus       329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  408 (577)
                      .+..+..+|-+.|+.+++..+++++.+.. +.|+.+.|.+...|+.. ++++|++++.+....               +.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence            55555556666666666666666665554 34555556665555555 666666555554432               44


Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~  487 (577)
                      ..+++.++..+|..+.... +.+...+..                +.+.+... |..--..++..+-..|....+++++.
T Consensus       181 ~~kq~~~~~e~W~k~~~~~-~~d~d~f~~----------------i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYN-SDDFDFFLR----------------IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             hhhcchHHHHHHHHHHhcC-cccchHHHH----------------HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence            4445555555555555442 111112111                11222111 11122334444555566666777777


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105          488 DLLKEIGKRGNKMRNSAYRLVIHGLC  513 (577)
Q Consensus       488 ~~~~~m~~~~~~~~~~~~~~li~~~~  513 (577)
                      .+++.+.+.... |.....-++.+|.
T Consensus       244 ~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        244 YILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            777777765433 4445555555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.32  E-value=3.5e-05  Score=64.58  Aligned_cols=108  Identities=11%  Similarity=-0.062  Sum_probs=92.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      |+..+..+...+.+.|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+.. +.+...+..+..
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~  100 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV  100 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            34446678899999999999999999999875 4488899999999999999999999999999876 568889999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYN  226 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~  226 (577)
                      ++.+.|++++|.+.|+...+.. +.+...|.
T Consensus       101 ~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~  130 (144)
T PRK15359        101 CLKMMGEPGLAREAFQTAIKMS-YADASWSE  130 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence            9999999999999999998763 33344443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.27  E-value=0.0005  Score=66.48  Aligned_cols=116  Identities=19%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY-LITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      ..|++++|+..++.+...- +-|+.-+......+.+.++.++|.+.+++++..  .|+ ....-.+..++.+.|+..+|.
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence            4455555555555554431 223444444445555555555555555555543  222 334444455555555555555


Q ss_pred             HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          278 EVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL  318 (577)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  318 (577)
                      +++++..... +-|+..|..|..+|...|+..++..-..+.
T Consensus       395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            5555555442 334555555555555555555555544444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.25  E-value=0.00041  Score=67.05  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105          371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEK  450 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  450 (577)
                      .+...|+.++|+..++.++... +.|+.-+....+.+.+.++..+|.+.++.+.... +-.....-.+..+|.+.|++.+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence            3444566666666666665542 4455555555566666666666666666666543 2224455555666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      |..++++.... .+-|+..|..|..+|...|+..++..-..+                  .+...|+++.|...+....+
T Consensus       393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence            66666666544 244566666666666666665555443322                  24445666666666666654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.19  E-value=9e-05  Score=61.61  Aligned_cols=97  Identities=12%  Similarity=0.056  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM  232 (577)
Q Consensus       153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  232 (577)
                      .....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++..+.+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            334445555555666666666666655543 3345555555566666666666666666555443 33455555555556


Q ss_pred             HhCCChHHHHHHHHHHHHC
Q 008105          233 FDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       233 ~~~~~~~~A~~~~~~~~~~  251 (577)
                      ...|++++|.+.|+...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666555543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.16  E-value=0.00012  Score=60.83  Aligned_cols=97  Identities=12%  Similarity=0.037  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      .....+...+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|...++.....+ +.+...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            344455555666666666666666665543 3455556666666666666666666666655442 44455555555566


Q ss_pred             HHcCCHHHHHHHHHHHHHc
Q 008105          268 CKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       268 ~~~g~~~~A~~~~~~~~~~  286 (577)
                      ...|++++|.+.|+...+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI  114 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666655554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.07  E-value=0.00026  Score=59.54  Aligned_cols=126  Identities=16%  Similarity=0.091  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHH
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLV  508 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l  508 (577)
                      .|..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+......|+  ......+
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 3667777777777777642 122   12333455667777888888888888777543332  2234446


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (577)
                      ...+...|++++|+..++.....  ...+..+....+.+.+.|++++|+..|++.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            67777788888888887664322  234455666777788888888888877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.05  E-value=0.011  Score=59.81  Aligned_cols=330  Identities=13%  Similarity=0.122  Sum_probs=174.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 008105          184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GCEP--------DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP  254 (577)
Q Consensus       184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~  254 (577)
                      .|.+..|..+.......-.++.|...|-+.... |++.        +...-.+=+.+  --|++++|.++|-++-++.  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence            577788888887777777777777777665432 2210        00011111222  2478888888887765542  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          255 PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS--PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT  332 (577)
Q Consensus       255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  332 (577)
                             ..+..+.+.|++-...++++.--. +..  .-...|+.+...++....+++|.+.+......         ..
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~  827 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN  827 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence                   234566677777777766643211 000  01256777777788777888887777654321         23


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          333 LLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM  412 (577)
Q Consensus       333 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  412 (577)
                      .+.++.+..++++.+.+...+.     .+....-.+.+++...|.-++|.+.|-+-.    .|     .+.+..|...++
T Consensus       828 ~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ  893 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ  893 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence            4555556666666555554443     344455667777777777777776664322    11     133556666677


Q ss_pred             hhHHHHHHHHHhhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHH----H
Q 008105          413 LNEALQLLHLLNGSSCSPCLITY--------------NTLIDGLAKKGCMEKAMVLYGQMME----NGISPDDIT----H  470 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~----~  470 (577)
                      +.+|.++-+...    -|.+.+.              .--|..+.+.|+.-.|.+++.+|.+    .+.+|-..-    .
T Consensus       894 W~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL  969 (1189)
T KOG2041|consen  894 WGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVL  969 (1189)
T ss_pred             HHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHH
Confidence            777766654332    1222221              1123334455555555566666643    233332211    1


Q ss_pred             HHH-HHHH----------HhcCCHHHHHHHHHHHhhC-------CCCccHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 008105          471 RTL-IWGF----------CRADQVEEAVDLLKEIGKR-------GNKMRNSAYR--LVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       471 ~~l-i~~~----------~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .++ +.-+          -+.|..++|..+++...-.       +.--..+.|.  .|..--...|.++.|.+.--.+.+
T Consensus       970 ~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen  970 GALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred             HHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence            111 1111          1346666676655543211       0011122333  333344567888888776555543


Q ss_pred             -CCCCCCHHHHHHHHHHHHhcCC
Q 008105          531 -SRYKPDDTVFSTIVKKVADDGM  552 (577)
Q Consensus       531 -~~~~p~~~~~~~l~~~~~~~g~  552 (577)
                       ..+-|-..+|+.|.-+-+....
T Consensus      1050 YEd~lpP~eiySllALaaca~ra 1072 (1189)
T KOG2041|consen 1050 YEDFLPPAEIYSLLALAACAVRA 1072 (1189)
T ss_pred             HhhcCCHHHHHHHHHHHHhhhhh
Confidence             2556777777766554444333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=0.0057  Score=54.20  Aligned_cols=186  Identities=15%  Similarity=0.113  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHhhC---C-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105          307 KYDDAVLVINNLLSR---G-MEPNSI-TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRA  381 (577)
Q Consensus       307 ~~~~A~~~~~~m~~~---g-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  381 (577)
                      +.++..+++.++...   | ..++.. .|..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++|
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence            345555555544421   2 333433 23334444556677777777777766553 22222222222234456777777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105          382 INSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN  461 (577)
Q Consensus       382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  461 (577)
                      +++++.+++.+ +.|..++-.-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            77777777765 556666665555666666666676666665554 3567777777777777777777777777777653


Q ss_pred             CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 008105          462 GISPDDITHRTLIWGFCRAD---QVEEAVDLLKEIGKR  496 (577)
Q Consensus       462 g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~  496 (577)
                      . +-++..+..+...+.-.|   +.+-|.++|.+..+.
T Consensus       184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            2 223444555555544333   455677777777664

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=0.00021  Score=69.64  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      .-..++..+...++++.|+++|+++.+..  |+  ....++..+...++-.+|.+++.+..+.. +.+...+..-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34445566666788888888888888764  44  34457777777888888888888877653 446777777777888


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI  285 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  285 (577)
                      +.++++.|+++.+++.+. .|-+-.+|..|...|.+.|+++.|+..+..+..
T Consensus       246 ~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            888888888888888775 244556888888888889999988888887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=0.013  Score=59.14  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          467 DITHRTLIWGFCRADQVEEAVDLLKEIGK-RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       467 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ...|..|.+--...|.++.|+..--.+.+ .++-|....|..+.-+-+....+....+.|-++..
T Consensus      1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence            34455555556667888888776655554 45667788888777666666666666665555543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.01  E-value=0.00034  Score=58.85  Aligned_cols=86  Identities=13%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPD--VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  272 (577)
                      ..+...|++++|...|+.+......++  ......+...+...|++++|+..++....  .......+....+.+.+.|+
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~  133 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGD  133 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCC
Confidence            444444555555555555444321111  11222334444445555555555443211  12223334444445555555


Q ss_pred             HHHHHHHHHH
Q 008105          273 IARAIEVLDD  282 (577)
Q Consensus       273 ~~~A~~~~~~  282 (577)
                      +++|...|+.
T Consensus       134 ~~~A~~~y~~  143 (145)
T PF09976_consen  134 YDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHH
Confidence            5555555543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=9.2e-06  Score=49.19  Aligned_cols=33  Identities=30%  Similarity=0.599  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPD  151 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~  151 (577)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566667777777777777777766666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=1.2e-05  Score=48.66  Aligned_cols=33  Identities=61%  Similarity=1.020  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD  466 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  466 (577)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666666555

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0072  Score=53.59  Aligned_cols=188  Identities=13%  Similarity=0.056  Sum_probs=137.3

Q ss_pred             cCCHHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105          340 RGCWDAVDKILDIMNEA---S-HSPTVF-TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN  414 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  414 (577)
                      ..+.++..+++.++...   | ..++.. .|..+.-+....|+.+.|...++++..+- +-+..+-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            34566777777666532   2 334433 45556667778899999999999988773 333333333333455679999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      +|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+. +..|...|..+...|...|+++.|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999999887 667777777777777788888888888888775 56799999999999999999999999999998


Q ss_pred             hCCCCccHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 008105          495 KRGNKMRNSAYRLVIHGLCKSK---KVDMAIQVLELMISS  531 (577)
Q Consensus       495 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~  531 (577)
                      -.. +.++..+..+.+.+.-.|   +..-|.+++.+.++.
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            643 224555566666655444   677889999998864

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.93  E-value=1.9e-05  Score=47.39  Aligned_cols=33  Identities=39%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP  465 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  465 (577)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355566666666666666666666665555554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.92  E-value=1.7e-05  Score=47.58  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP  150 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~  150 (577)
                      .+||.++++|++.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777766655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.89  E-value=0.00052  Score=66.96  Aligned_cols=124  Identities=19%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008105          190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK  269 (577)
Q Consensus       190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  269 (577)
                      -..|+..+...++++.|.++|+++.+..  |+.  ...+++.+...++-.+|.+++++.+.. .+.+..........+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence            3445566666788999999999988663  543  445777777788888888888888865 35566666666777888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          270 QCGIARAIEVLDDMAIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      .++.+.|+++.+++...  .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus       247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            88888888888888876  344 46888888888888888888888877653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.80  E-value=0.00096  Score=53.82  Aligned_cols=98  Identities=12%  Similarity=-0.013  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PDTITYNMMV  194 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li  194 (577)
                      ++..++..+.+.|++++|.+.|+.+.+....  .....+..+...+.+.|++++|.+.|+.+......  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3455566666667777777777666654321  11234455666666666666666666666554211  1134455555


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      .++.+.|++++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            5666666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.78  E-value=0.00059  Score=55.09  Aligned_cols=93  Identities=15%  Similarity=0.073  Sum_probs=39.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--ccHHHHHHHH
Q 008105          436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK--MRNSAYRLVI  509 (577)
Q Consensus       436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li  509 (577)
                      ..+...+.+.|++++|.+.|+++.+..  |+    ...+..+..++.+.|++++|.+.|+.+......  .....+..+.
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            334444444455555555555444321  11    123333444444444444444444444432111  0122333344


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 008105          510 HGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .++.+.|++++|.+.++++.+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHH
Confidence            444444444444444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.77  E-value=0.00052  Score=67.28  Aligned_cols=125  Identities=16%  Similarity=0.140  Sum_probs=101.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 008105          356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK--NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI  433 (577)
Q Consensus       356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~  433 (577)
                      .+.+.+......+++.+....+.+.+..++.+....  ....-+.|..++++.|.+.|..++++.+++.=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            345567777888888888888888899888888765  222334455689999999999999999999988999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA  480 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  480 (577)
                      ++|.|++.+.+.|++..|.++...|..++...+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999998777667777777666666654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00059  Score=52.10  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            4455666666677777777777666543 2233455556666666666666666666666554 2233455556666666


Q ss_pred             cCChHHHHHHHHHHhh
Q 008105          200 RGQIRSAIALLDEMSV  215 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~  215 (577)
                      .|++++|...++...+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            6666666666655543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.71  E-value=0.00069  Score=51.69  Aligned_cols=93  Identities=13%  Similarity=0.191  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|+...... +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3344455555666666666666665543 2233445555555555666666666666555443 2233455555555555


Q ss_pred             CCChHHHHHHHHHHH
Q 008105          235 NGKFKQAIGFWKDQL  249 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~  249 (577)
                      .|++++|...+....
T Consensus        81 ~~~~~~a~~~~~~~~   95 (100)
T cd00189          81 LGKYEEALEAYEKAL   95 (100)
T ss_pred             HHhHHHHHHHHHHHH
Confidence            555555555555544

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.69  E-value=0.00069  Score=66.40  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105          321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV  398 (577)
Q Consensus       321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  398 (577)
                      .+...+......+++.+....+.+.+..++.......  ...-..|..+++..|.+.|..+.++.+++.=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            4445677788889999999999999999998887652  22233456799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105          399 TYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK  445 (577)
Q Consensus       399 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  445 (577)
                      +++.+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999988887777778877777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.68  E-value=4.8e-05  Score=44.46  Aligned_cols=29  Identities=28%  Similarity=0.626  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRN  147 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~  147 (577)
                      +||.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56777777777777777777777776655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.63  E-value=0.00012  Score=54.98  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=34.2

Q ss_pred             cCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008105          130 RGKLTDASKLIDIMARRNQI-PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIA  208 (577)
Q Consensus       130 ~g~~~~A~~l~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  208 (577)
                      .|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|.++++. .+.+. .+....-.+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            34555555555555554321 1233333345555555555555555544 21111 111222233444555555555555


Q ss_pred             HHH
Q 008105          209 LLD  211 (577)
Q Consensus       209 ~~~  211 (577)
                      .|+
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.62  E-value=0.00093  Score=51.21  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQ-IPDFHFCINLIRGLIRID--------RIEKASKVLQIMVMSGGVPDTITY  190 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~g~~~~~~~~  190 (577)
                      -..-|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++..        ++-+++.+++.|+..+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34556666667888888889988888888 888888888888877542        234456666667666667777777


Q ss_pred             HHHHHHHHh
Q 008105          191 NMMVGGLCK  199 (577)
Q Consensus       191 ~~li~~~~~  199 (577)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            766665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.62  E-value=7.9e-05  Score=43.52  Aligned_cols=29  Identities=45%  Similarity=0.790  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENG  462 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  462 (577)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.60  E-value=0.00018  Score=53.92  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             cCCHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 008105          480 ADQVEEAVDLLKEIGKRGN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       480 ~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  557 (577)
                      .|+++.|+.+++++.+... .++...+..+..++.+.|++++|..++++ .  ...|+ ......+..++.+.|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            3455556666655554322 11333344455556666666666666655 2  11222 233334455566666666666


Q ss_pred             HHHHH
Q 008105          558 KLWQK  562 (577)
Q Consensus       558 ~~~~~  562 (577)
                      +.+++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            55543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.59  E-value=0.052  Score=49.93  Aligned_cols=81  Identities=14%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFC---INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      ++..+-.....+.+.|++++|.+.|+.+....+.+ ...-   ..++.++.+.+++++|...+++..+..+.....-|..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            44444456666778899999999999988864332 2222   3356777888999999999988888754433334444


Q ss_pred             HHHHH
Q 008105          193 MVGGL  197 (577)
Q Consensus       193 li~~~  197 (577)
                      .+.+.
T Consensus       110 Y~~g~  114 (243)
T PRK10866        110 YMRGL  114 (243)
T ss_pred             HHHHH
Confidence            44443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.59  E-value=0.003  Score=54.89  Aligned_cols=94  Identities=11%  Similarity=-0.033  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ....+..+...+...|++++|...|++..+....++  ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            345678888888999999999999998887643332  3577778888889999999999998888764 3356667777


Q ss_pred             HHHHHhcCChHHHHHHH
Q 008105          194 VGGLCKRGQIRSAIALL  210 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~  210 (577)
                      ...+...|+...+..-+
T Consensus       113 g~~~~~~g~~~~a~~~~  129 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQ  129 (172)
T ss_pred             HHHHHHcCChHhHhhCH
Confidence            77777777755544433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.58  E-value=0.084  Score=51.06  Aligned_cols=259  Identities=11%  Similarity=0.111  Sum_probs=132.5

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--
Q 008105          126 NFCSRGKLTDASKLIDIMARRNQIPDFH------FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL--  197 (577)
Q Consensus       126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--  197 (577)
                      .+-+.+++.+|.++|.++.+.- ..+..      ..+.++++|.. .+.+.....+....+..  | ...|-.+..++  
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~   89 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA   89 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence            3467888999999998887652 22222      23345666653 34455555555554432  2 22333343332  


Q ss_pred             HhcCChHHHHHHHHHHhhC--CCCC------------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHH
Q 008105          198 CKRGQIRSAIALLDEMSVS--GCEP------------DVITYNTILRTMFDNGKFKQAIGFWKDQLRKG----CPPYLIT  259 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~--g~~~------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~  259 (577)
                      -+.+.+++|.+.+..-...  +..+            |...=+..+.++...|++.++..+++++...=    ..-+..+
T Consensus        90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~  169 (549)
T PF07079_consen   90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM  169 (549)
T ss_pred             HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence            3678888888877665543  2111            22223456677888999999998888876643    3467888


Q ss_pred             HHHHHHHHHHcC--------C-------HHHHHHHHHHHHHc------CCCCCHhhHHHHHHHHHhc--CCHHHHHHHHH
Q 008105          260 YTILIEQVCKQC--------G-------IARAIEVLDDMAIE------GCSPDIVTYNSLVNFSCKQ--GKYDDAVLVIN  316 (577)
Q Consensus       260 ~~~l~~~~~~~g--------~-------~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~  316 (577)
                      |+.++-.+.+.=        .       ++.+.-..++|...      .+.|.......++....-.  .+..--+++++
T Consensus       170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~  249 (549)
T PF07079_consen  170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE  249 (549)
T ss_pred             HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence            887555444320        0       12222222222221      1222222222222221111  11122233333


Q ss_pred             HHhhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105          317 NLLSRGMEPNSI-TYNTLLHSLGSRGCWDAVDKILDIMNEASHS----PTVFTYNILINGLCKYGLVDRAINSFNQMVSK  391 (577)
Q Consensus       317 ~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  391 (577)
                      .....-+.|+.. ....+...+.+  +.+++..+.+.+....+.    .-..++..++....+.++..+|...+.-+...
T Consensus       250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l  327 (549)
T PF07079_consen  250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL  327 (549)
T ss_pred             HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence            333334455533 23334444433  555555555554433211    12346777777778888888887777665543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.58  E-value=0.14  Score=53.71  Aligned_cols=192  Identities=11%  Similarity=0.074  Sum_probs=114.5

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105          127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA  206 (577)
Q Consensus       127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  206 (577)
                      +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..++++....  .|+......+..+|.+.+++.+-
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q  129 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ  129 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence            36778888888888776655433 7777888888888888888888888888765  45566667777778887776554


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhC-CC---------hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 008105          207 IALLDEMSVSGCEPDVITYNTILRTMFDN-GK---------FKQAIGFWKDQLRKG-CPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~~---------~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .+.=-++-+. ++.+...+=++++.+.+. ..         ..-|.+.++.+.+.+ ---+..-...-...+...|++++
T Consensus       130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e  208 (932)
T KOG2053|consen  130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE  208 (932)
T ss_pred             HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence            4333333322 123333333344433331 11         223455555555543 11112222222334556778888


Q ss_pred             HHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          276 AIEVLD-DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG  322 (577)
Q Consensus       276 A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  322 (577)
                      |++++. .....-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus       209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            888873 33333223333444556677777888888888888877775

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.58  E-value=0.0023  Score=60.41  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR-IDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      .+|..+++...+.+..+.|+.+|.++.+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356666666666666666666666665432 2233333333333222 34455566666666654 24455666666666


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDV----ITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      +.+.|+.+.|..+|++....  -+..    ..|...+..=.+.|+++.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666543  2222    3555555555555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.53  E-value=0.0025  Score=62.45  Aligned_cols=92  Identities=10%  Similarity=-0.010  Sum_probs=63.7

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ  202 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  202 (577)
                      ....+...|++++|++.|+++++... .+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            34556677777777777777777643 356666667777777777777777777777664 3355666667777777777


Q ss_pred             hHHHHHHHHHHhhC
Q 008105          203 IRSAIALLDEMSVS  216 (577)
Q Consensus       203 ~~~A~~~~~~~~~~  216 (577)
                      +++|...|++..+.
T Consensus        86 ~~eA~~~~~~al~l   99 (356)
T PLN03088         86 YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777777665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.52  E-value=0.0037  Score=58.94  Aligned_cols=130  Identities=7%  Similarity=-0.007  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK-KGCMEKAMVLYGQMMENGISPDDITHRTLIWG  476 (577)
Q Consensus       398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  476 (577)
                      .+|..++...-+.+..+.|..+|.+..+.+ ..+...|-.....-.+ .++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            356666666666666777777777776443 2233334333333222 45555577777776654 34556666677777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          477 FCRADQVEEAVDLLKEIGKRGNKMR---NSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       477 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      +.+.++.+.|..+|++.... +.++   ...|...+..-.+.|+++.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777776653 2222   23666677666677777777777776664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.49  E-value=0.0023  Score=49.09  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=36.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105          404 LGALCKEGMLNEALQLLHLLNGSSC-SPCLITYNTLIDGLAKKG--------CMEKAMVLYGQMMENGISPDDITHRTLI  474 (577)
Q Consensus       404 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li  474 (577)
                      |..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++..        ++-+.+.+|+.|+..+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3333444555555555555555555 455555555555544322        1223444555555555555555555555


Q ss_pred             HHH
Q 008105          475 WGF  477 (577)
Q Consensus       475 ~~~  477 (577)
                      ..+
T Consensus       112 ~~L  114 (120)
T PF08579_consen  112 GSL  114 (120)
T ss_pred             HHH
Confidence            444

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.48  E-value=0.0027  Score=52.57  Aligned_cols=96  Identities=9%  Similarity=0.021  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ...-.+...+...|++++|.++|+......+. +..-|..|..++-..|++++|+..|....... +-|+..+-.+..++
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~  113 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            34445566667777777777777776665432 55556666666666677777777777776665 34556666666677


Q ss_pred             HhcCChHHHHHHHHHHhh
Q 008105          198 CKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~  215 (577)
                      ...|+.+.|.+.|+....
T Consensus       114 L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        114 LACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            777777777777766554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.46  E-value=0.035  Score=52.59  Aligned_cols=28  Identities=14%  Similarity=0.052  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMAR  145 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~  145 (577)
                      ..|+.....|...|++++|.+.|.+..+
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~   63 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAAD   63 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            4566666777777777777777666543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.46  E-value=0.0031  Score=52.25  Aligned_cols=97  Identities=13%  Similarity=-0.080  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG  511 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  511 (577)
                      ....-.+..-+...|++++|..+|+-+.... +-+..-|..|..++-..|++++|+..|......++ -|+..+-.+..+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            4444555556667788888888888776643 23455667777777777888888888887776553 355666667777


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 008105          512 LCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~  530 (577)
                      +...|+.+.|.+.|+..+.
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            7788888888888877764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.46  E-value=0.0072  Score=48.24  Aligned_cols=108  Identities=16%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGL  197 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~  197 (577)
                      .+..++-..|+.++|+.+|++....|....  ...+..+...+...|++++|..++++.....+.+  +......+..++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            455677778888888888888888776543  3355567777888888888888888887653210  112222233456


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      ...|+.++|.+.+-....    ++...|.--|..|.
T Consensus        86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            677888888887766552    33335555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.45  E-value=0.0049  Score=53.36  Aligned_cols=94  Identities=16%  Similarity=-0.082  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      ...|..+...+...|++++|...|++.......+  ...++..+...+.+.|++++|+..++...... +.....+..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            4667778888888888888888888887653332  23467777888888888888888888887653 33345566666


Q ss_pred             HHHH-------hcCChHHHHHHHH
Q 008105          195 GGLC-------KRGQIRSAIALLD  211 (577)
Q Consensus       195 ~~~~-------~~g~~~~A~~~~~  211 (577)
                      ..+.       +.|+++.|...++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHH
Confidence            6666       5556554444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.44  E-value=0.0073  Score=52.45  Aligned_cols=92  Identities=10%  Similarity=-0.019  Sum_probs=68.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD--TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            344566777788888999999999999887643332  4577888888899999999999998888753 3356667777


Q ss_pred             HHHHHhCCChHHHHH
Q 008105          229 LRTMFDNGKFKQAIG  243 (577)
Q Consensus       229 i~~~~~~~~~~~A~~  243 (577)
                      ...+...|+...+..
T Consensus       113 g~~~~~~g~~~~a~~  127 (172)
T PRK02603        113 AVIYHKRGEKAEEAG  127 (172)
T ss_pred             HHHHHHcCChHhHhh
Confidence            777777777555443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.44  E-value=0.047  Score=46.14  Aligned_cols=155  Identities=14%  Similarity=0.041  Sum_probs=94.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCM  448 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  448 (577)
                      ..+..+.=+++....-..+-..  ..|+...-..|..++...|+..+|...|++....-...|......+.++....+++
T Consensus        63 ~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          63 LMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             HHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            3344444444444333333222  35666666677777777777777777777776655566677777777777777777


Q ss_pred             HHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105          449 EKAMVLYGQMMENG---ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVL  525 (577)
Q Consensus       449 ~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  525 (577)
                      ..|...++++.+..   -.||  +...+...+...|++++|..-|+.....-  |+...-......+.+.|+.++|..-+
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence            77777777776642   1222  34455666777777777777777776642  33333333344566677766666555


Q ss_pred             HHHH
Q 008105          526 ELMI  529 (577)
Q Consensus       526 ~~m~  529 (577)
                      ....
T Consensus       217 ~~v~  220 (251)
T COG4700         217 VAVV  220 (251)
T ss_pred             HHHH
Confidence            4444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.38  E-value=0.015  Score=59.76  Aligned_cols=65  Identities=14%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          503 SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      ..|..+.-.....|++++|...++++.+.  .|+...|..+.+.+...|+.++|.+.+++....++.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            33444433333445555555555555533  244445555555555555555555555555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.37  E-value=0.0047  Score=53.48  Aligned_cols=81  Identities=6%  Similarity=-0.201  Sum_probs=48.7

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      ...+..+...+...|++++|...|+........+  ...+|..+...|...|++++|.+.+++..... +....++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            3445556666667777777777777776553222  23456667777777777777777777766542 22344444444


Q ss_pred             HHHH
Q 008105          230 RTMF  233 (577)
Q Consensus       230 ~~~~  233 (577)
                      ..+.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            4444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.35  E-value=0.0068  Score=59.42  Aligned_cols=91  Identities=10%  Similarity=-0.019  Sum_probs=70.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105          159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF  238 (577)
Q Consensus       159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  238 (577)
                      ...+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence            345567788888888888888775 3466777777888888888888888888887764 44677777788888888888


Q ss_pred             HHHHHHHHHHHHC
Q 008105          239 KQAIGFWKDQLRK  251 (577)
Q Consensus       239 ~~A~~~~~~~~~~  251 (577)
                      ++|+..|++.++.
T Consensus        87 ~eA~~~~~~al~l   99 (356)
T PLN03088         87 QTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887765

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.16  Score=48.63  Aligned_cols=89  Identities=16%  Similarity=0.081  Sum_probs=48.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 008105          371 GLCKYGLVDRAINSFNQMVSK---NCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGC  447 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  447 (577)
                      -..+.|++..|.+.|.+.+..   +..|+...|.....+..+.|+.++|+.--+.....+ +.-...|..-..++...++
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence            345567777777777766654   234445555555556666677777766665555432 0001112222233444566


Q ss_pred             HHHHHHHHHHHHH
Q 008105          448 MEKAMVLYGQMME  460 (577)
Q Consensus       448 ~~~A~~~~~~m~~  460 (577)
                      |++|.+-|+...+
T Consensus       337 ~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.33  E-value=0.06  Score=45.52  Aligned_cols=134  Identities=17%  Similarity=0.063  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHHHHH
Q 008105          359 SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPCLITYNT  437 (577)
Q Consensus       359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~  437 (577)
                      .|++..--.|..+....|+..+|...|++...--...|......+.++....+++.+|...++.+-+... .-+..+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            4666666667777777777777777777776654555666667777777777777777777776655431 111223345


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          438 LIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       438 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      +.+.+...|.+..|+.-|+.....  -|+...-......+.+.|+.+++..-+..+.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            566677777777777777777664  3554444444445556666666555444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.31  E-value=0.099  Score=48.07  Aligned_cols=57  Identities=11%  Similarity=0.070  Sum_probs=37.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          508 VIHGLCKSKKVDMAIQVLELMISS--RYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       508 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      +.+-|.+.|.+..|..-++.+++.  +.+........+..+|...|..++|......+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            555577777777777777777752  222334555666777777777777777666553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.30  E-value=0.016  Score=59.39  Aligned_cols=61  Identities=11%  Similarity=-0.040  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          467 DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       467 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      ...|..+.......|++++|...+++....+  |+...|..+...+...|+.++|.+.+++..
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445544444444566666666666655543  345555666666666666666666666655

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.27  E-value=0.0082  Score=52.28  Aligned_cols=104  Identities=21%  Similarity=0.239  Sum_probs=58.7

Q ss_pred             CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105          360 PTVFTYNILINGLCKY-----GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT  434 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  434 (577)
                      .+..+|..+++.|.+.     |..+=....++.|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+           
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----------  111 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----------  111 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence            4556666666666543     4455555555666666666666666666655543 2211 00111111           


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ  482 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  482 (577)
                          ..-|  -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus       112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                1111  12345677888888888888888888888888766554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.25  E-value=0.01  Score=51.77  Aligned_cols=105  Identities=18%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105          429 SPCLITYNTLIDGLAK-----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS  503 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  503 (577)
                      ..+..+|..+++.|.+     .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+-               |.. 
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-  106 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-  106 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence            3466777777777763     35566666666777777777777777777776543 2111               110 


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM  552 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  552 (577)
                      .+..+..-|  -.+.+-|++++++|...|+-||.+++..|++.+++.+.
T Consensus       107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            000000000  12345566777777777777777777777777755553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.22  E-value=0.21  Score=47.76  Aligned_cols=109  Identities=16%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          329 TYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC  408 (577)
Q Consensus       329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  408 (577)
                      +.+..+.-+...|+...|.++-.+..    -|+..-|-..+.+++..+++++-..+-..      +-++.-|...+.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            33444555556677777766655442    26777777777777777777766554321      224566777777777


Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQ  457 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  457 (577)
                      +.|...+|..+...+          .+..-+..|.+.|++.+|.+.--+
T Consensus       249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence            777777777766652          124456667777777777655443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.22  E-value=0.0014  Score=46.70  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=20.3

Q ss_pred             cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105          130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  180 (577)
                      .|++++|+++|+++....+. +...+..+..+|.+.|++++|.++++.+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444443211 333333444444444444444444444443

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.22  E-value=0.0016  Score=46.52  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 008105          502 NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG-MTEEAYKLWQKLIEWK  567 (577)
Q Consensus       502 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  567 (577)
                      ...|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.++.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            4456666666667777777777777766532 224556666666677776 5677777777666644

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.11  Score=49.79  Aligned_cols=156  Identities=13%  Similarity=0.015  Sum_probs=89.7

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHhhCCCCCCHHHH------------
Q 008105          370 NGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG--ALCKEGMLNEALQLLHLLNGSSCSPCLITY------------  435 (577)
Q Consensus       370 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------------  435 (577)
                      ..+.-.|+.++|...-...++.+ ..+.  +...++  ++--.++.+.|...|++....+  |+...-            
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence            34455677777777766666553 2222  222333  2334567777777777766653  332221            


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105          436 -NTLIDGLAKKGCMEKAMVLYGQMMEN---GISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHG  511 (577)
Q Consensus       436 -~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  511 (577)
                       ..=..-..+.|.+.+|.+.|.+.+..   ++.|+...|.....+..+.|+.++|+.--++....+.. -...|..-..+
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c  330 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC  330 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence             11123345677888888888887752   24455556666666677778888888777777653210 11122222334


Q ss_pred             HHhcCChHHHHHHHHHHHHC
Q 008105          512 LCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~  531 (577)
                      +...++|++|.+-+++..+.
T Consensus       331 ~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            44567777777777777653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.16  E-value=0.0015  Score=46.52  Aligned_cols=65  Identities=20%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      +.+.|++++|+++|+.+.... +-+...+..+..+|.+.|++++|.++++++...  .|+...|..++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            357899999999999999886 447888889999999999999999999999877  57755555544

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.15  E-value=0.0054  Score=55.90  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=57.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 008105          162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQA  241 (577)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A  241 (577)
                      +.+.++|++|+..|.+.++.. +.|.+.|..-..+|++.|.++.|++-.+.....+ +....+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence            455566666666666666554 3455555556666666666666666666655443 22345566666666666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHH
Q 008105          242 IGFWKDQLRKGCPPYLITYTILI  264 (577)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~  264 (577)
                      ++.|++.++  +.|+-.+|-.=+
T Consensus       169 ~~aykKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYKSNL  189 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHHHHH
Confidence            666666554  344444444333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.12  E-value=0.026  Score=53.46  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cc
Q 008105          434 TYNTLIDGLAKK-GCMEKAMVLYGQMME----NGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK-----MR  501 (577)
Q Consensus       434 ~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~  501 (577)
                      .+..+...|-.. |++++|.+.|++..+    .| .+.  ..++..+...+.+.|++++|.++|+++......     .+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            445556666677 888999988888764    22 111  335667778888899999999999888764322     12


Q ss_pred             HH-HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 008105          502 NS-AYRLVIHGLCKSKKVDMAIQVLELMISS--RYKPDD--TVFSTIVKKVADDGMTEEAYKL  559 (577)
Q Consensus       502 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~--~~~~~l~~~~~~~g~~~~A~~~  559 (577)
                      .. .|...+-++...|++-.|.+.+++....  ++..+.  .....|+.++ +.|+.+.-...
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~a  256 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEA  256 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHH
Confidence            21 2333344566678899999999888743  333332  2344455544 34444443333

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.0088  Score=54.55  Aligned_cols=98  Identities=17%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 008105          405 GALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQV  483 (577)
Q Consensus       405 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  483 (577)
                      .-..+.+++++|+..|.+.++.. +.|.+-|..=..+|.+.|.++.|++=.+..+..  .|. ..+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence            34566778888888888887765 556777777778888888888888777777663  343 45777888888888888


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHH
Q 008105          484 EEAVDLLKEIGKRGNKMRNSAYRL  507 (577)
Q Consensus       484 ~~A~~~~~~m~~~~~~~~~~~~~~  507 (577)
                      ++|.+.|++..+  +.|+..+|..
T Consensus       166 ~~A~~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  166 EEAIEAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHHHHHHhhhc--cCCCcHHHHH
Confidence            888888887776  3566665544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.09  E-value=0.0029  Score=44.56  Aligned_cols=59  Identities=15%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      ...+...|++++|.+.|++.++.. +-+...+..+..++.+.|++++|..+++++++..|
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            445666677777777777766532 22455666666666777777777777776666444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.05  E-value=0.0029  Score=45.20  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVM  180 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~  180 (577)
                      +..+|..+...+.+.|++++|+..|++.++.++ .+...|..+..++.+.| ++++|++.++..++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345666666777777777777777777666542 25556666666666666 56666666666654

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.05  E-value=0.0027  Score=44.70  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=32.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      ...+.+.|++++|++.|+++++.. +-+...+..+..++.+.|++++|...|+++++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445566666666666666666554 225555555666666666666666666665543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.05  E-value=0.34  Score=46.96  Aligned_cols=405  Identities=10%  Similarity=0.066  Sum_probs=198.1

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      +.|..+|-.||+-|...|..++-++++++|..- ++--..+|...+.+=....++.....+|.+.+...  .+...|...
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY  115 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY  115 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence            457889999999999999999999999999764 44456778888888888899999999999998763  457777777


Q ss_pred             HHHHHhcCCh------HHHHHHHHHHh-hCCCCC-CHHHHHHHHHHHH---------hCCChHHHHHHHHHHHHCCCCCC
Q 008105          194 VGGLCKRGQI------RSAIALLDEMS-VSGCEP-DVITYNTILRTMF---------DNGKFKQAIGFWKDQLRKGCPPY  256 (577)
Q Consensus       194 i~~~~~~g~~------~~A~~~~~~~~-~~g~~~-~~~~~~~li~~~~---------~~~~~~~A~~~~~~~~~~~~~~~  256 (577)
                      ++--.+....      -...+.|+-.. ..++.| ....|+..+..+-         ++.+.+...+.+.+++...+..-
T Consensus       116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl  195 (660)
T COG5107         116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL  195 (660)
T ss_pred             HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence            7644333211      11223333332 234444 3334554443322         22334455566666654311111


Q ss_pred             HHHHH------HHHHHH-HH--cC----CHHHHHHHHHHHHH--cCCC----CCHhhHH-----------HHHHHHHhc-
Q 008105          257 LITYT------ILIEQV-CK--QC----GIARAIEVLDDMAI--EGCS----PDIVTYN-----------SLVNFSCKQ-  305 (577)
Q Consensus       257 ~~~~~------~l~~~~-~~--~g----~~~~A~~~~~~~~~--~~~~----~~~~~~~-----------~li~~~~~~-  305 (577)
                      ...|+      .=+... ++  .|    -+-.|.+.++++..  +|..    .+..++|           ..|..-... 
T Consensus       196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~  275 (660)
T COG5107         196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG  275 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence            11111      111100 00  01    13345555555432  2211    1112222           222211111 


Q ss_pred             ----CC-HHH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          306 ----GK-YDD-AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       306 ----g~-~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                          |+ ..+ .--++++.... +......|----..+...++-+.|.+....-.+.  .|+..  -.+-..|.-.++.+
T Consensus       276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~--~~lse~yel~nd~e  350 (660)
T COG5107         276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLT--MFLSEYYELVNDEE  350 (660)
T ss_pred             cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchh--eeHHHHHhhcccHH
Confidence                11 111 11112222211 0112223333333344556666666555443322  12211  11112222223333


Q ss_pred             HHHHHHHHHHHC--------------C---------------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CC
Q 008105          380 RAINSFNQMVSK--------------N---------------CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS-CS  429 (577)
Q Consensus       380 ~A~~~~~~m~~~--------------~---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~  429 (577)
                      .....|+...+.              +               ...-..+|...++.-.+..-++.|..+|-+..+.+ +.
T Consensus       351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~  430 (660)
T COG5107         351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVG  430 (660)
T ss_pred             HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence            333333322210              0               00112345555555556666666667776666665 55


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--cHHHHH
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDIT-HRTLIWGFCRADQVEEAVDLLKEIGKRGNKM--RNSAYR  506 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~  506 (577)
                      +++..+++++..++. |+..-|..+|+--...  -||... -+-.+.-+..-++-+.|..+|+....+ +..  -...|.
T Consensus       431 h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~  506 (660)
T COG5107         431 HHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYD  506 (660)
T ss_pred             cceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHH
Confidence            666666666665543 4556666666654432  133332 234445555666666666666644321 111  134566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH
Q 008105          507 LVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       507 ~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .+|+--..-|+...+..+=++|..
T Consensus       507 kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         507 KMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHHHHHhhcchHHHHhHHHHHHH
Confidence            666666666666666666666553

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.04  E-value=0.0066  Score=57.46  Aligned_cols=265  Identities=13%  Similarity=0.050  Sum_probs=159.0

Q ss_pred             HHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHHHHHHHHH
Q 008105          125 QNFCSRGKLTDASKLIDIMARRNQIPDF----HFCINLIRGLIRIDRIEKASKVLQIMVM----SGG-VPDTITYNMMVG  195 (577)
Q Consensus       125 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~-~~~~~~~~~li~  195 (577)
                      .-+|+.|+....+.+|+..++.|.. |.    .+|..|.++|...+++++|++++..=+.    .|- .-...+-..|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            5679999999999999999998754 33    3566788888889999999987643211    010 012223334555


Q ss_pred             HHHhcCChHHHHHHHHHH----hhCCC-CCCHHHHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH
Q 008105          196 GLCKRGQIRSAIALLDEM----SVSGC-EPDVITYNTILRTMFDNGK--------------------FKQAIGFWKDQLR  250 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~----~~~g~-~~~~~~~~~li~~~~~~~~--------------------~~~A~~~~~~~~~  250 (577)
                      .+--.|.+++|.....+-    .+.|- ......+..+...|...|+                    ++.|.++|.+-++
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            555667777776543322    22221 1123344445666654432                    2344444443222


Q ss_pred             C----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          251 K----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAI----EGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       251 ~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      .    | --.-...|..|...|.-.|+++.|+...+.-..    -|- ......+..+.+++.-.|+++.|.+.++....
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            1    1 001123455555666667888888866543221    121 11235677888889999999999988876543


Q ss_pred             C----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          321 R----GM-EPNSITYNTLLHSLGSRGCWDAVDKILDIMNE----AS-HSPTVFTYNILINGLCKYGLVDRAINSFNQMVS  390 (577)
Q Consensus       321 ~----g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  390 (577)
                      .    |- ........+|.+.|.-..+++.|..++.+-..    .+ ..-....+-+|..+|...|..++|+.+.+.-.+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            2    21 22344566677777777788888877754321    11 112456777889999999999999887766543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.04  E-value=0.04  Score=50.63  Aligned_cols=101  Identities=10%  Similarity=0.063  Sum_probs=57.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          184 VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN---GKFKQAIGFWKDQLRKGCPPYLITY  260 (577)
Q Consensus       184 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~  260 (577)
                      +-|...|-.|...|...|++..|...|.+..+.. .++...+..+..++...   ....++.++|++++... +-|+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            4456666666666666666666666666665543 34555555555444332   23445666666666543 3455555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      ..|...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            55555666666666666666666654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.01  E-value=0.057  Score=43.15  Aligned_cols=51  Identities=18%  Similarity=0.288  Sum_probs=20.7

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPD--VITYNTILRTMFDNGKFKQAIGFWKDQL  249 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~  249 (577)
                      ..|+.++|..+|++....|....  ...+-.+...+...|++++|..++++..
T Consensus        13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen   13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444444444444432221  1223333344444444444444444443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.084  Score=47.23  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 008105          189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL-----  263 (577)
Q Consensus       189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----  263 (577)
                      ..+.++..+.-.|.+.-...++.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+.+.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344445555555555555555555555443445555555555555556666666555544433222233222222     


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          264 IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       264 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ...|.-.+++..|...++++...+ +.|+...|.-.-+..-.|+..+|++.++.|+..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            223444555666666666665543 223333333333333345666666666666655

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.056  Score=49.72  Aligned_cols=101  Identities=20%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHhhH
Q 008105          219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC---GIARAIEVLDDMAIEGCSPDIVTY  295 (577)
Q Consensus       219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~  295 (577)
                      +-|...|-.|...|...|+++.|..-|.+..+. .++|...+..+..++....   ...++.++|+++.+.+ +-|+.+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            456777777777777777777777777776665 2455555555555444332   2556677777777653 2345555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          296 NSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       296 ~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ..|...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            56666677777777777777777765

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.94  E-value=0.31  Score=49.35  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      .|-++.+.+=+..|...|.+++|.++--    .|+.  ..-|..|...-...=+++-|++                    
T Consensus       553 ~~~evp~~~~m~q~Ieag~f~ea~~iac----lgVv--~~DW~~LA~~ALeAL~f~~ARk--------------------  606 (1081)
T KOG1538|consen  553 SAVEVPQSAPMYQYIERGLFKEAYQIAC----LGVT--DTDWRELAMEALEALDFETARK--------------------  606 (1081)
T ss_pred             ecccccccccchhhhhccchhhhhcccc----ccee--cchHHHHHHHHHhhhhhHHHHH--------------------
Confidence            4555666777788899999999876532    1222  1223333322222223333333                    


Q ss_pred             HHHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 008105          194 VGGLCKRGQ--IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKD  247 (577)
Q Consensus       194 i~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  247 (577)
                        +|.+-.+  +-+...-++++.++|-.|+...   +...++-.|.+.+|.++|.+
T Consensus       607 --AY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  607 --AYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             --HHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence              3333222  2222333556666665566543   33445556777777766654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.67  Score=48.02  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=71.6

Q ss_pred             CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCC
Q 008105          181 SGGVPDTITYN-----MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK--FKQAIGFWKDQLRKGC  253 (577)
Q Consensus       181 ~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~  253 (577)
                      .|++.+..-|.     .+|+-+...+.+..|.++-..+...-.. ....|......+.+..+  -+++++..++-++.. 
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-  503 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-  503 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence            35555555443     3455666667777777776666522111 14556666666655532  122333222222221 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS----PDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      .....+|..+.......|+.+-|..+++.=...+-.    .+..-+...+.-+.+.|+.+-...++-.+..
T Consensus       504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~  574 (829)
T KOG2280|consen  504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN  574 (829)
T ss_pred             CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            134556666666666777777777766543322110    1222344455556667777766666666554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.035  Score=49.60  Aligned_cols=165  Identities=12%  Similarity=0.068  Sum_probs=105.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ++.+-.....+..+++++.=..       ...+.+++.+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.
T Consensus       156 i~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~  228 (366)
T KOG2796|consen  156 LANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI  228 (366)
T ss_pred             HHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence            3444444444555666654332       345667777777788888888888888777677777778888888888888


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNT-----ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIE  278 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  278 (577)
                      +.|...|++..+..-..|..+.+.     ....|.-.+++.+|...+.++.... +.|+...|.-.-...-.|+..+|.+
T Consensus       229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence            888888887654422333333333     3334555677888888887777653 4455555544444555688888888


Q ss_pred             HHHHHHHcCCCCCHhhHHHH
Q 008105          279 VLDDMAIEGCSPDIVTYNSL  298 (577)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~l  298 (577)
                      .++.|...  .|...+-+++
T Consensus       308 ~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  308 QLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             HHHHHhcc--CCccchhhhH
Confidence            88888876  4444444433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.87  E-value=0.44  Score=45.39  Aligned_cols=291  Identities=15%  Similarity=0.062  Sum_probs=150.8

Q ss_pred             HHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCCHHHHH----
Q 008105          155 CINLIRGLIR--IDRIEKASKVLQIMVMSGGVPDTITYNMMVGG--LCKRGQIRSAIALLDEMSVSGCEPDVITYN----  226 (577)
Q Consensus       155 ~~~li~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----  226 (577)
                      |..|-.+++.  .|+-..|+++-.+..+. +..|....-.++.+  -.-.|+++.|.+-|+.|..     |+.+-.    
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR  158 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR  158 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence            4444444432  35556666655544321 12233333333332  2235777777777777763     222222    


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHHH
Q 008105          227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG-CSPDIVT--YNSLVNFSC  303 (577)
Q Consensus       227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~li~~~~  303 (577)
                      .|.-.--+.|..+.|.++-++....- +.-...+.+.+...|..|+|+.|+++.+.-.... +.++..-  -..|+.+-.
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA  237 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA  237 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence            22222234666777766666655432 3334556666777777777777777776554432 2333211  112222211


Q ss_pred             ---hcCCHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          304 ---KQGKYDDAVLVINNLLSRGMEPNSIT-YNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       304 ---~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                         -..+...|...-.+..+.  .||..- -..-..++.+.|+..++-++++.+-+....|+  .+..  -.+.+.|+  
T Consensus       238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~l--Y~~ar~gd--  309 (531)
T COG3898         238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALL--YVRARSGD--  309 (531)
T ss_pred             HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHH--HHHhcCCC--
Confidence               122345555554444443  445432 22334567777888888888887776654343  2222  12334444  


Q ss_pred             HHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHH
Q 008105          380 RAINSFNQMVSK-NC-QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA-KKGCMEKAMVLYG  456 (577)
Q Consensus       380 ~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~  456 (577)
                      .++.-+++.... .+ +.+..+...+..+-...|++..|..--+.....  .|....|..|.+.-. ..|+-.++...+.
T Consensus       310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence            233333322211 11 334556666667777777877777665555443  566666666666544 3488888888888


Q ss_pred             HHHHCC
Q 008105          457 QMMENG  462 (577)
Q Consensus       457 ~m~~~g  462 (577)
                      +..+.-
T Consensus       388 qav~AP  393 (531)
T COG3898         388 QAVKAP  393 (531)
T ss_pred             HHhcCC
Confidence            777653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.86  E-value=0.027  Score=52.21  Aligned_cols=94  Identities=17%  Similarity=0.089  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CccHHHHHHH
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD----ITHRTLIWGFCRADQVEEAVDLLKEIGKRGN--KMRNSAYRLV  508 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l  508 (577)
                      |...+..+.+.|++++|...|+.+++.-  |+.    ..+..+...|...|++++|...|+.+.+.-.  ......+..+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            4444443445566666666666666532  332    3455555666666666666666666654211  1123334444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ...+...|+.++|.+++++.++
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            4555556666666666666654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.83  E-value=0.19  Score=44.89  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=27.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 008105          508 VIHGLCKSKKVDMAIQVLELMISSRYKPD----DTVFSTIVKKVADDGMTEEA  556 (577)
Q Consensus       508 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A  556 (577)
                      +.+.|.+.|.+..|..-++.+++.  -|+    ......++.++.+.|..+.|
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            455667777777777777777653  222    23445566677777776644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.82  E-value=0.11  Score=52.53  Aligned_cols=88  Identities=17%  Similarity=0.089  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH--------
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS--------  503 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------  503 (577)
                      ..+...+...+.+...+.-|.++|..|-+.         ..+++.....+++.+|..+-++..+.  .|+..        
T Consensus       747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA  815 (1081)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence            344444444455555666666666666431         23455556666777776666655442  22211        


Q ss_pred             ---HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          504 ---AYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       504 ---~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                         -|...-.+|-+.|+-.+|.++++++..
T Consensus       816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence               122233456667777777777777653

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.77  E-value=0.37  Score=43.05  Aligned_cols=65  Identities=12%  Similarity=0.054  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSG  182 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g  182 (577)
                      ...-.....+.+.|++.+|.+.|+.+....+..  -..+...++.++.+.|+++.|...+++.++..
T Consensus         6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            334455666777888888888888887763221  22334456677778888888888888877764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.73  E-value=0.035  Score=51.46  Aligned_cols=99  Identities=9%  Similarity=-0.045  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGG--VPDTITYNMM  193 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l  193 (577)
                      ..|+.-+..+.+.|++++|...|+.+++..+...  ..++..+...|...|++++|...|+.+.+..+  +.....+-.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            3445545445666777777777777776532211  23555566666777777777777777765421  1123333344


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      ...+...|+.++|.++|+++.+.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            55555666667776666666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.73  E-value=0.64  Score=45.20  Aligned_cols=416  Identities=10%  Similarity=0.040  Sum_probs=231.2

Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105          137 SKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       137 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      +++-+++.+.  +.|..+|-.|+.-|..++.+++.++++++|..- ++--..+|...+.+-....++.....+|.+....
T Consensus        29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            3555665543  558999999999999999999999999999743 2334567888888888889999999999998866


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCh------HHHHHHHHHHHH-CCCCC-CHHHHHHHHH---HHH------HcCCHHHHHHH
Q 008105          217 GCEPDVITYNTILRTMFDNGKF------KQAIGFWKDQLR-KGCPP-YLITYTILIE---QVC------KQCGIARAIEV  279 (577)
Q Consensus       217 g~~~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~-~~~~~-~~~~~~~l~~---~~~------~~g~~~~A~~~  279 (577)
                        ..+...|...+.--.+....      ....+.|+-.+. .++.| ....|+..+.   ..-      .+.+++...+.
T Consensus       106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~  183 (660)
T COG5107         106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG  183 (660)
T ss_pred             --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence              35577777766654443321      112233333332 23333 2233333332   222      22334555566


Q ss_pred             HHHHHHcCCCCCHhhHHH------HHHHHHh-------cCCHHHHHHHHHHHhh--CCCCC----CHHHHHHH-------
Q 008105          280 LDDMAIEGCSPDIVTYNS------LVNFSCK-------QGKYDDAVLVINNLLS--RGMEP----NSITYNTL-------  333 (577)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~------li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p----~~~~~~~l-------  333 (577)
                      +.++..--+..=...|+-      =++-...       .--+-.|.+.++++..  .|...    +..+++..       
T Consensus       184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~  263 (660)
T COG5107         184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN  263 (660)
T ss_pred             HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence            666654311111112221      1111110       1113455556665543  23221    12222221       


Q ss_pred             ----HHHHHc-----cCC-H-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          334 ----LHSLGS-----RGC-W-DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNT  402 (577)
Q Consensus       334 ----l~~~~~-----~g~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  402 (577)
                          |+-=..     .|+ . ....-++++.... ..-....|----..+...++-+.|+.....-...  .|+...+  
T Consensus       264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~--  338 (660)
T COG5107         264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMF--  338 (660)
T ss_pred             hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhee--
Confidence                110000     000 0 1111122222211 1122233333333344566777777766554432  2331111  


Q ss_pred             HHHHHHhcCChhHHHHHHHHH-----------------------------hhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105          403 VLGALCKEGMLNEALQLLHLL-----------------------------NGSSCSPCLITYNTLIDGLAKKGCMEKAMV  453 (577)
Q Consensus       403 li~~~~~~g~~~~A~~~~~~~-----------------------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  453 (577)
                      +-..|.-..+-++....|+..                             .-+....-...|...++.-.+...++.|..
T Consensus       339 lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~  418 (660)
T COG5107         339 LSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARK  418 (660)
T ss_pred             HHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHH
Confidence            111111111111111111110                             000001123456777887788888999999


Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH-HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          454 LYGQMMENG-ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY-RLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       454 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      +|-+..+.| +.++...+++++..++ .|+..-|..+|+--...  -||...| ...+.-+.+-++-+.|..+|+..+. 
T Consensus       419 ~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~-  494 (660)
T COG5107         419 LFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE-  494 (660)
T ss_pred             HHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH-
Confidence            999999988 6788999999998766 57888999999875543  2343333 4566677888999999999997765 


Q ss_pred             CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          532 RYKPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       532 ~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      .+..+  ..+|..+++--..-|+...+..+=+++.+.
T Consensus       495 r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         495 RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            22333  678999999889999998888887777663

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.58  E-value=0.12  Score=43.41  Aligned_cols=59  Identities=17%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 008105          190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQL  249 (577)
Q Consensus       190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~  249 (577)
                      ...++..+...|++++|..+.+.+.... +-|...|..++.+|...|+..+|.+.|+++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            3445555556666666666666665543 4455566666666666666666666666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.47  E-value=0.011  Score=42.63  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          476 GFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       476 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      .|.+.+++++|.+.++.+...+.. +...|.....++.+.|++++|.+.+++..
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l   56 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL   56 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344555555555555555544321 33444444555555555555555555555

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.47  E-value=0.85  Score=44.24  Aligned_cols=31  Identities=13%  Similarity=0.019  Sum_probs=24.6

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          501 RNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       501 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      +-..+.+++.++.-.|++++|.+..++|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4445577888888899999999999998864

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.46  E-value=0.038  Score=52.58  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----CCC-CccHH
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMM----ENGIS-PDDITHRTLIWGFCRADQVEEAVDLLKEIGK----RGN-KMRNS  503 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~  503 (577)
                      .|..|...|.-.|+++.|+...+.-.    +.|-+ .....+..+..++.-.|+++.|.+.|+....    .|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34555555556677777766554422    22211 1234566677777777788887777766432    221 11223


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMIS----S-RYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      +...+...|.-..++++|+.++.+-+.    . ...-....+.+|..++...|..++|..+.+.-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            334466666666777777777765432    1 1223456677788888888888887777666554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=1.8  Score=45.65  Aligned_cols=121  Identities=12%  Similarity=0.062  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD--FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      +.....-+..+++...++-|+.+...-   +..++  .........-+.+.|++++|...+-+.+..- .|     ..+|
T Consensus       334 ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi  404 (933)
T KOG2114|consen  334 EKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI  404 (933)
T ss_pred             eccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence            344566788888888889888877542   22221  1223334455567889999888777665321 22     2345


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKD  247 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  247 (577)
                      .-|....++.+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~  456 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISK  456 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhc
Confidence            556666667777777778877774 3444556778888888877776655544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.32  E-value=1.1  Score=43.55  Aligned_cols=95  Identities=18%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          156 INLIRGLIRIDRIEKASKVLQIMVMSG---GVPDTITYNMMVGGLCK---RGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       156 ~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      ..++-+|....+++..+++.+.+....   +......-....-++-+   .|+.++|++++..+....-.++..+|..+.
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            344556777777888888888776541   11122222233444455   777888888877755444467777777776


Q ss_pred             HHHHh---------CCChHHHHHHHHHHHH
Q 008105          230 RTMFD---------NGKFKQAIGFWKDQLR  250 (577)
Q Consensus       230 ~~~~~---------~~~~~~A~~~~~~~~~  250 (577)
                      +.|-.         ...+++|+..|.+.-+
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe  254 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE  254 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence            66532         1235566666665443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.31  E-value=0.029  Score=40.42  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=25.7

Q ss_pred             HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          126 NFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       126 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      .|.+.+++++|.+.+++++..++ .+...+......+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44445555555555555544422 24444444444444445555555444444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.29  E-value=1.1  Score=42.91  Aligned_cols=109  Identities=15%  Similarity=0.043  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          400 YNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR  479 (577)
Q Consensus       400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  479 (577)
                      .+..+.-+...|+...|.++-.+..    -|+...|-..+.+++..++|++-..+...      +-.+.-|...+.+|.+
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK  249 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence            3344555556666666666655442    45666777777777777777665554322      1234566777777777


Q ss_pred             cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          480 ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       480 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                      .|+..+|..+..++     +     +..-+..|.+.|++.+|.+..-+.
T Consensus       250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            77777777666552     1     123455667777777776654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.21  E-value=1.7  Score=44.18  Aligned_cols=410  Identities=11%  Similarity=0.034  Sum_probs=217.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHF-CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      -..|+.||.---.....+.+...++.++..  .|...- |......=.+.|..+.+.++|++.+.. ++.+...|.....
T Consensus        45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~  121 (577)
T KOG1258|consen   45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA  121 (577)
T ss_pred             ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence            345667776665666667778888888764  344443 333444445779999999999998864 5667777777665


Q ss_pred             HHH-hcCChHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---H
Q 008105          196 GLC-KRGQIRSAIALLDEMSVS-GCE-PDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVC---K  269 (577)
Q Consensus       196 ~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~  269 (577)
                      .++ ..|+.+.....|+..... |.. .....|...|..-..++++.....++++.++.    ....++....-|.   +
T Consensus       122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~  197 (577)
T KOG1258|consen  122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN  197 (577)
T ss_pred             HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence            554 467888888889888754 321 34567888888888889999999999998864    2233333332222   1


Q ss_pred             c------CCHHHHHHHHHHHHHc---C-CCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          270 Q------CGIARAIEVLDDMAIE---G-CSPDIVTYNSLVNFSCKQ-GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG  338 (577)
Q Consensus       270 ~------g~~~~A~~~~~~~~~~---~-~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  338 (577)
                      .      ...+++.++-.....+   . ..+....+..-+.--... +..+++.....+..           ...-.++-
T Consensus       198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~  266 (577)
T KOG1258|consen  198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQ  266 (577)
T ss_pred             cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHH
Confidence            1      1223333222222210   0 000001111111000000 00111111110000           00111122


Q ss_pred             ccCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          339 SRGCWDAVDKILDIMNEAS-------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG  411 (577)
Q Consensus       339 ~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  411 (577)
                      ...........|+.-..+-       .+++..+|..-+..-.+.|+.+.+.-+|++..-- +..-...|-..+.-....|
T Consensus       267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~  345 (577)
T KOG1258|consen  267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG  345 (577)
T ss_pred             hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence            2222333333333333221       1235567777777777888888888888776532 1222333444444444457


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH--
Q 008105          412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLA-KKGCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAV--  487 (577)
Q Consensus       412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~--  487 (577)
                      +.+-|..++....+-.++ +......+-..+. ..|++..|..+++.....-  |+.. .-..-+....+.|+.+.+.  
T Consensus       346 ~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~  422 (577)
T KOG1258|consen  346 DVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK  422 (577)
T ss_pred             chhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence            777777777665554422 2222222222333 4568888888888887652  4432 2222234445667777766  


Q ss_pred             -HHHHHHhhCCCCccHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          488 -DLLKEIGKRGNKMRNSAYRLVIHG-----LCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDG  551 (577)
Q Consensus       488 -~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  551 (577)
                       +++.......  -+......+.--     +.-.++.+.|..++.++.+ -.+++...|..+++.+...+
T Consensus       423 ~~l~s~~~~~~--~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~-~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  423 NELYSSIYEGK--ENNGILEKLYVKFARLRYKIREDADLARIILLEAND-ILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHhcccc--cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh-cCCccHHHHHHHHHHHHhCC
Confidence             3333333211  121222222111     2336778888888888876 34666777777777665555

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.21  E-value=0.018  Score=42.25  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMISS--RYK---PD-DTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      +|+.+...|...|++++|+..+++.++.  ...   |+ ..++..+...+...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444455555555555555555544431  011   11 2334445555555555555555555544

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.15  E-value=0.036  Score=46.55  Aligned_cols=67  Identities=22%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh-----hCCCCCCHHHH
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS-----VSGCEPDVITY  225 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~~~  225 (577)
                      ++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+++.     +.|+.|+..+-
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4555667888888988888888876 5577888888999999999999988888775     33777766553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.11  E-value=0.028  Score=41.16  Aligned_cols=61  Identities=10%  Similarity=0.102  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh----CCC-Ccc-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          469 THRTLIWGFCRADQVEEAVDLLKEIGK----RGN-KMR-NSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       469 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      +++.+...|...|++++|++.|++..+    .|. .|+ ..++..+..++...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455555566666666666666655543    111 111 3455666666666777777776666654

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.06  E-value=1.6  Score=42.65  Aligned_cols=188  Identities=14%  Similarity=0.112  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQI----PDFHFCINLIRGLIRIDRIEKASKVLQIMVMS---GGVPDT  187 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~  187 (577)
                      +|-..=+..+.++...|++.+++.+++++..+-.+    -+..+|+.++-.+.+        ..|-++.+.   .+-|| 
T Consensus       126 ~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd-  196 (549)
T PF07079_consen  126 SDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD-  196 (549)
T ss_pred             hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH-
Confidence            34445577788899999999999999888766433    577778776555543        334444322   22222 


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN--GKFKQAIGFWKDQLRKGCPPYLI-TYTILI  264 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~  264 (577)
                        |--++-.|.+.=.      .++.-.-..+.|.......++....-.  .+..--.++++.....-+.|+-. ....|.
T Consensus       197 --yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~  268 (549)
T PF07079_consen  197 --YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLK  268 (549)
T ss_pred             --HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence              3445555543211      111111011123333333343333221  11222222222222333444432 333344


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          265 EQVCKQCGIARAIEVLDDMAIEGC----SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       265 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ..+.+  +.+++..+-+.+....+    +.=+.++..++....+.++...|.+.+.-+...
T Consensus       269 ~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l  327 (549)
T PF07079_consen  269 QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL  327 (549)
T ss_pred             HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence            44433  44444444433332211    112357788888888999999998888777655

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15331 chaperone protein SicA; Provisional

Probab=96.02  E-value=0.18  Score=42.25  Aligned_cols=86  Identities=9%  Similarity=-0.068  Sum_probs=40.3

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105          163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI  242 (577)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~  242 (577)
                      ...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+ .-|+...-....++...|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence            34555555555555554433 2233344444444444555555555554443332 223333334444555555555555


Q ss_pred             HHHHHHHH
Q 008105          243 GFWKDQLR  250 (577)
Q Consensus       243 ~~~~~~~~  250 (577)
                      ..|.....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            55554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.94  E-value=1.6  Score=41.72  Aligned_cols=294  Identities=13%  Similarity=0.061  Sum_probs=179.7

Q ss_pred             HHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          190 YNMMVGGLC--KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM--FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE  265 (577)
Q Consensus       190 ~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  265 (577)
                      |.+|-.++.  -.|+-..|.++-.+..+. +..|......++.+-  .-.|+++.|.+-|+.|...- .....-...|.-
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyl  162 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYL  162 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHH
Confidence            444444443  357777787777665422 134544444555443  34799999999999997531 111112233333


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHH--HHHHHHHHHH---c
Q 008105          266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRG-MEPNSI--TYNTLLHSLG---S  339 (577)
Q Consensus       266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~---~  339 (577)
                      ..-+.|..+.|.+.-++.-... +.-...+...+...|..|+++.|+++++.-.... +.++..  .-..|+.+-.   -
T Consensus       163 eAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            4457788888888888776552 2234677888899999999999999998766542 344432  2223332221   1


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105          340 RGCWDAVDKILDIMNEASHSPTVFTY-NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ  418 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  418 (577)
                      ..+...|...-.+..+.  .|+..-- -.-..++.+.|+..++-.+++.+-+..  |.+..+...  .+.+.|+.  +..
T Consensus       242 dadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gdt--a~d  313 (531)
T COG3898         242 DADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGDT--ALD  313 (531)
T ss_pred             cCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCCc--HHH
Confidence            23455565555554443  3444322 223467888999999999999998874  444443332  23455543  222


Q ss_pred             HHHHH---hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 008105          419 LLHLL---NGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR-ADQVEEAVDLLKEIG  494 (577)
Q Consensus       419 ~~~~~---~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~  494 (577)
                      -++..   .... +.+..+...+..+-...|++..|..--+...+  ..|....|..|.+.-.. .|+-.++...+.+..
T Consensus       314 RlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         314 RLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            22222   2111 33566777777888888999888877776665  35888888888776554 499999999888887


Q ss_pred             hCC
Q 008105          495 KRG  497 (577)
Q Consensus       495 ~~~  497 (577)
                      +..
T Consensus       391 ~AP  393 (531)
T COG3898         391 KAP  393 (531)
T ss_pred             cCC
Confidence            753

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.92  E-value=0.18  Score=49.54  Aligned_cols=67  Identities=13%  Similarity=0.046  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF---HFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      +.+...|+.+..+|.+.|++++|+..|++.++.++. +.   .+|..+..+|.+.|++++|++.+++.++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999987433 22   45899999999999999999999999875

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=2.7  Score=43.79  Aligned_cols=325  Identities=15%  Similarity=0.093  Sum_probs=186.6

Q ss_pred             hCCCCCCHHHHHH-----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcC
Q 008105          215 VSGCEPDVITYNT-----ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG--IARAIEVLDDMAIEG  287 (577)
Q Consensus       215 ~~g~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~  287 (577)
                      ..|++.+..-|..     +|.-+...+.+..|+++-+.+...-.. +...|......+.+..+  -+++.+.+++=...-
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            4577777776654     567778889999999988776432111 24566666666665533  233333333322221


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------
Q 008105          288 CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGME----PNSITYNTLLHSLGSRGCWDAVDKILDIMNEA-------  356 (577)
Q Consensus       288 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------  356 (577)
                      . -+..+|..+..-...+|+.+-|..+++.=...+..    .+..-+...+.-+...|+.+-...++-.+...       
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~  582 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF  582 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            2 34567888888889999999999887654433211    12223444555566777777766666555432       


Q ss_pred             ----CCCCCHHHHHHHHH--------HHHHcCCHHHHHHHHH--HHHHCC-CCCCHHHHHHHHHHHHhcCChh---H---
Q 008105          357 ----SHSPTVFTYNILIN--------GLCKYGLVDRAINSFN--QMVSKN-CQPDIVTYNTVLGALCKEGMLN---E---  415 (577)
Q Consensus       357 ----~~~~~~~~~~~li~--------~~~~~g~~~~A~~~~~--~m~~~~-~~~~~~~~~~li~~~~~~g~~~---~---  415 (577)
                          ..+.....|.-++.        .+.+.++-..+...|.  ...... +.+-.........++.+.....   +   
T Consensus       583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence                11112222222221        1111122222222211  100000 1111222233344444443311   1   


Q ss_pred             ----HHHHHHHHhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105          416 ----ALQLLHLLNG-SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLL  490 (577)
Q Consensus       416 ----A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  490 (577)
                          -+++.+.+.. .+..-..-+.+--+.-+...|+..+|.++-.+.+    -||...|-.=+.+++..+++++-.++-
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA  738 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA  738 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence                1122222221 1222333455666777788899999988877765    488888988899999999999887776


Q ss_pred             HHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008105          491 KEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLW  560 (577)
Q Consensus       491 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  560 (577)
                      +.+..      +.-|.-.+.+|.+.|+.++|.+++-+.-  | .+      -...+|.+.|++.+|.++.
T Consensus       739 kskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~-l~------ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  739 KSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G-LQ------EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hccCC------CCCchhHHHHHHhcccHHHHhhhhhccC--C-hH------HHHHHHHHhccHHHHHHHH
Confidence            65542      3456668889999999999999998763  2 11      5667888999998887654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.85  E-value=0.18  Score=40.79  Aligned_cols=53  Identities=4%  Similarity=0.020  Sum_probs=40.0

Q ss_pred             CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 008105          497 GNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS-SRYKPDDTVFSTIVKKVAD  549 (577)
Q Consensus       497 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~  549 (577)
                      ...|+..+..+++.+|+..|++..|.++++...+ .+++-+..+|..|+.-...
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            4567788888888888888888888888888765 4677778888887764433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK15331 chaperone protein SicA; Provisional

Probab=95.85  E-value=0.27  Score=41.20  Aligned_cols=95  Identities=9%  Similarity=0.028  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      .-...-.+...|++++|..+|.-+...++. |..-|..|..++-..+++++|...|......+ .-|+..+-.....|..
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~  117 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence            345566778899999999999998886544 66677778888888899999999999887665 3455556667888999


Q ss_pred             cCChHHHHHHHHHHhhC
Q 008105          200 RGQIRSAIALLDEMSVS  216 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~  216 (577)
                      .|+.+.|...|+.....
T Consensus       118 l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        118 MRKAAKARQCFELVNER  134 (165)
T ss_pred             hCCHHHHHHHHHHHHhC
Confidence            99999999999998863

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.62  E-value=0.87  Score=36.39  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=75.4

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      .|..++..++..+...+.   +..-+|-+|--....-+-+-..++++..-+.   -|.          ..+|++......
T Consensus        15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~C   78 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIEC   78 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHHH
T ss_pred             hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHHH
Confidence            456666666666555432   3444444444333333333333333333221   111          123444444333


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          490 LKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       490 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      +-.+     ..+.......++.+...|+-+.-.++..++.+ +-.+++...-.+..+|.+.|+..++.+++.+.-++|++
T Consensus        79 ~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   79 YAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3222     12455667778888899999998888888875 34788999999999999999999999999998888764

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.24  Score=47.56  Aligned_cols=139  Identities=14%  Similarity=0.030  Sum_probs=80.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      .+.|.+.|++..|...|++++..- .            +.+.-+.++.....        ..-...++.+.-+|.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence            357788888888888888866430 0            00111111111111        11234556666677777777


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI-ARAIEVLDD  282 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~  282 (577)
                      ..|++..++....+ ++|+...-.-..++...|+++.|+..|+++++.. |-|...-+.|+....+.... +...++|..
T Consensus       274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777665 5667776667777777777777777777777642 33333334444433333332 334566776


Q ss_pred             HHH
Q 008105          283 MAI  285 (577)
Q Consensus       283 ~~~  285 (577)
                      |..
T Consensus       352 mF~  354 (397)
T KOG0543|consen  352 MFA  354 (397)
T ss_pred             Hhh
Confidence            654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.53  E-value=0.23  Score=40.12  Aligned_cols=51  Identities=20%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHH
Q 008105          182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-GCEPDVITYNTILRTM  232 (577)
Q Consensus       182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~  232 (577)
                      ...|+..+..+++.+|+..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34566677777777777777777777777666543 5555666666666544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.49  E-value=0.38  Score=48.34  Aligned_cols=158  Identities=12%  Similarity=0.098  Sum_probs=101.0

Q ss_pred             HHHHHhcCChhhHHHHHH--HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          124 LQNFCSRGKLTDASKLID--IMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      .+...-+++++++.++.+  ++...  . +....+.+++.+-+.|..+.|+++-.+-.            .-.+...+.|
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~--i-~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg  332 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPN--I-PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLG  332 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT
T ss_pred             HHHHHHcCChhhhhhhhhhhhhccc--C-ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcC
Confidence            345566788888777665  22211  1 24457778888888899998888754322            2345567889


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105          202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD  281 (577)
Q Consensus       202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  281 (577)
                      +++.|.++.++.      .+...|..|.....++|+++-|.+.|.+..         -+..|+-.|.-.|+.+.-.++.+
T Consensus       333 ~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~  397 (443)
T PF04053_consen  333 NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAK  397 (443)
T ss_dssp             -HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred             CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHH
Confidence            998888765443      367789999999999999999998887743         35566667788888888777777


Q ss_pred             HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          282 DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINN  317 (577)
Q Consensus       282 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  317 (577)
                      ....+|      -+|....++.-.|+.++..+++.+
T Consensus       398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  398 IAEERG------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            776654      255556666667787777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.38  E-value=0.61  Score=37.12  Aligned_cols=93  Identities=15%  Similarity=-0.028  Sum_probs=70.0

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT---YNMMVGGLCKR  200 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~---~~~li~~~~~~  200 (577)
                      .-++...|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.=+++.++.........   |-.-...|-..
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            45678889999999999998876 345788899999999999999999988888877532333322   33334456678


Q ss_pred             CChHHHHHHHHHHhhCC
Q 008105          201 GQIRSAIALLDEMSVSG  217 (577)
Q Consensus       201 g~~~~A~~~~~~~~~~g  217 (577)
                      |+-+.|..-|+...+.|
T Consensus       129 g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLG  145 (175)
T ss_pred             CchHHHHHhHHHHHHhC
Confidence            88888888888887766

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.32  E-value=4.7  Score=42.71  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV----GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      ...-+..+.+..-++-|+.+-+.-     ..|..+...+.    +-+.+.|++++|...|-+-...- .|     ..++.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~  405 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIK  405 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHH
Confidence            444566667777777777665543     22333333333    33446788888877776554321 22     22455


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD  310 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  310 (577)
                      -|....+..+-..+++.+.+.|.. +...-..|+..|.+.++.+.-.+..+... .|..  ..-....+..+.+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            555666666666777777777643 44455667777888777776665554443 2211  1112344455555555555


Q ss_pred             HHHHHH
Q 008105          311 AVLVIN  316 (577)
Q Consensus       311 A~~~~~  316 (577)
                      |..+-.
T Consensus       482 a~~LA~  487 (933)
T KOG2114|consen  482 AELLAT  487 (933)
T ss_pred             HHHHHH
Confidence            544433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=1.7  Score=40.16  Aligned_cols=147  Identities=13%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH
Q 008105          160 RGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK  239 (577)
Q Consensus       160 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~  239 (577)
                      ......|++.+|..+|....... +-+...--.++..|...|+.+.|..++..++..--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            34456666677777666666554 22344455566677777777777777776654321112222222334444444444


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHH
Q 008105          240 QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEG-CSPDIVTYNSLVNFSCKQGKYD  309 (577)
Q Consensus       240 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~  309 (577)
                      +...+-.+.-..  |-|...-..+...+...|+.+.|.+.+-.+.+++ -.-|...-..++..+.-.|.-+
T Consensus       221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence            444433333321  3355556666667777777777777666665532 1224455566666666666433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.25  E-value=0.35  Score=47.63  Aligned_cols=66  Identities=15%  Similarity=0.107  Sum_probs=48.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDD----ITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      +.+...++.+..+|.+.|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445667777777888888888888888887764  3553    34777777888888888888888777764

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=2.5  Score=39.08  Aligned_cols=143  Identities=14%  Similarity=0.100  Sum_probs=73.3

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARA  276 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  276 (577)
                      ....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            445666677777666666543 2334455566667777777777777766654332111122222233344444444433


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHccCC
Q 008105          277 IEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM-EPNSITYNTLLHSLGSRGC  342 (577)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~  342 (577)
                      .++-.+.-..  +-|...-..+...+...|+.++|.+.+-.+.+... .-|...-..++..+.-.|.
T Consensus       223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            3333333322  22455555566666677777777665555544311 1234445555555555553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.21  E-value=0.33  Score=44.24  Aligned_cols=87  Identities=15%  Similarity=0.061  Sum_probs=37.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcc-HHHHHHHHHHHHhcCChH
Q 008105          444 KKGCMEKAMVLYGQMMENGI--SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR-GNKMR-NSAYRLVIHGLCKSKKVD  519 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~~g~~~  519 (577)
                      +.|++..|...|...++..-  .-....+-.|..++...|++++|...|..+.+. +-.|. +..+--+.....+.|+.+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            33445555555555554320  001122333444555555555555555544431 11111 233344444444555555


Q ss_pred             HHHHHHHHHHH
Q 008105          520 MAIQVLELMIS  530 (577)
Q Consensus       520 ~A~~~~~~m~~  530 (577)
                      +|...|++..+
T Consensus       233 ~A~atl~qv~k  243 (262)
T COG1729         233 EACATLQQVIK  243 (262)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.20  E-value=1.5  Score=36.31  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      ..++..+.+.+.+.....+++.+...+. .+...++.++..|++.++ .+..+.++.      ..+......+++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            4556666666666666666666666552 455566666666665432 222333321      11222233344555555


Q ss_pred             CChHHHHHHHHHH
Q 008105          201 GQIRSAIALLDEM  213 (577)
Q Consensus       201 g~~~~A~~~~~~~  213 (577)
                      +.++++.-++.++
T Consensus        83 ~l~~~~~~l~~k~   95 (140)
T smart00299       83 KLYEEAVELYKKD   95 (140)
T ss_pred             CcHHHHHHHHHhh
Confidence            5555555555444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.09  E-value=0.52  Score=45.36  Aligned_cols=139  Identities=11%  Similarity=0.028  Sum_probs=97.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh
Q 008105          159 IRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF  238 (577)
Q Consensus       159 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~  238 (577)
                      .+.|.+.|++..|..-|+..+..=             -|.+.-+.++.....        ..-..+++.+..++.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhH
Confidence            456889999999999998876420             011111222222221        22344677788899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHhcCCHHH-HHHHHH
Q 008105          239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVT-YNSLVNFSCKQGKYDD-AVLVIN  316 (577)
Q Consensus       239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~-A~~~~~  316 (577)
                      .+|++.-.+.+..+ ++|....---..++...|+++.|+..|+.+.+.  .|+... -+.++..-.+.....+ ..++|.
T Consensus       274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~  350 (397)
T KOG0543|consen  274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYA  350 (397)
T ss_pred             HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998875 678887777788999999999999999999987  455444 4445555444444443 468888


Q ss_pred             HHhhC
Q 008105          317 NLLSR  321 (577)
Q Consensus       317 ~m~~~  321 (577)
                      .|...
T Consensus       351 ~mF~k  355 (397)
T KOG0543|consen  351 NMFAK  355 (397)
T ss_pred             HHhhc
Confidence            88764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.06  E-value=2  Score=43.87  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=67.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCCC---CccHHHHHHHHHHHHhcCChHH
Q 008105          445 KGCMEKAMVLYGQMMENGISPDDITHRTL-IWGFCRADQVEEAVDLLKEIGKRGN---KMRNSAYRLVIHGLCKSKKVDM  520 (577)
Q Consensus       445 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~  520 (577)
                      ..+.+.|.++++.+.+.  -|+...|... .+.+...|++++|.+.|++......   +.....+--+...+.-.++|++
T Consensus       246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            34566777777777664  3555544332 3445566777777777776543110   1122334445556667777888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 008105          521 AIQVLELMISSRYKPDDTVFSTIVK-KVADDGMT-------EEAYKLWQKLIE  565 (577)
Q Consensus       521 A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~~~  565 (577)
                      |.+.|.++.+.. .-+..+|..+.. ++...|+.       ++|.+++.+...
T Consensus       324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            887777777532 223444443333 34556666       677777766654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.06  E-value=0.43  Score=43.38  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHH
Q 008105          429 SPCLITYNTLIDGLAK-----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNS  503 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  503 (577)
                      .-|..+|...+..+..     .+.++=....++.|.+.|+.-|..+|+.|+..+-+..                +.|...
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv  127 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV  127 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence            3456677777776653     3456666667778888888888888888887654322                122221


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGM  552 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  552 (577)
                       +....-.|-+  +-+-+++++++|..+|+-||.++-..|+.++.+.|-
T Consensus       128 -fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 -FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             -HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence             1111111211  234577888888888888888888888888877775

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.00  E-value=0.86  Score=45.88  Aligned_cols=130  Identities=14%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105          295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK  374 (577)
Q Consensus       295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  374 (577)
                      .+.++..+-+.|..+.|+++..+-.            .-.....+.|+++.|.++.++.      .+...|..|.+...+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~  359 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR  359 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence            4555555556666666655442211            1122334556666665543322      245566666666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL  454 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  454 (577)
                      .|+++-|.+.|.+...         +..|+-.|.-.|+.+.-.++.+.....|      -++....++.-.|+.++..++
T Consensus       360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l  424 (443)
T PF04053_consen  360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL  424 (443)
T ss_dssp             TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred             cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666665432         3444555555666655555555554443      133344444445555555555


Q ss_pred             HHH
Q 008105          455 YGQ  457 (577)
Q Consensus       455 ~~~  457 (577)
                      +.+
T Consensus       425 L~~  427 (443)
T PF04053_consen  425 LIE  427 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.95  E-value=1.1  Score=36.80  Aligned_cols=84  Identities=13%  Similarity=0.140  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      +..+-.-.....+.|++++|.+.|+.+..+-+-.  ...+-..++.+|.+.+++++|...+++.++..+.....-|-..+
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3444445666778899999999999988873221  33445557888899999999999999998886554445566666


Q ss_pred             HHHHhc
Q 008105          195 GGLCKR  200 (577)
Q Consensus       195 ~~~~~~  200 (577)
                      .+++..
T Consensus        90 ~gL~~~   95 (142)
T PF13512_consen   90 RGLSYY   95 (142)
T ss_pred             HHHHHH
Confidence            665543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.80  E-value=2.9  Score=37.55  Aligned_cols=222  Identities=16%  Similarity=0.063  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105          306 GKYDDAVLVINNLLSRGMEP-NSITYNTLLHSLGSRGCWDAVDKILDIMNEA-SHSPTVFTYNILINGLCKYGLVDRAIN  383 (577)
Q Consensus       306 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~  383 (577)
                      +....+...+.......... ....+......+...+.+..+...+...... ........+......+...+....+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            45555555555555442221 2345555566666666677666666665542 223344555555666666666667777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          384 SFNQMVSKNCQPDIVTYNTVLG-ALCKEGMLNEALQLLHLLNGSSC--SPCLITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       384 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      .+.........+ ......... .+...|+++.|...+........  ......+......+...++.+.+...+.+...
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            766666543222 111222222 55666666666666666644211  01223333333334555666666666666655


Q ss_pred             CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          461 NGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       461 ~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .. .. ....+..+...+...++.+.|...+......... ....+..+...+...+..+++...+.+...
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            32 12 2445555555666666666666666665553211 122333333333355556666666665553

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.64  E-value=3.8  Score=40.83  Aligned_cols=99  Identities=13%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 008105          469 THRTLIWGFCRADQVEEAVDLLKEIGKRGN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD--TVFSTIVK  545 (577)
Q Consensus       469 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~  545 (577)
                      .=..+..++-+.|+.++|.+.+++|.+... ..+......|+.++...+.+.++..++.+.-+.. .|..  ..|+..+-
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL  339 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL  339 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence            334566666677888888888888765322 1233455667888888888888888887764322 2333  33444333


Q ss_pred             HHHhcCC---------------HHHHHHHHHHHHHcCC
Q 008105          546 KVADDGM---------------TEEAYKLWQKLIEWKV  568 (577)
Q Consensus       546 ~~~~~g~---------------~~~A~~~~~~~~~~~~  568 (577)
                      .....|+               -..|.+.+.+..+.|+
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNP  377 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNP  377 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCC
Confidence            3333332               1235567777777665

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.60  E-value=2.7  Score=42.98  Aligned_cols=116  Identities=17%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CChhHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 008105          411 GMLNEALQLLHLLNGSSCSPCLITYNTL-IDGLAKKGCMEKAMVLYGQMMENG---ISPDDITHRTLIWGFCRADQVEEA  486 (577)
Q Consensus       411 g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A  486 (577)
                      ...+.|.++++.+.+.  -|+...|... .+.+...|++++|.+.|++.....   -......+--+...+.-.+++++|
T Consensus       247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3556666666666654  3444444322 344455667777777777554211   011233444555556666777777


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHH-HHHhcCCh-------HHHHHHHHHHH
Q 008105          487 VDLLKEIGKRGNKMRNSAYRLVIH-GLCKSKKV-------DMAIQVLELMI  529 (577)
Q Consensus       487 ~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~  529 (577)
                      .+.|..+.+..- -...+|..+.. ++...|+.       ++|.++|.+.-
T Consensus       325 ~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  325 AEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            777777766321 12233332222 22345555       66666666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.57  E-value=4.2  Score=38.36  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105          365 YNILINGLCKYGLVD---RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS  426 (577)
Q Consensus       365 ~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  426 (577)
                      ...++.+|...+..+   +|..+++.+.... +-.+..+..-+..+.+.++.+++.+.+..|...
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            344445555444432   3333333443321 222333334444444455555555555555543

It is also involved in sporulation [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.49  E-value=0.35  Score=43.93  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh
Q 008105          219 EPDVITYNTILRTMFD-----NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV  293 (577)
Q Consensus       219 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  293 (577)
                      +.|..+|-+.+..+..     .+.++-....++.|.+-|+..|..+|+.|+..+-+..                +.|...
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv  127 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV  127 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence            4566667666666643     3455666666666777777777777777666443211                111111


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHH
Q 008105          294 TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW-DAVDKILDIM  353 (577)
Q Consensus       294 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~  353 (577)
                       +....-.|-  .+-+=+++++++|...|+.||..+-..+++++.+.+.. .+..++.-.|
T Consensus       128 -fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  128 -FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             -HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence             111111111  12234678899999999999999988999998877653 3333333333

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.47  E-value=2.1  Score=34.35  Aligned_cols=61  Identities=20%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105          331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN  392 (577)
Q Consensus       331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  392 (577)
                      ...+..+...|+-++..++...+.+. -.+++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            34455555666666666666665532 23555556666666666666666666666666655

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.39  E-value=2.5  Score=34.99  Aligned_cols=39  Identities=10%  Similarity=0.134  Sum_probs=15.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC  408 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  408 (577)
                      +..+.+.+.......+++.+...+ ..+....+.++..|+
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~   52 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYA   52 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHH
Confidence            333333344444444444444333 233333444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.18  E-value=0.89  Score=41.49  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PDTITYNMMV  194 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li  194 (577)
                      .|+.-+..| +.|++..|...|...++..+.  -....+.-|..++...|++++|..+|..+.+.-++  .-+..+--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            566555444 556688888888888776322  12223444677777788888888877777765321  1234555566


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6666777777777777777665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.16  E-value=1.2  Score=35.54  Aligned_cols=88  Identities=13%  Similarity=0.042  Sum_probs=35.2

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI---TYTILIEQVCKQCGIAR  275 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~  275 (577)
                      ..|+++.|++.|.+....- +.....||.-..++.-+|+.++|++-+++.++..-+....   +|..-...|-..|+.+.
T Consensus        55 E~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~  133 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA  133 (175)
T ss_pred             hccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence            3444444444444433321 2234444444444444444444444444443321111111   11112223444555555


Q ss_pred             HHHHHHHHHHcC
Q 008105          276 AIEVLDDMAIEG  287 (577)
Q Consensus       276 A~~~~~~~~~~~  287 (577)
                      |..-|+...+.|
T Consensus       134 AR~DFe~AA~LG  145 (175)
T KOG4555|consen  134 ARADFEAAAQLG  145 (175)
T ss_pred             HHHhHHHHHHhC
Confidence            555555554444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.13  E-value=4.1  Score=36.53  Aligned_cols=205  Identities=12%  Similarity=0.058  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..|..-..+|....+++.|...+.+..+. ...|...|.       ....+++|.-+.+++.+.  .--+..|+-...+|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            45677778888888888888877776642 121222111       123345566666666543  22244566777788


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHHcCC
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG--CPPY---LITYTILIEQVCKQCG  272 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~g~  272 (577)
                      ..+|.++.|-..+++.-+.                .++-++++|+++|++...--  -..+   ...+...-..+.+...
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            8888888887777765431                23445556666665543210  0001   1112223344555555


Q ss_pred             HHHHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHccCCHH
Q 008105          273 IARAIEVLDDMAIE----GCSPDI-VTYNSLVNFSCKQGKYDDAVLVINNLLSRG---MEPNSITYNTLLHSLGSRGCWD  344 (577)
Q Consensus       273 ~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~  344 (577)
                      +++|-..|.+-...    .-.++. ..|...|-.+.-..++..|...++.--+.+   -.-+..+...|+.+| ..|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence            55554444332211    001111 223344444555556666666666543321   112334555555554 345555


Q ss_pred             HHHHH
Q 008105          345 AVDKI  349 (577)
Q Consensus       345 ~a~~~  349 (577)
                      ++.++
T Consensus       245 ~~~kv  249 (308)
T KOG1585|consen  245 EIKKV  249 (308)
T ss_pred             HHHHH
Confidence            55444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=1.7  Score=40.79  Aligned_cols=162  Identities=12%  Similarity=0.036  Sum_probs=109.3

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChh
Q 008105          339 SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTY----NTVLGALCKEGMLN  414 (577)
Q Consensus       339 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~~  414 (577)
                      ..|++.+|-..++++.+. .|.|...++..=++|.-.|+.+.-...++++... ..+|...|    ....-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            467788888888888765 5668888888888999999999888888888765 23344333    33344556789999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105          415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN---GISPDDITHRTLIWGFCRADQVEEAVDLLK  491 (577)
Q Consensus       415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  491 (577)
                      +|++.-++..+.+ +-|...-.++...+-..|+..++.++..+-.+.   +--.-...|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999988888776 566777777888888889999998876654321   100001112223334556688999999997


Q ss_pred             H-HhhCCCCccHH
Q 008105          492 E-IGKRGNKMRNS  503 (577)
Q Consensus       492 ~-m~~~~~~~~~~  503 (577)
                      . |.+.-.+.|..
T Consensus       272 ~ei~k~l~k~Da~  284 (491)
T KOG2610|consen  272 REIWKRLEKDDAV  284 (491)
T ss_pred             HHHHHHhhccchh
Confidence            6 44433344443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=93.97  E-value=4.7  Score=36.62  Aligned_cols=80  Identities=11%  Similarity=0.084  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQI--PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      .+-.-+..-.+.|++++|.+.|+.+..+.+-  -...+...++.++-+.++++.|+...++..+..+......|-..|.+
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            3334455556789999999999988876422  12334444566777888888888888888776544444556666666


Q ss_pred             HH
Q 008105          197 LC  198 (577)
Q Consensus       197 ~~  198 (577)
                      ++
T Consensus       116 Ls  117 (254)
T COG4105         116 LS  117 (254)
T ss_pred             HH
Confidence            55

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.89  E-value=2.2  Score=35.04  Aligned_cols=53  Identities=17%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             hcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105          199 KRGQIRSAIALLDEMSVSGC--EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~  251 (577)
                      +.|++++|.+.|+.+..+--  +-...+--.++.+|.+.+++++|...+++.++.
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            44555555555555543310  112233334455555555555555555555544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.81  E-value=13  Score=41.23  Aligned_cols=105  Identities=16%  Similarity=0.170  Sum_probs=53.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHc
Q 008105          298 LVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT--YNILINGLCKY  375 (577)
Q Consensus       298 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~  375 (577)
                      ....+...+.+++|.-.|+..-+.         .-.+.+|..+|+|.+|..+..++...   .+...  -..|+.-+...
T Consensus       945 ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen  945 YADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred             HHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence            333344455555555444433211         22345566666777766666655432   12211  24555566666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105          376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHL  422 (577)
Q Consensus       376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  422 (577)
                      +++-+|-++..+....        ....+..+++...+++|.++-..
T Consensus      1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence            6666666666655432        12233445555566666655443

>PRK11906 transcriptional regulator; Provisional

Probab=93.65  E-value=5.6  Score=39.56  Aligned_cols=147  Identities=14%  Similarity=0.069  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 008105          378 VDRAINSFNQMVSK-NCQPD-IVTYNTVLGALCK---------EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG  446 (577)
Q Consensus       378 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  446 (577)
                      .+.|+.+|.+.... ...|+ ...|..+..++..         .....+|.++-+...+.+ +-|......+..+....+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            45667777777622 12232 3334333333221         223456666666676666 567777777777777777


Q ss_pred             CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105          447 CMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRG-NKMRNSAYRLVIHGLCKSKKVDMAIQV  524 (577)
Q Consensus       447 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~  524 (577)
                      +++.|...|++....  .|| ...|........-+|+.++|.+.+++..+.. .+.-.......++.|+.. ..++|+++
T Consensus       353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~  429 (458)
T PRK11906        353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL  429 (458)
T ss_pred             chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence            788888888888774  354 4456666666667888888888888866532 122233344455566655 46777776


Q ss_pred             HHHH
Q 008105          525 LELM  528 (577)
Q Consensus       525 ~~~m  528 (577)
                      +-+-
T Consensus       430 ~~~~  433 (458)
T PRK11906        430 YYKE  433 (458)
T ss_pred             Hhhc
Confidence            6543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.62  E-value=6.6  Score=37.08  Aligned_cols=185  Identities=15%  Similarity=0.077  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          377 LVDRAINSFNQMVSK--------NCQPDI-----VTYNTVLGALCKEGMLN---EALQLLHLLNGSSCSPCLITYNTLID  440 (577)
Q Consensus       377 ~~~~A~~~~~~m~~~--------~~~~~~-----~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~  440 (577)
                      +++.|...+++..+.        ...|+.     .+...++.+|...+..+   +|..+++.+.... +....++..-+.
T Consensus        51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~  129 (278)
T PF08631_consen   51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLE  129 (278)
T ss_pred             ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence            666666665554332        122332     45677778888777654   5666666665443 223555656677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHhhCCCCccHH-HHH-HHH---HHH
Q 008105          441 GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGF---CRADQVEEAVDLLKEIGKRGNKMRNS-AYR-LVI---HGL  512 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~-~li---~~~  512 (577)
                      .+.+.++.+++.+.+.+|+..- .-....+..++..+   ... ....|...+..+....+.|... ... .++   ...
T Consensus       130 il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~  207 (278)
T PF08631_consen  130 ILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLT  207 (278)
T ss_pred             HHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            7777899999999999999752 21234455444444   333 3456666666665543444432 111 111   112


Q ss_pred             HhcCC------hHHHHHHHHHHHH-CCCCCCHHHHH---HH----HHHHHhcCCHHHHHHHHHHHH
Q 008105          513 CKSKK------VDMAIQVLELMIS-SRYKPDDTVFS---TI----VKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       513 ~~~g~------~~~A~~~~~~m~~-~~~~p~~~~~~---~l----~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      .+.++      .+...++++...+ .+.+.+..+-.   ++    +..+.+.+++++|.++++-..
T Consensus       208 ~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  208 TQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22222      4445455553332 23333433322   23    345678899999999988543

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.57  E-value=0.25  Score=31.29  Aligned_cols=28  Identities=11%  Similarity=0.122  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARR  146 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~  146 (577)
                      +|..+.+.|.+.|++++|+++|+++++.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555666666666666666666666665

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.07  E-value=2.9  Score=39.22  Aligned_cols=154  Identities=10%  Similarity=0.058  Sum_probs=110.8

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHH----HHHHHHHhcCCH
Q 008105          373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYN----TLIDGLAKKGCM  448 (577)
Q Consensus       373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~  448 (577)
                      -..|+..+|-..++++++. .+.|..++...=.+|.-.|+.+.-...++.+...- .++...|.    .+.-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence            3467888888889998876 47788888888899999999999888888887652 44444433    334455689999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCccHHHHHHHHHHHHhcCChHHHHHHH
Q 008105          449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR---GNKMRNSAYRLVIHGLCKSKKVDMAIQVL  525 (577)
Q Consensus       449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~  525 (577)
                      ++|++.-++..+.+ +-|...-.++...+-..|+..++.++..+-...   +--.-...|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999887754 446677778888888899999999988765441   11111122222333455668999999999


Q ss_pred             HHHH
Q 008105          526 ELMI  529 (577)
Q Consensus       526 ~~m~  529 (577)
                      ++-+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            8654

>PRK11906 transcriptional regulator; Provisional

Probab=93.06  E-value=7.9  Score=38.55  Aligned_cols=145  Identities=14%  Similarity=0.101  Sum_probs=96.6

Q ss_pred             ChhHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          412 MLNEALQLLHLLNGS-SCSPC-LITYNTLIDGLAK---------KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA  480 (577)
Q Consensus       412 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  480 (577)
                      ..+.|..+|.+.... ...|+ ...|..+..++..         ..+..+|.++-++..+.+ +-|......+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            456788888888722 23443 3344444333322         234567788888888765 45777777888877888


Q ss_pred             CCHHHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHH
Q 008105          481 DQVEEAVDLLKEIGKRGNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD---TVFSTIVKKVADDGMTEEA  556 (577)
Q Consensus       481 g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A  556 (577)
                      |+++.|..+|++....+  || ..+|......+..+|+.++|.+.+++..+  ..|..   .+....++.|+..+ .++|
T Consensus       352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~  426 (458)
T PRK11906        352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNN  426 (458)
T ss_pred             cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence            88999999999998854  44 44566666667789999999999999774  34543   33333444565554 6777


Q ss_pred             HHHHHH
Q 008105          557 YKLWQK  562 (577)
Q Consensus       557 ~~~~~~  562 (577)
                      ++++-+
T Consensus       427 ~~~~~~  432 (458)
T PRK11906        427 IKLYYK  432 (458)
T ss_pred             HHHHhh
Confidence            776644

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.98  E-value=1.3  Score=41.06  Aligned_cols=77  Identities=17%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 008105          189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-----KGCPPYLITYTIL  263 (577)
Q Consensus       189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l  263 (577)
                      ++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            45556666666666666666666666554 44666666677777777776666666666544     3566666666555


Q ss_pred             HHH
Q 008105          264 IEQ  266 (577)
Q Consensus       264 ~~~  266 (577)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.94  E-value=15  Score=39.25  Aligned_cols=440  Identities=15%  Similarity=0.145  Sum_probs=222.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCC--ChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH--
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMA-RRNQIP--DFHFCINLIRGLI-RIDRIEKASKVLQIMVMSGGVPDTI--  188 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~g~~~~~~--  188 (577)
                      .+...|..||.         .|++.++.+. +..++|  +..++..+...|. ...+++.|...+++.....-.++..  
T Consensus        28 ~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~   98 (608)
T PF10345_consen   28 EQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL   98 (608)
T ss_pred             hhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence            45567777774         4666677666 333344  3445555677766 5678999999998876543232222  


Q ss_pred             ---HHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCCCHHHHHHH-HHHHHhCCChHHHHHHHHHHHHCC---CCCCH
Q 008105          189 ---TYNMMVGGLCKRGQIRSAIALLDEMSVSG----CEPDVITYNTI-LRTMFDNGKFKQAIGFWKDQLRKG---CPPYL  257 (577)
Q Consensus       189 ---~~~~li~~~~~~g~~~~A~~~~~~~~~~g----~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~~~~~~---~~~~~  257 (577)
                         ....++..+.+.+... |...+++..+.-    ..+-...+..+ +..+...+++..|.+.++.+...-   ..|-.
T Consensus        99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen   99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence               1234567777766665 888888766431    11222233333 223333478999999888876532   23444


Q ss_pred             HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcC---------CCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHhh----
Q 008105          258 ITYTILIEQVC--KQCGIARAIEVLDDMAIEG---------CSPDIVTYNSLVNFS--CKQGKYDDAVLVINNLLS----  320 (577)
Q Consensus       258 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~----  320 (577)
                      ..+..++.+..  +.+..+++.+.++++....         ..|...+|..++..+  ...|+++.+...++++.+    
T Consensus       178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~  257 (608)
T PF10345_consen  178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDE  257 (608)
T ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            44445554433  4455677777777664321         123456666666554  466776676666555432    


Q ss_pred             ---CC----------C--C-----------CCHHHH---------HHHHHH--HHccCCHHHHHHHHHH-------HH-h
Q 008105          321 ---RG----------M--E-----------PNSITY---------NTLLHS--LGSRGCWDAVDKILDI-------MN-E  355 (577)
Q Consensus       321 ---~g----------~--~-----------p~~~~~---------~~ll~~--~~~~g~~~~a~~~~~~-------~~-~  355 (577)
                         ..          +  .           +....|         ..++.+  .+..+..+.+.+++++       .. .
T Consensus       258 ~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~  337 (608)
T PF10345_consen  258 IKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIK  337 (608)
T ss_pred             hhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhcc
Confidence               10          0  0           111111         112222  2233444455555443       33 1


Q ss_pred             CCCCC--C------HHHHHHHHHH---------HHHcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHH--HHhc
Q 008105          356 ASHSP--T------VFTYNILING---------LCKYGLVDRAINSFNQMVSKNC-QPD-----IVTYNTVLGA--LCKE  410 (577)
Q Consensus       356 ~~~~~--~------~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~-~~~-----~~~~~~li~~--~~~~  410 (577)
                      ....+  +      ...|...+..         .+-.+++..|...++.+.+..- .|+     ...+...+.+  +-..
T Consensus       338 ~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~  417 (608)
T PF10345_consen  338 SPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQST  417 (608)
T ss_pred             CCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHc
Confidence            11111  1      1122222222         2236889899999998876421 111     2222223322  3456


Q ss_pred             CChhHHHHHHH--------HHhhCCCCCCHHHHHHH--HHHHH--hcCCHHH--HHHHHHHHHHC-CCCC--CHHHHHHH
Q 008105          411 GMLNEALQLLH--------LLNGSSCSPCLITYNTL--IDGLA--KKGCMEK--AMVLYGQMMEN-GISP--DDITHRTL  473 (577)
Q Consensus       411 g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l--i~~~~--~~g~~~~--A~~~~~~m~~~-g~~p--~~~~~~~l  473 (577)
                      |+.+.|...|.        .....+...+...+..+  +-.+.  ......+  +.++++.+... .-.|  +..++..+
T Consensus       418 g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~  497 (608)
T PF10345_consen  418 GDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCL  497 (608)
T ss_pred             CCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHH
Confidence            99999999997        44455544444444332  11112  2222333  66777766431 1122  23334443


Q ss_pred             -HHHHHhcC--CHHHHHHHHHHHhh-C----CC-CccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--CHHHHH
Q 008105          474 -IWGFCRAD--QVEEAVDLLKEIGK-R----GN-KMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS-RYKP--DDTVFS  541 (577)
Q Consensus       474 -i~~~~~~g--~~~~A~~~~~~m~~-~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p--~~~~~~  541 (577)
                       +.++...-  ...++...+.+..+ .    +. ..-..+++.+...+. .|+..+..+........ ...|  ....|.
T Consensus       498 ~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~  576 (608)
T PF10345_consen  498 VLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWH  576 (608)
T ss_pred             HHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence             33333221  12344444443222 1    11 111222333333333 78888866666554321 1123  334452


Q ss_pred             -----HHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          542 -----TIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       542 -----~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                           .+.+.+...|+.++|.....+...
T Consensus       577 ~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  577 LVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                 344558889999999998877654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.87  E-value=0.4  Score=30.30  Aligned_cols=21  Identities=24%  Similarity=0.143  Sum_probs=7.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHh
Q 008105          194 VGGLCKRGQIRSAIALLDEMS  214 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~  214 (577)
                      ...|...|++++|.++|++..
T Consensus         8 a~~~~~~G~~~~A~~~~~~~l   28 (44)
T PF13428_consen    8 ARAYRRLGQPDEAERLLRRAL   28 (44)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            333333333333333333333

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.77  E-value=5.4  Score=33.76  Aligned_cols=134  Identities=16%  Similarity=0.148  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 008105          397 IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRTL-  473 (577)
Q Consensus       397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l-  473 (577)
                      ...|..-++ +.+.+..++|+.-|.++.+.|...-+. ...-........|+...|...|++.-...-.|-.. -...| 
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            334444333 355667777777777777765322111 11122233456777777777777776543223222 11111 


Q ss_pred             -HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          474 -IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       474 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                       ...+...|.+++.....+-+...+.+.....-..|.-+-.+.|++.+|.+.|..+...
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence             1223456777777666666655444444445556666666777777777777776653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.64  E-value=5.7  Score=33.65  Aligned_cols=124  Identities=10%  Similarity=0.068  Sum_probs=60.1

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHH--HHHHHhcCC
Q 008105          127 FCSRGKLTDASKLIDIMARRNQIPDFH-FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT-YNMM--VGGLCKRGQ  202 (577)
Q Consensus       127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l--i~~~~~~g~  202 (577)
                      +.+.++.++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.....|...- .-.|  .-.+...|.
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            345666777777777777665432111 111122334556666667777766655433333221 1111  112334555


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      +++.....+-+...+-+-....-..|.-+-.+.|++..|.+.|..+..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            655555555554333222233333444444555566666555555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.51  E-value=4.9  Score=38.25  Aligned_cols=128  Identities=12%  Similarity=0.099  Sum_probs=68.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCCHHHHH-
Q 008105          262 ILIEQVCKQCGIARAIEVLDDMAIEG-----CSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS----RGMEPNSITYN-  331 (577)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~-  331 (577)
                      ++..++...+.++++++.|+...+..     ......++..|...|.+..++++|.-+..+..+    .++.-=..-|. 
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            35555666666777777777665421     111224566777777777777777655544432    12211111222 


Q ss_pred             ----HHHHHHHccCCHHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105          332 ----TLLHSLGSRGCWDAVDKILDIMN----EASHSP-TVFTYNILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       332 ----~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                          .|.-++...|.+..|.+..++..    +.|..+ -....-.+.+.|...|+.+.|..-|++..
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence                22334556666666666655543    333221 12233455677777788777777766544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.32  E-value=8.6  Score=34.99  Aligned_cols=57  Identities=19%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          508 VIHGLCKSKKVDMAIQVLELMISSRYKPDD---TVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       508 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      +.+-|.+.|.+-.|..-+++|++. .+-+.   ..+-.+..+|.+.|..++|.+.-+-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            455667777777777777777763 33233   3344455667777777777766554433

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=92.27  E-value=18  Score=38.56  Aligned_cols=88  Identities=10%  Similarity=0.121  Sum_probs=37.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH---
Q 008105          299 VNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS-HSPTVFTYNILINGLCK---  374 (577)
Q Consensus       299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~---  374 (577)
                      ...+.-.|+++.|.+.+-+  ..+...+.+.+...+..|.-..-.+...   ..+.... -.|....+..||..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            3445567888888877766  1222344555554444433222111111   2221111 01122557777777776   


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 008105          375 YGLVDRAINSFNQMVSK  391 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~  391 (577)
                      ..++.+|++.|--+...
T Consensus       340 ~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  340 ITDPREALQYLYLICLF  356 (613)
T ss_dssp             TT-HHHHHHHHHGGGGS
T ss_pred             ccCHHHHHHHHHHHHHc
Confidence            35677777777666543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.24  E-value=8.1  Score=34.50  Aligned_cols=222  Identities=18%  Similarity=0.102  Sum_probs=126.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHccCCHHHHHH
Q 008105          271 CGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR-GMEPNSITYNTLLHSLGSRGCWDAVDK  348 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~  348 (577)
                      +....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            45555555555555442111 2455666666677777777777777666542 123344455555566666666777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008105          349 ILDIMNEASHSPTVFTYNILIN-GLCKYGLVDRAINSFNQMVSKNC--QPDIVTYNTVLGALCKEGMLNEALQLLHLLNG  425 (577)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  425 (577)
                      .+.........+ ......... .+...|+.+.|...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            777766543322 122222222 56677777777777777654211  11233333334445566777777777776666


Q ss_pred             CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          426 SSCSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       426 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      .. +. ....+..+...+...++++.|...+.......  |+ ...+..+...+...+..+++...+.+....
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            53 22 35566666667777777777777777776532  33 334444444444556677777777666653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.23  E-value=11  Score=36.01  Aligned_cols=127  Identities=13%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHH---
Q 008105          403 VLGALCKEGMLNEALQLLHLLNGSS-----CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME----NGISPDDITH---  470 (577)
Q Consensus       403 li~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~---  470 (577)
                      +..++...+.++++++.|+...+.-     .......+-.|...|.+..++++|.-+..+..+    .++..=..-|   
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            4444555555666666665443311     111223455666666666666666655554432    1111111112   


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHhh----CCCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          471 --RTLIWGFCRADQVEEAVDLLKEIGK----RGNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       471 --~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                        ..|.-++...|....|.+.-++..+    .|-.+ -.....++.+.|...|+.+.|..-++...
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence              2222344455555555555555433    22221 11223445555666666666666555554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.07  E-value=16  Score=37.48  Aligned_cols=374  Identities=11%  Similarity=0.043  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLI-RIDRIEKASKVLQIMVMS-GGV-PDTITYNMMVG  195 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~li~  195 (577)
                      .|.....-=.+-|..+.+.++|++.+.. ++-+...|...+..+. ..|+.+..+..|+..... |.. .....|...|.
T Consensus        81 yW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie  159 (577)
T KOG1258|consen   81 YWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIE  159 (577)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence            5666677778899999999999999884 6677778887776555 457888888999988765 322 34567888888


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH---hC------CChHHHHHHHHHHHHC---C-CCCCHHHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF---DN------GKFKQAIGFWKDQLRK---G-CPPYLITYTI  262 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~---~~------~~~~~A~~~~~~~~~~---~-~~~~~~~~~~  262 (577)
                      --..++++.....+++++.+.    ....++....-|.   +.      ...+++.++=......   . ..+.......
T Consensus       160 ~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~  235 (577)
T KOG1258|consen  160 FENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI  235 (577)
T ss_pred             HHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence            888889999999999999853    2223333332222   11      1223333222222110   0 0001111111


Q ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CC----CCCHHHHHHHH
Q 008105          263 LIEQVCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR---GM----EPNSITYNTLL  334 (577)
Q Consensus       263 l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~----~p~~~~~~~ll  334 (577)
                      -+..-.. .+..+++...+.+...           .--..+.......+....++.-.+.   .+    .++..+|..-+
T Consensus       236 ~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yL  304 (577)
T KOG1258|consen  236 GVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYL  304 (577)
T ss_pred             HHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHh
Confidence            1110000 0111111111111110           0011122222222333333333222   11    12344666666


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCC
Q 008105          335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ--PDIVTYNTVLGALCKEGM  412 (577)
Q Consensus       335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~  412 (577)
                      ..-.+.|+.+.+.-+|+...-- ...-...|-..+.-....|+.+-|..++....+-.++  |....+.+.+  .-..|+
T Consensus       305 df~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n  381 (577)
T KOG1258|consen  305 DFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGN  381 (577)
T ss_pred             hhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhcc
Confidence            6666777777777777665431 0111223333444444446666666666555443322  2222222222  223467


Q ss_pred             hhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCH
Q 008105          413 LNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMV---LYGQMMENGISPDDITHRTLIWG-----FCRADQV  483 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~---~~~~m~~~g~~p~~~~~~~li~~-----~~~~g~~  483 (577)
                      +..|..+++.+...-  |+.. .-..-+....+.|..+.+..   ++..... | .-+......+.--     +.-.++.
T Consensus       382 ~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  382 FDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             HHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCH
Confidence            777777777776653  3322 22222334445666666652   2222221 1 1111111111111     2224667


Q ss_pred             HHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105          484 EEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK  516 (577)
Q Consensus       484 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  516 (577)
                      +.|..++.++.+. .+++...|..+++.+...+
T Consensus       458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  458 DLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            7777777777664 2445566666666555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.91  E-value=15  Score=36.88  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=37.9

Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          226 NTILRTMFDNGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCKQCGIARAIEVLDDMAI  285 (577)
Q Consensus       226 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  285 (577)
                      ..+..++.+.|+.++|++.++++.+.... .+......|+..+...+.+.++..++.+..+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            44556666677777777777777654211 1334556677777777777777777766543

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.80  E-value=3.9  Score=34.28  Aligned_cols=63  Identities=21%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          433 ITYNTLIDGL---AKKGCMEKAMVLYGQMMENGISPDDITHR-TLIWGFCRADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       433 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~  497 (577)
                      .+.+.|+...   .+.++.+++..+++.+.-.  .|...... .-...+...|++.+|..+|+++....
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            3445555443   4678899999999998763  45533322 22344678899999999999987653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.74  E-value=2.1  Score=39.73  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSV-----SGCEPDVITYN  226 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~~~~~~~~  226 (577)
                      ..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+..     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3457778888888899999999999888876 55788899999999999999999988888764     58889888888


Q ss_pred             HHHHHHHh
Q 008105          227 TILRTMFD  234 (577)
Q Consensus       227 ~li~~~~~  234 (577)
                      .......+
T Consensus       232 ~y~~~~~~  239 (280)
T COG3629         232 LYEEILRQ  239 (280)
T ss_pred             HHHHHhcc
Confidence            77777433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.43  E-value=0.19  Score=30.17  Aligned_cols=25  Identities=12%  Similarity=0.294  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          540 FSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       540 ~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      |..|...|.+.|++++|++++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555555555555555555533

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.42  E-value=0.43  Score=28.58  Aligned_cols=25  Identities=12%  Similarity=0.146  Sum_probs=14.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMA  144 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~  144 (577)
                      |+.|...|.+.|++++|+++|++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5556666666666666666666633

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.42  E-value=13  Score=35.27  Aligned_cols=126  Identities=13%  Similarity=0.183  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--CC----ChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC---
Q 008105          205 SAIALLDEMSVSGCEPDVITYNTILRTMFD--NG----KFKQAIGFWKDQLRKGC---PPYLITYTILIEQVCKQCG---  272 (577)
Q Consensus       205 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~~----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---  272 (577)
                      +...+++.|.+.|+..+..+|-+.......  ..    ....|..+|+.|.+...   .++...+..++..  ...+   
T Consensus        80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~  157 (297)
T PF13170_consen   80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE  157 (297)
T ss_pred             HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence            344556666666666665554442222211  11    23455666666665431   2334444444432  2222   


Q ss_pred             -HHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhc-CC--HHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          273 -IARAIEVLDDMAIEGCSPDIV-TYNSLVNFSCKQ-GK--YDDAVLVINNLLSRGMEPNSITYNT  332 (577)
Q Consensus       273 -~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~~~~~m~~~g~~p~~~~~~~  332 (577)
                       .+.+...|+.+...|+..+.. -+.+-+-++... ..  ...+.++++.+.+.|+++....|..
T Consensus       158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence             234445555555555443321 111111111111 11  3345556666666666655554443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.20  E-value=14  Score=35.12  Aligned_cols=131  Identities=15%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCC--
Q 008105          379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCK--E----GMLNEALQLLHLLNGSSC---SPCLITYNTLIDGLAKKGC--  447 (577)
Q Consensus       379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~--  447 (577)
                      ++.+.+++.|.+.|+.-+..+|-+.......  .    .....|..+++.|++...   .++-.++..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3445666777777777666655543332222  1    134567778888877652   3444555555543  2333  


Q ss_pred             --HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCC--HHHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 008105          448 --MEKAMVLYGQMMENGISPDDI-THRTLIWGFCR-ADQ--VEEAVDLLKEIGKRGNKMRNSAYRLVIHG  511 (577)
Q Consensus       448 --~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~-~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~  511 (577)
                        .+.++.+|+.+.+.|+..+.. -+.+-+-++.. ...  ..++.++++.+.+.|+++....|..+.-.
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence              355677777777777655422 22222222222 111  45778888888888888777776655433

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.16  E-value=8.7  Score=32.70  Aligned_cols=133  Identities=12%  Similarity=0.128  Sum_probs=61.6

Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008105          209 LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC  288 (577)
Q Consensus       209 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  288 (577)
                      .+..+.+.+++|+...+..+++.+.+.|++....++    +..++-+|.......+-.+.  +....+.++=-+|.++  
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--   87 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--   87 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence            334444555566666666666666666655443332    33333444433333222111  1222233333333322  


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105          289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE  355 (577)
Q Consensus       289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  355 (577)
                        =...+..++..+...|++-+|+++.+.....    +......++.+..+.+|...-..+++-..+
T Consensus        88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              0013455566666777777777766654322    222223445555555555544444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.65  E-value=4.1  Score=35.32  Aligned_cols=95  Identities=14%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCccH----H
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGK---RGNKMRN----S  503 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~----~  503 (577)
                      ..+..+...|++.|+.++|.+.|.++.+....+.  ...+..++......|++..+...+.+...   .+-.++.    .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4566777778888888888888888777544443  33456677777777788777777776654   2211111    1


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          504 AYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       504 ~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      .|..+  .+...+++.+|.+.|-...
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHccC
Confidence            22222  2345788888888887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.57  E-value=0.85  Score=26.68  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .+|..+..++...|++++|+..+++.++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3455666666666666666666666666443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.46  E-value=0.91  Score=26.43  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      ..|..+...+...|++++|++.+++.++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3455666667777777777777777666443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.39  E-value=3.7  Score=35.63  Aligned_cols=96  Identities=13%  Similarity=-0.015  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 008105          468 ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISS---RYKPDDTVFST  542 (577)
Q Consensus       468 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~  542 (577)
                      ..+..+...|++.|+.++|.+.|.++.+....+.  ...+-.+|......|++..+...+.+....   +-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4678889999999999999999999988654443  456778899999999999999998887653   21222221111


Q ss_pred             HHH--HHHhcCCHHHHHHHHHHH
Q 008105          543 IVK--KVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       543 l~~--~~~~~g~~~~A~~~~~~~  563 (577)
                      ...  .+...+++.+|-+.|-..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence            222  345678888887766443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.31  E-value=30  Score=37.44  Aligned_cols=225  Identities=14%  Similarity=0.039  Sum_probs=123.0

Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHH-HHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 008105          338 GSRGCWDAVDKILDIMNEASHSPTV-------FTYNILIN-GLCKYGLVDRAINSFNQMVSK----NCQPDIVTYNTVLG  405 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~  405 (577)
                      ....++++|..+..++...-..|+.       ..|+.+-. .....|+++.|.++-+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            4577899999998887654322222       13333322 233468899999988877764    22345566777777


Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCHH---HHHHHH--HHHHhcCCH--HHHHHHHHHHHHCC---C---CCCHHHHHH
Q 008105          406 ALCKEGMLNEALQLLHLLNGSSCSPCLI---TYNTLI--DGLAKKGCM--EKAMVLYGQMMENG---I---SPDDITHRT  472 (577)
Q Consensus       406 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li--~~~~~~g~~--~~A~~~~~~m~~~g---~---~p~~~~~~~  472 (577)
                      +..-.|++++|..+..+..+..-.-+..   .|..+.  ..+...|+.  .+....|.......   .   .+-..+...
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            7888899999998887665432122333   333332  234456632  23333333332210   0   122334555


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHHhhCCCCccHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHH
Q 008105          473 LIWGFCRA-DQVEEAVDLLKEIGKRGNKMRNSAY--RLVIHGLCKSKKVDMAIQVLELMISSRY----KPDDTVFSTIVK  545 (577)
Q Consensus       473 li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l~~  545 (577)
                      +..++.+. +...++..-++--......|-...+  ..|+......|++++|...++++.....    .++-..-...++
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~  665 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK  665 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence            55665552 1222222222222222222222222  3677888899999999999999876322    223222233333


Q ss_pred             --HHHhcCCHHHHHHHHHH
Q 008105          546 --KVADDGMTEEAYKLWQK  562 (577)
Q Consensus       546 --~~~~~g~~~~A~~~~~~  562 (577)
                        .....|+.+++.....+
T Consensus       666 ~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         666 LILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHhcccCCHHHHHHHHHh
Confidence              34567888877766555

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.29  E-value=26  Score=36.82  Aligned_cols=178  Identities=14%  Similarity=0.093  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhC
Q 008105          168 IEKASKVLQIMVMSGGVPDTITYNMMVGG-----LCKRGQIRSAIALLDEMSV-------SGCEPDVITYNTILRTMFDN  235 (577)
Q Consensus       168 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~  235 (577)
                      ...|.++++...+.|   +...-..+..+     +....+.+.|...|+.+..       .|   +......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            456888888887776   23332222222     3355688888888888765       33   333455566666553


Q ss_pred             C-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hc
Q 008105          236 G-----KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK-QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSC----KQ  305 (577)
Q Consensus       236 ~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~  305 (577)
                      .     +.+.|..+|.+..+.| .|+.......+..... ..+...|.++|......|..   ..+-.+...|.    -.
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence            2     5666788877777665 3333333222221111 23567777888777777632   22222221111    22


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105          306 GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS  357 (577)
Q Consensus       306 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  357 (577)
                      .+...|..++.+.-+.| .|...--...+..+.. +..+.+.-.+..+.+.+
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            35667777777776666 2222222222223333 55555555555555544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.29  E-value=9.9  Score=33.00  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCccHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          475 WGFCRADQVEEAVDLLKEIGKRGNKMRNSAY-----RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD  549 (577)
Q Consensus       475 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  549 (577)
                      ..+..+|++++|..-++.....   |....+     -.+.+.....|.+|+|...++...+.++  .......-.+.+..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHH
Confidence            4455667777777777665542   111222     2244455667777777777766553322  22233344566777


Q ss_pred             cCCHHHHHHHHHHHHHcCCC
Q 008105          550 DGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       550 ~g~~~~A~~~~~~~~~~~~~  569 (577)
                      .|+.++|+.-|++.++.+..
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         172 KGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             cCchHHHHHHHHHHHHccCC
Confidence            77777777777777766533

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.18  E-value=7  Score=32.26  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=38.3

Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          433 ITYNTLIDGL---AKKGCMEKAMVLYGQMMENGISPD---DITHRTLIWGFCRADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       433 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  497 (577)
                      ...+.|++..   ...++.+++..+++.|.-.  .|+   ..++..  ..+...|++++|.++|++..+.+
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence            3444554443   3577888888888888753  343   333333  33567788888888888887654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=90.00  E-value=23  Score=37.41  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=17.1

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDI  142 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~  142 (577)
                      ++..|+ .+..+.-.|.++.|.+++..
T Consensus       148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~  173 (566)
T PF07575_consen  148 DPDFWD-YVQRLVLRGLFDQARQLLRL  173 (566)
T ss_dssp             SHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred             chhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence            366666 57777777888888887743

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.29  E-value=32  Score=36.25  Aligned_cols=179  Identities=16%  Similarity=0.100  Sum_probs=114.9

Q ss_pred             hhhHHHHHHHHHHcCCCCChhhHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008105          133 LTDASKLIDIMARRNQIPDFHFCINLIRG-----LIRIDRIEKASKVLQIMVM-------SGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       133 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~  200 (577)
                      ...|..+++.....|   +......+...     +....+.+.|..+|+.+.+       .|   .......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            567899999888876   33333333333     3355789999999999977       45   334566677777764


Q ss_pred             C-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----Hc
Q 008105          201 G-----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFD-NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVC----KQ  270 (577)
Q Consensus       201 g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  270 (577)
                      .     +.+.|..++.+..+.| .|+....-..+.-... ..+...|.++|......|   ...++-.+...|.    -.
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence            3     6678999999998887 5565544333333322 356789999999999888   3333333333222    22


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 008105          271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGM  323 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  323 (577)
                      .+...|..++.+....| .|....-...+..+.. +..+.+...+..+.+.|.
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            46888999999998887 3332222233334444 777777776666666553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.19  E-value=26  Score=35.19  Aligned_cols=241  Identities=12%  Similarity=0.105  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC------CHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCHHHH
Q 008105          310 DAVLVINNLLSRGMEPNSITYNTLLHSLGSRG------CWDAVDKILDIMNEAS-H-SPTVFTYNILINGLCKYGLVDRA  381 (577)
Q Consensus       310 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A  381 (577)
                      ...++|++..+.  -|+...|+..|..|...-      .+.....+++...+.+ . +.....|..+.-.++..+...++
T Consensus       300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~  377 (568)
T KOG2396|consen  300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV  377 (568)
T ss_pred             HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence            334556655543  445555666665554322      2333444444444332 1 23344555555555555443322


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHH-HH-HHH
Q 008105          382 INSFNQMVSKNCQPDIVTYNTVLGALCKEG-MLNE-ALQLLHLLNGSSCSPCLITYNTLIDGLAKKGC-MEKA-MV-LYG  456 (577)
Q Consensus       382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A-~~-~~~  456 (577)
                         -..+...++..+...|-.-+....+.. +++- -..++......-..+....|+...     .++ .... .. ++.
T Consensus       378 ---a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~  449 (568)
T KOG2396|consen  378 ---AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS  449 (568)
T ss_pred             ---HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence               222222223445666655555444221 2221 122233333332233344444443     122 1111 11 122


Q ss_pred             HHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh--cCChHHHHHHHHHHHH-CC
Q 008105          457 QMMENGISPDDITH-RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK--SKKVDMAIQVLELMIS-SR  532 (577)
Q Consensus       457 ~m~~~g~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~-~~  532 (577)
                      ..... ..|+..++ +.++.-+.+.|-.++|...+..+... .+|....|..+|..-..  .-+..-+.++++.|.. .|
T Consensus       450 a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg  527 (568)
T KOG2396|consen  450 ALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG  527 (568)
T ss_pred             HHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence            22222 24565554 56777788889999999999998875 35677778777764321  2237888999999886 35


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          533 YKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       533 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                        .|+..|.-.+.--...|..+.+-.++-+..
T Consensus       528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~  557 (568)
T KOG2396|consen  528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAM  557 (568)
T ss_pred             --CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence              788888888877778898887777655443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.19  E-value=42  Score=37.59  Aligned_cols=115  Identities=22%  Similarity=0.238  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHH----HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 008105          394 QPDIVTYNTVLGA----LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-  468 (577)
Q Consensus       394 ~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-  468 (577)
                      .|+...+.....+    +.....+++|--.|+..-+.         .--+.+|-.+|+|.+|..+..++..   ..|.. 
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~  999 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELV  999 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence            3455444444433    33455666665555543221         2235566667777777777666542   11221 


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          469 -THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       469 -~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                       +-..|+.-+...++.-+|-++..+....   |     ...+..|++...+++|.++....
T Consensus      1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence             2245666667777777777777666542   1     12345566777778877776654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.15  E-value=34  Score=36.41  Aligned_cols=73  Identities=11%  Similarity=0.107  Sum_probs=36.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEP---DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ  270 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (577)
                      |+-+.+.+.+++|+++-+.....  .|   -...+...|..+...|++++|-...-.|...    +..-|..-+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            34455556666666655444322  22   2344555666666666666666655555433    334444444444443


Q ss_pred             CC
Q 008105          271 CG  272 (577)
Q Consensus       271 g~  272 (577)
                      ++
T Consensus       437 ~~  438 (846)
T KOG2066|consen  437 DQ  438 (846)
T ss_pred             cc
Confidence            33

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.02  E-value=17  Score=32.82  Aligned_cols=50  Identities=16%  Similarity=0.006  Sum_probs=21.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105          368 LINGLCKYGLVDRAINSFNQMVSK---NCQPDIVTYNTVLGALCKEGMLNEALQ  418 (577)
Q Consensus       368 li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~  418 (577)
                      .|-.|.-..++..|...++.-.+.   .-+.+..+...|+.+|- .|+.+++.+
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k  248 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK  248 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence            333444445555555555553221   11223344444444442 344444433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.64  E-value=20  Score=33.23  Aligned_cols=58  Identities=14%  Similarity=0.103  Sum_probs=33.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          471 RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       471 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      +.....|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.|.+.++++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            334455566666666666666665543 2355556666666666666555555555553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.55  E-value=14  Score=31.40  Aligned_cols=133  Identities=13%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105          173 KVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       173 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~  252 (577)
                      +....+.+.+++|+...+..+++.+.+.|++.....    +.+.++-+|.......+-.+.  +.+..+.++--+|..+ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence            445555566677777777777777777776554433    333444455444443332222  1223333333333322 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL  319 (577)
Q Consensus       253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  319 (577)
                         =...+..++..+...|++-+|.++.+.....    +......++.+..+.++...=..+++-..
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               0113455566677777777777777665322    22223344555555555444444444433

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.19  E-value=2  Score=32.21  Aligned_cols=63  Identities=10%  Similarity=0.095  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +.=++.+-++.+...++.|++......+++|.+.+++..|.++++-...+ ...+..+|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            34456666666666778888888888888888888888888888876642 2224556666654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.17  E-value=8.3  Score=38.18  Aligned_cols=90  Identities=16%  Similarity=0.255  Sum_probs=40.8

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  557 (577)
                      ...|.++.+...+....+. +.....+..++++...+.|++++|...-+.|+...++ ++++.......-...|-++++.
T Consensus       334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~  411 (831)
T PRK15180        334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY  411 (831)
T ss_pred             HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence            3445555555554443321 1123334455555555555555555555555543322 2333322222333445555555


Q ss_pred             HHHHHHHHcCCC
Q 008105          558 KLWQKLIEWKVF  569 (577)
Q Consensus       558 ~~~~~~~~~~~~  569 (577)
                      -.|+++...+++
T Consensus       412 ~~wk~~~~~~~~  423 (831)
T PRK15180        412 HYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHhccCCh
Confidence            555555544433

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.04  E-value=5.6  Score=30.31  Aligned_cols=60  Identities=10%  Similarity=0.108  Sum_probs=37.6

Q ss_pred             HHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          485 EAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       485 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +..+-++.+...++.|.+......+++|.+.+++..|.++++-...+ ..+...+|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            45555666666777888888888888888888888888888877642 2233336666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK09687 putative lyase; Provisional

Probab=87.64  E-value=25  Score=33.14  Aligned_cols=232  Identities=16%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHhCCCCCCHHHH
Q 008105          290 PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW----DAVDKILDIMNEASHSPTVFTY  365 (577)
Q Consensus       290 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~  365 (577)
                      +|.......+.++...|.. ++...+..+..   .+|...-...+.+++..|+.    +++...+..+...  .++..+-
T Consensus        35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR  108 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR  108 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence            4555555566666655542 23333333332   22444444445555555542    3444555444222  2444444


Q ss_pred             HHHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          366 NILINGLCKYGL-----VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID  440 (577)
Q Consensus       366 ~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  440 (577)
                      ...+.++...+.     ...+...+.....   .++..+-...+.++.+.++ +++...+-.+.+.   ++...-...+.
T Consensus       109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~  181 (280)
T PRK09687        109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF  181 (280)
T ss_pred             HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence            444444444322     1223333333222   2244444555555555554 3344444444332   23333333444


Q ss_pred             HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105          441 GLAKKG-CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD  519 (577)
Q Consensus       441 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  519 (577)
                      ++.+.+ +...+...+..+..   .+|...-...+.++.+.|+ .++...+-+..+.+.     .....+.++...|.. 
T Consensus       182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-  251 (280)
T PRK09687        182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-  251 (280)
T ss_pred             HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-
Confidence            444332 12344444444443   2455555555555555555 334444444433221     122345555555553 


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          520 MAIQVLELMISSRYKPDDTVFSTIVKK  546 (577)
Q Consensus       520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~  546 (577)
                      +|...+.++.+.  .||..+-...+.+
T Consensus       252 ~a~p~L~~l~~~--~~d~~v~~~a~~a  276 (280)
T PRK09687        252 TLLPVLDTLLYK--FDDNEIITKAIDK  276 (280)
T ss_pred             hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence            455555555532  2344444443333

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=87.52  E-value=44  Score=35.73  Aligned_cols=227  Identities=13%  Similarity=0.130  Sum_probs=95.5

Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---c
Q 008105          335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN-CQPDIVTYNTVLGALCK---E  410 (577)
Q Consensus       335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~---~  410 (577)
                      ..+.-.|+++.|.+.+-..  .....+.+++...+..|.-.+-.+...   ..+.... -.|....+..||..|.+   .
T Consensus       266 ~~LlLtgqFE~AI~~L~~~--~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~  340 (613)
T PF04097_consen  266 QVLLLTGQFEAAIEFLYRN--EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI  340 (613)
T ss_dssp             HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred             HHHHHHhhHHHHHHHHHhh--ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence            3445689999999988772  223345555555554433222111111   3333221 01222668888988886   4


Q ss_pred             CChhHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHhcCCHHHHH-----------HHHHHHHH-CCCCC-CHHH---HHHH
Q 008105          411 GMLNEALQLLHLLNGSSCSPCLITYNTLI-DGLAKKGCMEKAM-----------VLYGQMME-NGISP-DDIT---HRTL  473 (577)
Q Consensus       411 g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~-----------~~~~~m~~-~g~~p-~~~~---~~~l  473 (577)
                      .+..+|.+.+-.+....-+.....+...+ ......++++.-+           -++++-.+ .++.. +...   ....
T Consensus       341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~  420 (613)
T PF04097_consen  341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA  420 (613)
T ss_dssp             T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence            67888998888776644222222222222 2222333222211           11111000 01111 2222   2233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH-HHHHhcCC-----------hHHHHHHHHHHHHCC-----CCC-
Q 008105          474 IWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI-HGLCKSKK-----------VDMAIQVLELMISSR-----YKP-  535 (577)
Q Consensus       474 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~-----------~~~A~~~~~~m~~~~-----~~p-  535 (577)
                      ..-+...|++++|..+|+-..+.+  .-....+..+ .+......           ...|..+.+.....+     +.+ 
T Consensus       421 A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~  498 (613)
T PF04097_consen  421 AREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRK  498 (613)
T ss_dssp             HHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHH
Confidence            344667888888888887765421  0112222222 22222222           334555555443321     111 


Q ss_pred             CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105          536 DDTVFSTIVK-----KVADDGMTEEAYKLWQKLIEWKVFEK  571 (577)
Q Consensus       536 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~  571 (577)
                      +..++..|++     .+...|++++|.+.++   +.++.|.
T Consensus       499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~---~L~liP~  536 (613)
T PF04097_consen  499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIE---KLDLIPL  536 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HTT-S-S
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hCCCCCC
Confidence            2445555544     3578899999976655   4556664

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.42  E-value=30  Score=33.78  Aligned_cols=66  Identities=17%  Similarity=0.084  Sum_probs=47.3

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP---DDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ....+|..++..+.+.|.++.|...+.++...+...   ++.....-+......|+..+|...+++...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345678888888889999999999888887643111   333444445566677888889888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.40  E-value=0.77  Score=27.09  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=9.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHH
Q 008105          186 DTITYNMMVGGLCKRGQIRSA  206 (577)
Q Consensus       186 ~~~~~~~li~~~~~~g~~~~A  206 (577)
                      +...|+.+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            334444444444444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.06  E-value=7  Score=39.88  Aligned_cols=45  Identities=16%  Similarity=0.217  Sum_probs=23.3

Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQ  248 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~  248 (577)
                      .+.|+++.|.++..+..      +..-|..|.++..+.+++..|.+.|.+.
T Consensus       648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            34555555555443332      4445555555555555555555555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.89  E-value=18  Score=30.52  Aligned_cols=50  Identities=20%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYN-TILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      +.++.+++..+++-+...  .|...... .-...+...|++.+|+.+|+++..
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344555555555555433  23222211 112223445555555555555443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.79  E-value=0.9  Score=26.79  Aligned_cols=22  Identities=18%  Similarity=0.052  Sum_probs=12.3

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKAS  172 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~  172 (577)
                      |..+|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            5555555555555555555553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.78  E-value=7.4  Score=34.04  Aligned_cols=78  Identities=12%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHH
Q 008105          478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS---RYKPDDTVFSTIVKKVADDGMTE  554 (577)
Q Consensus       478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~  554 (577)
                      .+.|+ ++|.+.|-.+...+.--++.....+..-| ...+.++++.++-+.++.   +-.+|+..+.+|+..+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34444 55666666666655443444444444333 355777777777776652   33667777777777777777777


Q ss_pred             HHH
Q 008105          555 EAY  557 (577)
Q Consensus       555 ~A~  557 (577)
                      .|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            663

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.23  E-value=13  Score=34.76  Aligned_cols=48  Identities=15%  Similarity=0.196  Sum_probs=25.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 008105          377 LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLN  424 (577)
Q Consensus       377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  424 (577)
                      ++++++.++..=++-|+-||.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555444443

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.99  E-value=6.6  Score=29.58  Aligned_cols=46  Identities=13%  Similarity=0.134  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      =++.+-++.+....+.|++....+.+.+|.+-.++.-|.++|+-+.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455555555555666666666777777777777777777776655

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.54  E-value=12  Score=38.25  Aligned_cols=149  Identities=16%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008105          340 RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQL  419 (577)
Q Consensus       340 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  419 (577)
                      .|+++.|..++..+.       ...-+.+...+.+.|..++|+++-         +|+.-.   .....+.|+++.|.++
T Consensus       599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~l  659 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDL  659 (794)
T ss_pred             hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHH
Confidence            455555554433332       223455566666677666665442         222111   2234466788888777


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 008105          420 LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNK  499 (577)
Q Consensus       420 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  499 (577)
                      ..+..      +..-|..|.++....+++..|.+.|.+..+         |..|+-.+...|+-+....+-....+.|. 
T Consensus       660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-  723 (794)
T KOG0276|consen  660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-  723 (794)
T ss_pred             HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence            65543      456788888888888888888888876654         45666667777776665555555555542 


Q ss_pred             ccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          500 MRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       500 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                      .|.     ..-+|...|+++++.+++.+-
T Consensus       724 ~N~-----AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  724 NNL-----AFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence            122     233566678888887777654

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.52  E-value=10  Score=35.40  Aligned_cols=103  Identities=19%  Similarity=0.229  Sum_probs=65.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105          182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG---CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  258 (577)
                      |.+....+-..++..-....+++.+...+-++...-   ..|+. +-.++++.+. .-+.++++.++..=++-|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            444455555666666566677777777776665320   11111 1112222222 335667887777777788888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          259 TYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      +++.+++.+.+.+++.+|.++.-.|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888888888888888888777666544

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=85.27  E-value=41  Score=35.56  Aligned_cols=60  Identities=8%  Similarity=0.107  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF-HFCINLIRGLIRIDRIEKASKVLQIM  178 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~  178 (577)
                      ..-..|+.-.-+.. .....+...++.....++.. ..|-..+..+.-.|.+++|.+++...
T Consensus       114 ~v~~~Ll~WvNr~~-~~~~~~~~~~vl~~~~p~~~~p~FW~~v~~lvlrG~~~~a~~lL~~~  174 (566)
T PF07575_consen  114 PVPEQLLDWVNRFH-FPPSEELAEEVLSSEPPYEHDPDFWDYVQRLVLRGLFDQARQLLRLH  174 (566)
T ss_dssp             HHHHHHHHHHHTTS---SHHHHHTTSCSS-HSCSGSHHHHHHHHHHHHTT-HHHHHHHH-TT
T ss_pred             chHHHHHHHHHHhC-CCCchhHHHHHhccCCCCccchhHHHHHHHHHHcCCHHHHHHHHHhc
Confidence            34555665553332 22233333333332223333 44555788889999999999998543

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.80  E-value=2.2  Score=26.12  Aligned_cols=28  Identities=14%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMAR  145 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~  145 (577)
                      .+++.|...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566677777777777777777766554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.79  E-value=2.6  Score=24.49  Aligned_cols=28  Identities=7%  Similarity=0.062  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARR  146 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~  146 (577)
                      +|..+...|...|++++|+..|++.++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4556666666666666666666666553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.52  E-value=9.5  Score=33.20  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=62.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105          440 DGLAKKGCMEKAMVLYGQMMENGISPD-----DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK  514 (577)
Q Consensus       440 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  514 (577)
                      .-+...|++++|..-|.+.++.- ++.     .+.|..-..++.+.+.++.|++-..+..+.+.. .......-..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence            45678899999999999888742 222     234555556677888888888888877775432 22333344567888


Q ss_pred             cCChHHHHHHHHHHHHC
Q 008105          515 SKKVDMAIQVLELMISS  531 (577)
Q Consensus       515 ~g~~~~A~~~~~~m~~~  531 (577)
                      ...+++|++-|+++++.
T Consensus       181 ~ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILES  197 (271)
T ss_pred             hhhHHHHHHHHHHHHHh
Confidence            88899999999888864

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.75  E-value=16  Score=32.00  Aligned_cols=79  Identities=9%  Similarity=-0.077  Sum_probs=47.2

Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK---GCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      ..+.|+ ++|++.|-.+...+.--++.....|...|. ..+.++++.++.+.++.   +-.+|+..+.+|+..+.+.|+.
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            334444 566666666666554444444444444443 56677777777666553   2256677777777777777777


Q ss_pred             HHHH
Q 008105          274 ARAI  277 (577)
Q Consensus       274 ~~A~  277 (577)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            7664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.53  E-value=3.1  Score=25.42  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          538 TVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566777777777777777777777654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=83.20  E-value=48  Score=32.36  Aligned_cols=68  Identities=18%  Similarity=0.064  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105          394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP---CLITYNTLIDGLAKKGCMEKAMVLYGQMMEN  461 (577)
Q Consensus       394 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  461 (577)
                      .....+|..+...+-+.|.++.|...+..+...+...   .......-+...-..|+..+|...+++..+.
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456678889999999999999999999888754211   3344445566677889999999999988873

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.92  E-value=19  Score=27.55  Aligned_cols=45  Identities=13%  Similarity=0.153  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ..+-+..+....+.|++....+.+.+|.+-.++.-|.++|+-+..
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            333444444445555666666666666666666666666655543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=81.85  E-value=4  Score=23.54  Aligned_cols=28  Identities=11%  Similarity=0.081  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARR  146 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~  146 (577)
                      .|..+...|.+.|++++|++.|++.++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3445555555666666666666555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK09687 putative lyase; Provisional

Probab=81.77  E-value=47  Score=31.32  Aligned_cols=78  Identities=10%  Similarity=0.088  Sum_probs=32.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHhhCCCCCCHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI----RSAIALLDEMSVSGCEPDVITYN  226 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~  226 (577)
                      |.......+.++...|. +++...+..+.+   .+|...-...+.++...|+.    +++...+..+...  .++..+-.
T Consensus        36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~  109 (280)
T PRK09687         36 NSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA  109 (280)
T ss_pred             CHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence            44444444444444443 222222333322   22444444445555555542    3444555444222  34444444


Q ss_pred             HHHHHHHh
Q 008105          227 TILRTMFD  234 (577)
Q Consensus       227 ~li~~~~~  234 (577)
                      ..+.++..
T Consensus       110 ~A~~aLG~  117 (280)
T PRK09687        110 SAINATGH  117 (280)
T ss_pred             HHHHHHhc
Confidence            44444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=81.36  E-value=3.3  Score=24.00  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          538 TVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .+|..+...+...|++++|.+.+++.++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566667777777888888877777776443

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=81.35  E-value=3.3  Score=23.69  Aligned_cols=27  Identities=22%  Similarity=0.241  Sum_probs=15.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          542 TIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       542 ~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .+..++.+.|++++|.+.++++++.-|
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            344555556666666666666665433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.96  E-value=13  Score=32.93  Aligned_cols=55  Identities=20%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEM  213 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  213 (577)
                      .++.+.+.+.+.+|+...++-++.. +.|...-..+++.||-.|++++|..-++-.
T Consensus         7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            3444445555555555555444443 233444444555555555555555444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	577
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 88.7 bits (218), Expect = 2e-18
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 4/218 (1%)

Query: 349 ILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALC 408
           + D   +A  SP       L+        +D       Q                     
Sbjct: 79  LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138

Query: 409 KEGMLNEALQLLHLLNG---SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP 465
               L  A  LL + +G         L  YN ++ G A++G  ++ + +   + + G++P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198

Query: 466 DDITHRTLIWGFCRADQVEEAV-DLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQV 524
           D +++   +    R DQ    +   L+++ + G K++     +++    ++  +    +V
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258

Query: 525 LELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQK 562
                     P     S +++ V          KL   
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLP 296

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.4 bits (212), Expect = 1e-17
 Identities = 23/203 (11%), Positives = 57/203 (28%), Gaps = 4/203 (1%)

Query: 325 PNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRA--- 381
           P       LL     +   D         ++A  S                  +  A   
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 382 INSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG 441
           +   +    K     +  YN V+    ++G   E + +L ++  +  +P L++Y   +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 442 LAKKGCMEKAMVLY-GQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM 500
           + ++      +     QM + G+    +    L+    RA  ++    +           
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Query: 501 RNSAYRLVIHGLCKSKKVDMAIQ 523
                  ++  +          +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPK 292

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.5 bits (207), Expect = 4e-17
 Identities = 51/357 (14%), Positives = 116/357 (32%), Gaps = 16/357 (4%)

Query: 77  EWSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEKTNNKILQNFCSRGKLTDA 136
           E+ + +  L V  +L    ++K+        +        E+   ++LQ    +  L   
Sbjct: 56  EFKALTRRLQVEPRL----LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVE 111

Query: 137 SKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQI---MVMSGGVPDTITYNMM 193
                  ++          +   +  +  D++  A  +L +         +     YN +
Sbjct: 112 QAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171

Query: 194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIG-FWKDQLRKG 252
           + G  ++G  +  + +L  +  +G  PD+++Y   L+ M    +    I    +   ++G
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231

Query: 253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAV 312
                +   +L+ +  +   +    +V    ++    P  V  + L+     +       
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY- 290

Query: 313 LVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGL 372
                L         +    L   L SR C  +V+K      E  H+    T   L +  
Sbjct: 291 ---PKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR--KTLKTLRDQW 345

Query: 373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS 429
                + RA+      + +       +    L  L +  ++   LQ+L  L     S
Sbjct: 346 --EKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGES 400

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 83.7 bits (205), Expect = 7e-17
 Identities = 20/218 (9%), Positives = 52/218 (23%), Gaps = 4/218 (1%)

Query: 289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDK 348
           SP       L+  +  +   D             +                         
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 349 ILDI---MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG 405
           +L +     +     T+  YN ++ G  + G     +     +      PD+++Y   L 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 406 ALCKEGMLNEALQ-LLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS 464
            + ++      ++  L  ++        +    L+    +   ++    +          
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

Query: 465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRN 502
           P  +    L+      D       L   +         
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 44/370 (11%), Positives = 96/370 (25%), Gaps = 43/370 (11%)

Query: 186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGF 244
             +      GG      ++  + +L +    G  P  V+   +           ++ +  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPV 128

Query: 245 WKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK 304
              Q     P  ++              +   + VL   A       +V   S       
Sbjct: 129 L-CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLC-QAHGLTPEQVVAIASNGGGKQA 186

Query: 305 QGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGSRGCWD----AVDKILDIMNEASHS 359
                  + V+      G+ P  +    +      +          + +   +      +
Sbjct: 187 LETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL------T 238

Query: 360 PT-VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD-IVTYNTVLGALCKEGMLNEAL 417
           P  V        G      V R +    Q       P  +V   +  G       +   L
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNSGGKQALETVQRLL 296

Query: 418 QLL---HLLNGSSCSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRT 472
            +L   H L      P  ++   +   G      +++ + +  Q     ++P  +    +
Sbjct: 297 PVLCQAHGLT-----PQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIAS 349

Query: 473 LIWGFCRADQVEEAV-DLLKEIGKRGNKMRNSAYRLVIHGLCKS--KKVDMAIQVLELMI 529
              G    + V+  +  L +  G            +  +G  K   + V   + VL    
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLT----PEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 530 SSRYKPDDTV 539
                P+  V
Sbjct: 406 --GLTPEQVV 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 83/629 (13%), Positives = 178/629 (28%), Gaps = 237/629 (37%)

Query: 3   YTVVPPNSIIELH-CLPNLQWCSRQVSLQHGVVNNHRTQFYSQLRDLGAGRNVSLKCRGL 61
           Y V      ++L   L  L+  ++ V +  GV              LG+G+        +
Sbjct: 129 YNVSRLQPYLKLRQALLELR-PAKNVLI-DGV--------------LGSGKTW------V 166

Query: 62  PGNVCIDRVNEVDQDE---WSSESHVLAVNKKLRGLTITKKSHDPSLPSSDGPFVENDEK 118
             +VC+    +   D    W               L +   +   ++       +E  +K
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW---------------LNLKNCNSPETV-------LEMLQK 204

Query: 119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-----RIEKA-- 171
              +I  N+ SR   +   KL  I + + ++            L+ +      +   A  
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 172 --SKVL------QIM-VMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV 222
              K+L      Q+   +S      I+ +     L    +++S +    +        +V
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREV 322

Query: 223 ITYNTILRTMFDNGKF-KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD 281
           +T N    ++    +  +  +  W D  +           +  +++     I  ++ VL+
Sbjct: 323 LTTNPRRLSII--AESIRDGLATW-DNWKH----------VNCDKLTTI--IESSLNVLE 367

Query: 282 DMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS-ITYNTL--LHSLG 338
                   P              +  +D   L +         P++ I    L  +    
Sbjct: 368 --------PAEY-----------RKMFDR--LSV-------FPPSAHIPTILLSLI---- 395

Query: 339 SRGCWDAVDK--ILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD 396
               W  V K  ++ ++N+                L KY LV++             QP 
Sbjct: 396 ----WFDVIKSDVMVVVNK----------------LHKYSLVEK-------------QPK 422

Query: 397 IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG 456
             T  ++     +  +  E    LH               +++D        +       
Sbjct: 423 ESTI-SIPSIYLELKVKLENEYALH--------------RSIVDHYNIPKTFDS------ 461

Query: 457 QMMENGISPDDIT---------HRTLIWGFCRADQVEEAVDLLKEI----GKRGNKMRNS 503
               + + P  +          H          +  E  + L + +         K+R+ 
Sbjct: 462 ----DDLIPPYLDQYFYSHIGHH------LKNIEHPER-MTLFRMVFLDFRFLEQKIRHD 510

Query: 504 AYRLVIHGLCKSKKVDMAIQVLELMISSRYK----PDDTVFSTIVKKVAD---------- 549
           +          S  +   +Q L+      YK     +D  +  +V  + D          
Sbjct: 511 ST-----AWNASGSILNTLQQLKF-----YKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 550 ----------------DGMTEEAYKLWQK 562
                           + + EEA+K  Q+
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 40/197 (20%), Positives = 78/197 (39%), Gaps = 27/197 (13%)

Query: 233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG-IARAIEVLDDMAIEGCSPD 291
           +  G F+ A      QL +  P       +L   +  QC  + R+      +AI+  +P 
Sbjct: 10  YQAGDFEAAERHC-MQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFST-LAIK-QNPL 65

Query: 292 IV-TYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGSRGCWD-AV-- 346
           +   Y++L N   ++G+  +A+    + L   ++P+ I  Y  L  +L + G  + AV  
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 347 -DKILDIMNEASHSPTVF-TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVT--YNT 402
               L        +P ++   + L N L   G ++ A   + + +     P+      N 
Sbjct: 124 YVSALQY------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSN- 174

Query: 403 VLG-ALCKEGMLNEALQ 418
            LG     +G +  A+ 
Sbjct: 175 -LGCVFNAQGEIWLAIH 190

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 58/403 (14%), Positives = 121/403 (30%), Gaps = 60/403 (14%)

Query: 153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLD- 211
           HF  NL+ G   +D  E      +    +     T+  N++      +GQ  +A+  L  
Sbjct: 19  HFTWNLMEGENSLDDFEDKVF-YRTEFQNREFKATM-CNLLAYLKHLKGQNEAALECLRK 76

Query: 212 -EMSVSGCEPD------VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILI 264
            E  +     D      ++T+       +  G+      +  D+++  C  +   Y I  
Sbjct: 77  AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV-DKVKHVCEKFSSPYRIES 135

Query: 265 EQVCKQCGIA----------RAIEVLDDMAIEGCSPDIVTYNSLVN---FSCKQGKYDDA 311
            ++  + G            RA     + A+E    +    + L              +A
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCF-EKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194

Query: 312 VLVINNLLSRGMEPNSI-TYNTLLHSLGSRGCW-DAVDKILDIMNEA--SHSPTVFTYNI 367
           +  +   +   + P++      L   L       +   +   ++ EA             
Sbjct: 195 IDPLRQAIR--LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRS 252

Query: 368 LINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSS 427
                 +    D+AI    + +     P+    +  +G   +     +  Q+++L     
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRA----KVFQVMNLRE--- 303

Query: 428 CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEA 486
                   N +         +  A+    +  E   + +       L      ADQ EEA
Sbjct: 304 --------NGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEA 353

Query: 487 VDLLKEIGKRGNKMRNSAYRLVIH------GLCKSKKVDMAIQ 523
               +   K  +K      + ++H       L + K  D AI 
Sbjct: 354 EYYFQ---KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 49/337 (14%), Positives = 98/337 (29%), Gaps = 56/337 (16%)

Query: 273 IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDA-------VLVINNLLSRGMEP 325
           +    E  +              N L      +G+ + A         +I    +   E 
Sbjct: 38  VFYRTEFQNR------EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEI 91

Query: 326 NSIT----YNTLLHSLG----SRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGL 377
            S+     Y  + + +G     +   D V  + +  +      +            K G 
Sbjct: 92  RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGG 151

Query: 378 --VDRAINSFNQMVSKNCQPDIVTYNTVLG----ALCKEGMLNEALQLLHL---LNGSSC 428
              +RA   F + + K   P    + + L      L        A+  L     LN  + 
Sbjct: 152 NQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209

Query: 429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQVEEAV 487
              ++    L     +     +   L  + +E   +P      R+    + R D+ ++A+
Sbjct: 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAI 267

Query: 488 DLLKE--------------IG----KRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMI 529
           +LLK+              IG     +  ++ N     +       + +  A+  L+   
Sbjct: 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327

Query: 530 SSRYKPDDT-VFSTIVKKVADDGMTEEAYKLWQKLIE 565
                 +   V S +    A     EEA   +QK   
Sbjct: 328 E--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 35/241 (14%), Positives = 74/241 (30%), Gaps = 33/241 (13%)

Query: 225 YNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY----TILIEQVCKQCGIARAIEVL 280
                  + +    + AI   +  +R   P            L +   +        +++
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLV 236

Query: 281 DDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR 340
           +  A+E          S   F  ++ + D A+ ++   L     PN+     L   +G  
Sbjct: 237 E-EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE--YIPNNA---YLHCQIGC- 289

Query: 341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTY 400
            C+ A  K+  +MN           N +        L+  A+    +    N   ++   
Sbjct: 290 -CYRA--KVFQVMNL--------RENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRV 336

Query: 401 NTVLGALCKE-GMLNEAL----QLLHL-LNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL 454
            ++L +L        EA     +     L   +     + Y      L +  C +KA+  
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF--QLYQMKCEDKAIHH 394

Query: 455 Y 455
           +
Sbjct: 395 F 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	577
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.88
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.75
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.72
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.6
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.44
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.44
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.37
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.3
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.23
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.21
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.17
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.06
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.05
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.96
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.89
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.88
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.88
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.84
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.79
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.7
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.7
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.65
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.64
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.61
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.6
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.58
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.56
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.55
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.54
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.51
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.49
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.45
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.42
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.34
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.31
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.25
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.25
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.2
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.19
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.19
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.19
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.18
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.08
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.07
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.02
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.02
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.99
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.93
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.91
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.83
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.82
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.8
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.74
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.74
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.66
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.5
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.45
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.38
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.21
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.14
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.71
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.7
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.62
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.61
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.49
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.32
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.2
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.0
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.98
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.91
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.87
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.51
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.35
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.28
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.94
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.53
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.5
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.11
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.93
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.9
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.3
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.93
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.24
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.93
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.75
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	89.64
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.28
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.11
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	89.04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	88.63
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.24
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.9
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	87.1
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	86.97
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.88
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.17
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	83.57
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.43

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-40  Score=353.06  Aligned_cols=446  Identities=12%  Similarity=0.011  Sum_probs=394.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      ..+++..|+.++..|.+.|++++|+.+|+++...  .|+..++..++.+|.+.|++++|.++|+.+...  +++..+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~  155 (597)
T 2xpi_A           80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL  155 (597)
T ss_dssp             --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence            3468899999999999999999999999999864  568899999999999999999999999998654  678999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHh-hC--------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 008105          193 MVGGLCKRGQIRSAIALLDEMS-VS--------------GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYL  257 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~-~~--------------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~  257 (577)
                      ++.+|.+.|++++|.++|+++. ..              |.+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+.
T Consensus       156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~  234 (597)
T 2xpi_A          156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCY  234 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhh
Confidence            9999999999999999999533 21              223468999999999999999999999999998864 3344


Q ss_pred             HHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105          258 ITYTIL--------------------------------------IEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV  299 (577)
Q Consensus       258 ~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  299 (577)
                      ..+..+                                      +..|.+.|++++|.++|+++.+.  +++..+|+.++
T Consensus       235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  312 (597)
T 2xpi_A          235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA  312 (597)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred             HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence            443333                                      44566789999999999999865  57999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                      ..|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|..+++.+.+.. +.+..+|+.++..|.+.|+++
T Consensus       313 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  390 (597)
T 2xpi_A          313 DTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS  390 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence            999999999999999999998753 377889999999999999999999999998654 467899999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      +|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus       391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  468 (597)
T 2xpi_A          391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY  468 (597)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998864 5578899999999999999999999999998875 6688999999999999999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105          460 ENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMISSRY  533 (577)
Q Consensus       460 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  533 (577)
                      +.. +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+.+ 
T Consensus       469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  546 (597)
T 2xpi_A          469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-  546 (597)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            753 457899999999999999999999999999875    66777  7899999999999999999999999998754 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008105          534 KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVFEK  571 (577)
Q Consensus       534 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  571 (577)
                      +.+..+|..+..+|.+.|++++|.+.++++++.++...
T Consensus       547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~  584 (597)
T 2xpi_A          547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI  584 (597)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence            44789999999999999999999999999999776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=322.54  Aligned_cols=423  Identities=10%  Similarity=0.010  Sum_probs=369.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS-----------  181 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------  181 (577)
                      ..||..++..++.+|.+.|++++|..+|+++...  +++..+++.++.+|.+.|++++|.++|+++...           
T Consensus       113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  190 (597)
T 2xpi_A          113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL  190 (597)
T ss_dssp             HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------
T ss_pred             hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccc
Confidence            3578899999999999999999999999998654  678999999999999999999999999953221           


Q ss_pred             ----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH-----------------------------
Q 008105          182 ----GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI-----------------------------  228 (577)
Q Consensus       182 ----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-----------------------------  228 (577)
                          +.+++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+                             
T Consensus       191 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  269 (597)
T 2xpi_A          191 MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA  269 (597)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred             ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence                223458899999999999999999999999998764 2344444333                             


Q ss_pred             ---------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105          229 ---------LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV  299 (577)
Q Consensus       229 ---------i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  299 (577)
                               +..|.+.|++++|.++|+++.+.  +++..+++.++..|.+.|++++|.++|+++...+ +.+..+|+.++
T Consensus       270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  346 (597)
T 2xpi_A          270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL  346 (597)
T ss_dssp             HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH
Confidence                     44566789999999999998765  6899999999999999999999999999999875 34778999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  379 (577)
                      .++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus       347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  424 (597)
T 2xpi_A          347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD  424 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999998653 4468899999999999999999999999998764 347889999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      +|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus       425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999875 5688999999999999999999999999998865 5678999999999999999999999999998


Q ss_pred             HC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008105          460 EN----GISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRY  533 (577)
Q Consensus       460 ~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  533 (577)
                      +.    +..|+  ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.. 
T Consensus       503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-  580 (597)
T 2xpi_A          503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-  580 (597)
T ss_dssp             HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-
Confidence            75    66787  7899999999999999999999999998865 3478899999999999999999999999999742 


Q ss_pred             CCCHHHHHHHHHHH
Q 008105          534 KPDDTVFSTIVKKV  547 (577)
Q Consensus       534 ~p~~~~~~~l~~~~  547 (577)
                      +.+...+..+..+|
T Consensus       581 p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          581 PNEIMASDLLKRAL  594 (597)
T ss_dssp             TTCHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHH
Confidence            33466666665544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.8e-27  Score=237.65  Aligned_cols=381  Identities=13%  Similarity=0.085  Sum_probs=211.3

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            345555666666666666655542 2234444445555555566666666665555543 33455555555555555666


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDM  283 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  283 (577)
                      ++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+++
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            66655555555432 2234445555555555555555555555554432 222333444444444444555555444444


Q ss_pred             HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008105          284 AIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVF  363 (577)
Q Consensus       284 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  363 (577)
                      .... +.                                   +..+|..+...+...|++++|...|+++.+.+ +.+..
T Consensus       162 l~~~-p~-----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~  204 (388)
T 1w3b_A          162 IETQ-PN-----------------------------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD  204 (388)
T ss_dssp             HHHC-TT-----------------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHhC-CC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHH
Confidence            4432 11                                   23444444555555555555555555554432 22344


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA  443 (577)
Q Consensus       364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  443 (577)
                      .|..+...+...|++++|+..|++..... +.+..++..+...+.+.|++++|...++++.+.. +.+..+|..+...+.
T Consensus       205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            55555555556666666666666555542 3345555666666666666666666666665543 334556666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHH
Q 008105          444 KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQ  523 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  523 (577)
                      +.|++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+
T Consensus       283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  360 (388)
T 1w3b_A          283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            6666777776666666542 3456666667777777777777777777766542 2245566667777777777777777


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 008105          524 VLELMISSRYKP-DDTVFSTIVKKVADDG  551 (577)
Q Consensus       524 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g  551 (577)
                      .++++.+.  .| +...|..+...+...|
T Consensus       361 ~~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          361 HYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            77777642  33 3556666666665554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.3e-27  Score=235.71  Aligned_cols=365  Identities=13%  Similarity=0.071  Sum_probs=298.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      ...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence            344556677777777777666543 334556666666777777777777777776664 356777788888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN-SITYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      ++|.+.|+++.... +.+..+|..+...+.+.|++++|.+.++++.+..  |+ ...+..+...+...|++++|.+.|+.
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            88888888877653 2345678888888888888888888888887763  33 44666777888888999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCL  432 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~  432 (577)
                      +.+.. +.+..+|..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus       161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~  237 (388)
T 1w3b_A          161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence            88764 3467899999999999999999999999999875 5578889999999999999999999999888764 5568


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGL  512 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~  512 (577)
                      .++..+...|.+.|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence            899999999999999999999999999864 3357889999999999999999999999998864 45788999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          513 CKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       513 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      ...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++++..+.
T Consensus       316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  371 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT  371 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred             HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999864 2445888999999999999999999999999986553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=2.5e-30  Score=263.07  Aligned_cols=204  Identities=14%  Similarity=0.129  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 008105          136 ASKLIDIMARRNQIPDF-HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ---------IRS  205 (577)
Q Consensus       136 A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~~  205 (577)
                      +..+.+++.+++..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            33444444444443322 23555556666666666666666666666666666666666666555443         455


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          206 AIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI  285 (577)
Q Consensus       206 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  285 (577)
                      |.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105          286 EGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS  339 (577)
Q Consensus       286 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  339 (577)
                      .|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            666666666666666666666666666666666666666666666666665554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=3.1e-30  Score=262.42  Aligned_cols=186  Identities=16%  Similarity=0.162  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhHHHHHHHHHhhCCCCCCHHH
Q 008105          364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM---------LNEALQLLHLLNGSSCSPCLIT  434 (577)
Q Consensus       364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~p~~~~  434 (577)
                      .++.+|++|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+.         +++|.++|++|...|+.||..|
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            3455555555555555555555555555555555555555555554332         4556666666666666666666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK  514 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  514 (577)
                      |+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          515 SKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVAD  549 (577)
Q Consensus       515 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  549 (577)
                      .|++++|.+++++|.+.+..|+..||+.++..+..
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            66666666666666666666666666666655544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.2e-25  Score=226.81  Aligned_cols=404  Identities=14%  Similarity=0.029  Sum_probs=230.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...+..+...+.+.|++++|+..|+++.+.+  |+..++..+..++.+.|++++|.+.++++.+.+ +.+...|..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            4567788899999999999999999999975  689999999999999999999999999999876 4577889999999


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-------------------CC-
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP-------------------PY-  256 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~-  256 (577)
                      |.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..                   |+ 
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            999999999999999998875 445444444554444333333332222211111111                   11 


Q ss_pred             ------------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CCCHhhHH
Q 008105          257 ------------------------LITYTILIEQVCK---QCGIARAIEVLDDMAI-----EGC--------SPDIVTYN  296 (577)
Q Consensus       257 ------------------------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~  296 (577)
                                              ...+......+..   .|++++|...|+++..     ..-        +.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                    2222222222222   4555555555555554     100        11223444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008105          297 SLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG  376 (577)
Q Consensus       297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  376 (577)
                      .+...+...|++++|...++++.+..  |+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            55555555555555555555555442  224455555555555555555555555555442 223445555555555555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008105          377 LVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYG  456 (577)
Q Consensus       377 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  456 (577)
                      ++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5555555555555442 2344455555555555555555555555554432 2334455555555555555555555555


Q ss_pred             HHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          457 QMMENGI-SPD----DITHRTLIWGFCR---ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       457 ~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                      ++.+... .++    ...+..+...+..   .|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            5543210 011    2245555555555   555555555555554432 123444555555555555555555555555


Q ss_pred             HH
Q 008105          529 IS  530 (577)
Q Consensus       529 ~~  530 (577)
                      .+
T Consensus       476 ~~  477 (514)
T 2gw1_A          476 AD  477 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.93  E-value=4.9e-23  Score=214.72  Aligned_cols=434  Identities=12%  Similarity=0.022  Sum_probs=235.4

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      ....|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|++.|+++.+.+ +.+...+..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            34678889999999999999999999999975 4488899999999999999999999999999876 557889999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK------GCPPYLITYTILIEQVCK  269 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~  269 (577)
                      .+...|++++|.+.|+.+..   .|+  .....+..+...+...+|...++++...      ...|+....    ..+..
T Consensus       102 ~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~  172 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFG  172 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHH
Confidence            99999999999999974432   222  2222344555566677888888887543      122333322    22333


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCC------HHHHHHHH
Q 008105          270 QCGIARAIEVLDDMAIEGCSPDIV-TYNSLVNFSCK--------QGKYDDAVLVINNLLSRGMEPN------SITYNTLL  334 (577)
Q Consensus       270 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll  334 (577)
                      ..+.+.+...+......  .+... ....+...+..        .|++++|..+++++.+......      ..++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g  250 (537)
T 3fp2_A          173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG  250 (537)
T ss_dssp             TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred             hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence            33333333322221111  11111 11111111111        1245555555555554421100      11233344


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105          335 HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN  414 (577)
Q Consensus       335 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  414 (577)
                      ..+...|++++|...++...+..  |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence            44455555555555555555432  334455555555555555555555555555442 334455555555555555555


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      +|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus       328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            5555555554433 2234455555555555555555555555555432 2234455555555555555555555555544


Q ss_pred             hCCC-----CccHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          495 KRGN-----KMRNSAYRLVIHGLCKS----------KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKL  559 (577)
Q Consensus       495 ~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  559 (577)
                      +...     ......+......+...          |++++|...++++.+.. +.+...+..+...+.+.|++++|.+.
T Consensus       406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  484 (537)
T 3fp2_A          406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL  484 (537)
T ss_dssp             HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            3210     00111122233344444          55555555555555421 22345555555555555555555555


Q ss_pred             HHHHHHcCC
Q 008105          560 WQKLIEWKV  568 (577)
Q Consensus       560 ~~~~~~~~~  568 (577)
                      +++.++..+
T Consensus       485 ~~~al~~~~  493 (537)
T 3fp2_A          485 FEDSAILAR  493 (537)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhCC
Confidence            555555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=3.2e-22  Score=203.67  Aligned_cols=314  Identities=11%  Similarity=0.043  Sum_probs=178.9

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .+...+..++..|.+.|++++|+.+|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.+ +.+...+..+.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            345667777777888888888888887777653 3467777777777777788888887777777765 34566777777


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDV---ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      ..|.+.|++++|.+.|+++.+.. +.+.   ..+..++..+...                       .+..+...+.+.|
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~  157 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG  157 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence            77777777777777777777653 2233   4555554431100                       0111222344445


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 008105          272 GIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       272 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      ++++|.+.|+++.... +.+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...++
T Consensus       158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  235 (450)
T 2y4t_A          158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR  235 (450)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555444432 2234444444455555555555555555444332 1233444444444445555555555554


Q ss_pred             HHHhCCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChh
Q 008105          352 IMNEASHSPTVFTYNI------------LINGLCKYGLVDRAINSFNQMVSKNCQPD-----IVTYNTVLGALCKEGMLN  414 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~  414 (577)
                      .+.+.. +.+...+..            +...+.+.|++++|...|+++.+..  |+     ...+..+...+.+.|+++
T Consensus       236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~  312 (450)
T 2y4t_A          236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPV  312 (450)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHH
Confidence            444332 112222222            2556666666666666666666542  22     235555666666666666


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          415 EALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       415 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      +|...++.+.+.. +.+...|..+..+|...|++++|...|+++.+
T Consensus       313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  357 (450)
T 2y4t_A          313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE  357 (450)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            6666666655543 33556666666666666666666666666665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=3e-22  Score=203.87  Aligned_cols=283  Identities=11%  Similarity=0.046  Sum_probs=179.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT---ITY  190 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~  190 (577)
                      +.+..+|..+..+|.+.|++++|...|+++.+.+ +.+..++..+...|.+.|++++|.+.|+++.+.. +.+.   ..+
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~  134 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQ  134 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHH
Confidence            4578999999999999999999999999999985 3478889999999999999999999999999875 3344   667


Q ss_pred             HHHHHH------------HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 008105          191 NMMVGG------------LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       191 ~~li~~------------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  258 (577)
                      ..++..            +.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|++.|+++.+.. +.+..
T Consensus       135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  212 (450)
T 2y4t_A          135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTE  212 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            776554            666777777777777766543 4456666777777777777777777777766542 44566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLG  338 (577)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  338 (577)
                      ++..+...+...|++++|.+.|+++.... +.+...+..+...              .         ....+..+...+.
T Consensus       213 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~  268 (450)
T 2y4t_A          213 AFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV--------------K---------KLNKLIESAEELI  268 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH--------------H---------HHHHHHHHHHHHH
Confidence            66666677777777777777777666542 1122333322000              0         0000111244445


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008105          339 SRGCWDAVDKILDIMNEASHSPT----VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLN  414 (577)
Q Consensus       339 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  414 (577)
                      ..|++++|...|+.+.+.... +    ...+..+...+.+.|++++|+..++++.+.. +.+..+|..+..+|...|+++
T Consensus       269 ~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~  346 (450)
T 2y4t_A          269 RDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYD  346 (450)
T ss_dssp             HHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence            555555555555555443211 1    2244555555555555555555555555442 334555555555555556666


Q ss_pred             HHHHHHHHHhhC
Q 008105          415 EALQLLHLLNGS  426 (577)
Q Consensus       415 ~A~~~~~~~~~~  426 (577)
                      +|...++.+.+.
T Consensus       347 ~A~~~~~~al~~  358 (450)
T 2y4t_A          347 EAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            666665555553

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.8e-22  Score=204.79  Aligned_cols=375  Identities=11%  Similarity=0.015  Sum_probs=301.6

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      ||+.+|..+..+|.+.|++++|++.++++.+.+ +.+..++..+..++.+.|++++|...|+++.+.+ +++......++
T Consensus        37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~  114 (514)
T 2gw1_A           37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPML  114 (514)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHH
T ss_pred             ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHH
Confidence            678999999999999999999999999999875 4477899999999999999999999999999886 34555555555


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC-----------------------------------CC---------CCCHHHHHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS-----------------------------------GC---------EPDVITYNTILR  230 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~-----------------------------------g~---------~~~~~~~~~li~  230 (577)
                      ..+.+......+.+.+..+...                                   ..         +.+...+.....
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (514)
T 2gw1_A          115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL  194 (514)
T ss_dssp             HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence            5554433333333322211110                                   00         011444455555


Q ss_pred             HHHh---CCChHHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhh
Q 008105          231 TMFD---NGKFKQAIGFWKDQLR-----KGC--------PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVT  294 (577)
Q Consensus       231 ~~~~---~~~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  294 (577)
                      .+..   .|++++|+..|+++.+     ...        +.+..++..+...+...|++++|.+.|+++....  |+...
T Consensus       195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~  272 (514)
T 2gw1_A          195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS  272 (514)
T ss_dssp             HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred             HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence            5554   8999999999999987     311        2235678888899999999999999999999875  34888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008105          295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCK  374 (577)
Q Consensus       295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  374 (577)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+... .+...+..+...+.+
T Consensus       273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~  350 (514)
T 2gw1_A          273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYR  350 (514)
T ss_dssp             HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHH
Confidence            9999999999999999999999998874 33567888999999999999999999999988753 467789999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHh---cC
Q 008105          375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSC-SPC----LITYNTLIDGLAK---KG  446 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~---~g  446 (577)
                      .|++++|...++++.+.. +.+...+..+...+.+.|++++|...++.+..... .++    ...+..+...+..   .|
T Consensus       351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  429 (514)
T 2gw1_A          351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE  429 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred             cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999998864 55678899999999999999999999998876431 111    3488999999999   99


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  497 (577)
                      ++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus       430 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          430 NFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            9999999999998753 3467888999999999999999999999998864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=1.1e-17  Score=171.86  Aligned_cols=364  Identities=9%  Similarity=-0.004  Sum_probs=261.4

Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 008105          136 ASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK----RGQIRSAI  207 (577)
Q Consensus       136 A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~  207 (577)
                      +...+....+.|   +...+..+...|..    .+++++|.+.|++..+.|   +...+..|...|..    .+++++|.
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            344555555443   56666667777766    677888888887777654   55667777777777    77788888


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 008105          208 ALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK----QCGIARAIEV  279 (577)
Q Consensus       208 ~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  279 (577)
                      +.|++..+.|   +...+..|...|..    .+++++|++.|++..+.|   +...+..|...|..    .++.++|.+.
T Consensus       100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  173 (490)
T 2xm6_A          100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW  173 (490)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            8887777654   56666667777776    677888888888777765   56667777777766    6778888888


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHH
Q 008105          280 LDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS----RGCWDAVDKILD  351 (577)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~  351 (577)
                      |++..+.|   +...+..+...|..    .++.++|..+|++..+.|   +...+..+...|..    .+++++|...|+
T Consensus       174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~  247 (490)
T 2xm6_A          174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS  247 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            88777664   56677777777776    778888888888777764   45566666666664    677888888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHH
Q 008105          352 IMNEASHSPTVFTYNILINGLCK----YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE-----GMLNEALQLLHL  422 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~  422 (577)
                      ...+.+   +...+..+...|..    .++.++|+..|++..+.+   +...+..+...|...     +++++|...++.
T Consensus       248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~  321 (490)
T 2xm6_A          248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK  321 (490)
T ss_dssp             HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence            777654   45566666667776    778888888888877654   556666677777766     788888888887


Q ss_pred             HhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhh
Q 008105          423 LNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGK  495 (577)
Q Consensus       423 ~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~  495 (577)
                      ..+.+   +...+..+...|...|   ++++|.+.|++..+.|   +...+..+...|..    .+++++|.+.|++..+
T Consensus       322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            77765   4556666777776655   6778888888887763   66777777777777    7788888888888777


Q ss_pred             CCCCccHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 008105          496 RGNKMRNSAYRLVIHGLCK----SKKVDMAIQVLELMISSR  532 (577)
Q Consensus       496 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  532 (577)
                      .+   +...+..+...|..    .+++++|...|++..+.+
T Consensus       396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            54   45566677777777    788888888888887654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=6.5e-20  Score=191.05  Aligned_cols=397  Identities=13%  Similarity=0.051  Sum_probs=294.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+...+...|++++|.+.|+.+ ...  |+  ..+..+
T Consensus        57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~  130 (537)
T 3fp2_A           57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GD--FDGASI  130 (537)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C--------------
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CC--CChHHH
Confidence            468899999999999999999999999999975 447888999999999999999999999743 322  22  223335


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS------GCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLI-TYTILIEQV  267 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~  267 (577)
                      ..+...+...+|...++++...      ...|+..    .+..+....+.+.+...+.....  ..+... ....+...+
T Consensus       131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~  204 (537)
T 3fp2_A          131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLY  204 (537)
T ss_dssp             -CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHH
Confidence            5566667778899999998653      1123333    33444455566555544333211  122211 222222221


Q ss_pred             --------HHcCCHHHHHHHHHHHHHcCCCCC--------HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 008105          268 --------CKQCGIARAIEVLDDMAIEGCSPD--------IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYN  331 (577)
Q Consensus       268 --------~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  331 (577)
                              ...|++++|.++++++.+..  |+        ..++..+...+...|++++|...++++.+.  .|+...+.
T Consensus       205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  280 (537)
T 3fp2_A          205 SATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYI  280 (537)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHH
Confidence                    12357888999999888653  33        234666777888899999999999999887  55677888


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          332 TLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG  411 (577)
Q Consensus       332 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  411 (577)
                      .+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|
T Consensus       281 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g  358 (537)
T 3fp2_A          281 FLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQG  358 (537)
T ss_dssp             HHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            88889999999999999999988765 3467889999999999999999999999998874 446778888999999999


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc------
Q 008105          412 MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENG-----ISPDDITHRTLIWGFCRA------  480 (577)
Q Consensus       412 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~------  480 (577)
                      ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+..     .......+......+...      
T Consensus       359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  437 (537)
T 3fp2_A          359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT  437 (537)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence            9999999999888764 5567788899999999999999999999987532     111222344555677777      


Q ss_pred             ----CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          481 ----DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       481 ----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                          |++++|...|+++.+... .+...+..+...+.+.|++++|.+.|+++.+.
T Consensus       438 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          438 QLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                999999999999887642 35678888999999999999999999999864

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.88  E-value=6.4e-19  Score=173.11  Aligned_cols=331  Identities=11%  Similarity=0.072  Sum_probs=205.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      |+..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45677888899999999999999999998874 3467888888899999999999999999988875 446788888899


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCC---CCHHHHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCE---PDVITYNTI------------LRTMFDNGKFKQAIGFWKDQLRKGCPPYLITY  260 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  260 (577)
                      .+...|++++|.+.|+++.+.. +   .+...+..+            ...+...|++++|++.++++.+.. +.+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999999999999999988763 2   234444444            345555666666666666655542 3445555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR  340 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  340 (577)
                      ..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...+++..+.... +...+..+..     
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~-----  230 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQ-----  230 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH-----
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHH-----
Confidence            555555556666666666665555442 234455555555555555555555555555543211 1111111100     


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHH
Q 008105          341 GCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI----VTYNTVLGALCKEGMLNEA  416 (577)
Q Consensus       341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A  416 (577)
                                  +.      .......+...+.+.|++++|...++++.+.. +.+.    ..+..+...+.+.|++++|
T Consensus       231 ------------~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          231 ------------VK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             ------------HH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ------------HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence                        00      00011122445666677777777776666643 2222    2233455666667777777


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008105          417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFC  478 (577)
Q Consensus       417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  478 (577)
                      ...++...+.. +.+..++..+...+...|++++|...|++..+.. +-+...+..+..+..
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            77776666543 4456666667777777777777777777776542 123444555554443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.88  E-value=2.5e-17  Score=169.32  Aligned_cols=354  Identities=12%  Similarity=0.022  Sum_probs=308.4

Q ss_pred             CCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCC
Q 008105          115 NDEKTNNKILQNFCS----RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPD  186 (577)
Q Consensus       115 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~  186 (577)
                      .|+..+..|...|..    .+++++|...|++..+.|   +...+..+...|..    .+++++|.++|++..+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            367788889999988    899999999999999874   67788889999998    899999999999999876   6


Q ss_pred             HHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHH
Q 008105          187 TITYNMMVGGLCK----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       187 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~  258 (577)
                      ...+..|...|..    .+++++|.+.|++..+.|   +...+..+...|..    .+++++|++.|++..+.+   +..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            7788888899988    889999999999998865   67788888888887    889999999999999875   788


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105          259 TYTILIEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITY  330 (577)
Q Consensus       259 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~  330 (577)
                      .+..+...|..    .++.++|.+.|++..+.|   +...+..+...|..    .+++++|..+|++..+.|   +...+
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  258 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ  258 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            88889998988    899999999999998875   66778888888886    899999999999998765   45667


Q ss_pred             HHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008105          331 NTLLHSLGS----RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY-----GLVDRAINSFNQMVSKNCQPDIVTYN  401 (577)
Q Consensus       331 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~  401 (577)
                      ..+...|..    .++.++|...|+...+.+   +...+..+...|...     +++++|+..|++..+.+   +...+.
T Consensus       259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~  332 (490)
T 2xm6_A          259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA  332 (490)
T ss_dssp             HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence            777777777    899999999999998765   566788888888887     89999999999999875   567788


Q ss_pred             HHHHHHHhcC---ChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008105          402 TVLGALCKEG---MLNEALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLI  474 (577)
Q Consensus       402 ~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  474 (577)
                      .+...|...|   +.++|...|+...+.+   +...+..+...|..    .+++++|...|++..+.|   +...+..|.
T Consensus       333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg  406 (490)
T 2xm6_A          333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG  406 (490)
T ss_dssp             HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence            8888888766   7899999999998875   67888899999988    899999999999999875   677888899


Q ss_pred             HHHHh----cCCHHHHHHHHHHHhhCCC
Q 008105          475 WGFCR----ADQVEEAVDLLKEIGKRGN  498 (577)
Q Consensus       475 ~~~~~----~g~~~~A~~~~~~m~~~~~  498 (577)
                      ..|..    .++.++|.+.|++..+.+.
T Consensus       407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          407 EIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            99988    8999999999999988764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.1e-18  Score=169.32  Aligned_cols=332  Identities=10%  Similarity=0.055  Sum_probs=233.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      |+..+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34566777777888888888888888887765 4467777778888888888888888888877653 346677777778


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCP---PYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK  307 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  307 (577)
                      .+...|++++|.+.|+++.+.. +   .+...+..+.....                       ...+..+...+...|+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence            8888888888888888777642 2   23333333211100                       0112233456667777


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          308 YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQ  387 (577)
Q Consensus       308 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  387 (577)
                      +++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|++
T Consensus       136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  213 (359)
T 3ieg_A          136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE  213 (359)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            777777777776653 2345566667777777777777777777776653 34666777777777777777777777777


Q ss_pred             HHHCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008105          388 MVSKNCQPDIVTYN------------TVLGALCKEGMLNEALQLLHLLNGSSCSPCL----ITYNTLIDGLAKKGCMEKA  451 (577)
Q Consensus       388 m~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A  451 (577)
                      ..+.. +.+...+.            .+...+.+.|++++|...++.+.+.. +.+.    ..+..+...+...|++++|
T Consensus       214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            77653 33333332            33667899999999999999988764 2233    2355678899999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105          452 MVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK  514 (577)
Q Consensus       452 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  514 (577)
                      ...+++..+.. +.+...+..+...+...|++++|.+.|+++.+... -+...+..+..+...
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence            99999998853 34788999999999999999999999999998642 245566666665543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=4.2e-17  Score=169.41  Aligned_cols=421  Identities=11%  Similarity=0.038  Sum_probs=275.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .|..+|..++. +.+.|++++|..+|+++++. .+.+...|..++..+.+.|++++|.++|+++++..  |+...|..++
T Consensus        11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            36677887777 46778888888888888776 34467777888888888888888888888887763  5666777666


Q ss_pred             HHH-HhcCChHHHHH----HHHHHhhC-CCC-CCHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHCCCCCC--
Q 008105          195 GGL-CKRGQIRSAIA----LLDEMSVS-GCE-PDVITYNTILRTMFD---------NGKFKQAIGFWKDQLRKGCPPY--  256 (577)
Q Consensus       195 ~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~~~~~~~--  256 (577)
                      ... ...|++++|.+    +|++.... |.. ++...|...+....+         .|++++|..+|++.++.  |.+  
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~~~  164 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMINI  164 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCTTH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhhhH
Confidence            433 34566666654    66655432 433 345667666665544         56777777777777652  211  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH------hhCC---CCCC-
Q 008105          257 LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL------LSRG---MEPN-  326 (577)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g---~~p~-  326 (577)
                      ...|..........|. ..+.                   .++.  .+.+++..|..++.++      .+..   +.|+ 
T Consensus       165 ~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~  222 (530)
T 2ooe_A          165 EQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN  222 (530)
T ss_dssp             HHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred             HHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence            1222222111000010 0000                   0110  1233455566555542      2221   2333 


Q ss_pred             -------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCHH-----
Q 008105          327 -------SITYNTLLHSLGSR----GCW----DAVDKILDIMNEASHSPTVFTYNILINGLCK-------YGLVD-----  379 (577)
Q Consensus       327 -------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-----  379 (577)
                             ...|...+......    ++.    ..+..+|++..... +.+...|..++..+.+       .|+++     
T Consensus       223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~  301 (530)
T 2ooe_A          223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF  301 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence                   13444444332221    222    36677888877653 4467788888887775       68876     


Q ss_pred             --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHH
Q 008105          380 --RAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC-L-ITYNTLIDGLAKKGCMEKAMVLY  455 (577)
Q Consensus       380 --~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~  455 (577)
                        +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+.  .|+ . ..|..++..+.+.|++++|.++|
T Consensus       302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  379 (530)
T 2ooe_A          302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF  379 (530)
T ss_dssp             HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence              88999999886323456888888888889999999999999988875  343 2 47888888888889999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-C
Q 008105          456 GQMMENGISPDDITHRTLIWG-FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-Y  533 (577)
Q Consensus       456 ~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~  533 (577)
                      ++..+.. +.+...|...+.. +...|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+... .
T Consensus       380 ~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          380 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            9998752 1223333332222 335899999999999887753 2357788888888889999999999999998753 2


Q ss_pred             CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          534 KPD--DTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       534 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .|+  ...|...+......|+.+.+..+.+++.+.-+
T Consensus       458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            332  55788888888889999999999988887544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.6e-18  Score=166.68  Aligned_cols=199  Identities=7%  Similarity=-0.023  Sum_probs=94.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .++..+..++..+...|++++|.++|+++.+.. +.+...+..++..+.+.|++++|..+++++.+.. +.+...|..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            344445555555555555555555555555543 2234444445555555555555555555555443 22344455555


Q ss_pred             HHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          195 GGLCKRG-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       195 ~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      ..+...| ++++|.+.|++..+.. +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            5555555 5555555555554432 2234444445555555555555555555444432 22233333344444444444


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNL  318 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  318 (577)
                      ++|.+.++++.... +.+...+..+...+...|++++|...++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  219 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA  219 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            44444444444332 122334444444444444444444444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.85  E-value=8.3e-17  Score=167.16  Aligned_cols=389  Identities=6%  Similarity=-0.022  Sum_probs=266.3

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHhC-CCC-C
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGL-IRIDRIEKASK----VLQIMVMS-GGV-P  185 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~~~~~-g~~-~  185 (577)
                      .+.+...|..++..+.+.|++++|..+|++++...  |+...|..++... ...|+++.|.+    +|+..++. |.. +
T Consensus        42 ~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~  119 (530)
T 2ooe_A           42 FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIM  119 (530)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTT
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcc
Confidence            34578899999999999999999999999999874  6788888877543 45677777665    77777653 544 3


Q ss_pred             CHHHHHHHHHHHHh---------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 008105          186 DTITYNMMVGGLCK---------RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY  256 (577)
Q Consensus       186 ~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~  256 (577)
                      +...|...+....+         .|++++|..+|++..+....+....|..........+.                   
T Consensus       120 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-------------------  180 (530)
T 2ooe_A          120 SYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-------------------  180 (530)
T ss_dssp             CHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-------------------
T ss_pred             cHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-------------------
Confidence            56788888887665         78999999999999873111112333332221111110                   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcC---CCCC--------HhhHHHHHHHHHhc----CCH----HHH
Q 008105          257 LITYTILIEQVCKQCGIARAIEVLDDMA------IEG---CSPD--------IVTYNSLVNFSCKQ----GKY----DDA  311 (577)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~A  311 (577)
                       .+...++.  .+.+++..|..++.+..      ...   ++|+        ...|...+......    ++.    +++
T Consensus       181 -~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a  257 (530)
T 2ooe_A          181 -HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV  257 (530)
T ss_dssp             -HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred             -hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence             01111111  12234555555555421      111   2333        23454444332221    222    367


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008105          312 VLVINNLLSRGMEPNSITYNTLLHSLGS-------RGCWD-------AVDKILDIMNEASHSPTVFTYNILINGLCKYGL  377 (577)
Q Consensus       312 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  377 (577)
                      ..+|++..... +.+...|..+...+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.|+
T Consensus       258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~  336 (530)
T 2ooe_A          258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK  336 (530)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence            77888877652 2356677777777664       68876       889999988863234568888999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 008105          378 VDRAINSFNQMVSKNCQPD-I-VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG-LAKKGCMEKAMVL  454 (577)
Q Consensus       378 ~~~A~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~  454 (577)
                      +++|..+|+++++.  .|+ . ..|...+..+.+.|++++|..+|+...+.. +.+...|...... +...|+.++|..+
T Consensus       337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            99999999999886  343 3 578888888888999999999999888763 2233333332222 3368999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-Ccc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          455 YGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN-KMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       455 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      |++..+.. +.+...|..++..+.+.|+.++|..+|++....+. .|+  ...|...+......|+.+.+..+.+++.+
T Consensus       414 ~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          414 FELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99988753 33578899999999999999999999999987532 232  44788888888889999999999998875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=4.2e-18  Score=165.22  Aligned_cols=295  Identities=11%  Similarity=-0.011  Sum_probs=251.8

Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          148 QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNT  227 (577)
Q Consensus       148 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  227 (577)
                      .+.+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...|..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            45577788889999999999999999999999876 4456677778889999999999999999998764 457888999


Q ss_pred             HHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105          228 ILRTMFDNG-KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG  306 (577)
Q Consensus       228 li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  306 (577)
                      +...+...| ++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence            999999999 9999999999998764 5567889999999999999999999999998874 335677888999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCH
Q 008105          307 KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS--------HSPTVFTYNILINGLCKYGLV  378 (577)
Q Consensus       307 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~  378 (577)
                      ++++|...+++..+.. +.+...+..+...+...|++++|...++...+..        .+....++..+...+.+.|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999999874 3367789999999999999999999999887642        134567899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008105          379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGL-AKKGCME  449 (577)
Q Consensus       379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~  449 (577)
                      ++|...+++..+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus       253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99999999999874 5578889999999999999999999999998875 55778888888887 4556543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=4.3e-18  Score=168.10  Aligned_cols=303  Identities=12%  Similarity=0.000  Sum_probs=165.0

Q ss_pred             cCCHHHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105          165 IDRIEKASK-VLQIMVMSGG---VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ  240 (577)
Q Consensus       165 ~g~~~~A~~-~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  240 (577)
                      .|++++|.+ .+++..+...   ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            355666665 5554443211   1123445556666666666666666666666553 3455566666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      |++.|+++.+.. +.+..++..+...+...|++++|.+.++++...... +...+..+...       ...         
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~---------  178 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG---------  178 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh---------
Confidence            666666666543 445566666666666666666666666666654311 11111111000       000         


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008105          321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP-TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVT  399 (577)
Q Consensus       321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~  399 (577)
                        ..+. ..+.. +..+...|++++|...++.+.+..... +..++..+...|.+.|++++|+..|+++.+.. +.+..+
T Consensus       179 --~~~~-~~~~~-~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~  253 (368)
T 1fch_A          179 --AGLG-PSKRI-LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL  253 (368)
T ss_dssp             ----------CT-THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             --hccc-HHHHH-HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence              0000 00111 112225566666666666665543211 35566666666666677777777776666553 345566


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHHH
Q 008105          400 YNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI----------SPDDIT  469 (577)
Q Consensus       400 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~  469 (577)
                      +..+...+.+.|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+...          +....+
T Consensus       254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  332 (368)
T 1fch_A          254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI  332 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence            6666667777777777777776666543 44566677777777777777777777777654210          011567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 008105          470 HRTLIWGFCRADQVEEAVDLLKE  492 (577)
Q Consensus       470 ~~~li~~~~~~g~~~~A~~~~~~  492 (577)
                      |..+..+|...|+.++|..++++
T Consensus       333 ~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          333 WSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHhCChHhHHHhHHH
Confidence            77777777777777777776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=1.1e-17  Score=165.08  Aligned_cols=291  Identities=13%  Similarity=0.017  Sum_probs=178.5

Q ss_pred             HHHhcCChhhHHH-HHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          126 NFCSRGKLTDASK-LIDIMARRNQI---PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       126 ~~~~~g~~~~A~~-l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      ++.-.|++++|.. .|++.......   .+...+..+...+.+.|++++|...|+++.+.. +.+...|..+...|.+.|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3445578888888 88766554221   135668888899999999999999999999875 457788889999999999


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---------------HHH
Q 008105          202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL---------------IEQ  266 (577)
Q Consensus       202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---------------~~~  266 (577)
                      ++++|.+.|+++.+.. +.+..++..+...+...|++++|++.++++.... +.+...+..+               +..
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            9999999999988765 5578889999999999999999999999988764 2222222211               222


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHH
Q 008105          267 VCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDA  345 (577)
Q Consensus       267 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~  345 (577)
                      +...|++++|.+.|+++....... +..++..+...+.+.|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence            235666666666666665542111 34556666666666666666666666655542 2234455555556666666666


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCChhH
Q 008105          346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQP----------DIVTYNTVLGALCKEGMLNE  415 (577)
Q Consensus       346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~li~~~~~~g~~~~  415 (577)
                      |...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.....          ...+|..+..++.+.|++++
T Consensus       270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            666666555442 2344555555666666666666666665555431000          13455555555555555555


Q ss_pred             HHHHHH
Q 008105          416 ALQLLH  421 (577)
Q Consensus       416 A~~~~~  421 (577)
                      |..++.
T Consensus       349 A~~~~~  354 (368)
T 1fch_A          349 YGAADA  354 (368)
T ss_dssp             HHHHHT
T ss_pred             HHHhHH
Confidence            554443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.80  E-value=3.3e-15  Score=161.06  Aligned_cols=381  Identities=11%  Similarity=0.089  Sum_probs=294.1

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQ--IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      .--...+++|...|.+.+|+++++++...+-  .-+....+.++.+..+. +..+..+..++...       .....+..
T Consensus       986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~ 1057 (1630)
T 1xi4_A          986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIAN 1057 (1630)
T ss_pred             HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHH
Confidence            3345678999999999999999999984421  13556677777777776 55666666665542       12444778


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .+...|.+++|..+|++..     ......+.++.   ..+++++|.++.++.      -+..+|..+..++.+.|++++
T Consensus      1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence            8889999999999999863     22222333333   678899999998865      257889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE  355 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  355 (577)
                      |.+.|.+.      .|...|..++..+.+.|++++|.+.+....+..  ++....+.++.+|++.+++++...+.    +
T Consensus      1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A         1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred             HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence            99999664      377889999999999999999999999887764  34333445888999999988655443    2


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHH
Q 008105          356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITY  435 (577)
Q Consensus       356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~  435 (577)
                         .++...|..+...|...|++++|..+|...         ..|..+...+.+.|++++|.+.+++..      +..+|
T Consensus      1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A         1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence               356677888999999999999999999985         379999999999999999999998772      56899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc
Q 008105          436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS  515 (577)
Q Consensus       436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  515 (577)
                      ..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+..++++.
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence            99999999999999998876643     3466778899999999999999999998887654 33455676666666654


Q ss_pred             --CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 008105          516 --KKVDMAIQVLELMISSRYKP------DDTVFSTIVKKVADDGMTEEAYK  558 (577)
Q Consensus       516 --g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~  558 (577)
                        ++..++.++|..-.  +++|      +...|..++-.|.+.|+++.|..
T Consensus      1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence              45556666655433  3333      46779999999999999999883

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1e-16  Score=155.51  Aligned_cols=374  Identities=11%  Similarity=0.060  Sum_probs=166.8

Q ss_pred             hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008105          129 SRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIA  208 (577)
Q Consensus       129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  208 (577)
                      +.|++++|.+.++++.      ++.+|..++.++.+.|++++|++.|.+.      +|...|..++..+...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            5677888888888872      3347888888888888888888888653      466688888888888888888888


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008105          209 LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC  288 (577)
Q Consensus       209 ~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  288 (577)
                      .++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            77766654  4567778888888888888888887764       366678888888888888888888888866     


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          289 SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL  368 (577)
Q Consensus       289 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  368 (577)
                          ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+.     ..+.....+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence                36888888888888888888888887      267888888888888888888855544322     333445568


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhhCCCCC------CHHHHHHHHH
Q 008105          369 INGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE--GMLNEALQLLHLLNGSSCSP------CLITYNTLID  440 (577)
Q Consensus       369 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~  440 (577)
                      +..|.+.|++++|..+++..+... +.....|+-+..+|++-  +++.+.++.|..  +.+++|      +...|..+..
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~  290 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF  290 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence            888888899999988888888765 56677777777777764  344444544432  122222      4567888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCC-C-------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHH
Q 008105          441 GLAKKGCMEKAMVLYGQMMENG-I-------------SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYR  506 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~~g-~-------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  506 (577)
                      .|.+.++++.|...   |.++. .             ..+...|-..+..|... .+..--.++.-+ ...+.     .+
T Consensus       291 ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l-~~~ld-----~~  360 (449)
T 1b89_A          291 LYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVL-SPRLD-----HT  360 (449)
T ss_dssp             HHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHH-GGGCC-----HH
T ss_pred             HHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHH-HhccC-----cH
Confidence            88888888888653   44431 1             12334444444444411 111111111111 11111     12


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          507 LVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKL  559 (577)
Q Consensus       507 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  559 (577)
                      ..+..+.+.|++.-+..++..+.+.   .+..+=.++-+.|....+++.-+.-
T Consensus       361 r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~~~lr~s  410 (449)
T 1b89_A          361 RAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDYQALRTS  410 (449)
T ss_dssp             HHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3455566677777777777666542   3455555666677777777654443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=4.4e-17  Score=160.72  Aligned_cols=265  Identities=11%  Similarity=-0.054  Sum_probs=181.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .+...|..+...+.+.|++++|+..|+++++.. +.+..++..+...+.+.|++++|++.|+++.+.. +.+..+|..+.
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            345668889999999999999999999999875 3478889999999999999999999999998875 45688899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPD-----------VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP--YLITYT  261 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~-----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  261 (577)
                      ..|...|++++|.+.|+++.+..  |+           ...+..+...+...|++++|++.|+++.+.. +.  +..++.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~  217 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQT  217 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHH
Confidence            99999999999999999887642  22           1223334667777777788887777777653 22  566777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC
Q 008105          262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG  341 (577)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g  341 (577)
                      .+...+.+.|++++|.+.|+++.... +.+..+|..+...|.+.|++++|+..++++.+.. +.+..++..+..+|...|
T Consensus       218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  295 (365)
T 4eqf_A          218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG  295 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            77777777777777777777776653 3356667777777777777777777777766652 223556666666666666


Q ss_pred             CHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105          342 CWDAVDKILDIMNEASHS-----------PTVFTYNILINGLCKYGLVDRAINSFN  386 (577)
Q Consensus       342 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~  386 (577)
                      ++++|...++...+....           .+...|..+..++...|+.+.+..+..
T Consensus       296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            666666666666543210           023445555555555555555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=1.2e-17  Score=164.82  Aligned_cols=231  Identities=13%  Similarity=0.043  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008105          223 ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFS  302 (577)
Q Consensus       223 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  302 (577)
                      ..|..+...+.+.|++++|++.|+++++.. +.+..++..+...+.+.|++++|.+.|+++.... +.+..+|..+...|
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345555556666666666666666665542 3455566666666666666666666666665543 22455666666666


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCH-----------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 008105          303 CKQGKYDDAVLVINNLLSRGMEPNS-----------ITYNTLLHSLGSRGCWDAVDKILDIMNEASHS-PTVFTYNILIN  370 (577)
Q Consensus       303 ~~~g~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~  370 (577)
                      ...|++++|...++++.+..  |+.           ..+..+...+...|++++|...++++.+.... .+..++..+..
T Consensus       144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            66666666666666665431  111           11222334444455555555555554443211 13444444455


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105          371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEK  450 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  450 (577)
                      .|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...++++.+.. +.+..++..+...|.+.|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            5555555555555555444432 2234444444444444444444444444443332 2223344444444444444444


Q ss_pred             HHHHHHHHH
Q 008105          451 AMVLYGQMM  459 (577)
Q Consensus       451 A~~~~~~m~  459 (577)
                      |...|+++.
T Consensus       300 A~~~~~~al  308 (365)
T 4eqf_A          300 AVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=9.4e-17  Score=155.45  Aligned_cols=234  Identities=11%  Similarity=-0.048  Sum_probs=145.8

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...+..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            44567788899999999999999999998874 3477888888899999999999999999998875 457788888899


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI--------------LR-TMFDNGKFKQAIGFWKDQLRKGCPPYLITY  260 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  260 (577)
                      .|...|++++|.+.++++.+.. +.+...+..+              .. .+...|++++|.+.++++.+.. +.+...+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence            9999999999999999888763 2222223222              11 2444555555555555555442 3344555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR  340 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  340 (577)
                      ..+...+.+.|++++|.+.++++.... +.+...|..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  253 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM  253 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence            555555555555555555555555432 2234445555555555555555555555544432 11233444444444444


Q ss_pred             CCHHHHHHHHHHHHh
Q 008105          341 GCWDAVDKILDIMNE  355 (577)
Q Consensus       341 g~~~~a~~~~~~~~~  355 (577)
                      |++++|.+.++...+
T Consensus       254 g~~~~A~~~~~~a~~  268 (327)
T 3cv0_A          254 SQYDLAAKQLVRAIY  268 (327)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH
Confidence            444444444444433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=1.3e-15  Score=155.82  Aligned_cols=387  Identities=11%  Similarity=-0.023  Sum_probs=220.9

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----
Q 008105          150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMS--------GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS-----  216 (577)
Q Consensus       150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----  216 (577)
                      .....|+.+...+...|++++|++.|++.++.        .-+....+|+.+..+|...|++++|...+++..+.     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34566788888888888888888888877542        11234567778888888888888888888776532     


Q ss_pred             C-C-CCCHHHHHHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCC
Q 008105          217 G-C-EPDVITYNTILRTMFD--NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV---CKQCGIARAIEVLDDMAIEGCS  289 (577)
Q Consensus       217 g-~-~~~~~~~~~li~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~  289 (577)
                      + . .....++..+..++..  .+++++|++.|++.++.. |.+...+..+...+   ...++.++|++.+++..+.. +
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence            1 0 1134455555444443  446777888887777653 33455555444443   33456667777777766653 2


Q ss_pred             CCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008105          290 PDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTY  365 (577)
Q Consensus       290 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  365 (577)
                      .+...+..+...+..    .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence            244455544444433    345667777777766553 2245566667777777777777777777766653 2345555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 008105          366 NILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKK  445 (577)
Q Consensus       366 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~  445 (577)
                      ..+...|...+....+         ..       ...........+..+.|...++...+.. +.+...+..+...|...
T Consensus       285 ~~lg~~y~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~  347 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMN---------LR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA  347 (472)
T ss_dssp             HHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhh---------HH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence            5555544322111000         00       0000000111234567777777776654 45567788888899999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 008105          446 GCMEKAMVLYGQMMENGISPDDI--THRTLIW-GFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAI  522 (577)
Q Consensus       446 g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  522 (577)
                      |++++|...|++..+....+...  .+..+.. .....|+.++|+..|++..+..  |+.....         +....+.
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~  416 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQ  416 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHH
Confidence            99999999999988754322211  1222222 2346788999999999888743  3332222         1223445


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008105          523 QVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       523 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (577)
                      +++++.++.. +.++.+|..+...+...|++++|++.+++.++.++.
T Consensus       417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            5666655432 446778889999999999999999999999987664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=2.4e-16  Score=152.60  Aligned_cols=266  Identities=10%  Similarity=0.025  Sum_probs=154.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +...+..+...+...|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            44556677788888899999999998888765 4467788888888888888888888888887764 456778888888


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL--------------IE-QVCKQCGIARAIEVLDDMAIEGCSPDIVTY  295 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  295 (577)
                      .+...|++++|.+.++++.+.. +.+...+..+              .. .+...|++++|.+.++++.... +.+...+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence            8888888888888888887653 2222222222              11 1334444555555555554432 2234444


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008105          296 NSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKY  375 (577)
Q Consensus       296 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  375 (577)
                      ..+...+...|++++|...++++.+.                                   . +.+...+..+...+.+.
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~  219 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVEL-----------------------------------R-PDDAQLWNKLGATLANG  219 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh-----------------------------------C-CCcHHHHHHHHHHHHHc
Confidence            44445555555555555555544433                                   2 12344444555555555


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC-----------CHHHHHHHHHHHHh
Q 008105          376 GLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP-----------CLITYNTLIDGLAK  444 (577)
Q Consensus       376 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~  444 (577)
                      |++++|...++++.+.. +.+..++..+...+.+.|++++|...++.+.......           +...|..+..++.+
T Consensus       220 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          220 NRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            55555555555544432 2334445555555555555555555555444332110           24455555555555


Q ss_pred             cCCHHHHHHHHHH
Q 008105          445 KGCMEKAMVLYGQ  457 (577)
Q Consensus       445 ~g~~~~A~~~~~~  457 (577)
                      .|++++|..++++
T Consensus       299 ~g~~~~A~~~~~~  311 (327)
T 3cv0_A          299 MNRPDLVELTYAQ  311 (327)
T ss_dssp             TTCHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHH
Confidence            5555555555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.75  E-value=5e-16  Score=147.40  Aligned_cols=250  Identities=10%  Similarity=0.043  Sum_probs=119.9

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 008105          163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI  242 (577)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~  242 (577)
                      ...|+++.|+..++................+.++|...|++++|...++..    -+|+..++..+...+...++.++|+
T Consensus        10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence            344555555554444332211111122333445555555555555444321    1344445555555555555555555


Q ss_pred             HHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          243 GFWKDQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       243 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      +.++++...+. |.+...+..+...+...|++++|.+.+++      +.+...+..++..+.+.|++++|.+.++++.+.
T Consensus        86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  159 (291)
T 3mkr_A           86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ  159 (291)
T ss_dssp             HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            55555554432 22344444444555555555555555544      234445555555555555555555555555544


Q ss_pred             CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 008105          322 GMEPNSITY---NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIV  398 (577)
Q Consensus       322 g~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~  398 (577)
                      .  |+....   ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++.++.. +.++.
T Consensus       160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~  235 (291)
T 3mkr_A          160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE  235 (291)
T ss_dssp             C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence            2  322111   11222233345555555555555554 23455555555555566666666666665555543 33455


Q ss_pred             HHHHHHHHHHhcCChhH-HHHHHHHHhhC
Q 008105          399 TYNTVLGALCKEGMLNE-ALQLLHLLNGS  426 (577)
Q Consensus       399 ~~~~li~~~~~~g~~~~-A~~~~~~~~~~  426 (577)
                      ++..++..+...|+.++ +.++++++.+.
T Consensus       236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          236 TLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            55555555555555543 34555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=6.5e-17  Score=156.89  Aligned_cols=364  Identities=10%  Similarity=0.077  Sum_probs=176.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      +++.+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+..++...+.  .+++.+.+.++
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li  101 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI  101 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHH
Confidence            34469999999999999999999999653      57779999999999999999999988887774  45678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      .+|.+.|+++++.++++       .|+..+|+.+...|...|++++|..+|..+         ..|..++..+.+.|+++
T Consensus       102 ~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq  165 (449)
T 1b89_A          102 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ  165 (449)
T ss_dssp             -------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHH
T ss_pred             HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHH
Confidence            99999999999988884       478889999999999999999999999976         37999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105          275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN  354 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  354 (577)
                      +|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+.-...++..|.+.|.+++|..+++...
T Consensus       166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999988      27899999999999999999996554432     2334445578899999999999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008105          355 EASHSPTVFTYNILINGLCKY--GLVDRAINSFNQMVSKNCQP------DIVTYNTVLGALCKEGMLNEALQLLHLLNGS  426 (577)
Q Consensus       355 ~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  426 (577)
                      ... +.....|+-+.-+|++-  ++..+.++.|..-  .+++|      +...|..+.-.|.+.++++.|....-+-...
T Consensus       235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~  311 (449)
T 1b89_A          235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD  311 (449)
T ss_dssp             TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred             CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence            765 56778888888888874  3455555555422  12233      4667888999999999999887643222111


Q ss_pred             C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          427 S-----------CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       427 ~-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      .           -..+...|-..+.-|.... +..--.++. .....  .|   .+..+..+.+.|++.-+..++..+..
T Consensus       312 a~~~~~f~~~~~kv~n~elyYkai~fyl~~~-p~~l~~ll~-~l~~~--ld---~~r~v~~~~~~~~l~l~~~yl~~v~~  384 (449)
T 1b89_A          312 AWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLM-VLSPR--LD---HTRAVNYFSKVKQLPLVKPYLRSVQN  384 (449)
T ss_dssp             TCCHHHHHHHHHHCSSTHHHHHHHHHHHHHC-GGGHHHHHH-HHGGG--CC---HHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred             hhhhHHHHHHHhchhHHHHHHHHHHHHHhcC-HHHHHHHHH-HHHhc--cC---cHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            0           0223334444444444211 111111111 11100  11   13344455566666666666666554


Q ss_pred             CCCCccHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105          496 RGNKMRNSAYRLVIHGLCKSKKVDMAIQVLE  526 (577)
Q Consensus       496 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  526 (577)
                      .+.   ...=.++-..|....+++.-..-.+
T Consensus       385 ~n~---~~vnealn~l~ieeed~~~lr~si~  412 (449)
T 1b89_A          385 HNN---KSVNESLNNLFITEEDYQALRTSID  412 (449)
T ss_dssp             TCC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhH---HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            432   2333345556667777766555444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=5e-15  Score=151.40  Aligned_cols=392  Identities=10%  Similarity=-0.018  Sum_probs=255.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARR--------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS-----  181 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----  181 (577)
                      .....||.|...+...|++++|++.|++..+.        ..+....+|+.+...|...|++++|...+++..+.     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34578999999999999999999999987652        12234668899999999999999999999988653     


Q ss_pred             C-C-CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 008105          182 G-G-VPDTITYNMMVGGLCKR--GQIRSAIALLDEMSVSGCEPDVITYNTILRT---MFDNGKFKQAIGFWKDQLRKGCP  254 (577)
Q Consensus       182 g-~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~~~~~~A~~~~~~~~~~~~~  254 (577)
                      + . .....++..+..++.+.  +++++|.+.|++..+.. +.+...+..+..+   +...++.++|++.+++.++.. +
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence            1 1 12356676666666654  46999999999998764 3456666665555   345688899999999988764 5


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105          255 PYLITYTILIEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY  330 (577)
Q Consensus       255 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  330 (577)
                      .+...+..+...+..    .++.++|.+.+++..... +.+..++..+...|...|++++|...+++..+... -+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence            566777666655554    467889999999988764 44678889999999999999999999999988732 245566


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          331 NTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKE  410 (577)
Q Consensus       331 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~  410 (577)
                      ..+..+|...+...         ....       ...........+..+.|...+++..+.. +.+..++..+...+...
T Consensus       285 ~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~  347 (472)
T 4g1t_A          285 CQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA  347 (472)
T ss_dssp             HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence            66665554321111         1100       0001111112234577888888887764 45566778888889999


Q ss_pred             CChhHHHHHHHHHhhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          411 GMLNEALQLLHLLNGSSCSPCLI--TYNTLID-GLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       411 g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  487 (577)
                      |++++|...|++..+....+...  .+..+.. .....|++++|+..|++..+.  .|+......         ..+.+.
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~  416 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ  416 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence            99999999999887765333221  2222222 234678999999999998874  455433222         233445


Q ss_pred             HHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH
Q 008105          488 DLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-YKPDDTV  539 (577)
Q Consensus       488 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~  539 (577)
                      +++++....+ +.+..+|..+...+...|++++|++.|++.++.+ ..|++..
T Consensus       417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            5666655543 3367788999999999999999999999998743 3444443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.75  E-value=4.6e-18  Score=177.64  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          186 DTITYNMMVGGLCKRGQIRSAIALLDEMSV---SGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI  262 (577)
Q Consensus       186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  262 (577)
                      -..+||+||++||+.|++++|.++|++|.+   .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            456899999999999999999999988764   47889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------HHHHHHHHH
Q 008105          263 LIEQVCKQCG-IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN------SITYNTLLH  335 (577)
Q Consensus       263 l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~  335 (577)
                      +|.++|+.|+ .++|.++|++|...|+.||..+|+.++.+..+.+    +++..+++ ..+..|+      ..+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999887 4788899999999999999999998887665543    33333333 2344443      445566677


Q ss_pred             HHHccC
Q 008105          336 SLGSRG  341 (577)
Q Consensus       336 ~~~~~g  341 (577)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            777655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=1.4e-15  Score=144.36  Aligned_cols=276  Identities=13%  Similarity=0.101  Sum_probs=217.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      |+.....|++..|+..++......+.+.......+.++|...|+++.|+..++..    -+|+..++..+...+...|+.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence            4667788999999999987655432222345566789999999999999876542    366788889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                      ++|.+.++++...+..| +...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.|++
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            99999999998776434 667777888999999999999999987      56888999999999999999999999999


Q ss_pred             HHHcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 008105          283 MAIEGCSPDIVTY---NSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS  359 (577)
Q Consensus       283 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  359 (577)
                      +....  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +
T Consensus       156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p  231 (291)
T 3mkr_A          156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S  231 (291)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            99874  553211   223344555699999999999999873 4577889999999999999999999999998875 4


Q ss_pred             CCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008105          360 PTVFTYNILINGLCKYGLVDR-AINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ  418 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  418 (577)
                      .+..++..++..+...|+.++ +.++++++.+.. +.++.+    .+...+.+.++++..
T Consensus       232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL  286 (291)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence            578889999999999999876 578999988763 333322    233444455555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=3.2e-13  Score=145.89  Aligned_cols=375  Identities=11%  Similarity=0.105  Sum_probs=279.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .+....+.|+.+..+. +..+..+...+....       ....+...+...|.+++|.++|++..     ......+.++
T Consensus      1020 ~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi 1086 (1630)
T 1xi4_A         1020 EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI 1086 (1630)
T ss_pred             ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH
Confidence            4567777788777777 456666666554422       13447788889999999999999962     1222233333


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      .   ..|++++|.++.++..      +..+|..+..++.+.|++++|++.|.+.      .|...|..++..+.+.|+++
T Consensus      1087 e---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE 1151 (1630)
T 1xi4_A         1087 E---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE 1151 (1630)
T ss_pred             H---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH
Confidence            3   7788999999988663      5788999999999999999999999663      47888889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105          275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN  354 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  354 (577)
                      +|.+.|....+..  ++....+.++.+|++.+++++.....    +   .++...|..+...|...|++++|..+|... 
T Consensus      1152 EAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA- 1221 (1630)
T 1xi4_A         1152 ELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 1221 (1630)
T ss_pred             HHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-
Confidence            9999999887764  34334446899999999988644432    1   456677778999999999999999999985 


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105          355 EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT  434 (577)
Q Consensus       355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  434 (577)
                              ..|..+...|.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......+     ..+...
T Consensus      1222 --------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~de 1282 (1630)
T 1xi4_A         1222 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 1282 (1630)
T ss_pred             --------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHH
Confidence                    36999999999999999999999876      36788999999999999999988766543     335667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCc------cHHHHH
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA--DQVEEAVDLLKEIGKRGNKM------RNSAYR  506 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~  506 (577)
                      +..++..|.+.|.+++|+.+++...... +.....|+.+...|++.  ++..++.++|..-..  +++      +...|.
T Consensus      1283 Leeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A         1283 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWA 1359 (1630)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHH
Confidence            7789999999999999999998877543 33455676677777654  455566666654322  222      456788


Q ss_pred             HHHHHHHhcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008105          507 LVIHGLCKSKKVDMAIQVL-------------ELMISSRYKPDDTVFSTIVKKVADDG  551 (577)
Q Consensus       507 ~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~p~~~~~~~l~~~~~~~g  551 (577)
                      .++..|.+.|+++.|....             ++.+  .-..|++.|...+.-|...+
T Consensus      1360 elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1360 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHHHHHHHHHHhhC
Confidence            9999999999999988322             2222  12446777766666666555

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.72  E-value=1e-17  Score=175.01  Aligned_cols=119  Identities=17%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          396 DIVTYNTVLGALCKEGMLNEALQLLHLLNG---SSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRT  472 (577)
Q Consensus       396 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  472 (577)
                      -..+|+++|++|++.|++++|.++|++|.+   .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345666666666666666666666655542   35666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh
Q 008105          473 LIWGFCRADQ-VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK  514 (577)
Q Consensus       473 li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  514 (577)
                      +|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            6666666665 35566666666666666666666666654443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.69  E-value=1.1e-14  Score=147.26  Aligned_cols=347  Identities=12%  Similarity=0.028  Sum_probs=205.5

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI---EKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+...+.+.|++++|.++|++..+.|   +...+..+...|...|+.   ++|.++|++..+.    ++..+..+...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            46777888899999999999888875   344555666666777777   8888888888753    5556666666555


Q ss_pred             hcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105          199 KRG-----QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK---QAIGFWKDQLRKGCPPYLITYTILIEQVCKQ  270 (577)
Q Consensus       199 ~~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (577)
                      ..|     ++++|.+.|++..+.| .++  .+..|...|...+..+   ++.+.+......|   +......+...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            554     6788888888888766 223  6666777776655433   3445555554444   345566666777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc----CCH
Q 008105          271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG---KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR----GCW  343 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~  343 (577)
                      +.++++.+....+.+.-...+...+..|...|.+.|   +.++|+..|++..+.| .++...+..+...|...    +++
T Consensus       155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence            755444443322222211223347777777888888   7888888888888776 34555545566666544    677


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhH
Q 008105          344 DAVDKILDIMNEASHSPTVFTYNILING-L--CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG-----MLNE  415 (577)
Q Consensus       344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~  415 (577)
                      ++|...|+... .   -+...+..+... +  ...+++++|+..|++..+.|   +...+..+...|. .|     ++++
T Consensus       234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            88888888776 3   345556666665 3  35677888888888877765   5666666666665 44     7777


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008105          416 ALQLLHLLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAV  487 (577)
Q Consensus       416 A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~  487 (577)
                      |...|+... .|   +...+..|...|..    ..++++|...|++..+.|.   ......|...|..    ..+.++|.
T Consensus       306 A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~  378 (452)
T 3e4b_A          306 AEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAY  378 (452)
T ss_dssp             HHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred             HHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            777777766 33   45566666666655    3377777777777776552   2334445555543    34667777


Q ss_pred             HHHHHHhhCC
Q 008105          488 DLLKEIGKRG  497 (577)
Q Consensus       488 ~~~~~m~~~~  497 (577)
                      .+|+...+.|
T Consensus       379 ~~~~~A~~~g  388 (452)
T 3e4b_A          379 VFSQLAKAQD  388 (452)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHCC
Confidence            7777766655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.67  E-value=6e-15  Score=149.33  Aligned_cols=379  Identities=12%  Similarity=0.025  Sum_probs=256.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI---RSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +...+.+.|++++|.++|++..+.|   +...+..+...|...|+.   ++|.+.|++..+.    +...+..+...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            5667788999999999999998876   344555677777778888   8999999998843    66677777775655


Q ss_pred             CC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105          235 NG-----KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI---ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG  306 (577)
Q Consensus       235 ~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  306 (577)
                      .+     ++++|++.|++..+.|.+   ..+..|...|...+..   .++.+.+......|   +...+..|...|...+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~  155 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG  155 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            55     788999999999987733   3677777777766553   34555566555554   4567777888888888


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHH
Q 008105          307 KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG---CWDAVDKILDIMNEASHSPTVFTYNILINGLCKY----GLVD  379 (577)
Q Consensus       307 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~  379 (577)
                      .++++......+.+.....+...+..+...|...|   +.++|.+.|+...+.|. ++...+..+...|...    ++++
T Consensus       156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence            65554444333322211223347888888888899   89999999999999874 4555556777777655    7999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 008105          380 RAINSFNQMVSKNCQPDIVTYNTVLGA-L--CKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG-----CMEKA  451 (577)
Q Consensus       380 ~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A  451 (577)
                      +|+..|++.. .|   ++..+..+... +  ...+++++|...|++..+.|   +...+..|...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            9999999988 43   66667777766 4  46899999999999999877   6777888888877 55     99999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh----cCChHHHHH
Q 008105          452 MVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK----SKKVDMAIQ  523 (577)
Q Consensus       452 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~  523 (577)
                      ...|++.. .   -+...+..|...|..    ..++++|.++|++..+.|.   ......+...|..    ..++++|..
T Consensus       307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            99999887 4   467788888877776    3489999999999988763   3455556666664    468999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          524 VLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       524 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      +++...+.|. ++.......+......++.++|.++.++..+.
T Consensus       380 ~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          380 FSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            9999998763 33332222333333345667788887776653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.4e-14  Score=129.63  Aligned_cols=200  Identities=13%  Similarity=0.021  Sum_probs=134.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ++++..+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..+++.++.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3566777888888888888888888888888764 3377778888888888888888888888888765 4466777778


Q ss_pred             HHHHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          194 VGGLCKR-----------GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTI  262 (577)
Q Consensus       194 i~~~~~~-----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  262 (577)
                      ...+.+.           |++++|...|++..+.. +.+...|..+...+...|++++|+..|++.++..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            8888777           77777777777776653 3356667777777777777777777777777665  56667777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          263 LIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL  319 (577)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  319 (577)
                      +...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            7777777777777777777776653 2345666666677777777777776666543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=3.8e-14  Score=131.87  Aligned_cols=224  Identities=11%  Similarity=0.073  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PD----TITY  190 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~  190 (577)
                      ...+..+...+...|++++|...|+++.+..  .+..++..+...+...|++++|.+.+++..+....  ++    ...|
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3456667777777777777777777777765  56667777777777777777777777776654211  11    4556


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008105          191 NMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ  270 (577)
Q Consensus       191 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  270 (577)
                      ..+...|.+.|++++|.+.|++..+.  .|+.       ..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            66666666666666666666666553  2332       22334455555555555555431 22334444455555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 008105          271 CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKIL  350 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~  350 (577)
                      |++++|.+.++++.... +.+...|..+...+.+.|++++|...+++..+.. +.+..++..+..++...|++++|...+
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  230 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL  230 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            55555555555554432 2234444444555555555555555555444432 112334444444444444444444444


Q ss_pred             HHHH
Q 008105          351 DIMN  354 (577)
Q Consensus       351 ~~~~  354 (577)
                      +...
T Consensus       231 ~~a~  234 (258)
T 3uq3_A          231 DAAR  234 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.2e-13  Score=128.52  Aligned_cols=94  Identities=13%  Similarity=0.017  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC  513 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  513 (577)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  218 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI  218 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence            33444444444444444444444444321 1233444444444444444444444444444332 112334444444444


Q ss_pred             hcCChHHHHHHHHHHH
Q 008105          514 KSKKVDMAIQVLELMI  529 (577)
Q Consensus       514 ~~g~~~~A~~~~~~m~  529 (577)
                      ..|++++|.+.+++..
T Consensus       219 ~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          219 AVKEYASALETLDAAR  234 (258)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            4444444444444444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=5e-14  Score=127.52  Aligned_cols=198  Identities=16%  Similarity=0.056  Sum_probs=119.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLI  439 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li  439 (577)
                      ++...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            344555555566666666666666666665543 4455556666666666666666666666655543 33455556666


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHH
Q 008105          440 DGLAKK-----------GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLV  508 (577)
Q Consensus       440 ~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l  508 (577)
                      ..+...           |++++|...|++..+.. +-+...+..+...+...|++++|.+.|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            666666           77777777777777642 2246667777777777777777777777777655  466677777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (577)
                      ..++...|++++|+..+++.++.. +.+...+..+...+.+.|++++|++.+++.
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            777777777777777777777532 335666777777777777777777777654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.62  E-value=2e-11  Score=127.75  Aligned_cols=225  Identities=8%  Similarity=-0.072  Sum_probs=169.1

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008105          344 DAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAI-NSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHL  422 (577)
Q Consensus       344 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  422 (577)
                      +.+..+|++.... .+-....|-..+..+.+.|+.++|. ++|++.... ++.+...|...+....+.|+++.|..+|+.
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455678777765 3457788888888888889998996 999999875 356677777888888899999999999998


Q ss_pred             HhhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 008105          423 LNGSS---------CSPC------------LITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPDDITHRTLIWGFCRA  480 (577)
Q Consensus       423 ~~~~~---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~  480 (577)
                      +....         ..|+            ...|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+.
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence            87531         0131            346888888888889999999999999875 2 12233444333333344


Q ss_pred             -CCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105          481 -DQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKP--DDTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       481 -g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~  557 (577)
                       ++.+.|.++|+...+. .+-+...|...++.....|+.+.|..+|++.+.....+  ....|...++--.+.|+.+.+.
T Consensus       483 ~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~  561 (679)
T 4e6h_A          483 SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR  561 (679)
T ss_dssp             TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence             4589999999998875 23356677788888888999999999999998653222  3467888888888999999999


Q ss_pred             HHHHHHHHcCCCCCc
Q 008105          558 KLWQKLIEWKVFEKG  572 (577)
Q Consensus       558 ~~~~~~~~~~~~~~~  572 (577)
                      ++.+++.+..|..+.
T Consensus       562 ~v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          562 TLEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHHSTTCCH
T ss_pred             HHHHHHHHhCCCCcH
Confidence            999999997776543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.61  E-value=2.3e-12  Score=121.11  Aligned_cols=224  Identities=11%  Similarity=-0.021  Sum_probs=148.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      ++.++..+...|...|++++|.+.|++..+.   .+..++..+...|..    .+++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4566777777777778888888888777773   245666677777777    777777777777777664   566677


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          192 MMVGGLCK----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLITYTIL  263 (577)
Q Consensus       192 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  263 (577)
                      .+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|++.|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777777    777777777777776653   56666777777776    777777777777776654   45556666


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          264 IEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLH  335 (577)
Q Consensus       264 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  335 (577)
                      ...+..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|+..+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            666666    666777777776666553   34555566666666    666666666666666553   2444555555


Q ss_pred             HHHc----cCCHHHHHHHHHHHHhCC
Q 008105          336 SLGS----RGCWDAVDKILDIMNEAS  357 (577)
Q Consensus       336 ~~~~----~g~~~~a~~~~~~~~~~~  357 (577)
                      .|..    .+++++|.+.++...+.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            5555    556666666666555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=5.8e-13  Score=123.51  Aligned_cols=201  Identities=13%  Similarity=0.012  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            5778889999999999999999999998874 3467788888899999999999999999988775 4467788888888


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      |...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999888732234 46677778888888888888888888887753 4467777788888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      |.+.++++.... +.+...+..+...+...|+.++|.+.++++.+.
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            888888877653 345666777777778888888888888877765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.60  E-value=3.5e-12  Score=119.87  Aligned_cols=223  Identities=9%  Similarity=-0.045  Sum_probs=134.2

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          291 DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS----RGCWDAVDKILDIMNEASHSPTVFTYN  366 (577)
Q Consensus       291 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  366 (577)
                      +..++..+...+...|++++|...|++..+.+   +..++..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            44556666666666777777777777666532   34555556666666    666666666666666653   455666


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          367 ILINGLCK----YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK----EGMLNEALQLLHLLNGSSCSPCLITYNTL  438 (577)
Q Consensus       367 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l  438 (577)
                      .+...|..    .+++++|+..|++..+.+   +..++..+...|..    .+++++|...++...+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            66666666    666666666666666653   55556666666666    666666666666665544   34455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHH
Q 008105          439 IDGLAK----KGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIH  510 (577)
Q Consensus       439 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~  510 (577)
                      ...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+.   ...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence            555555    566666666666666543   34555555566666    6666666666666555431   344455555


Q ss_pred             HHHh----cCChHHHHHHHHHHHHC
Q 008105          511 GLCK----SKKVDMAIQVLELMISS  531 (577)
Q Consensus       511 ~~~~----~g~~~~A~~~~~~m~~~  531 (577)
                      .|..    .+++++|.+.+++..+.
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHc
Confidence            5555    56666666666665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=1.1e-12  Score=119.00  Aligned_cols=203  Identities=11%  Similarity=0.012  Sum_probs=143.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      ++..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            45677788888888888888888888887764 3356777777788888888888888888877764 346667777777


Q ss_pred             HHHhc-CChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          196 GLCKR-GQIRSAIALLDEMSVSGCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       196 ~~~~~-g~~~~A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      .+... |++++|.+.++++.+.+..| +...+..+...+...|++++|++.++++.+.. +.+...+..+...+.+.|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            77788 88888888887777622223 25666777777777777777777777776653 44566677777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ++|.+.++++.......+...+..+...+...|+.++|..+++.+.+.
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            777777777666532135555666666667777777777777666544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.59  E-value=4.1e-11  Score=125.37  Aligned_cols=427  Identities=10%  Similarity=0.011  Sum_probs=297.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR---IEKASKVLQIMVMSG-GVPDTITY  190 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~~~~~~~  190 (577)
                      .|..+|..+++.+.+.+.++.+..+|++++.. ++.....|...+..-.+.++   ++.+.++|++.+... .+|++..|
T Consensus        64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            47899999999999999999999999999997 56688889999998889898   999999999999874 14888999


Q ss_pred             HHHHHHHHhcCCh--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh---------CCChHHHHHHHHHHHH
Q 008105          191 NMMVGGLCKRGQI--------RSAIALLDEMSV-SGC-EP-DVITYNTILRTMFD---------NGKFKQAIGFWKDQLR  250 (577)
Q Consensus       191 ~~li~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~  250 (577)
                      ...+....+.++.        +...++|+.... .|. .+ +...|...+.....         +++++.+..+|++.+.
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            9988876665554        334578887654 465 44 46788888876543         3457788999999885


Q ss_pred             CCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHH--cCC----C-----------C--C------H
Q 008105          251 KGCPPYLITYTILIEQVCK-------------QCGIARAIEVLDDMAI--EGC----S-----------P--D------I  292 (577)
Q Consensus       251 ~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~-----------~--~------~  292 (577)
                      .....-..+|......-..             ..+++.|...+.++..  .++    +           |  +      .
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql  302 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL  302 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence            3111122333222111111             1123445555544322  111    1           1  0      1


Q ss_pred             hhHHHHHHHHHhcC-------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHH
Q 008105          293 VTYNSLVNFSCKQG-------KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD-KILDIMNEASHSPTVFT  364 (577)
Q Consensus       293 ~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~  364 (577)
                      ..|...+..--..+       ..+.+..+|++++..- .-+...|...+..+...|+.++|. .+++..... .+.+...
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L  380 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence            34555554333322       1234567788887653 336678888888888889999996 999999874 3557777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008105          365 YNILINGLCKYGLVDRAINSFNQMVSKN---------CQPD------------IVTYNTVLGALCKEGMLNEALQLLHLL  423 (577)
Q Consensus       365 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~~  423 (577)
                      |-..+....+.|++++|.++|+++....         -.|+            ...|...+....+.|..+.|..+|..+
T Consensus       381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888999999999999999988641         0132            346888888888889999999999999


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--
Q 008105          424 NGSSCSPCLITYNTLIDGLAKK-GCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKM--  500 (577)
Q Consensus       424 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--  500 (577)
                      .+....+....|...+..-.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.|..+|++.......+  
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~  539 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL  539 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred             HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence            8761122233443333333344 4589999999999875 34467777888888888999999999999998864322  


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          501 RNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKV  547 (577)
Q Consensus       501 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  547 (577)
                      ....|...+..-.+.|+.+.+.++.+++.+.  .|+......+++-|
T Consensus       540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            4567888888889999999999999999874  34433333444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=6.6e-13  Score=123.11  Aligned_cols=201  Identities=12%  Similarity=-0.027  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          364 TYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLA  443 (577)
Q Consensus       364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  443 (577)
                      .+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|.
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence            34444444555555555555555544432 2344444555555555555555555555444432 223444555555555


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 008105          444 KKGCMEKAMVLYGQMMENGISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAI  522 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  522 (577)
                      ..|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555554422223 23444555555555555555555555554432 123444555555555555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          523 QVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       523 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      ..++++.+.. +.+...+..+...+...|++++|.++++++.+..+
T Consensus       196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            5555555421 23444555555555555666666655555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=8.7e-14  Score=130.85  Aligned_cols=221  Identities=10%  Similarity=-0.051  Sum_probs=141.0

Q ss_pred             cCChhhHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105          130 RGKLTDASKLIDIMARRNQI---PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA  206 (577)
Q Consensus       130 ~g~~~~A~~l~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  206 (577)
                      .|++++|+..|+++.+....   .+..++..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            46788888888888876321   245667777788888888888888888887765 34677788888888888888888


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          207 IALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      .+.|++..+.. +.+..++..+...+...|++++|.+.|+++.+..  |+.......+..+...|++++|...+++....
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            88888877653 3456777777777778888888888887777642  33333333334445567777777777666554


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105          287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEP---NSITYNTLLHSLGSRGCWDAVDKILDIMNEA  356 (577)
Q Consensus       287 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  356 (577)
                      . +++...+ .++..+...++.++|...+++........   +...+..+...+...|++++|...++...+.
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            2 2233333 35555666666666666666665431110   0234444555555555555555555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=8.4e-13  Score=129.48  Aligned_cols=249  Identities=8%  Similarity=0.019  Sum_probs=187.0

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR-IEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      +...|+.+...+.+.|++++|+..|+++++..+ -+..+|+.+...+.+.|+ +++|+..|+++++.. +.+...|+.+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            356788899999999999999999999998753 378888999999999996 999999999999876 45788899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCK-QCGI  273 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~  273 (577)
                      .++.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|++.|+++++.. +.+...|+.+...+.+ .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999988775 5578888888889999999999999999988864 5577888888888888 5554


Q ss_pred             HHH-----HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccC-----
Q 008105          274 ARA-----IEVLDDMAIEGCSPDIVTYNSLVNFSCKQG--KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRG-----  341 (577)
Q Consensus       274 ~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----  341 (577)
                      ++|     ++.|++..... +-+...|+.+...+.+.|  ++++|++.+.++ +.. ..+...+..+..+|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence            666     47777777653 235567777777777776  577777777776 321 334556666777776653     


Q ss_pred             ----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008105          342 ----CWDAVDKILDIM-NEASHSPTVFTYNILINGL  372 (577)
Q Consensus       342 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~  372 (577)
                          ..++|.++++.+ .+.. +.....|..+...+
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence                246777777776 4432 22334444444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.58  E-value=9.9e-14  Score=130.47  Aligned_cols=222  Identities=11%  Similarity=-0.043  Sum_probs=142.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105          164 RIDRIEKASKVLQIMVMSGG---VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ  240 (577)
Q Consensus       164 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  240 (577)
                      ..|++++|++.|+++.+...   +.+...|..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            44678888888888877532   1245667777788888888888888888877654 4467777778888888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      |++.|++.++.. +.+..++..+...+.+.|++++|.+.|+++...  .|+.......+..+...|++++|...+++...
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888888777653 445667777777777777777777777777765  34433444444455566777777777766655


Q ss_pred             CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105          321 RGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS---PTVFTYNILINGLCKYGLVDRAINSFNQMVSK  391 (577)
Q Consensus       321 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  391 (577)
                      .. +++...+ .++..+...++.++|...++...+....   .+...+..+...|.+.|++++|...|++..+.
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            42 2222222 3455555666666666666665543211   01345555666666666666666666666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=6.4e-13  Score=124.72  Aligned_cols=234  Identities=10%  Similarity=0.012  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD--TITYNMMVG  195 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~  195 (577)
                      ..+......+...|++++|+..|+++.+..+ .+...+..+...+...|++++|++.+++..+.+..++  ...|..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            3455667777888888888888888877642 3555777777788888888888888888777331121  234677777


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|++.|++.++. .+.+...+..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            7777888888888887777653 345567777777777777777777777776654 24455556555523334457777


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCCC------HHHHHHHHHHHHccCCHHH
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK---YDDAVLVINNLLSRG-MEPN------SITYNTLLHSLGSRGCWDA  345 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~  345 (577)
                      |.+.|+++.+.. +.+...+..+...+...|+   +++|...+++..+.. -.|+      ..+|..+...|...|++++
T Consensus       161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (272)
T 3u4t_A          161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK  239 (272)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence            777777766653 2234555555555555555   555555555554321 0111      1233334444444444444


Q ss_pred             HHHHHHHHHh
Q 008105          346 VDKILDIMNE  355 (577)
Q Consensus       346 a~~~~~~~~~  355 (577)
                      |...++...+
T Consensus       240 A~~~~~~al~  249 (272)
T 3u4t_A          240 ADAAWKNILA  249 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444444444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=1.2e-12  Score=118.88  Aligned_cols=203  Identities=10%  Similarity=-0.063  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          362 VFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDG  441 (577)
Q Consensus       362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~  441 (577)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            3344444555555555555555555554432 2334455555555555555555555555554432 3344455555555


Q ss_pred             HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105          442 LAKK-GCMEKAMVLYGQMMENGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD  519 (577)
Q Consensus       442 ~~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  519 (577)
                      +... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+... .+...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHH
Confidence            5555 555555555555554211222 34455555555555555555555555554321 13445555555555556666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          520 MAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       520 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      +|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            666665555542211344445555555555566666665555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=2.2e-13  Score=125.46  Aligned_cols=203  Identities=8%  Similarity=0.028  Sum_probs=150.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ......|..+...+...|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+
T Consensus        20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   97 (243)
T 2q7f_A           20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA   97 (243)
T ss_dssp             ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence            3456778888999999999999999999998864 3478888888999999999999999999998875 4577888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      ...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence            999999999999999999988764 4577888888888999999999999999888763 45677888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ++|.+.++++.... +.+..++..+...+.+.|++++|...++++.+.
T Consensus       176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            88888888887763 335677888888888888888888888888775

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=1.4e-12  Score=122.42  Aligned_cols=245  Identities=12%  Similarity=0.051  Sum_probs=150.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 008105          295 YNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP--TVFTYNILINGL  372 (577)
Q Consensus       295 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~  372 (577)
                      +......+...|++++|+..+++..+... .+...+..+..++...|++++|...++...+....+  ....|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            44455556666666666666666665531 133355566666666666666666666666532111  123366677777


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAM  452 (577)
Q Consensus       373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  452 (577)
                      ...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776653 3455667777777777777777777777776653 445566666662333345778888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC-CCcc------HHHHHHHHHHHHhcCChHHHH
Q 008105          453 VLYGQMMENGISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRG-NKMR------NSAYRLVIHGLCKSKKVDMAI  522 (577)
Q Consensus       453 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~  522 (577)
                      +.|+++.+.. +.+...+..+...+...|+   +++|...+++..+.. ..|+      ...|..+...|...|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8887777642 2235666667777777776   667777777765421 1122      245666777777788888888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHH
Q 008105          523 QVLELMISSRYKPDDTVFSTIV  544 (577)
Q Consensus       523 ~~~~~m~~~~~~p~~~~~~~l~  544 (577)
                      +.++++.+.. +-+...+..+.
T Consensus       242 ~~~~~al~~~-p~~~~a~~~l~  262 (272)
T 3u4t_A          242 AAWKNILALD-PTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHC
T ss_pred             HHHHHHHhcC-ccHHHHHHHhh
Confidence            8888777532 22344444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1e-12  Score=128.86  Aligned_cols=249  Identities=12%  Similarity=0.042  Sum_probs=193.0

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ-IRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      +...|..+...+.+.|++++|++.++++++.. +-+...|+.+...+...|+ +++|+..|+++.+.. +.+...|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            34567777888889999999999999999876 4578889999999999997 999999999998775 55788999999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCH
Q 008105          230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK-QGKY  308 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~  308 (577)
                      .++...|++++|+..|+++++.. +-+...|..+...+.+.|++++|++.+++++... +.+...|+.+..++.+ .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence            99999999999999999998874 6688889999999999999999999999998875 3367888888888888 5655


Q ss_pred             HHH-----HHHHHHHhhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----
Q 008105          309 DDA-----VLVINNLLSRGMEPNSITYNTLLHSLGSRG--CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYG-----  376 (577)
Q Consensus       309 ~~A-----~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----  376 (577)
                      ++|     +..+++.+.... -+...|..+...+...|  ++++|.+.+..+ +. .+.+...+..+...|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            777     477777776532 24567777777777777  578888888777 33 3456677778888887764     


Q ss_pred             ----CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 008105          377 ----LVDRAINSFNQM-VSKNCQPDIVTYNTVLGAL  407 (577)
Q Consensus       377 ----~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~  407 (577)
                          ..++|+++|+++ .+.+ +.....|..+...+
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence                247888888887 5542 33344455444443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=5.2e-13  Score=122.95  Aligned_cols=199  Identities=13%  Similarity=0.094  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          327 SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA  406 (577)
Q Consensus       327 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  406 (577)
                      ...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|+..++++.+.. +.+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            3445555556666666666666666666543 2345566666666666666666666666666543 3355556666666


Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008105          407 LCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEA  486 (577)
Q Consensus       407 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  486 (577)
                      +...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666655543 3345555666666666666666666666665432 23455555566666666666666


Q ss_pred             HHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          487 VDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       487 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .+.++++.+... .+..++..+...+...|++++|.+.++++.+
T Consensus       179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            666666555321 2344555566666666666666666666654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=8.7e-13  Score=132.03  Aligned_cols=202  Identities=13%  Similarity=0.075  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDF----HFCINLIRGLIRIDRIEKASKVLQIMVMS----G-GVPDT  187 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~  187 (577)
                      ...+..+...+...|++++|+..|+++.+.+.. +.    .++..+...+...|++++|.+.+++..+.    + .+...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            345567788899999999999999999887432 33    46778888889999999999999887653    1 12234


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhCCC-----------------hHHHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVS----G-CEPDVITYNTILRTMFDNGK-----------------FKQAIGFW  245 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~~~~~~li~~~~~~~~-----------------~~~A~~~~  245 (577)
                      ..+..+...|...|++++|.+.+++..+.    + ......++..+...|...|+                 +++|++.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            56777888888889998888888876543    1 01224466667777777777                 77777766


Q ss_pred             HHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHH
Q 008105          246 KDQLRK----GC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PD----IVTYNSLVNFSCKQGKYDDAVLVI  315 (577)
Q Consensus       246 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~  315 (577)
                      ++..+.    +. +....++..+...+...|++++|.+.+++....... ++    ...+..+...|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            665432    10 111234555555566666666666666555432100 01    114444555555555555555555


Q ss_pred             HHHh
Q 008105          316 NNLL  319 (577)
Q Consensus       316 ~~m~  319 (577)
                      ++..
T Consensus       287 ~~al  290 (411)
T 4a1s_A          287 KRTL  290 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=6.8e-13  Score=132.39  Aligned_cols=275  Identities=12%  Similarity=0.040  Sum_probs=171.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMS----GGV-  184 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-  184 (577)
                      .+....+......+.+.|++++|...|+++.+.+.. +    ..++..+...+...|++++|...+++....    +.. 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345667788889999999999999999999887432 3    356777888889999999999998887543    211 


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhCCC--------------------hH
Q 008105          185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC-EPD----VITYNTILRTMFDNGK--------------------FK  239 (577)
Q Consensus       185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~  239 (577)
                      ....++..+...|...|++++|...+++..+... .++    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            1245677788888889999999988887764310 012    4467777778888888                    77


Q ss_pred             HHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHH
Q 008105          240 QAIGFWKDQLRK----GC-PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SPD----IVTYNSLVNFSCKQGKYD  309 (577)
Q Consensus       240 ~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~  309 (577)
                      +|.+.+++....    +. +....++..+...+...|++++|.+.+++...... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            777777765442    10 11133566666677777777777777776654210 011    125566666666777777


Q ss_pred             HHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHH
Q 008105          310 DAVLVINNLLSRGME-PN----SITYNTLLHSLGSRGCWDAVDKILDIMNEASH----S-PTVFTYNILINGLCKYGLVD  379 (577)
Q Consensus       310 ~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~-~~~~~~~~li~~~~~~g~~~  379 (577)
                      +|...+++..+.... ++    ..++..+...+...|++++|...++...+...    . ....++..+...|.+.|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            777666665432100 01    23445555556666666666666555443210    0 01334445555555555655


Q ss_pred             HHHHHHHHHH
Q 008105          380 RAINSFNQMV  389 (577)
Q Consensus       380 ~A~~~~~~m~  389 (577)
                      +|...+++..
T Consensus       325 ~A~~~~~~al  334 (406)
T 3sf4_A          325 QAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.49  E-value=1.2e-12  Score=130.97  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHH
Q 008105          258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSR----GMEP-NSI  328 (577)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~  328 (577)
                      ..+..+...+...|++++|.+.|+++...+. .+.    ..|..+...|...|++++|...+++..+.    +..| ...
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            3344555667777777888777777776531 122    35666777777777777777777766542    1111 223


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC
Q 008105          329 TYNTLLHSLGSRGCWDAVDKILDIMNEA----S-HSPTVFTYNILINGLCKYGL  377 (577)
Q Consensus       329 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~  377 (577)
                      ++..+...|...|++++|...+++..+.    + .+....++..+...|...|+
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            5555666666666666666666665432    1 11123345555556666666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.7e-12  Score=129.52  Aligned_cols=302  Identities=13%  Similarity=0.025  Sum_probs=153.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-C
Q 008105          185 PDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD----VITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCP-P  255 (577)
Q Consensus       185 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~  255 (577)
                      .....+......+...|++++|...|++..+.+ +.+    ...+..+...+...|++++|...+++....    +.+ .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            344455556666666677777777776666542 222    244555666666666666666666655432    101 1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          256 YLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLL  334 (577)
Q Consensus       256 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  334 (577)
                      ...++..+...+...|++++|...+++....... ++.                               .....++..+.
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~  134 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG  134 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence            1233444444555555555555555544432100 000                               00012333444


Q ss_pred             HHHHccCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105          335 HSLGSRGC--------------------WDAVDKILDIMNEA----SH-SPTVFTYNILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       335 ~~~~~~g~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                      ..+...|+                    +++|...++...+.    +. +....++..+...|...|++++|...+++..
T Consensus       135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  214 (406)
T 3sf4_A          135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL  214 (406)
T ss_dssp             HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred             HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44444444                    44444444433221    10 1112345566666667777777777766665


Q ss_pred             HCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHhhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          390 SKNC-QPD----IVTYNTVLGALCKEGMLNEALQLLHLLNGSS----CSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       390 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      +... .++    ..++..+...+...|++++|...+++.....    ..+ ...++..+...|...|++++|...+++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  294 (406)
T 3sf4_A          215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL  294 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4210 011    2255566666666677777766666554321    000 13455666667777777777777777665


Q ss_pred             HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHhcCCh
Q 008105          460 ENGI-SPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNK-MRNSAYRLVIHGLCKSKKV  518 (577)
Q Consensus       460 ~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~  518 (577)
                      +..- .++    ..++..+...|...|++++|.+.+++..+.    +.. ....++..+...+...|+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            4210 011    345666666777777777777777765431    111 1133445555555555544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.47  E-value=1.2e-11  Score=108.50  Aligned_cols=167  Identities=11%  Similarity=0.095  Sum_probs=121.5

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      ++.+|..+...|.+.|++++|++.|++.++..+ -+..++..+...+.+.|++++|.+.++...... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            456777888888888888888888888877643 367777777777888888888888887777664 345666666777


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .+...++++.|.+.+++..... +.+...+..+...+.+.|++++|++.|++.++.. |.+..+|..+...+.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7777778888877777776553 4456677777777777777777777777777653 4566677777777777777777


Q ss_pred             HHHHHHHHHHc
Q 008105          276 AIEVLDDMAIE  286 (577)
Q Consensus       276 A~~~~~~~~~~  286 (577)
                      |.+.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            77777777654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.46  E-value=1e-10  Score=111.97  Aligned_cols=187  Identities=10%  Similarity=0.023  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          379 DRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLI-TYNTLIDGLAKKGCMEKAMVLYGQ  457 (577)
Q Consensus       379 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~  457 (577)
                      ++|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4555555555442112233445555555555555555555555554431 11122 455555555555555555555555


Q ss_pred             HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 008105          458 MMENGISPDDITHRTLIWGFC-RADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-YKP  535 (577)
Q Consensus       458 m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p  535 (577)
                      .++.. +++...|........ ..|++++|.++|++..+... -+...|..++..+.+.|++++|..+|++.++.. +.|
T Consensus       160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            55432 122223322222211 13555555555555544321 134445555555555555555555555555431 233


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          536 --DDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       536 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                        ....|..++....+.|+.++|..+++++.+..+
T Consensus       238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence              234455555555555555555555555555433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=1.7e-12  Score=125.52  Aligned_cols=201  Identities=13%  Similarity=0.084  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMS----GG-VPDTI  188 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~  188 (577)
                      ..+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|.+.+++..+.    +. +....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34555677888888888888888888876422 3    356677778888888888888888776543    11 11245


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhCCC--------------------hHHHHH
Q 008105          189 TYNMMVGGLCKRGQIRSAIALLDEMSVSGC-EPD----VITYNTILRTMFDNGK--------------------FKQAIG  243 (577)
Q Consensus       189 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~A~~  243 (577)
                      .+..+...|...|++++|.+.+++..+... .++    ..++..+...+...|+                    +++|.+
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            667777777788888888887777653210 112    3356666666777777                    666666


Q ss_pred             HHHHHHHC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCCHHHHHH
Q 008105          244 FWKDQLRK----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCS-PD----IVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       244 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      .+++....    + .+....++..+...+...|++++|.+.+++....... ++    ..++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            66554431    1 0111224444555555556666555555554432000 00    1234444444555555555555


Q ss_pred             HHHHHh
Q 008105          314 VINNLL  319 (577)
Q Consensus       314 ~~~~m~  319 (577)
                      .+++..
T Consensus       245 ~~~~al  250 (338)
T 3ro2_A          245 YYKKTL  250 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=8.7e-11  Score=112.41  Aligned_cols=219  Identities=6%  Similarity=-0.066  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          134 TDASKLIDIMARRNQIPDFHFCINLIRGLIR-------IDRI-------EKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      ++|..+|++++... +.+...|..++..+..       .|++       ++|..+|++.++.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            46666666666652 3355566666555542       3553       5555555555552112234455555555555


Q ss_pred             cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPD-VI-TYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      .|++++|.++|++..+.  .|+ .. .|..+...+.+.|++++|.++|++.++.. +.+...|.........        
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~--------  180 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY--------  180 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHH--------
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------
Confidence            55555555555555543  222 22 45555555555555555555555554432 2222222222111111        


Q ss_pred             HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105          278 EVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEAS  357 (577)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  357 (577)
                                                ..|++++|..+|++..+... -+...|..++..+.+.|+.++|..+|++..+..
T Consensus       181 --------------------------~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          181 --------------------------CSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             --------------------------TSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             --------------------------HcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence                                      13455555555554444311 133444444445555555555555555555431


Q ss_pred             -CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105          358 -HSP--TVFTYNILINGLCKYGLVDRAINSFNQMVSK  391 (577)
Q Consensus       358 -~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  391 (577)
                       .+|  ....|..++....+.|+.+.|..+++++.+.
T Consensus       234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             122  2344555555555555555555555555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.45  E-value=2.9e-12  Score=123.92  Aligned_cols=274  Identities=14%  Similarity=0.054  Sum_probs=155.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          262 ILIEQVCKQCGIARAIEVLDDMAIEGCSPD----IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSL  337 (577)
Q Consensus       262 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  337 (577)
                      .....+...|++++|...|+++..... .+    ...+..+...+...|++++|...+++..+..               
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------   73 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA---------------   73 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---------------
Confidence            344455566666666666666655421 12    2344555555556666666665555543210               


Q ss_pred             HccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcC
Q 008105          338 GSRGCWDAVDKILDIMNEASH-SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC-QPD----IVTYNTVLGALCKEG  411 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g  411 (577)
                                      ...+. +....++..+...|...|++++|...+++..+... .++    ..++..+...+...|
T Consensus        74 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~  137 (338)
T 3ro2_A           74 ----------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG  137 (338)
T ss_dssp             ----------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence                            00000 01123344444455555555555555544433200 011    224444555555555


Q ss_pred             C--------------------hhHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC
Q 008105          412 M--------------------LNEALQLLHLLNGS----S-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-SP  465 (577)
Q Consensus       412 ~--------------------~~~A~~~~~~~~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p  465 (577)
                      +                    +++|...+++....    + .+.....+..+...+...|++++|...+++..+... .+
T Consensus       138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  217 (338)
T 3ro2_A          138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG  217 (338)
T ss_dssp             HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence            5                    55555555443221    1 011234566777777888888888888887754210 01


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C
Q 008105          466 D----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMISS----R  532 (577)
Q Consensus       466 ~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~  532 (577)
                      +    ..++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...+++..+.    +
T Consensus       218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence            1    236777778888888888888888877542    1111 1456777888888899999999988887642    1


Q ss_pred             C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          533 Y-KPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       533 ~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      - .....++..+...+.+.|++++|...+++..+..
T Consensus       298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            1 1114467778888999999999999999888754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.44  E-value=2e-11  Score=120.94  Aligned_cols=162  Identities=11%  Similarity=-0.003  Sum_probs=83.9

Q ss_pred             HHHHHHhCCChHHHHHHHHHHHHCC--CC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHhhHH
Q 008105          228 ILRTMFDNGKFKQAIGFWKDQLRKG--CP--P-YLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SP-----DIVTYN  296 (577)
Q Consensus       228 li~~~~~~~~~~~A~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-----~~~~~~  296 (577)
                      ....+...|++++|++.|++..+.-  .+  + ...++..+...+...|++++|.+.+++...... .+     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            4445566677777777777765431  11  1 234556666666667777777766666554210 01     123555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHHHHH
Q 008105          297 SLVNFSCKQGKYDDAVLVINNLLSRGME-PN----SITYNTLLHSLGSRGCWDAVDKILDIMNEA----SH-SPTVFTYN  366 (577)
Q Consensus       297 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~  366 (577)
                      .+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            6666666666666666666665432100 01    124444555555555555555555554431    11 22334455


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 008105          367 ILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       367 ~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                      .+...|.+.|++++|...+++..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.44  E-value=2e-11  Score=120.86  Aligned_cols=231  Identities=7%  Similarity=-0.066  Sum_probs=158.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 008105          333 LLHSLGSRGCWDAVDKILDIMNEA----SHSP-TVFTYNILINGLCKYGLVDRAINSFNQMVSKN--C----QPDIVTYN  401 (577)
Q Consensus       333 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~  401 (577)
                      ....+...|++++|...++...+.    +.++ ...++..+...|...|++++|+..+++..+..  .    +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            334456667777777777776543    1111 23466777777777788888877777766431  0    11234667


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 008105          402 TVLGALCKEGMLNEALQLLHLLNGS----SC-SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN----GI-SPDDITHR  471 (577)
Q Consensus       402 ~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~  471 (577)
                      .+...|...|++++|...+++..+.    +. .....++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7777788888888888888766542    10 111246778888899999999999999888761    22 33466788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhC----CCCccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 008105          472 TLIWGFCRADQVEEAVDLLKEIGKR----GNKMRNSAYRLVIHGLCKSKK---VDMAIQVLELMISSRYKPD-DTVFSTI  543 (577)
Q Consensus       472 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l  543 (577)
                      .+...|.+.|++++|.+.+++..+.    +-+.....+..+...+...|+   +++|..++++.   +..|+ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            8889999999999999999887652    112223335667778888888   77777777766   33333 4567778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 008105          544 VKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       544 ~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      ...|...|++++|.+.+++..+.
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            88999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.43  E-value=4.1e-11  Score=105.07  Aligned_cols=167  Identities=15%  Similarity=0.062  Sum_probs=127.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +..+|..+...+.+.|++++|++.|++.++.. +-+...|..+...|.+.|++++|...+++..... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            56677888888888888888888888888775 4467778888888888888888888888877654 446667777777


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD  310 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  310 (577)
                      .+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7788888888888888777653 5567777777778888888888888888877764 3356677777788888888888


Q ss_pred             HHHHHHHHhhC
Q 008105          311 AVLVINNLLSR  321 (577)
Q Consensus       311 A~~~~~~m~~~  321 (577)
                      |++.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888877765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=2.4e-11  Score=123.61  Aligned_cols=209  Identities=8%  Similarity=-0.065  Sum_probs=103.8

Q ss_pred             hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008105          133 LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI-EKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLD  211 (577)
Q Consensus       133 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  211 (577)
                      ++++++.+++.... .+.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34444455544433 223455555555555555666 66666665555543 2345555555555556666666666665


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008105          212 EMSVSGCEPDVITYNTILRTMFDN---------GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ--------CGIA  274 (577)
Q Consensus       212 ~~~~~g~~~~~~~~~~li~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  274 (577)
                      +..+.  .|+...+..+...+...         |++++|++.|++.++.. +.+...|..+...|...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            55544  34455555555555555         55555555555555442 33445555555555554        5555


Q ss_pred             HHHHHHHHHHHcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 008105          275 RAIEVLDDMAIEGCS--PDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVD  347 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~  347 (577)
                      +|.+.|++..+....  .+...|..+...|...|++++|.+.|++..+... -+...+..+..++...|++++|.
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555443200  2344444555555555555555555555444321 12233444444444444444443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=4.6e-12  Score=121.22  Aligned_cols=202  Identities=16%  Similarity=0.033  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC------C-CC
Q 008105          364 TYNILINGLCKYGLVDRAINSFNQMVSK------N-CQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGS------S-CS  429 (577)
Q Consensus       364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~  429 (577)
                      .+..+...|...|++++|...+++....      + .+....++..+...+...|++++|...++++.+.      + .+
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP  150 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            3344444444444444444444444332      0 1112334444445555555555555555444332      1 11


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------GISP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKR------  496 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  496 (577)
                      .....+..+...+...|++++|.+.++++.+.      +..| ...++..+...|...|++++|.+.++++.+.      
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            22344556666666667777777766666542      1112 2345666667777777777777777766542      


Q ss_pred             -CCCcc-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          497 -GNKMR-------NSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       497 -~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                       ...+.       ...+..+...+...+.+.+|...++..... .+.+..++..+..+|.+.|++++|.+++++.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             C------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             11111       112223333344556666666677766542 1234567788888999999999999999888774

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=3.4e-11  Score=115.13  Aligned_cols=242  Identities=12%  Similarity=0.048  Sum_probs=173.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARR-------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS-----  181 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----  181 (577)
                      +.+..++..+...|...|++++|..+|+++.+.       ..+....++..+...+...|++++|.+.+++..+.     
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  103 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL  103 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            445688999999999999999999999999873       23345667888999999999999999999998764     


Q ss_pred             -CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-
Q 008105          182 -GG-VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS------GC-EPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK-  251 (577)
Q Consensus       182 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-  251 (577)
                       +. +.....+..+...|...|++++|.+.|++..+.      +- +.....+..+...+...|++++|++.+++.... 
T Consensus       104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  183 (311)
T 3nf1_A          104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY  183 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence             21 234567888999999999999999999988754      21 224567888899999999999999999998764 


Q ss_pred             -----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCHh-------hHHHHHHHHHhcCCHHHH
Q 008105          252 -----G-CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE-------GCSPDIV-------TYNSLVNFSCKQGKYDDA  311 (577)
Q Consensus       252 -----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~-------~~~~li~~~~~~g~~~~A  311 (577)
                           + .+....++..+...+...|++++|.+.++++...       ...+...       .+..+...+...+.+.++
T Consensus       184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  263 (311)
T 3nf1_A          184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY  263 (311)
T ss_dssp             HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence                 2 1223457888899999999999999999998763       1112111       122223334444555566


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105          312 VLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEA  356 (577)
Q Consensus       312 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  356 (577)
                      ...++...... ..+..++..+..+|.+.|++++|.+.+++..+.
T Consensus       264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            66666665432 224567888999999999999999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=3.8e-11  Score=122.15  Aligned_cols=211  Identities=9%  Similarity=-0.035  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKF-KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                      +++...+++..... +.+...+..+...+...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|++
T Consensus        85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444443322 23455555555555555555 55555555555442 33455555555555555555555555555


Q ss_pred             HHHcCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc--------CCHHH
Q 008105          283 MAIEGCSPDIVTYNSLVNFSCKQ---------GKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR--------GCWDA  345 (577)
Q Consensus       283 ~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------g~~~~  345 (577)
                      ....  .|+...+..+...+...         |++++|+..+++..+.. +.+...|..+..+|...        |++++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            5544  24445555555555555         55555555555555442 11344555555555554        55555


Q ss_pred             HHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 008105          346 VDKILDIMNEASHS--PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLL  420 (577)
Q Consensus       346 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  420 (577)
                      |...|+...+....  .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+...|++++|...+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555555543210  245555555556666666666666666555543 334445555555555555555555433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.34  E-value=9.3e-10  Score=108.38  Aligned_cols=300  Identities=11%  Similarity=0.006  Sum_probs=196.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCH----HHHH
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIEGCSPDIV----TYNSLVNFSCKQGKYDDAVLVINNLLSRGME-PNS----ITYN  331 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~  331 (577)
                      ......+...|++++|...+++........+..    .++.+...+...|++++|...+++....... .+.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344456677899999999999887754222222    4566677788889999999998887653111 122    2345


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHH
Q 008105          332 TLLHSLGSRGCWDAVDKILDIMNEA----SHS--P-TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQ--P--DIVTY  400 (577)
Q Consensus       332 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~--~~~~~  400 (577)
                      .+...+...|++++|...+++..+.    +.+  | ....+..+...+...|++++|...+++.......  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6667788889999999888877643    221  2 2345666778888889999999998887764211  1  23456


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 008105          401 NTVLGALCKEGMLNEALQLLHLLNGSSCSPC-LITYN-----TLIDGLAKKGCMEKAMVLYGQMMENGISP---DDITHR  471 (577)
Q Consensus       401 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~  471 (577)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++..+....+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7777788888999999988887754311111 11121     23344678889999988888876533211   123456


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhh----CCCCccH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          472 TLIWGFCRADQVEEAVDLLKEIGK----RGNKMRN-SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKK  546 (577)
Q Consensus       472 ~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  546 (577)
                      .+...+...|++++|.+.+++...    .+..++. ..+..+..++...|+.++|...+++.....  +.    ...+..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~  331 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISH  331 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHH
Confidence            777888888999999888887754    2222222 256666777888889999998888887531  10    112344


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCC
Q 008105          547 VADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       547 ~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      +...|  +....+++.+....+
T Consensus       332 ~~~~g--~~~~~ll~~~~~~~~  351 (373)
T 1hz4_A          332 FVIEG--EAMAQQLRQLIQLNT  351 (373)
T ss_dssp             HHTTH--HHHHHHHHHHHHTTC
T ss_pred             HHHcc--HHHHHHHHHHHhCCC
Confidence            55555  667777777776554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.33  E-value=8.1e-10  Score=108.81  Aligned_cols=234  Identities=11%  Similarity=0.022  Sum_probs=131.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFH----FCINLIRGLIRIDRIEKASKVLQIMVMSGG-VPD----TITY  190 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~  190 (577)
                      .......+...|++++|...+++........+..    +++.+...+...|++++|.+.+++...... ..+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3444566777888999999888887764322222    455566677778888888888887765311 111    1234


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHHH
Q 008105          191 NMMVGGLCKRGQIRSAIALLDEMSVS----GCE--P-DVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP----PYLIT  259 (577)
Q Consensus       191 ~~li~~~~~~g~~~~A~~~~~~~~~~----g~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~  259 (577)
                      ..+...+...|++++|.+.+++..+.    +..  | ....+..+...+...|++++|...+++.......    ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            55666777788888888777776532    211  2 2334555666777777777777777776653211    12234


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-hhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHH
Q 008105          260 YTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI-VTYN-----SLVNFSCKQGKYDDAVLVINNLLSRGMEPN---SITY  330 (577)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~  330 (577)
                      +..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...+++.......+.   ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            555666666677777777777666542111110 1111     122335566666666666666554321111   1123


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHH
Q 008105          331 NTLLHSLGSRGCWDAVDKILDIM  353 (577)
Q Consensus       331 ~~ll~~~~~~g~~~~a~~~~~~~  353 (577)
                      ..+...+...|++++|...++..
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a  279 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEEL  279 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            34444455555555555555444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=2.4e-10  Score=99.79  Aligned_cols=170  Identities=17%  Similarity=0.143  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          398 VTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGF  477 (577)
Q Consensus       398 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  477 (577)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345555666666777777777777666543 3456667777777777777777777777776642 33566777777777


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008105          478 CRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       478 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  557 (577)
                      ...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            77888888888887776653 2356677777778888888888888888877643 345677778888888888888888


Q ss_pred             HHHHHHHHcCCCCC
Q 008105          558 KLWQKLIEWKVFEK  571 (577)
Q Consensus       558 ~~~~~~~~~~~~~~  571 (577)
                      +.++++.+..+...
T Consensus       165 ~~~~~~~~~~~~~~  178 (186)
T 3as5_A          165 PHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCch
Confidence            88888877655443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=5.4e-10  Score=110.30  Aligned_cols=226  Identities=9%  Similarity=0.029  Sum_probs=144.1

Q ss_pred             HHHccCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC----CCHHHHHHHH
Q 008105          336 SLGSRGCWDAVDKILDIMNEASH-SP----TVFTYNILINGLCKYGLVDRAINSFNQMVSKN--CQ----PDIVTYNTVL  404 (577)
Q Consensus       336 ~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~~~li  404 (577)
                      .+...|++++|...+++..+... .+    ...++..+...|...|+++.|+..+++..+..  ..    ....+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34556666777666666654311 01    23456666667777777777777776665421  00    1134566667


Q ss_pred             HHHHhcCChhHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 008105          405 GALCKEGMLNEALQLLHLLNGS----SCS-PCLITYNTLIDGLAKKGCMEKAMVLYGQMME-----NGISPDDITHRTLI  474 (577)
Q Consensus       405 ~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li  474 (577)
                      ..|...|++++|...+++..+.    +.. ....++..+...|...|++++|.+.|++..+     .. +....++..+.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la  268 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence            7777777777777777665442    111 1234567777888888888888888888765     32 22356777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCC----CCccHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 008105          475 WGFCRADQVEEAVDLLKEIGKRG----NKMRNSAYRLVIHGLCKSKK---VDMAIQVLELMISSRYKPD-DTVFSTIVKK  546 (577)
Q Consensus       475 ~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~  546 (577)
                      ..+.+.|++++|.+.+++..+..    .+.....+..+...+...|+   +++|+..+++.   +..|+ ...+..+...
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence            88888888888888888876521    12223345555566666777   77777777663   32333 3456678888


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 008105          547 VADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       547 ~~~~g~~~~A~~~~~~~~~  565 (577)
                      |...|++++|...+++..+
T Consensus       346 y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            8888999988888888765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=3.1e-10  Score=99.12  Aligned_cols=164  Identities=10%  Similarity=0.067  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            456667777777777777777777776653 2356666777777777777777777777776654 34566666677777


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      ...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777766543 3456666666666667777777777776666543 345556666666666666666666


Q ss_pred             HHHHHHHH
Q 008105          278 EVLDDMAI  285 (577)
Q Consensus       278 ~~~~~~~~  285 (577)
                      +.++++..
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.30  E-value=1.4e-10  Score=122.87  Aligned_cols=166  Identities=13%  Similarity=0.090  Sum_probs=149.8

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +..+++.|...|.+.|++++|++.|++.++... -+..+++.+...|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            468899999999999999999999999999753 378899999999999999999999999999875 446889999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      +|.+.|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++.++.. +-+...+..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999998764 4578899999999999999999999999999874 5578899999999999999999


Q ss_pred             HHHHHHHHHH
Q 008105          276 AIEVLDDMAI  285 (577)
Q Consensus       276 A~~~~~~~~~  285 (577)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.30  E-value=8.6e-10  Score=108.86  Aligned_cols=229  Identities=8%  Similarity=-0.037  Sum_probs=155.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC----C-C-CCHHHHH
Q 008105          298 LVNFSCKQGKYDDAVLVINNLLSRGM-EPN----SITYNTLLHSLGSRGCWDAVDKILDIMNEAS----H-S-PTVFTYN  366 (577)
Q Consensus       298 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~-~~~~~~~  366 (577)
                      ....+...|++++|...+++..+... .++    ..++..+...|...|+++.|...+++..+..    . . ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34456677888888888777765411 122    2356667777778888888887777665421    0 1 1244677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHHHH
Q 008105          367 ILINGLCKYGLVDRAINSFNQMVSK----NCQ-PDIVTYNTVLGALCKEGMLNEALQLLHLLNG-----SSCSPCLITYN  436 (577)
Q Consensus       367 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~  436 (577)
                      .+...|...|++++|.+.|++..+.    +.. ....++..+...|...|++++|...+++...     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            7888888888888888888877653    101 1234667778888888898888888887766     43 33366788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCc-cHHHHHHH
Q 008105          437 TLIDGLAKKGCMEKAMVLYGQMMENGI---SPD-DITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKM-RNSAYRLV  508 (577)
Q Consensus       437 ~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~-~~~~~~~l  508 (577)
                      .+...|.+.|++++|...+++..+..-   .|. ...+..+...+...|+   +++|..++++..   ..| ....+..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l  342 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHH
Confidence            888889999999999999998876311   122 3345556666667777   777777776632   222 23456678


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ...|...|++++|.+.+++..+
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8889999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=8.8e-10  Score=100.21  Aligned_cols=201  Identities=13%  Similarity=0.018  Sum_probs=157.0

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .|+..+......+.+.|++++|+..|++.++...+++...+..+..++.+.|++++|++.|++..+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            46788999999999999999999999999998765788888889999999999999999999999875 34677899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDV-------ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP--YLITYTILIE  265 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~  265 (577)
                      ..|...|++++|.+.|++..+.. +.+.       ..|..+...+...|++++|++.|++.++.. +.  +...+..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            99999999999999999998763 3345       557888888999999999999999998752 33  3567777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 008105          266 QVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI  328 (577)
Q Consensus       266 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  328 (577)
                      .+...|     ...++++...+ ..+...|....  ....+.+++|+..+++..+.  .|+..
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~  214 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT  214 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence            776544     33445555443 22344444333  33456689999999999887  44443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.23  E-value=5.4e-10  Score=118.42  Aligned_cols=166  Identities=13%  Similarity=0.046  Sum_probs=149.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +..+++.+...|.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            57789999999999999999999999999875 4468899999999999999999999999998774 456889999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD  310 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  310 (577)
                      +|.+.|++++|++.|++.++.. +-+...|+.+...+.+.|++++|.+.|++..+.. +-+...|..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            9999999999999999998864 5578899999999999999999999999999874 3357889999999999999999


Q ss_pred             HHHHHHHHhh
Q 008105          311 AVLVINNLLS  320 (577)
Q Consensus       311 A~~~~~~m~~  320 (577)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.21  E-value=2.3e-09  Score=97.44  Aligned_cols=206  Identities=12%  Similarity=-0.029  Sum_probs=159.4

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      .|+..+......+.+.|++++|.+.|++.++...+++...+..+...+...|++++|.+.|++..+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35678888999999999999999999999998754788888889999999999999999999999874 44677899999


Q ss_pred             HHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHH
Q 008105          230 RTMFDNGKFKQAIGFWKDQLRKGCPPYL-------ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD---IVTYNSLV  299 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li  299 (577)
                      ..+...|++++|++.+++.++.. +.+.       ..|..+...+...|++++|.+.|++..+.  .|+   ...|..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            99999999999999999998863 4455       45778888899999999999999999876  444   46777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          300 NFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNIL  368 (577)
Q Consensus       300 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  368 (577)
                      ..|...|     ...++++...+ ..+...+....  ....+.+++|...++...+... .+..+...+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l  220 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence            7776544     34455555543 22344444433  2345678999999999988652 244444433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.17  E-value=1.6e-07  Score=95.30  Aligned_cols=379  Identities=7%  Similarity=-0.055  Sum_probs=199.9

Q ss_pred             cC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHH
Q 008105          130 RG-KLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ-IRSAI  207 (577)
Q Consensus       130 ~g-~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~  207 (577)
                      .| +++.|+.+|+.++..  -|.              |+++.+.++|++.+..  .|+...|...+....+.+. .+...
T Consensus         7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~   68 (493)
T 2uy1_A            7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY   68 (493)
T ss_dssp             -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred             cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence            45 366777777776654  122              6677777777777764  4577777777766665552 34556


Q ss_pred             HHHHHHhhC-CC-CCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 008105          208 ALLDEMSVS-GC-EPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPY--LITYTILIEQVCKQCGIARAIEV  279 (577)
Q Consensus       208 ~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~  279 (577)
                      .+|+..... |. ..+...|...+..+..    +++.+.+.++|++.+..  |+.  ...|..... +.+..+...+.++
T Consensus        69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~  145 (493)
T 2uy1_A           69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKI  145 (493)
T ss_dssp             HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence            666665542 32 2356666666665432    34566777777777753  221  111211111 1111111122222


Q ss_pred             HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHcc--CC-----HHHHHHHHHH
Q 008105          280 LDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSR--GC-----WDAVDKILDI  352 (577)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~  352 (577)
                      +.+..                     ..+..|..+++.+...-...+...|...+.--...  +-     .+.+..+|++
T Consensus       146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~  204 (493)
T 2uy1_A          146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY  204 (493)
T ss_dssp             HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence            21111                     11222222222222100001222343333322111  00     2345566776


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHHhhC-----
Q 008105          353 MNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQ-LLHLLNGS-----  426 (577)
Q Consensus       353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~~~-----  426 (577)
                      +.... +.+...|...+..+.+.|+.+.|..+|++....  +.+...+.    .|....+.++... +.+.....     
T Consensus       205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~  277 (493)
T 2uy1_A          205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESA  277 (493)
T ss_dssp             HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC-------
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchh
Confidence            66543 345666777777777777777888887777766  33332222    1222111112111 11111000     


Q ss_pred             C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCccH
Q 008105          427 S---CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRA-DQVEEAVDLLKEIGKRGNKMRN  502 (577)
Q Consensus       427 ~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~  502 (577)
                      +   .......|...+....+.++.+.|..+|++. +.. ..+...|...+..-... ++.+.|..+|+...+... -+.
T Consensus       278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~  354 (493)
T 2uy1_A          278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DST  354 (493)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCH
T ss_pred             hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCH
Confidence            0   0111245666677666778899999999988 321 22444444333222222 368999999998877432 234


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          503 SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      ..+...++...+.|+.+.|..+|+++.     .....|...+.--...|+.+.+.+++++..+
T Consensus       355 ~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          355 LLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            456667777788899999999999872     2577788888877888999999888888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.16  E-value=5.1e-10  Score=105.13  Aligned_cols=228  Identities=13%  Similarity=0.000  Sum_probs=157.9

Q ss_pred             HhcCChhhHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008105          128 CSRGKLTDASKLIDIMARR-------NQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS------GG-VPDTITYNMM  193 (577)
Q Consensus       128 ~~~g~~~~A~~l~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~l  193 (577)
                      ...|++++|+.+|++..+.       ..+....++..+...+...|++++|.+.++++.+.      +- +....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456777777777766652       22335667888999999999999999999998765      21 2345678889


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC------C-CCCCHHH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVS------G-CEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK------G-CPPYLIT  259 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~------g-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~  259 (577)
                      ...|...|++++|.+.|++....      . .+....++..+...+...|++++|.+.+++..+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999988754      1 1234677888999999999999999999998765      1 1223567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCCH-hhHHHHHHHHHhcCCHH------HHHHHHHHHhhCCCCC
Q 008105          260 YTILIEQVCKQCGIARAIEVLDDMAIE-------GCSPDI-VTYNSLVNFSCKQGKYD------DAVLVINNLLSRGMEP  325 (577)
Q Consensus       260 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p  325 (577)
                      +..+...+.+.|++++|.+.++++...       ...+.. ..|..+...+...+...      .+...++..... ...
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            888899999999999999999988763       112222 33333333333333322      222222221111 112


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008105          326 NSITYNTLLHSLGSRGCWDAVDKILDIMNEA  356 (577)
Q Consensus       326 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  356 (577)
                      ...++..+...|...|++++|...+++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2447788889999999999999999988753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=4.6e-10  Score=105.40  Aligned_cols=228  Identities=15%  Similarity=0.026  Sum_probs=159.6

Q ss_pred             HccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 008105          338 GSRGCWDAVDKILDIMNEA-------SHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK------N-CQPDIVTYNTV  403 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~l  403 (577)
                      ...|++++|...+++..+.       ..+....++..+...|...|++++|+..++++.+.      + .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777666542       22345677889999999999999999999998764      1 12345678889


Q ss_pred             HHHHHhcCChhHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 008105          404 LGALCKEGMLNEALQLLHLLNGS------S-CSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN------GISP-DDIT  469 (577)
Q Consensus       404 i~~~~~~g~~~~A~~~~~~~~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~  469 (577)
                      ...+...|++++|...+++....      . .+....++..+...|...|++++|...+++..+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999987754      1 1334567888999999999999999999999764      1123 3567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCc-cHHHHHHHHHHHHhcCChHHHHH------HHHHHHHCCCCC
Q 008105          470 HRTLIWGFCRADQVEEAVDLLKEIGKR-------GNKM-RNSAYRLVIHGLCKSKKVDMAIQ------VLELMISSRYKP  535 (577)
Q Consensus       470 ~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~~A~~------~~~~m~~~~~~p  535 (577)
                      +..+...|...|++++|.+++++..+.       ...+ ....|..+.......+....+..      .++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888999999999999999999998753       1122 22334444444443333333222      2222110 1112


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          536 DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       536 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      ...++..+...+...|++++|.+++++.++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2456788999999999999999999998763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.12  E-value=3.4e-08  Score=91.85  Aligned_cols=244  Identities=11%  Similarity=0.040  Sum_probs=122.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      |+...-.|.+..++.-.   .+.........-..+.+++...|+++..         ....|....+..+.. |...+  
T Consensus        20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred             HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence            45555667777776632   2221122222333345677777766531         111233323333332 22211  


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGC-PPYLITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                        |...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus        85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence              556666655544 34555555666666666777777776666654432 12445555666666666666666666666


Q ss_pred             HHHcCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 008105          283 MAIEGCSP-----DIVTYNSLVNF--SCKQG--KYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIM  353 (577)
Q Consensus       283 ~~~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  353 (577)
                      |.+.  .|     +..+...|+.+  ....|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|++.++.+
T Consensus       162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6554  33     13333334433  22222  666666666666544  333223333344556666666666666654


Q ss_pred             HhCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105          354 NEAS---------HSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK  391 (577)
Q Consensus       354 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  391 (577)
                      .+..         -+.++.+...+|......|+  +|.++++++.+.
T Consensus       238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            4320         02344444344444444454  555666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=1.2e-07  Score=88.30  Aligned_cols=144  Identities=10%  Similarity=-0.024  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLL  319 (577)
Q Consensus       241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  319 (577)
                      |+..|++....+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555544433 33444444555555555666666666655544331 1133444455555555555555555555555


Q ss_pred             hCCCCC-----CHHHHHHHHHHH--Hc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105          320 SRGMEP-----NSITYNTLLHSL--GS--RGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       320 ~~g~~p-----~~~~~~~ll~~~--~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                      +.  .|     +..+...+..++  ..  .++..+|..+|+++.+..  |+..+-..++.++.+.|++++|.+.++.+.
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            43  33     133333333331  11  225555555555554432  222222233334555555555555555433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.06  E-value=1e-08  Score=83.87  Aligned_cols=129  Identities=11%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45566667777777777777777766653 2355566666666666677777777776666554 334555666666666


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      ..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            6666666666666665543 33455556666666666666666666666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.05  E-value=4.3e-07  Score=92.20  Aligned_cols=97  Identities=7%  Similarity=-0.002  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR-IEKASKVLQIMVMS-GG-VPDTITYNMM  193 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-g~-~~~~~~~~~l  193 (577)
                      ..+|...+..+-. |+++.+..+|++.+..  .|+...|...+....+.+. .+....+|+..+.. |. ..+...|...
T Consensus        15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            4567777777766 8999999999999985  5799999999988887764 45677888887764 43 3467888888


Q ss_pred             HHHHH----hcCChHHHHHHHHHHhhC
Q 008105          194 VGGLC----KRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       194 i~~~~----~~g~~~~A~~~~~~~~~~  216 (577)
                      +..+.    ..|+.+.+.++|++....
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~  118 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQT  118 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence            87654    346788999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.05  E-value=1.7e-08  Score=82.60  Aligned_cols=132  Identities=15%  Similarity=0.182  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 008105          434 TYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLC  513 (577)
Q Consensus       434 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~  513 (577)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.++++++...+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45566677777778888888877776643 2356667777777777888888888888777654 234566777777888


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          514 KSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       514 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            8888888888888877632 33567777788888888888888888888877554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.04  E-value=5.2e-09  Score=99.07  Aligned_cols=207  Identities=14%  Similarity=-0.030  Sum_probs=130.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHH
Q 008105          342 CWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK----NCQPD-IVTYNTVLGALCKEGMLNEA  416 (577)
Q Consensus       342 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A  416 (577)
                      ++++|...+...               ...|...|++++|...|.+..+.    +-+++ ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666554               33566677777777777766543    21111 45677777777777788777


Q ss_pred             HHHHHHHhhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 008105          417 LQLLHLLNGSSC---SP--CLITYNTLIDGLAKK-GCMEKAMVLYGQMMENGI-SPD----DITHRTLIWGFCRADQVEE  485 (577)
Q Consensus       417 ~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~  485 (577)
                      ...+++..+...   .+  -..+++.+...|... |++++|...|++..+... ..+    ..++..+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            777766544210   11  134677777888885 888888888888765210 001    3457777888888888888


Q ss_pred             HHHHHHHHhhCCCCccH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcC
Q 008105          486 AVDLLKEIGKRGNKMRN------SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD------TVFSTIVKKVA--DDG  551 (577)
Q Consensus       486 A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~--~~g  551 (577)
                      |.+.|++..+.......      ..|..+..++...|++++|...+++.++  +.|+.      ..+..++.++.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            88888888774332221      1456677778888888888888888774  33432      12344555554  456


Q ss_pred             CHHHHHHHHHHHHH
Q 008105          552 MTEEAYKLWQKLIE  565 (577)
Q Consensus       552 ~~~~A~~~~~~~~~  565 (577)
                      ++++|.+.++++.+
T Consensus       255 ~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          255 QLSEHCKEFDNFMR  268 (292)
T ss_dssp             THHHHHHHHTTSSC
T ss_pred             HHHHHHHHhccCCc
Confidence            67777777766554

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=1.5e-08  Score=95.83  Aligned_cols=193  Identities=9%  Similarity=-0.028  Sum_probs=111.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHH
Q 008105          161 GLIRIDRIEKASKVLQIMVMS----GGVPD-TITYNMMVGGLCKRGQIRSAIALLDEMSVS----GCEP-DVITYNTILR  230 (577)
Q Consensus       161 ~~~~~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~  230 (577)
                      .|...|++++|.+.|++..+.    |-+++ ..+|+.+..+|.+.|++++|...|++..+.    |-.. -..+++.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345556666666666555442    21111 345666666666666666666666665432    1000 1345666777


Q ss_pred             HHHhC-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------hhHHHH
Q 008105          231 TMFDN-GKFKQAIGFWKDQLRKGCP-PY----LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI------VTYNSL  298 (577)
Q Consensus       231 ~~~~~-~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l  298 (577)
                      .|... |++++|+..|++.++.... .+    ..++..+...+.+.|++++|...|++..........      ..|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            77775 7777777777776653110 01    345667777777788888888888777765322211      145666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHH--ccCCHHHHHHHHHHHHh
Q 008105          299 VNFSCKQGKYDDAVLVINNLLSRGMEPNS------ITYNTLLHSLG--SRGCWDAVDKILDIMNE  355 (577)
Q Consensus       299 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~  355 (577)
                      ..++...|++++|...+++..+.  .|+.      ..+..++..+.  ..+++++|...|+.+..
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            67777788888888888777654  2221      12344455554  34567777777766544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.99  E-value=2e-08  Score=93.30  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD---FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-P-DTIT  189 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~  189 (577)
                      .++..+-.+...+.+.|++++|+..|+++++..+. +   ..++..+..++.+.|++++|+..|+..++..+. | ....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45677888889999999999999999999887432 3   567888889999999999999999999886431 2 2456


Q ss_pred             HHHHHHHHHh--------cCChHHHHHHHHHHhhC
Q 008105          190 YNMMVGGLCK--------RGQIRSAIALLDEMSVS  216 (577)
Q Consensus       190 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~  216 (577)
                      +..+..++..        .|++++|...|+++.+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            6777788888        89999999999988865

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=2.9e-08  Score=88.66  Aligned_cols=125  Identities=10%  Similarity=0.014  Sum_probs=60.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  272 (577)
                      +...|.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++.++.. |.+..++..+...|...|.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            5555555566666666665555443 3345555555555555666666666666555542 3345555555555443332


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          273 --IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       273 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                        .+.+...++....  ..|....+.....++...|++++|...|++..+.
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence              2233333333321  1122222333334444555666666666665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.99  E-value=2.3e-08  Score=89.35  Aligned_cols=176  Identities=9%  Similarity=-0.037  Sum_probs=134.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCIN----------------LIRGLIRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~  180 (577)
                      +..+-.....+.+.|++++|+..|++.++..+ .+...|..                +...+.+.|++++|+..|++.++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34445566788899999999999999998742 25566666                88999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 008105          181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK--FKQAIGFWKDQLRKGCPPYLI  258 (577)
Q Consensus       181 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~  258 (577)
                      .. +.+...|..+...|...|++++|...|++..+.. +.+..+|..+...|...|+  .+.+...++....  ..|...
T Consensus        83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  158 (208)
T 3urz_A           83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY  158 (208)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred             HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence            86 4578899999999999999999999999998875 5578889989888866554  4455566655532  223333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 008105          259 TYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLV  299 (577)
Q Consensus       259 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li  299 (577)
                      .+..+..++...|++++|...|++..+.  .|+......+.
T Consensus       159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~  197 (208)
T 3urz_A          159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            4444556677789999999999999876  57765444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=7.9e-08  Score=86.06  Aligned_cols=177  Identities=14%  Similarity=0.016  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHH
Q 008105          134 TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG----QIRSAIAL  209 (577)
Q Consensus       134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~  209 (577)
                      .+|++.|++..+.|   +..++..+...|...+++++|.++|++..+.|   ++..+..|...|.. +    ++++|.+.
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35667777777654   66777777777777788888888888777765   55666667776666 5    77777777


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 008105          210 LDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCK----QCGIARAIEVL  280 (577)
Q Consensus       210 ~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~  280 (577)
                      |++..+.|   +...+..|...|..    .+++++|++.|++..+.+.. .+..++..|...|..    .++.++|...|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            77776643   56666677777766    67777777777777665411 115666666666666    66677777777


Q ss_pred             HHHHHcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHhhCC
Q 008105          281 DDMAIEGCSPDIVTYNSLVNFSCKQ-G-----KYDDAVLVINNLLSRG  322 (577)
Q Consensus       281 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g  322 (577)
                      ++....  ..+...+..|...|... |     +.++|..+|++..+.|
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            777665  12344555566665543 2     6777777777666654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=1.1e-07  Score=85.17  Aligned_cols=140  Identities=12%  Similarity=-0.019  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 008105          346 VDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEG----MLNEALQLLH  421 (577)
Q Consensus       346 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~  421 (577)
                      |.+.|+...+.|   ++..+..+...|...+++++|+..|++..+.|   ++..+..+...|.. +    ++++|...|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            344444444432   44444555555555555555555555555443   34444444444444 3    4555555555


Q ss_pred             HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 008105          422 LLNGSSCSPCLITYNTLIDGLAK----KGCMEKAMVLYGQMMENGIS-PDDITHRTLIWGFCR----ADQVEEAVDLLKE  492 (577)
Q Consensus       422 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~  492 (577)
                      ...+.+   +...+..|...|..    .+++++|..+|++..+.|.. .+...+..|...|..    .+++++|.++|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            444433   33344444444443    44455555555544443210 013344444444444    4444444444444


Q ss_pred             Hhh
Q 008105          493 IGK  495 (577)
Q Consensus       493 m~~  495 (577)
                      ..+
T Consensus       155 A~~  157 (212)
T 3rjv_A          155 SSS  157 (212)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.96  E-value=4.8e-08  Score=90.72  Aligned_cols=189  Identities=11%  Similarity=0.020  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC--CCCHHH
Q 008105          360 PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPD---IVTYNTVLGALCKEGMLNEALQLLHLLNGSSC--SPCLIT  434 (577)
Q Consensus       360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~  434 (577)
                      .+...+-.+...+.+.|++++|+..|+++.+.. +.+   ...+..+..++.+.|++++|...|+...+...  +.....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            455666677777778888888888888887763 223   56677777778888888888888887776531  112345


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHH
Q 008105          435 YNTLIDGLAK--------KGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAY  505 (577)
Q Consensus       435 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~  505 (577)
                      +..+..++..        .|++++|...|+++++..  |+. .....+              ..+......    ....+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHH
Confidence            6666667777        777888888888777642  331 122111              000000000    00112


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCC
Q 008105          506 RLVIHGLCKSKKVDMAIQVLELMISSRY-KP-DDTVFSTIVKKVADD----------GMTEEAYKLWQKLIEWKVF  569 (577)
Q Consensus       506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~  569 (577)
                      ..+...|.+.|++++|+..|+++++... .| ....+..+..++...          |++++|...++++++..|.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence            3455556666666666666666654211 11 134455555555544          6666666666666665443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=1.2e-06  Score=82.37  Aligned_cols=227  Identities=8%  Similarity=0.037  Sum_probs=142.2

Q ss_pred             HHHHHhcCCh-hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 008105          124 LQNFCSRGKL-TDASKLIDIMARRNQIPDFHFCINLIRGLIRID--RIEKASKVLQIMVMSGGVPDTITYNMMVGGL---  197 (577)
Q Consensus       124 i~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~---  197 (577)
                      +.+..+.|.+ ++|+.+++.++..++. +..+|+.-...+...+  +++++++.++.++..+ +.+..+|+.--..+   
T Consensus        39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~  116 (306)
T 3dra_A           39 LLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence            3344445544 6899999999987533 6777888888888888  8999999999988876 34556666555544   


Q ss_pred             -Hhc---CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          198 -CKR---GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK--QAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       198 -~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                       ...   +++++++++++++.+.. +.+-.+|+.-.-.+.+.+.++  ++++.++++++.. +-|...|+.....+.+.+
T Consensus       117 ~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          117 MELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSG
T ss_pred             HHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence             444   67888888888887664 567777777777777777777  7778777777764 456666666555555555


Q ss_pred             C------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHhhCC--CCCCHHHHHHHHHHHHccCC
Q 008105          272 G------IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDD-AVLVINNLLSRG--MEPNSITYNTLLHSLGSRGC  342 (577)
Q Consensus       272 ~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~  342 (577)
                      .      ++++++.++++.... +-|...|+.+-..+.+.|+... +..+..++.+.+  -..+...+..+..+|.+.|+
T Consensus       195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~  273 (306)
T 3dra_A          195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK  273 (306)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred             ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence            4      566666666665553 3355566666555555555322 333444333221  01233444455555555555


Q ss_pred             HHHHHHHHHHHHh
Q 008105          343 WDAVDKILDIMNE  355 (577)
Q Consensus       343 ~~~a~~~~~~~~~  355 (577)
                      .++|.++++.+.+
T Consensus       274 ~~~A~~~~~~l~~  286 (306)
T 3dra_A          274 YNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.92  E-value=1.6e-08  Score=107.56  Aligned_cols=172  Identities=13%  Similarity=0.002  Sum_probs=113.9

Q ss_pred             HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          163 IRIDRIEKASKVLQIMV--------MSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       163 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      ...|++++|++.+++..        +.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            56677777777777776        332 3455667777777777777777777777776553 3456677777777777


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLV  314 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  314 (577)
                      .|++++|++.|++.++.. +.+...+..+...+.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777777777653 4456667777777777777777 77777777653 23556677777777777777777777


Q ss_pred             HHHHhhCCCCCC-HHHHHHHHHHHHccC
Q 008105          315 INNLLSRGMEPN-SITYNTLLHSLGSRG  341 (577)
Q Consensus       315 ~~~m~~~g~~p~-~~~~~~ll~~~~~~g  341 (577)
                      |++..+.  .|+ ...+..+..++...+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccC
Confidence            7777655  343 345555555554433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.89  E-value=7.7e-09  Score=86.97  Aligned_cols=144  Identities=6%  Similarity=-0.114  Sum_probs=80.9

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ...+...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            344555666677777666665432 1234445556666666677777777666666654 33566666666666666666


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGF-WKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      ++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++.++.. |-+..+|......+...|
T Consensus        82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            66666666666543 33455666666666666666554443 35554432 334455554444444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.89  E-value=3.1e-08  Score=85.76  Aligned_cols=161  Identities=9%  Similarity=0.027  Sum_probs=92.3

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG-LC  198 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~  198 (577)
                      +..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++...+..+  +...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            4455667777777777777777766653 23566677777777777777777777777665532  43333222211 11


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPP-YLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      ..+...+|.+.+++..+.. +.+...+..+...+...|++++|...|+++++....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2222334556666655442 2345666666666666666666666666665543211 2345555666666666666666


Q ss_pred             HHHHHHH
Q 008105          278 EVLDDMA  284 (577)
Q Consensus       278 ~~~~~~~  284 (577)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=1.8e-06  Score=81.07  Aligned_cols=218  Identities=9%  Similarity=0.038  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----HhC---CCh
Q 008105          168 IEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG--QIRSAIALLDEMSVSGCEPDVITYNTILRTM----FDN---GKF  238 (577)
Q Consensus       168 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----~~~---~~~  238 (577)
                      .++|+++++.++..+ +-+...|+.--..+...|  +++++++.++.+.... +.+..+|+.--..+    ...   +++
T Consensus        49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence            367888888888876 446667887777777777  8888998888888764 45666666655444    444   677


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC------HHH
Q 008105          239 KQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA--RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK------YDD  310 (577)
Q Consensus       239 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~  310 (577)
                      ++++++++++++.. +.|..+|+.-...+.+.|.++  ++++.++++.+.. +.|...|+.-...+.+.+.      +++
T Consensus       127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            88888888887763 557777777766677777776  7777777777764 2356666665555555554      666


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          311 AVLVINNLLSRGMEPNSITYNTLLHSLGSRGCW-DAVDKILDIMNEAS--HSPTVFTYNILINGLCKYGLVDRAINSFNQ  387 (577)
Q Consensus       311 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  387 (577)
                      +++.++++....+. |...|+.+-..+.+.|+. +.+..+...+.+.+  .+.+...+..+...|.+.|+.++|+++++.
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~  283 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL  283 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence            66666666655322 555666655555555553 22334444443321  123455566666666666666666666666


Q ss_pred             HHH
Q 008105          388 MVS  390 (577)
Q Consensus       388 m~~  390 (577)
                      +.+
T Consensus       284 l~~  286 (306)
T 3dra_A          284 LKS  286 (306)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.88  E-value=9.3e-08  Score=90.08  Aligned_cols=167  Identities=13%  Similarity=0.040  Sum_probs=122.0

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          149 IPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       149 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      +.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++...  .|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            3455666777778888888888888888888775 446777888888888888888888888887765  3554433332


Q ss_pred             H-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcC
Q 008105          229 L-RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQG  306 (577)
Q Consensus       229 i-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g  306 (577)
                      . ..+...++.++|++.+++..... |.+...+..+...+...|++++|.+.|.++.+..... +...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2 33556677777888888877663 5677788888888888888888888888887763221 2556777888888888


Q ss_pred             CHHHHHHHHHHHh
Q 008105          307 KYDDAVLVINNLL  319 (577)
Q Consensus       307 ~~~~A~~~~~~m~  319 (577)
                      +.++|...+++..
T Consensus       270 ~~~~a~~~~r~al  282 (287)
T 3qou_A          270 TGDALASXYRRQL  282 (287)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHH
Confidence            8888877776654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.88  E-value=4.5e-08  Score=104.10  Aligned_cols=173  Identities=12%  Similarity=-0.048  Sum_probs=92.0

Q ss_pred             HccCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008105          338 GSRGCWDAVDKILDIMN--------EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCK  409 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~  409 (577)
                      ...|++++|.+.+++..        +.. +.+...+..+...+.+.|++++|++.|+++.+.+ +.+...|..+..++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            44556666666666555        221 2344455555556666666666666666655543 3345555555556666


Q ss_pred             cCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          410 EGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDL  489 (577)
Q Consensus       410 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  489 (577)
                      .|++++|...|++..+.. +.+...|..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666555543 3344555556666666666666 66666655532 22345555566666666666666666


Q ss_pred             HHHHhhCCCCccHHHHHHHHHHHHhcC
Q 008105          490 LKEIGKRGNKMRNSAYRLVIHGLCKSK  516 (577)
Q Consensus       490 ~~~m~~~~~~~~~~~~~~li~~~~~~g  516 (577)
                      |++..+.+.. +...+..+..++...+
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence            6655543211 2334444444444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.88  E-value=2.6e-07  Score=83.50  Aligned_cols=185  Identities=11%  Similarity=0.032  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIP--DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT--ITYN  191 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~  191 (577)
                      ++..+..+...+.+.|++++|+..|+++++..+..  ....+..+..++.+.|++++|+..|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34566777888999999999999999999864321  1357788889999999999999999999887533211  2344


Q ss_pred             HHHHHHHh------------------cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105          192 MMVGGLCK------------------RGQIRSAIALLDEMSVSGCEPD-VITYNTILRTMFDNGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       192 ~li~~~~~------------------~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~  252 (577)
                      .+..++.+                  .|++++|...|+++.+..  |+ ...+......          ..+...+    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence            44444443                  345666666666665442  22 1111111100          0000000    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 008105          253 CPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSRG  322 (577)
Q Consensus       253 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  322 (577)
                          ......+...+.+.|++++|...|+++.+..  |+.    ..+..+..++.+.|+.++|.+.++.+...+
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                0111345677889999999999999998763  332    467788899999999999999999888774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.86  E-value=8e-08  Score=100.28  Aligned_cols=154  Identities=10%  Similarity=-0.022  Sum_probs=104.8

Q ss_pred             cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008105          130 RGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIAL  209 (577)
Q Consensus       130 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  209 (577)
                      .|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...|..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            367788888888877653 2356777788888888888888888888888765 34577788888888888888888888


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHc
Q 008105          210 LDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ---CGIARAIEVLDDMAIE  286 (577)
Q Consensus       210 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  286 (577)
                      |++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88877664 4467778888888888888888888888877763 45667777788888888   8888888888888776


Q ss_pred             C
Q 008105          287 G  287 (577)
Q Consensus       287 ~  287 (577)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=2.7e-07  Score=83.39  Aligned_cols=186  Identities=12%  Similarity=0.023  Sum_probs=125.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV----IT  224 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~  224 (577)
                      +...+..+...+.+.|++++|+..|+++++..+..  ....+..+..+|.+.|++++|.+.|+++.+..  |+.    ..
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a   80 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV   80 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence            34456667778889999999999999998864321  13567778899999999999999999988653  321    24


Q ss_pred             HHHHHHHHHh------------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          225 YNTILRTMFD------------------NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       225 ~~~li~~~~~------------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      +..+..++..                  .|++++|+..|+++++.. |-+...+.......          .+...+.  
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~--  147 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA--  147 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH--
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH--
Confidence            4444444443                  466777777777776542 22222222111100          0000110  


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008105          287 GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN--SITYNTLLHSLGSRGCWDAVDKILDIMNEAS  357 (577)
Q Consensus       287 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  357 (577)
                            .....+...|.+.|++++|+..|+++.+......  ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                  1123466789999999999999999998732211  2467888999999999999999999998875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.84  E-value=8.5e-08  Score=100.08  Aligned_cols=153  Identities=11%  Similarity=-0.052  Sum_probs=114.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008105          375 YGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVL  454 (577)
Q Consensus       375 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  454 (577)
                      .|++++|++.|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988764 4567888899999999999999999999988875 55678889999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc---CChHHHHHHHHHHHHC
Q 008105          455 YGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS---KKVDMAIQVLELMISS  531 (577)
Q Consensus       455 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~  531 (577)
                      +++..+.. +.+...+..+..+|...|++++|.+.+++..+... .+...+..+...+...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99998753 34577888999999999999999999999887643 3567788888899999   9999999999998864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.84  E-value=8.6e-08  Score=90.33  Aligned_cols=166  Identities=15%  Similarity=0.093  Sum_probs=137.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM-MV  194 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-li  194 (577)
                      +...+..+...+.+.|++++|...|+++++..+ .+...+..+...+.+.|++++|...++++....  |+...... ..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            456677888999999999999999999998753 378889999999999999999999999998764  45443333 33


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP-PYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~  273 (577)
                      ..+.+.++.++|.+.+++..+.. +.+...+..+...+...|++++|++.|.++++.... .+...+..++..+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            34667888899999999988764 567899999999999999999999999999987422 1267899999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008105          274 ARAIEVLDDMAI  285 (577)
Q Consensus       274 ~~A~~~~~~~~~  285 (577)
                      ++|...+++...
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999998887653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=5.3e-08  Score=84.33  Aligned_cols=161  Identities=13%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT-MF  233 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~  233 (577)
                      +......+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++.....  |+...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            4455566677777777777777766543 3356667777777777777777777777765542  343332222111 11


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSP-DIVTYNSLVNFSCKQGKYDDAV  312 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  312 (577)
                      ..+...+|+..+++.++.. |.+...+..+...+...|++++|.+.|+++.+....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            2122233555555555442 3345556666666666666666666666665543211 2335555566666666666666


Q ss_pred             HHHHHHh
Q 008105          313 LVINNLL  319 (577)
Q Consensus       313 ~~~~~m~  319 (577)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.82  E-value=2.3e-08  Score=84.03  Aligned_cols=142  Identities=11%  Similarity=-0.054  Sum_probs=81.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105          161 GLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ  240 (577)
Q Consensus       161 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  240 (577)
                      .+...|++++|++.++...... +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            3445566667776666665432 1123344556666777777777777777666553 3456666666667777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105          241 AIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEV-LDDMAIEGCSPDIVTYNSLVNFSCKQG  306 (577)
Q Consensus       241 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g  306 (577)
                      |+..|++.++.. |-+..++..+...+.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            777776666543 34556666666666666666554443 35555442 223445554444444444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.79  E-value=1.7e-07  Score=89.25  Aligned_cols=124  Identities=9%  Similarity=-0.036  Sum_probs=54.4

Q ss_pred             HHHHccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 008105          335 HSLGSRGCWDAVDKILDIMNEA----SHS-PTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC---QPD--IVTYNTVL  404 (577)
Q Consensus       335 ~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li  404 (577)
                      ..|...|++++|...+.+..+.    +.+ .-..+|+.+...|.+.|++++|+..|++..+...   .+.  ..++..+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455566666666666555432    100 0123455555555556666666666655443200   010  12334444


Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          405 GALCKEGMLNEALQLLHLLNGSSC---SP--CLITYNTLIDGLAKKGCMEKAMVLYGQMM  459 (577)
Q Consensus       405 ~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~  459 (577)
                      ..|.. |++++|...+++......   .+  ...++..+...|.+.|++++|...|++..
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444 555555555444332110   00  02234444444444444444444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.76  E-value=3.4e-07  Score=87.15  Aligned_cols=199  Identities=11%  Similarity=0.041  Sum_probs=104.3

Q ss_pred             hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008105          129 SRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR-IDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAI  207 (577)
Q Consensus       129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~  207 (577)
                      ..|++++|.+++++..+.... .          +.+ .++++.|...|...               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            356778888888877654211 1          011 34555555555443               23455556666666


Q ss_pred             HHHHHHhhC----CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008105          208 ALLDEMSVS----GCEP-DVITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCPP-YLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       208 ~~~~~~~~~----g~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      +.|.+..+.    |-.+ -..+|+.+...|...|++++|+..|++.++.    |-+. -..++..+...|.. |++++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            655554322    1000 1334555556666666666666666554432    1000 12345555555655 6666666


Q ss_pred             HHHHHHHHcCCC---C--CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 008105          278 EVLDDMAIEGCS---P--DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR----GMEPN-SITYNTLLHSLGSRGCWDAVD  347 (577)
Q Consensus       278 ~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~  347 (577)
                      +.|++.......   +  ...+++.+...|.+.|++++|+..|++..+.    +..+. ..++..+..++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            666655442100   0  1245666666677777777777766666542    11111 124455555566667777777


Q ss_pred             HHHHHHH
Q 008105          348 KILDIMN  354 (577)
Q Consensus       348 ~~~~~~~  354 (577)
                      ..|++..
T Consensus       216 ~~~~~al  222 (307)
T 2ifu_A          216 KCVRESY  222 (307)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            7777666

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.73  E-value=6.9e-06  Score=77.44  Aligned_cols=162  Identities=11%  Similarity=0.032  Sum_probs=100.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 008105          404 LGALCKEGMLNEALQLLHLLNGSSC-SPCL----ITYNTLIDGLAKKGCMEKAMVLYGQMMENGIS-PD----DITHRTL  473 (577)
Q Consensus       404 i~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l  473 (577)
                      +..+...|++++|..++++...... .|+.    ..+..+...+...+++++|...|++..+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556666777777777766655321 1221    12233555555666777777777777763211 22    2356777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhh----C-CCCcc-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHH
Q 008105          474 IWGFCRADQVEEAVDLLKEIGK----R-GNKMR-NSAYRLVIHGLCKSKKVDMAIQVLELMIS----SRYKPD-DTVFST  542 (577)
Q Consensus       474 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~  542 (577)
                      ...|...|++++|.+.++++.+    . +..+. ..++..+...|.+.|++++|.+.+++.++    .+..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            7777777777777777777663    1 11122 23567777778888888888888777664    222222 566777


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHH
Q 008105          543 IVKKVADDG-MTEEAYKLWQKLIE  565 (577)
Q Consensus       543 l~~~~~~~g-~~~~A~~~~~~~~~  565 (577)
                      +..++.+.| .+++|.+.+++.++
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            777888888 45888887777754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.70  E-value=8.7e-06  Score=76.74  Aligned_cols=208  Identities=13%  Similarity=0.008  Sum_probs=136.4

Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          314 VINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT---YNILINGLCKYGLVDRAINSFNQMVS  390 (577)
Q Consensus       314 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~  390 (577)
                      .+..+......|+..+...+...+.-.-  +       .+.......+...   +...+..+...|++++|...+++..+
T Consensus        33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~  103 (293)
T 3u3w_A           33 EVSRIESGAVYPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK  103 (293)
T ss_dssp             HHHHHHTTSCCCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            3444444444667666666665553221  1       1111111122222   23346677888999999999988876


Q ss_pred             CCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          391 KNC-QPDI----VTYNTVLGALCKEGMLNEALQLLHLLNGSSCS-PC----LITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       391 ~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      ... .|+.    ..+..+...+...+++++|...++.+...... ++    ..+++.+...|...|++++|...|+++.+
T Consensus       104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  183 (293)
T 3u3w_A          104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            421 2221    12334566666778999999999888763222 22    23688889999999999999999999874


Q ss_pred             ----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHhcCC-hHHHHHHHHHH
Q 008105          461 ----N-GISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RNSAYRLVIHGLCKSKK-VDMAIQVLELM  528 (577)
Q Consensus       461 ----~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~-~~~A~~~~~~m  528 (577)
                          . +..+. ..++..+...|.+.|++++|.+.+++..+.    +..+ -..+|..+..++.+.|+ +++|.+.+++.
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence                1 11222 336788889999999999999999887652    2222 25678888999999995 69999999887


Q ss_pred             HH
Q 008105          529 IS  530 (577)
Q Consensus       529 ~~  530 (577)
                      ..
T Consensus       264 l~  265 (293)
T 3u3w_A          264 SF  265 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.70  E-value=8.1e-07  Score=79.31  Aligned_cols=129  Identities=11%  Similarity=-0.026  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..+..+...+...|++++|...|++..    .|+..++..+...+.+.|++++|.+.|++..+.. +.+...|..+...|
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence            445677888889999999999998774    4578888889999999999999999999988775 45678888888999


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPD----------------VITYNTILRTMFDNGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~----------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~  252 (577)
                      ...|++++|.+.|++..+.. +.+                ...+..+..++...|++++|.+.|++..+..
T Consensus        82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            99999999999999888653 222                3677788888888889999988888887653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.69  E-value=1.5e-05  Score=75.65  Aligned_cols=184  Identities=10%  Similarity=0.049  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      +++.+-....+.+..++|+++++.++..++. +..+|+.--..+...| .+++++++++.++... +.+..+|+.-...+
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL  133 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL  133 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            3444444445555567899999999998644 7777888888888888 5999999999999876 45778888877777


Q ss_pred             Hhc-C-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          198 CKR-G-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFK--------QAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       198 ~~~-g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      .+. + ++++++++++++.+.. +.|-.+|+.-.-.+.+.+.++        ++++.++++++.. +-|..+|+.....+
T Consensus       134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL  211 (349)
T 3q7a_A          134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            776 7 8899999999998765 567788877665555555555        7888888887764 55777777777666


Q ss_pred             HHcCC-------HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105          268 CKQCG-------IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK  307 (577)
Q Consensus       268 ~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  307 (577)
                      .+.++       ++++++.++++.... +-|...|+-+-..+.+.|+
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            66665       567777777776653 3366667666655555554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.66  E-value=7.1e-07  Score=81.87  Aligned_cols=125  Identities=8%  Similarity=-0.084  Sum_probs=53.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 008105          403 VLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPD--DITHRTLIWGFCRA  480 (577)
Q Consensus       403 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~  480 (577)
                      +...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence            3344444555555555555444432  222233333334445555555555554332210 000  12344444445555


Q ss_pred             CCHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          481 DQVEEAVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       481 g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      |++++|++.|++.......|  ..........++.+.|+.++|...|+++..
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55555555555444322112  122333344444455555555555555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.65  E-value=1.1e-06  Score=74.81  Aligned_cols=128  Identities=11%  Similarity=0.008  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...|..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            455666667777777777777777766653 2255666666666666677777776666666553 33455666666666


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHH--HHHHHHhCCChHHHHHHHHHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNT--ILRTMFDNGKFKQAIGFWKDQ  248 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--li~~~~~~~~~~~A~~~~~~~  248 (577)
                      ...|++++|.+.|++..+.. +.+...+..  ....+...|++++|++.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            66666666666666665542 223333322  222244455555555555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.64  E-value=2.2e-06  Score=76.45  Aligned_cols=124  Identities=10%  Similarity=-0.017  Sum_probs=60.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  272 (577)
                      +...+...|++++|.+.|++..    .|+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|+
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            3334444445555544444442    3344444444455555555555555555444432 3344444445555555555


Q ss_pred             HHHHHHHHHHHHHcCCC--------------C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          273 IARAIEVLDDMAIEGCS--------------P-DIVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       273 ~~~A~~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      +++|.+.|++.......              | ....+..+...+.+.|++++|...+++..+.
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            55555555554443110              0 1144555555666666666666666666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.63  E-value=1.1e-06  Score=71.03  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..+......|.+.|++++|++.|++.++.. +.+..+|..+..++.+.|++++|++.|++.++.. +.+...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            456666777777777777777777777654 2356666667777777777777777777776654 34566666666777


Q ss_pred             HhcCChHHHHHHHHHHhhC
Q 008105          198 CKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~  216 (577)
                      ...|++++|.+.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            7777777777777766654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.61  E-value=3.1e-05  Score=73.52  Aligned_cols=172  Identities=12%  Similarity=0.094  Sum_probs=125.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC-C-ChHHHH
Q 008105          166 DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG-QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN-G-KFKQAI  242 (577)
Q Consensus       166 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-~-~~~~A~  242 (577)
                      +..++|+++++.++..+ +-+..+|+.--..+...| .++++++.++.+.... +.+..+|+.-...+.+. + ++++++
T Consensus        68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence            34468999999999886 446777888878888888 5999999999999875 66788888877777665 6 889999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-------
Q 008105          243 GFWKDQLRKGCPPYLITYTILIEQVCKQCGIA--------RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK-------  307 (577)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------  307 (577)
                      ++++++++.. +.|..+|+--...+.+.|.++        ++++.++++.+.. +-|...|+.....+.+.+.       
T Consensus       146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence            9999998764 567778876666555555555        7888888888765 3367777777777766665       


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC
Q 008105          308 YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGC  342 (577)
Q Consensus       308 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~  342 (577)
                      ++++++.++++....+ -|...|+.+-..+.+.|.
T Consensus       224 ~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          224 LQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence            5677777777766532 255666665555555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.60  E-value=1.6e-06  Score=70.10  Aligned_cols=97  Identities=13%  Similarity=0.040  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTM  232 (577)
Q Consensus       153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  232 (577)
                      ..+......|.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            345556666777777777777777766654 3456666667777777777777777777666553 44566666666677


Q ss_pred             HhCCChHHHHHHHHHHHHC
Q 008105          233 FDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       233 ~~~~~~~~A~~~~~~~~~~  251 (577)
                      ...|++++|++.|++.++.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            7777777777777666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.60  E-value=2.4e-06  Score=72.59  Aligned_cols=127  Identities=13%  Similarity=0.048  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            35555666666777777777777766654 3355666666666666777777777766666543 335556666666666


Q ss_pred             hCCChHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLRKGCPPYLITYTI--LIEQVCKQCGIARAIEVLDDM  283 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~  283 (577)
                      ..|++++|.+.|++..+.. +.+...+..  +...+.+.|++++|.+.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            6666666666666666542 223333322  222344555666666555544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=2e-06  Score=68.82  Aligned_cols=111  Identities=9%  Similarity=0.055  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+...+..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4566666677777777777777777766653 2345566666666666666666666666666543 3345556666666


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +...|++++|...|+++.+.. +.+...+..+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  119 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN  119 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            666666666666666665442 223344443333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=2.3e-06  Score=68.43  Aligned_cols=98  Identities=12%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            3455556666666666666666666666543 3345556666666666666666666666665543 3345555666666


Q ss_pred             HHhCCChHHHHHHHHHHHHC
Q 008105          232 MFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~  251 (577)
                      +...|++++|.+.++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHh
Confidence            66666666666666665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.58  E-value=1.5e-06  Score=70.64  Aligned_cols=120  Identities=12%  Similarity=-0.006  Sum_probs=91.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008105          113 VENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNM  192 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  192 (577)
                      ...+...|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            45567888899999999999999999999988764 3367778888888888888999988888888765 346777888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN  235 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  235 (577)
                      +...+.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence            8888888888888888888877653 23445555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.57  E-value=6.3e-07  Score=84.05  Aligned_cols=98  Identities=11%  Similarity=-0.034  Sum_probs=62.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34556666677777777777777777766653 2255666666666666777777777776666553 334556666666


Q ss_pred             HHHhcCChHHHHHHHHHHhh
Q 008105          196 GLCKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~  215 (577)
                      +|...|++++|...|++..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666666553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.56  E-value=1.9e-05  Score=74.40  Aligned_cols=167  Identities=13%  Similarity=0.028  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHhhCCC---CCC--
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDI------VTYNTVLGALCKEGMLNEALQLLHLLNGSSC---SPC--  431 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--  431 (577)
                      ..+...+..+...|++++|.+.+.+..+.... ..      ..+..+...+...|++++|...+++......   .+.  
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34555677788889999999998887775322 22      2233455566777899999998887765321   111  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CC-c
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMEN-GISPD-----DITHRTLIWGFCRADQVEEAVDLLKEIGKRG----NK-M  500 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~-~  500 (577)
                      ..+++.+...|...|++++|...|++..+. ...|+     ..++..+...|...|++++|.+.+++..+..    .. .
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            347888888899999999999999888621 01122     2577888888999999999999998876521    11 1


Q ss_pred             cHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 008105          501 RNSAYRLVIHGLCKSKKVDMA-IQVLELMIS  530 (577)
Q Consensus       501 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~  530 (577)
                      -..+|..+...+.+.|++++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            156778888888999999999 777777653

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.56  E-value=1.2e-06  Score=77.30  Aligned_cols=157  Identities=10%  Similarity=-0.129  Sum_probs=88.1

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh----CCC-CCCHHHHHHHHHHHHhcCC
Q 008105          373 CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNG----SSC-SPCLITYNTLIDGLAKKGC  447 (577)
Q Consensus       373 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~li~~~~~~g~  447 (577)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++...    .+. +....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            3457777777744444321 223455666677777777777777777766544    111 1223456666666777777


Q ss_pred             HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcc--HHHHHHHHHHHHhcC
Q 008105          448 MEKAMVLYGQMMEN----GISP--DDITHRTLIWGFCRADQVEEAVDLLKEIGKR---GNKMR--NSAYRLVIHGLCKSK  516 (577)
Q Consensus       448 ~~~A~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~--~~~~~~li~~~~~~g  516 (577)
                      +++|.+.+++..+.    +-.|  ....+..+...+...|++++|.+.+++..+.   ...+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            77777777766542    1111  1234556666666777777777777665431   01111  223455666666777


Q ss_pred             ChHHHHHHHHHHHH
Q 008105          517 KVDMAIQVLELMIS  530 (577)
Q Consensus       517 ~~~~A~~~~~~m~~  530 (577)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            77777777766654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=2e-06  Score=69.47  Aligned_cols=119  Identities=8%  Similarity=-0.031  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            45566777777777777777777777777653 2356666666777777777777777777766653 334556666666


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      .+.+.|++++|.+.|++..+.. +.+...+..+..++...|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            6667777777777776666543 3345555555555555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.55  E-value=4.5e-06  Score=78.13  Aligned_cols=194  Identities=11%  Similarity=-0.004  Sum_probs=118.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          361 TVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLID  440 (577)
Q Consensus       361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~  440 (577)
                      +...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            45566777777888888888888888877763 4467777788888888888888888888877764 456677788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChH
Q 008105          441 GLAKKGCMEKAMVLYGQMMENGISPDD-ITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVD  519 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~  519 (577)
                      +|...|++++|...|++..+.+  |+. ..+...+....+   ..++.. +..........+......+.. + ..|+++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~  152 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERE  152 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHH
Confidence            8888888888888888876531  211 011111111111   111111 112222223333333333322 2 268888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 008105          520 MAIQVLELMISSRYKPDDTVF-STIVKKVADD-GMTEEAYKLWQKLIEW  566 (577)
Q Consensus       520 ~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~-g~~~~A~~~~~~~~~~  566 (577)
                      +|.+.+++..+  ..|+.... ..+...+.+. +.+++|.++|.++.+.
T Consensus       153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            88888887774  35554433 3344444444 6678888888877654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.54  E-value=8.4e-06  Score=76.85  Aligned_cols=126  Identities=10%  Similarity=-0.008  Sum_probs=55.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCC---CCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC----HHHHHH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGC---EPD--VITYNTILRTMFDNGKFKQAIGFWKDQLRK--GCPPY----LITYTI  262 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~---~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~  262 (577)
                      ...+...|++++|...+++......   .+.  ..+|+.+...|...|++++|+..|++..+.  ..+.+    ..++..
T Consensus       122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n  201 (293)
T 2qfc_A          122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN  201 (293)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence            3334444455555555544432210   111  234444555555555555555555544411  00111    134445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 008105          263 LIEQVCKQCGIARAIEVLDDMAIEG----CSP-DIVTYNSLVNFSCKQGKYDDA-VLVINNLL  319 (577)
Q Consensus       263 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  319 (577)
                      +...|.+.|++++|.+.+++.....    ... -..+|..+...|.+.|++++| ...+++..
T Consensus       202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            5555555555555555555544321    000 134455555556666666655 44454443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.53  E-value=1.1e-06  Score=73.31  Aligned_cols=94  Identities=11%  Similarity=0.005  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..+...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.|++..+.. +.+...|..+..+|..
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            3334444444444444444444444432 2234444444444444444444444444444332 2233344444444444


Q ss_pred             CCChHHHHHHHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLR  250 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~  250 (577)
                      .|++++|++.|++.++
T Consensus       117 lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQ  132 (151)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            4444444444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.51  E-value=1.4e-06  Score=72.68  Aligned_cols=105  Identities=9%  Similarity=0.054  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .+...+..+...+.+.|++++|+..|++++...+ .+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+.
T Consensus        34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg  111 (151)
T 3gyz_A           34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence            3567888999999999999999999999999853 488899999999999999999999999999886 44678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVI  223 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~  223 (577)
                      .+|.+.|++++|.+.|++..+.  .|+..
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            9999999999999999999876  45554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.51  E-value=2.6e-06  Score=78.13  Aligned_cols=187  Identities=11%  Similarity=-0.043  Sum_probs=118.6

Q ss_pred             hcCChhhHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------
Q 008105          129 SRGKLTDASKLIDIMARRNQIPDFHFCINL-------IRGLIRIDRIEKASKVLQIMVMSGGVPD---------------  186 (577)
Q Consensus       129 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------  186 (577)
                      ..++...|.+.|.++.+..+. ....|..+       ...+.+.++..++...+..-...  .|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence            578888888888888887533 66677766       45565555555555555554441  111               


Q ss_pred             -------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--H
Q 008105          187 -------TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPY--L  257 (577)
Q Consensus       187 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~  257 (577)
                             ...+-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1233445666777888888888887776543  433355556667777888888888776543321 111  2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          258 ITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPD--IVTYNSLVNFSCKQGKYDDAVLVINNLLSR  321 (577)
Q Consensus       258 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  321 (577)
                      ..+..+..++.+.|++++|++.|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3556666777777888888887777764322132  234555666777777777777777777766

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.51  E-value=1.9e-06  Score=82.99  Aligned_cols=87  Identities=10%  Similarity=-0.094  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      ..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+...+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            445555555555555555555555555443 3345555555555555555555555555555442 33445555555555


Q ss_pred             HHcCCHHHH
Q 008105          268 CKQCGIARA  276 (577)
Q Consensus       268 ~~~g~~~~A  276 (577)
                      .+.|+.++|
T Consensus       275 ~~~~~~~~a  283 (336)
T 1p5q_A          275 QRIRRQLAR  283 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555555

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.51  E-value=1.6e-06  Score=74.90  Aligned_cols=122  Identities=11%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 008105          128 CSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG-LCKRGQI--R  204 (577)
Q Consensus       128 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~--~  204 (577)
                      ...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+... +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            45788999999999988874 3477888999999999999999999999998875 4467788888888 7788998  9


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 008105          205 SAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       205 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~  252 (577)
                      +|...|++..+.. +.+...+..+...+...|++++|...|++..+..
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            9999999988764 4567888888899999999999999999988764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.51  E-value=1.5e-06  Score=76.73  Aligned_cols=132  Identities=8%  Similarity=-0.067  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC--CC
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVS----GCE-PDVITYNTILRTMFDNGKFKQAIGFWKDQLRK----GCP--PY  256 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~~  256 (577)
                      ..+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++++|.+.+++..+.    +-.  ..
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            34444444444445555554444444321    101 12234444555555555555555555554332    101  11


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          257 LITYTILIEQVCKQCGIARAIEVLDDMAIEG---CSPD--IVTYNSLVNFSCKQGKYDDAVLVINNLL  319 (577)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~  319 (577)
                      ...+..+...+...|++++|.+.+++.....   -.+.  ..++..+...+...|++++|.+.+++..
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            2334455555666666666666665554310   0011  1234555566666666666666665544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.50  E-value=3.8e-06  Score=67.75  Aligned_cols=117  Identities=11%  Similarity=0.053  Sum_probs=61.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            3344555555556666666666666655543 2345555555555556666666666665555432 2334555555555


Q ss_pred             HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          232 MFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      +...|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence            555555555555555555432 234444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.50  E-value=2.7e-06  Score=69.09  Aligned_cols=97  Identities=11%  Similarity=0.031  Sum_probs=44.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            3344444444555555555555555554432 2234444444444444555555555554444332 2234444444444


Q ss_pred             HHhCCChHHHHHHHHHHHH
Q 008105          232 MFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~  250 (577)
                      +...|++++|.+.|++..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            4444444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.49  E-value=1.7e-06  Score=74.63  Aligned_cols=121  Identities=10%  Similarity=0.087  Sum_probs=85.7

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhCCCh--H
Q 008105          163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT-MFDNGKF--K  239 (577)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~~~~--~  239 (577)
                      ...|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            35677777888888777664 4466777888888888888888888888877653 3466677777777 6677777  8


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          240 QAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       240 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      +|...+++.++.. +.+...+..+...+...|++++|...|+++...
T Consensus        99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            8888888777653 445667777777777888888888888777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.45  E-value=9.3e-07  Score=73.84  Aligned_cols=93  Identities=14%  Similarity=-0.025  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..... +.+...+..+..+|..
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence            3334444444444444444444444332 2234444444444444444444444444444332 2233344444444444


Q ss_pred             CCChHHHHHHHHHHH
Q 008105          235 NGKFKQAIGFWKDQL  249 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~  249 (577)
                      .|++++|.+.|++.+
T Consensus       102 ~g~~~~A~~~~~~al  116 (148)
T 2vgx_A          102 XGELAEAESGLFLAQ  116 (148)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            444444444444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.44  E-value=0.0002  Score=67.69  Aligned_cols=191  Identities=7%  Similarity=-0.022  Sum_probs=123.0

Q ss_pred             HHHhcCChh-hHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          126 NFCSRGKLT-DASKLIDIMARRNQIPDFHFCINLIRGLIRIDR----------IEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       126 ~~~~~g~~~-~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      ...+.|+++ +|+.+++.++..++. +..+|+.--..+...++          +++++.+++.+.... +.+..+|+.-.
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~  115 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC  115 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            344566666 788888888887533 55666665444443333          577888888887765 45777777777


Q ss_pred             HHHHhcCC--hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q 008105          195 GGLCKRGQ--IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK-FKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ-  270 (577)
Q Consensus       195 ~~~~~~g~--~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  270 (577)
                      ..+.+.|+  ++++++.++++.+.. +.|..+|+.-.-.+...|. ++++++.++++++.. +-|..+|+.....+.+. 
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHS
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhh
Confidence            77777773  778888888887765 5677777777767777777 578888888887764 55777777666555544 


Q ss_pred             -------------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHhhC
Q 008105          271 -------------CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQ-----------GKYDDAVLVINNLLSR  321 (577)
Q Consensus       271 -------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~  321 (577)
                                   +.++++++.++...... +-|...|+-+-..+.+.           +.++++++.++++.+.
T Consensus       194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence                         33566666666666553 33556665444444433           2344555555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=4.9e-06  Score=80.12  Aligned_cols=94  Identities=9%  Similarity=-0.091  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 008105          223 ITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFS  302 (577)
Q Consensus       223 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  302 (577)
                      ..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..++...|++++|.+.|+++.... +.+...+..+...+
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            455555566666666666666666655542 3455555556666666666666666666655542 22344555555555


Q ss_pred             HhcCCHHHH-HHHHHHH
Q 008105          303 CKQGKYDDA-VLVINNL  318 (577)
Q Consensus       303 ~~~g~~~~A-~~~~~~m  318 (577)
                      .+.|+.++| ...++.|
T Consensus       275 ~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            556665555 2344444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=1.2e-05  Score=63.46  Aligned_cols=98  Identities=12%  Similarity=-0.066  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            4556667777777777777777777777653 2356666667777777777777777777776654 3355666666677


Q ss_pred             HHhcCChHHHHHHHHHHhhC
Q 008105          197 LCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~  216 (577)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            77777777777777766654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.42  E-value=0.00013  Score=68.98  Aligned_cols=137  Identities=10%  Similarity=0.033  Sum_probs=68.4

Q ss_pred             HhcCCHH-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          303 CKQGKYD-DAVLVINNLLSRGMEPNSITYNTLLHSLGSRGC----------WDAVDKILDIMNEASHSPTVFTYNILING  371 (577)
Q Consensus       303 ~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~  371 (577)
                      .+.|.+. +|+.+++.+....+. +...|+.--..+...+.          ++++..+++.+.... +.+..+|+.-...
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3445443 677777777765321 23344433333322222          345555555555443 2355555555555


Q ss_pred             HHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          372 LCKYGL--VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM-LNEALQLLHLLNGSSCSPCLITYNTLIDGLA  443 (577)
Q Consensus       372 ~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~  443 (577)
                      +.+.++  +++++.+++++.+.. +-|..+|+--...+...|. +++++..++.+.+.. +-|...|+.....+.
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~  190 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP  190 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            555552  556666666666553 4455555555555555555 355555555555543 334445544444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.41  E-value=1.8e-06  Score=72.08  Aligned_cols=99  Identities=11%  Similarity=-0.082  Sum_probs=68.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIE  265 (577)
Q Consensus       186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  265 (577)
                      +...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|++.|++.+... |.+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34456666677777777777777777776654 4466777777777777777777777777776653 445566666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHc
Q 008105          266 QVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       266 ~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      .+...|++++|.+.|+.....
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.36  E-value=9.9e-07  Score=77.84  Aligned_cols=96  Identities=8%  Similarity=-0.117  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---------------TITYNMMVGGLCKRGQIRSAIALLDEMSVSGC  218 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~  218 (577)
                      .+..+...+.+.|++++|.+.|++.++......               ...|..+..+|.+.|++++|...+++..+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            344455555555666666666665554321100               1344444444555555555555555444432 


Q ss_pred             CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          219 EPDVITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       219 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      +.+...+..+..+|...|++++|++.|++.++
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            23344444444444455555555555544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.35  E-value=9e-06  Score=65.67  Aligned_cols=97  Identities=9%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV--PD----TITYN  191 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~----~~~~~  191 (577)
                      ..+..+...+.+.|++++|+..|++.++..+ .+..+|..+..+|.+.|++++|++.+++.++....  ++    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            4566677777777777777777777776542 35666666777777777777777777766653211  11    12445


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhh
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~  215 (577)
                      .+...+...|++++|++.|++...
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555666666666666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.5e-05  Score=64.19  Aligned_cols=96  Identities=14%  Similarity=0.043  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            455666666777777777777777766653 2355666666666666777777777776666654 33455666666666


Q ss_pred             HhcCChHHHHHHHHHHhh
Q 008105          198 CKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~  215 (577)
                      ...|++++|.+.|++..+
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            666666666666666654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.34  E-value=2.1e-05  Score=61.94  Aligned_cols=98  Identities=10%  Similarity=0.036  Sum_probs=62.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ...+..+...+...|++++|.+.|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3445556666667777777777777766654 3355666666666667777777777776666543 3345566666666


Q ss_pred             HHhCCChHHHHHHHHHHHHC
Q 008105          232 MFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~  251 (577)
                      +...|++++|.+.+++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHc
Confidence            66666666666666666554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.32  E-value=1.4e-05  Score=64.33  Aligned_cols=98  Identities=14%  Similarity=0.011  Sum_probs=67.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRT  231 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  231 (577)
                      ...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3445666666777777777777777777664 3456677777777777777777777777776653 3456667777777


Q ss_pred             HHhCCChHHHHHHHHHHHHC
Q 008105          232 MFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       232 ~~~~~~~~~A~~~~~~~~~~  251 (577)
                      +...|++++|.+.|++.++.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            77777777777777766653

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.31  E-value=9.8e-06  Score=71.32  Aligned_cols=132  Identities=8%  Similarity=-0.083  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD---------------FHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      ...+..+...+.+.|++++|+..|++.++......               ..++..+..++.+.|++++|+..++..++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            35677888999999999999999999998643211               268888999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHH-HHHHHHHH
Q 008105          182 GGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAI-GFWKDQLR  250 (577)
Q Consensus       182 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~-~~~~~~~~  250 (577)
                      . +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++. ..|..+..
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5 4578889999999999999999999999988764 446777888877777777666665 44555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.29  E-value=1.2e-05  Score=62.75  Aligned_cols=96  Identities=10%  Similarity=0.038  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVP--DTITYNMMVG  195 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~  195 (577)
                      ..+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            344445555555555555555555555442 1234444444444555555555555555544432 12  3444444444


Q ss_pred             HHHhc-CChHHHHHHHHHHhh
Q 008105          196 GLCKR-GQIRSAIALLDEMSV  215 (577)
Q Consensus       196 ~~~~~-g~~~~A~~~~~~~~~  215 (577)
                      .+.+. |++++|.+.+++...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhh
Confidence            44444 455555544444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=3.6e-05  Score=63.59  Aligned_cols=113  Identities=11%  Similarity=0.016  Sum_probs=88.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTIT  189 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~  189 (577)
                      ..+...+..+...+.+.|++++|.+.|++..+..  |+    ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  101 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA  101 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence            3567888999999999999999999999998864  44    6777888888889999999999998888764 346777


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          190 YNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       190 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +..+..+|...|++++|.+.|++..+.. +.+...+..+..
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence            8888888888899999999888887653 334444444333

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.26  E-value=1.3e-05  Score=66.13  Aligned_cols=99  Identities=12%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...+..+...+.+.|++++|...|++....++ .+...|..+..++.+.|++++|+..|+...+.. +.+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            344556667777777777777777777776642 366666777777777777777777777777664 335556666677


Q ss_pred             HHHhcCChHHHHHHHHHHhhC
Q 008105          196 GLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      +|...|++++|.+.|++..+.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.26  E-value=1.3e-05  Score=62.49  Aligned_cols=100  Identities=7%  Similarity=-0.140  Sum_probs=88.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEP--DVITYNTI  228 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~l  228 (577)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            56677888899999999999999999998875 4577889999999999999999999999998874 44  68899999


Q ss_pred             HHHHHhC-CChHHHHHHHHHHHHCC
Q 008105          229 LRTMFDN-GKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       229 i~~~~~~-~~~~~A~~~~~~~~~~~  252 (577)
                      ...+... |++++|.+.+++.....
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            9999999 99999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.25  E-value=1.4e-05  Score=65.28  Aligned_cols=100  Identities=11%  Similarity=-0.044  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .+...|..+...+.+.|++++|...|++.+... +.+...+..+...+...|++++|...++...+.. +.+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            456777788888888888888888888877764 3356777777777788888888888888777765 34566777777


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      ..|...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            7777788888887777776643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.25  E-value=1e-05  Score=65.15  Aligned_cols=108  Identities=10%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGG--VPD----TITYN  191 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~  191 (577)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+...  .++    ...+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456667777777777777777777777653 33566666677777777777777777777665431  111    45566


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTI  228 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  228 (577)
                      .+...|.+.|++++|.+.|++..+.  .|+...+..+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l  118 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence            6666666667777777666666654  2444444333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.24  E-value=8.8e-06  Score=65.73  Aligned_cols=108  Identities=17%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--Ccc----HHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN--KMR----NSAY  505 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~  505 (577)
                      ...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..+...  .++    ..+|
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3456677778888888888888888887642 23466777788888888888888888887765321  111    2356


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          506 RLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFST  542 (577)
Q Consensus       506 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  542 (577)
                      ..+..++...|++++|++.|++.++.  .||+.+...
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence            66677777788888888888777642  466555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=1.6e-05  Score=65.58  Aligned_cols=95  Identities=11%  Similarity=-0.044  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMF  233 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  233 (577)
                      .+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            34444555555666666666666655543 3345555555555666666666666666555443 334445555555555


Q ss_pred             hCCChHHHHHHHHHHHH
Q 008105          234 DNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       234 ~~~~~~~A~~~~~~~~~  250 (577)
                      ..|++++|.+.|++.++
T Consensus        98 ~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.23  E-value=1.2e-05  Score=68.27  Aligned_cols=100  Identities=14%  Similarity=0.024  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI  509 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li  509 (577)
                      .+...+..+...+.+.|++++|...|++.++.. +.+...|..+..+|...|++++|...|++..+... .+...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            356678888999999999999999999998753 33688899999999999999999999999988653 3577888999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHC
Q 008105          510 HGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      .++...|++++|.+.|++.++.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999999863

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.22  E-value=3.1e-05  Score=63.14  Aligned_cols=98  Identities=10%  Similarity=-0.058  Sum_probs=55.4

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      +...+..+...+...|++++|...|+..++.. +.+...|..+...+...|++++|...+++..+.. +.+...|..+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            44555555666666666666666666655543 2345555555666666666666666666555443 334555555555


Q ss_pred             HHHhCCChHHHHHHHHHHHH
Q 008105          231 TMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~  250 (577)
                      ++...|++++|+..|++..+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            55555555555555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.20  E-value=3.3e-05  Score=65.50  Aligned_cols=98  Identities=8%  Similarity=-0.032  Sum_probs=53.1

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      +...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34455556666666666666666666665543 2245555555555555555555555555555543 223445555555


Q ss_pred             HHHhcCChHHHHHHHHHHhh
Q 008105          196 GLCKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~  215 (577)
                      +|.+.|++++|.+.|++..+
T Consensus        88 ~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHH
Confidence            55555555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.19  E-value=2e-05  Score=63.43  Aligned_cols=108  Identities=15%  Similarity=0.102  Sum_probs=70.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCC----HHHHH
Q 008105          153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGC--EPD----VITYN  226 (577)
Q Consensus       153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~----~~~~~  226 (577)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++......  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            456666777777788888888887777664 34566777777777777888887777777665420  111    55666


Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          227 TILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL  263 (577)
Q Consensus       227 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  263 (577)
                      .+...+...|++++|.+.|++..+..  |+......+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l  118 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence            66677777777777777777766542  344444333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.19  E-value=1.5e-05  Score=63.72  Aligned_cols=96  Identities=13%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008105          471 RTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADD  550 (577)
Q Consensus       471 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  550 (577)
                      ..+...+.+.|++++|...|++..+... .+...|..+..++...|++++|+..+++.++.. +.+...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            3344455556666666666666555432 244555556666666666666666666665432 12345555566666666


Q ss_pred             CCHHHHHHHHHHHHHcCC
Q 008105          551 GMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       551 g~~~~A~~~~~~~~~~~~  568 (577)
                      |++++|+..+++.++.++
T Consensus        99 g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            666666666666655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00013  Score=72.81  Aligned_cols=197  Identities=8%  Similarity=-0.065  Sum_probs=106.2

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 008105          334 LHSLGSRGCWDAVDKILDIMNEASHSPTV----------------FTYNILINGLCKYGLVDRAINSFNQMVSKN-CQPD  396 (577)
Q Consensus       334 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~  396 (577)
                      ...+.+.|++++|.+.+..+.+.......                ..+..+...|.+.|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34556777888888888777765432111                135566777777777777777777665421 0111


Q ss_pred             HH----HHHHHHHHHHhcCChhHHHHHHHHHhh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 008105          397 IV----TYNTVLGALCKEGMLNEALQLLHLLNG----SSCSP-CLITYNTLIDGLAKKGCMEKAMVLYGQMMEN--GI--  463 (577)
Q Consensus       397 ~~----~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--  463 (577)
                      ..    +.+.+-..+...|+++.|..++.....    .+..+ -..++..+...|...|++++|..++++....  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            11    112222223344666677666655432    11111 2345556666666777777777766665431  11  


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcc--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          464 SP-DDITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKMR--NSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       464 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .+ ....+..++..|...|++++|..++++....    +.++.  ...+..+...+...|++++|...|.+..+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            11 1335566666666667777777666665431    11111  23344555555666666666666666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.18  E-value=1.6e-05  Score=63.59  Aligned_cols=96  Identities=11%  Similarity=-0.012  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+..+...+.+.|++++|+..|++.++..+ .+...|..+..++.+.|++++|+..|++.++.. +.+...+..+...|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            355677788888899999998888888743 377778888888888888888888888888775 346677788888888


Q ss_pred             hcCChHHHHHHHHHHhhC
Q 008105          199 KRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~  216 (577)
                      +.|++++|...|++..+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888887754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=7.2e-05  Score=61.73  Aligned_cols=99  Identities=9%  Similarity=-0.075  Sum_probs=67.9

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 008105          150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD----TITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITY  225 (577)
Q Consensus       150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~  225 (577)
                      .+...+..+...+.+.|++++|.+.|++..+..  |+    ...|..+...|...|++++|.+.+++..+.. +.+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            355666677777777888888888888777653  34    5566667777777777777777777766543 3356666


Q ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105          226 NTILRTMFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       226 ~~li~~~~~~~~~~~A~~~~~~~~~~  251 (577)
                      ..+..++...|++++|.+.|++.++.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            66667777777777777777766654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.14  E-value=1.9e-05  Score=66.25  Aligned_cols=134  Identities=12%  Similarity=0.038  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-cH
Q 008105          433 ITYNTLIDGLAKKGCMEKAMVLYGQMMENGI-SPD----DITHRTLIWGFCRADQVEEAVDLLKEIGKR----GNKM-RN  502 (577)
Q Consensus       433 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~  502 (577)
                      .++..+...+...|++++|...+++..+... .++    ...+..+...+...|++++|.+.+++..+.    +..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            3455666666677777777777766654210 011    135666777777778888888877776541    1111 13


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          503 SAYRLVIHGLCKSKKVDMAIQVLELMISS----RYKP-DDTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      ..+..+...+...|++++|.+.+++..+.    +..+ ....+..+...+...|++++|.+.+++.++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            45666777788888888888888877642    1111 1345667778888888888888888887763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.00014  Score=72.56  Aligned_cols=57  Identities=5%  Similarity=0.065  Sum_probs=36.5

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDF----------------HFCINLIRGLIRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~  180 (577)
                      .+.+.+.|++++|++.|..+.+.......                .++..+...|.+.|++++|.+.+..+.+
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            46678889999999999888876433211                1244556666666666666666655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=2.4e-05  Score=65.64  Aligned_cols=96  Identities=14%  Similarity=0.011  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----H
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQI-PD----FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-PD----T  187 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~  187 (577)
                      .++..+...|...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++..+.... .+    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            45677777788888888888888776653111 01    124555555566666666666666655432100 01    2


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEM  213 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~  213 (577)
                      ..+..+...+...|++++|.+.+++.
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            23444444455555555555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.08  E-value=3.3e-05  Score=77.81  Aligned_cols=88  Identities=10%  Similarity=-0.054  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          188 ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       188 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      ..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+...+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            455555555666666666666666555443 3345555566666666666666666666655442 33444555555555


Q ss_pred             HHcCCHHHHH
Q 008105          268 CKQCGIARAI  277 (577)
Q Consensus       268 ~~~g~~~~A~  277 (577)
                      .+.++.+++.
T Consensus       396 ~~~~~~~~a~  405 (457)
T 1kt0_A          396 KKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.07  E-value=0.00016  Score=58.03  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=62.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDF---HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD---TITYNMMV  194 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li  194 (577)
                      ..+...+.+.|++++|...|+++.+..+. +.   ..+..+..++.+.|++++|...|+...+..+ .+   ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHH
Confidence            34566677777788887777777765322 22   3566666777777777777777777776542 22   45566666


Q ss_pred             HHHHhcCChHHHHHHHHHHhhC
Q 008105          195 GGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      .++.+.|++++|...|+++.+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777776654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.02  E-value=1.4e-05  Score=63.48  Aligned_cols=87  Identities=14%  Similarity=0.007  Sum_probs=63.6

Q ss_pred             hcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008105          129 SRGKLTDASKLIDIMARRN--QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSA  206 (577)
Q Consensus       129 ~~g~~~~A~~l~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A  206 (577)
                      ..|++++|+..|++.++.+  -+.+..++..+...|.+.|++++|++.|++.++.. +.+...+..+..++.+.|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            3578888888888888764  23355677778888888888888888888888775 34577777888888888888888


Q ss_pred             HHHHHHHhhC
Q 008105          207 IALLDEMSVS  216 (577)
Q Consensus       207 ~~~~~~~~~~  216 (577)
                      .+.|++..+.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888887654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.02  E-value=0.0002  Score=57.48  Aligned_cols=95  Identities=8%  Similarity=0.014  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHH
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDT---ITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD---VITYNTI  228 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~l  228 (577)
                      +..+...+.+.|++++|.+.|+.+.+..+ .+.   ..+..+...+.+.|++++|...|++..+.. +.+   ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence            33455666777788888887777776542 222   456666777777777777777777776553 222   5556667


Q ss_pred             HHHHHhCCChHHHHHHHHHHHHC
Q 008105          229 LRTMFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       229 i~~~~~~~~~~~A~~~~~~~~~~  251 (577)
                      ..++...|++++|...|+++...
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777777777664

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.99  E-value=1.6e-05  Score=80.51  Aligned_cols=120  Identities=12%  Similarity=0.015  Sum_probs=82.0

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ...+.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence            344566788888888888888764 3357777888888888888888888888888765 34667777788888888888


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhCCChHHHHHHHH
Q 008105          204 RSAIALLDEMSVSGCEPDVITYNTILRT--MFDNGKFKQAIGFWK  246 (577)
Q Consensus       204 ~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~~~~~~A~~~~~  246 (577)
                      ++|.+.|++..+.. +.+...+..+..+  +.+.|++++|++.++
T Consensus        91 ~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888888777653 2233444444444  666777777777766

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.94  E-value=0.00012  Score=73.70  Aligned_cols=97  Identities=6%  Similarity=-0.019  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 008105          222 VITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNF  301 (577)
Q Consensus       222 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  301 (577)
                      ...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..+
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~  394 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4677778888888888888888888888764 5577788888888888888888888888887753 2345677777788


Q ss_pred             HHhcCCHHHHH-HHHHHHhh
Q 008105          302 SCKQGKYDDAV-LVINNLLS  320 (577)
Q Consensus       302 ~~~~g~~~~A~-~~~~~m~~  320 (577)
                      +.+.++.+++. ..+..|..
T Consensus       395 ~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          395 QKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            88888877765 34555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.93  E-value=8.5e-05  Score=72.33  Aligned_cols=137  Identities=10%  Similarity=-0.099  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+..+...+.+.|++++|+..|++.++.-  ++.          ......+++.       +.. +.+...|..+..+|.
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence            35666677777777777777777666520  000          0000000000       010 123455666666666


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAI  277 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  277 (577)
                      +.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++.++.. +.+...+..+...+.+.++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666543 3355666666666666667777766666666542 335555555656666555555554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.91  E-value=3.2e-05  Score=78.28  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=80.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      +...+.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            3344566788888888888877764 3457777778888888888888888888877764 4466777777777888888


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 008105          238 FKQAIGFWKDQLRKGCPPYLITYTILIEQ--VCKQCGIARAIEVLD  281 (577)
Q Consensus       238 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  281 (577)
                      +++|++.|++.++.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888887777653 2233344444444  666777777777766

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.91  E-value=0.00014  Score=70.81  Aligned_cols=137  Identities=10%  Similarity=-0.048  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..+...+.+.|++++|++.|++.++.-  ++          ......       .++..... +.+...|..+..+|.+
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAE-------DADGAKLQ-PVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccC-------hHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            5556667777777777777777766420  00          000001       11111111 2356788899999999


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVL  313 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  313 (577)
                      .|++++|++.+++.++.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...++.+++.+
T Consensus       286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999864 5578899999999999999999999999998874 3366778888888888888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.89  E-value=0.00016  Score=61.07  Aligned_cols=99  Identities=7%  Similarity=-0.010  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CC---------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARR--------NQ---------IPDFHFCINLIRGLIRIDRIEKASKVLQIMV  179 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--------~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  179 (577)
                      ...+......+.+.|++++|+..|.+.+..        ..         +.+...|..+..+|.+.|++++|+..++..+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456788889999999999999999888764        10         1122345555555556666666666666655


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105          180 MSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       180 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      +.. +.+...|..+..+|...|++++|...|++..+.
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            543 334555555555566666666666666555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.88  E-value=2.6e-05  Score=61.85  Aligned_cols=87  Identities=14%  Similarity=0.052  Sum_probs=61.8

Q ss_pred             hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHH
Q 008105          444 KKGCMEKAMVLYGQMMENG--ISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMA  521 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A  521 (577)
                      ..|++++|+..|++.++.+  -+.+...+..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence            3577888888888888753  1223556777888888888888888888888775432 466777788888888888888


Q ss_pred             HHHHHHHHHC
Q 008105          522 IQVLELMISS  531 (577)
Q Consensus       522 ~~~~~~m~~~  531 (577)
                      +..+++.++.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8888887753

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.83  E-value=0.00024  Score=59.82  Aligned_cols=99  Identities=13%  Similarity=-0.014  Sum_probs=63.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMS--------GG---------VPDTITYNMMVGGLCKRGQIRSAIALLDEMS  214 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  214 (577)
                      ...+......+.+.|++++|+..|++.++.        ..         +.+...|..+..+|.+.|++++|...+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345666778888999999999999888764        10         1123455556666666666666666666665


Q ss_pred             hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 008105          215 VSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRK  251 (577)
Q Consensus       215 ~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~  251 (577)
                      +.. +.+...|..+..+|...|++++|...|++.+..
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            543 345556666666666666666666666665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.83  E-value=8.6e-05  Score=74.70  Aligned_cols=125  Identities=9%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-HHHHHH
Q 008105          442 LAKKGCMEKAMVLYGQMMEN---GISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-NSAYRL  507 (577)
Q Consensus       442 ~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~  507 (577)
                      +...|++++|+.++++..+.   -+.|+    ..+++.|..+|...|++++|..++++..+     .|. .|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34556666666666655431   11121    33566666666666666666666666543     121 122 334666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          508 VIHGLCKSKKVDMAIQVLELMIS---SRYKPD----DTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       508 li~~~~~~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      |...|...|++++|+.++++.++   .-+-|+    ..+...+..++...|++++|+.++.++.+.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667777777777776666653   111122    233344555666667777777777776653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.83  E-value=5.6e-05  Score=72.72  Aligned_cols=149  Identities=9%  Similarity=0.001  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...+..+...+.+.|++++|...|++.+...  |+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            3456777888888899999999998887753  33221       112233333322211          1356677777


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ-VCKQCGIAR  275 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  275 (577)
                      |.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|++.++.. +.+...+..+... ....+..+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888887777653 4467777777888888888888888887776542 2234444444443 233455667


Q ss_pred             HHHHHHHHHHc
Q 008105          276 AIEVLDDMAIE  286 (577)
Q Consensus       276 A~~~~~~~~~~  286 (577)
                      +.+.|..|...
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            77777777654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.83  E-value=4.2e-05  Score=73.57  Aligned_cols=152  Identities=12%  Similarity=0.055  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          397 IVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWG  476 (577)
Q Consensus       397 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  476 (577)
                      ...+..+...+.+.|++++|...|+......  |+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            3445555556666667777777666655432  22211       112222233222111          1367888889


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCCHH
Q 008105          477 FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPD-DTVFSTIVKK-VADDGMTE  554 (577)
Q Consensus       477 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~-~~~~g~~~  554 (577)
                      |.+.|++++|+..+++..+... .+...|..+..+|...|++++|...|++.++  +.|+ ...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887642 3677888899999999999999999999874  3454 4445555544 34456778


Q ss_pred             HHHHHHHHHHHcCCCC
Q 008105          555 EAYKLWQKLIEWKVFE  570 (577)
Q Consensus       555 ~A~~~~~~~~~~~~~~  570 (577)
                      ++.+.++++.+..+.+
T Consensus       317 ~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          317 KQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHhhCCCCCC
Confidence            8888999998866544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.82  E-value=0.00025  Score=58.63  Aligned_cols=63  Identities=11%  Similarity=0.008  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC------Ch-----hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIP------DF-----HFCINLIRGLIRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~  180 (577)
                      ..+......+.+.|++++|+..|++.++..+..      +.     ..|..+..++.+.|++++|+..+++.++
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~   85 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   85 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345667777888888888888888887764321      11     1555555556666666666666555554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.81  E-value=0.00016  Score=59.77  Aligned_cols=96  Identities=14%  Similarity=0.088  Sum_probs=56.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCc------c-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCC
Q 008105          472 TLIWGFCRADQVEEAVDLLKEIGKRGNKM------R-----NSAYRLVIHGLCKSKKVDMAIQVLELMISS-----RYKP  535 (577)
Q Consensus       472 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p  535 (577)
                      .....+.+.|++++|.+.|++..+.....      +     ...|..+..++.+.|++++|+..+++.++.     .+.|
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p   95 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence            33344445555555555555544421110      1     226666667777777777777777776642     1145


Q ss_pred             C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008105          536 D-DTVF----STIVKKVADDGMTEEAYKLWQKLIEWK  567 (577)
Q Consensus       536 ~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (577)
                      + ...|    .....++...|++++|+..|++.++..
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            4 4456    677777777777777777777777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.80  E-value=0.0015  Score=67.24  Aligned_cols=175  Identities=7%  Similarity=-0.025  Sum_probs=122.9

Q ss_pred             HhcCC-hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          128 CSRGK-LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR----------IEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       128 ~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      .+.|+ -++|++.++.++..++. +..+|+.--..+.+.|+          ++++++.++.+.+.. +-+..+|+.-...
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~  116 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL  116 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            34444 45778888888887543 66777777666766666          888888888888776 4577778877777


Q ss_pred             HHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008105          197 LCKRG--QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG-KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQ---  270 (577)
Q Consensus       197 ~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  270 (577)
                      +.+.|  +++++++.++++.+.. +.+..+|+.-.-.+.+.| .++++++.++++++.. +-|..+|+.....+.+.   
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCC
T ss_pred             HHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccc
Confidence            77888  6688888888888765 567778887777777777 7888888888877653 55777777766666553   


Q ss_pred             -----------CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 008105          271 -----------CGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK  307 (577)
Q Consensus       271 -----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  307 (577)
                                 +.++++.+.+++..... +-|...|+.+-..+.+.++
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence                       34566677776666543 3355666666555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.77  E-value=0.00083  Score=54.81  Aligned_cols=77  Identities=5%  Similarity=-0.108  Sum_probs=31.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 008105          167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAI  242 (577)
Q Consensus       167 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~  242 (577)
                      ++++|.++|++..+.| .++..    +...|...+.+++|.+.|++..+.|   +...+..|...|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            3444444444444443 22221    3333333344444444444444332   33344444444433    34444444


Q ss_pred             HHHHHHHHC
Q 008105          243 GFWKDQLRK  251 (577)
Q Consensus       243 ~~~~~~~~~  251 (577)
                      +.|++..+.
T Consensus        82 ~~~~~Aa~~   90 (138)
T 1klx_A           82 QYYSKACGL   90 (138)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.74  E-value=0.0015  Score=67.25  Aligned_cols=172  Identities=9%  Similarity=0.011  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-
Q 008105          378 VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGM----------LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG-  446 (577)
Q Consensus       378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-  446 (577)
                      .++|++.++++...+ +-+..+|+.--..+.+.|+          ++++++.++.+.+.. +.+..+|+.-.-.+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            456677777777664 4455556555555555555          777777777777665 556777777777777777 


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhc---------
Q 008105          447 -CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD-QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKS---------  515 (577)
Q Consensus       447 -~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------  515 (577)
                       +++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             6688888888887754 346777777777777777 788888888888776543 667777666666552         


Q ss_pred             -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008105          516 -----KKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTE  554 (577)
Q Consensus       516 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~  554 (577)
                           +.++++++.+++++... +-|...|..+-..+.+.++.+
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~  243 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD  243 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence                 45788888888887642 335677777777777666643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.74  E-value=0.0011  Score=54.12  Aligned_cols=111  Identities=14%  Similarity=0.008  Sum_probs=70.1

Q ss_pred             CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 008105          131 GKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK----RGQIRSA  206 (577)
Q Consensus       131 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A  206 (577)
                      +++++|++.|++..+.|   +....  +...|...+.+++|.++|++..+.|   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35667777777776665   22222  5555555566666777777776654   55666666666666    6677777


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 008105          207 IALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       207 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~  252 (577)
                      .+.|++..+.|   +...+..|...|..    .+++++|.+.|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777766654   55566666666666    666667777666666655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=5.2e-05  Score=59.05  Aligned_cols=95  Identities=12%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPD------TIT  189 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~  189 (577)
                      +...|..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|++.+++.++... .+      ...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHHHHHHHH
Confidence            45667778888888888888888888887764 33667777777888888888888888888876542 12      444


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 008105          190 YNMMVGGLCKRGQIRSAIALLDE  212 (577)
Q Consensus       190 ~~~li~~~~~~g~~~~A~~~~~~  212 (577)
                      +..+..++...|+++.|.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            55555555556655555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00013  Score=56.64  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-------HH
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD-------VI  223 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-------~~  223 (577)
                      +...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..++.+.|++++|.+.+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            34456666666777777777777777776654 3356666666777777777777777777766542  32       33


Q ss_pred             HHHHHHHHHHhCCChHHHH
Q 008105          224 TYNTILRTMFDNGKFKQAI  242 (577)
Q Consensus       224 ~~~~li~~~~~~~~~~~A~  242 (577)
                      .+..+..++...|+++.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHHhHhhhH
Confidence            4444444444444444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.50  E-value=0.0004  Score=69.84  Aligned_cols=52  Identities=19%  Similarity=0.100  Sum_probs=25.3

Q ss_pred             HccCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008105          338 GSRGCWDAVDKILDIMNEA-----S--HSPTVFTYNILINGLCKYGLVDRAINSFNQMV  389 (577)
Q Consensus       338 ~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  389 (577)
                      ...|++++|..++++..+.     |  .+....+++.|...|...|++++|..++++.+
T Consensus       320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  378 (490)
T 3n71_A          320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV  378 (490)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3455556555555544321     1  11122345555555555555555555555443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.50  E-value=0.0011  Score=49.05  Aligned_cols=81  Identities=9%  Similarity=0.014  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ...+..+...+.+.|++++|...|++..+.. +.+..++..+...+.+.|++++|.+.+++..+.. +.+...+..+...
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            4566667777777777777777777776653 2355566666666777777777777777766653 2344555555554


Q ss_pred             HHh
Q 008105          197 LCK  199 (577)
Q Consensus       197 ~~~  199 (577)
                      +.+
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.45  E-value=0.0011  Score=52.00  Aligned_cols=79  Identities=9%  Similarity=0.080  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105          135 DASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS  214 (577)
Q Consensus       135 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  214 (577)
                      +|+..|++..+.. +.+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4556666666543 2355566666666666666666666666666554 3345556666666666666666666666554


Q ss_pred             h
Q 008105          215 V  215 (577)
Q Consensus       215 ~  215 (577)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.44  E-value=0.0012  Score=48.87  Aligned_cols=63  Identities=13%  Similarity=0.074  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 008105          153 HFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       153 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  216 (577)
                      ..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344445555555555555555555555443 223444555555555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.38  E-value=0.00094  Score=52.28  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 008105          171 ASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR  250 (577)
Q Consensus       171 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  250 (577)
                      |++.|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++.++
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555555443 2345555555666666666666666666555443 33445555555555555555555555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.32  E-value=0.00053  Score=56.55  Aligned_cols=95  Identities=8%  Similarity=0.002  Sum_probs=68.7

Q ss_pred             HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          128 CSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRI----------EKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       128 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      .+.+.+++|++.+++..+..+ .+...|..+..++.+.+++          ++|+..|++.++.. +.+...|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            345678899999999988753 4888888888888887765          48888888888775 33667777788888


Q ss_pred             HhcC-----------ChHHHHHHHHHHhhCCCCCCHHHHH
Q 008105          198 CKRG-----------QIRSAIALLDEMSVSGCEPDVITYN  226 (577)
Q Consensus       198 ~~~g-----------~~~~A~~~~~~~~~~g~~~~~~~~~  226 (577)
                      ...|           ++++|.+.|++..+.  .|+...|.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~  128 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL  128 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence            7664           677777777776665  45544443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.21  E-value=0.0017  Score=49.32  Aligned_cols=66  Identities=15%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      .++..+..+...|.+.|++++|+..|++.++..+ .+..+|..+..+|.+.|++++|.+.|++.++.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3567788888888888888888888888887753 36667888888888888888888888877643

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.14  E-value=0.001  Score=54.77  Aligned_cols=87  Identities=17%  Similarity=0.084  Sum_probs=61.8

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          163 IRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI----------RSAIALLDEMSVSGCEPDVITYNTILRTM  232 (577)
Q Consensus       163 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~~~~~g~~~~~~~~~~li~~~  232 (577)
                      .+.+.+++|++.++...+.. +.+...|+.+..++...+++          ++|+..|++..+.. +.+..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence            45567888888888888876 55788888888888877765          47777777777654 34566777777777


Q ss_pred             HhCC-----------ChHHHHHHHHHHHHC
Q 008105          233 FDNG-----------KFKQAIGFWKDQLRK  251 (577)
Q Consensus       233 ~~~~-----------~~~~A~~~~~~~~~~  251 (577)
                      ...|           ++++|++.|++.++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            6653           666666666666654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.98  E-value=0.0041  Score=47.18  Aligned_cols=63  Identities=14%  Similarity=0.043  Sum_probs=35.4

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 008105          151 DFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMS  214 (577)
Q Consensus       151 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  214 (577)
                      +...+..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|.+.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455555555666666666666666655543 2234455555555666666666666555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.71  E-value=0.093  Score=56.74  Aligned_cols=152  Identities=17%  Similarity=0.173  Sum_probs=87.2

Q ss_pred             HHhcCChHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          197 LCKRGQIRSAIA-LLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       197 ~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      ....+++++|.+ ++..+      ++......++..+.+.|..++|+++.+.         ..   .-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence            345677777766 44211      1122336666777777777777765421         11   11234566788888


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNE  355 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  355 (577)
                      |.++.+.+      .+...|..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++-+....
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            88775443      3567788888888888888888888877652         23344444556666655555544444


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          356 ASHSPTVFTYNILINGLCKYGLVDRAINSFNQ  387 (577)
Q Consensus       356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  387 (577)
                      .|.      ++....+|.+.|++++|++++.+
T Consensus       736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          736 TGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            331      23333344555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.70  E-value=0.033  Score=52.76  Aligned_cols=73  Identities=12%  Similarity=0.031  Sum_probs=45.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 008105          254 PPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITY  330 (577)
Q Consensus       254 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  330 (577)
                      +.+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++....  .|...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            4455666666555555666666666666666653  55555556666666667777777666666655  4444444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.65  E-value=0.023  Score=53.81  Aligned_cols=72  Identities=10%  Similarity=-0.046  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVF  540 (577)
Q Consensus       465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  540 (577)
                      .+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.+++...  +.|...+|
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~  346 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL  346 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence            455555555555555566666666666666543  4555555555566666666666666666653  24554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.62  E-value=0.0071  Score=59.70  Aligned_cols=87  Identities=9%  Similarity=-0.085  Sum_probs=46.6

Q ss_pred             hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-HHHHHHHH
Q 008105          444 KKGCMEKAMVLYGQMME---NGISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-NSAYRLVI  509 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~~~~~~li  509 (577)
                      ..|++++|+.++++..+   .-+.|+    ..+++.|..+|...|++++|..++++..+     .|. .|+ ..+++.+.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            34566666666666543   111222    23456666666666666666666665543     121 122 23455566


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 008105          510 HGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       510 ~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ..|...|++++|+.++++.++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            666666666666666666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.61  E-value=0.0042  Score=46.80  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=27.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCccHH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          475 WGFCRADQVEEAVDLLKEIGKRGNKMRNS-AYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       475 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ..+...|++++|.+.+++..+... .+.. .+..+..++...|++++|.+.|++.++
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334455555555555555544321 1333 455555555555555555555555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.49  E-value=0.051  Score=58.83  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=20.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPDD----TVFSTIVKKVADDGMTEEA  556 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A  556 (577)
                      ++.|.+.+++++|..+-+..     .|..    .+.......+...|+.+.|
T Consensus       756 ~~~~~~~~~~~~A~~lA~~~-----~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          756 KDLLIKSQRFSEAAFLGSTY-----GLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HHHHHHTTCHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHhccchhHH
Confidence            34444555555555554432     2333    3334444455556664433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.47  E-value=0.017  Score=56.96  Aligned_cols=94  Identities=11%  Similarity=-0.040  Sum_probs=61.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCC-Ccc-H
Q 008105          437 TLIDGLAKKGCMEKAMVLYGQMMENG---ISPD----DITHRTLIWGFCRADQVEEAVDLLKEIGK-----RGN-KMR-N  502 (577)
Q Consensus       437 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~~~-~  502 (577)
                      ..+..+.+.|++++|+.++++..+..   +.|+    ..+++.+..+|...|++++|+.++++...     .|. .|+ .
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33455566777888888877776421   2222    34567777777777888888887777653     221 222 3


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          503 SAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      .+++.+...|...|++++|+.++++..+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4567777777778888888877777776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.39  E-value=0.023  Score=56.07  Aligned_cols=87  Identities=13%  Similarity=-0.035  Sum_probs=50.5

Q ss_pred             hcCChhHHHHHHHHHhh---CCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 008105          409 KEGMLNEALQLLHLLNG---SSCSP----CLITYNTLIDGLAKKGCMEKAMVLYGQMME-----NG-ISPD-DITHRTLI  474 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~---~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li  474 (577)
                      ..|++++|..++++..+   .-+.|    ...+++.|..+|...|++++|+.++++..+     .| -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            34566777776665433   11112    124566666777777777777777776643     22 1122 33566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 008105          475 WGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       475 ~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            777777777777777766655

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.32  E-value=0.032  Score=45.41  Aligned_cols=87  Identities=15%  Similarity=0.239  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCChHHH
Q 008105          447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD---QVEEAVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKVDMA  521 (577)
Q Consensus       447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A  521 (577)
                      ....+.+-|.+..+.|. ++..+...+..++++++   +++++..++++..+.+ .|  +...+-.+.-++.+.|++++|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            45667777777777654 78888888889999988   5669999999988764 23  345555677788999999999


Q ss_pred             HHHHHHHHHCCCCCCH
Q 008105          522 IQVLELMISSRYKPDD  537 (577)
Q Consensus       522 ~~~~~~m~~~~~~p~~  537 (577)
                      .++++.+++  +.|+.
T Consensus        91 ~~y~~~lL~--ieP~n  104 (152)
T 1pc2_A           91 LKYVRGLLQ--TEPQN  104 (152)
T ss_dssp             HHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHh--cCCCC
Confidence            999999985  36653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.28  E-value=0.049  Score=53.73  Aligned_cols=94  Identities=14%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-H
Q 008105          402 TVLGALCKEGMLNEALQLLHLLNGSS---CSPC----LITYNTLIDGLAKKGCMEKAMVLYGQMME-----NG-ISPD-D  467 (577)
Q Consensus       402 ~li~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~  467 (577)
                      ..+..+.+.|++++|+.++++..+..   +.|+    ..+++.+...|...|++++|+.++++..+     .| -.|+ .
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33455666778888888887766431   2222    34677777888888888888888887753     22 1122 3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          468 ITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       468 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      .+++.|...|...|++++|..++++..+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            4577778888888888888888877766

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.20  E-value=0.042  Score=40.78  Aligned_cols=67  Identities=15%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008105          464 SPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISS  531 (577)
Q Consensus       464 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  531 (577)
                      +.|...+..+..++...++   .++|..++++..+.+.. +......+...+.+.|++++|+..|+++.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            3566677777777655444   67888888887775432 5666677777778888888888888888753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.15  E-value=0.046  Score=40.82  Aligned_cols=59  Identities=8%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFH-FCINLIRGLIRIDRIEKASKVLQIMVMSG  182 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~g  182 (577)
                      ....+.+.|++++|+..|+++.+.. +.+.. .+..+..++...|++++|.+.|++.++..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            4567788899999999999888864 23566 78888888888999999999998888775

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.00  E-value=0.051  Score=44.19  Aligned_cols=82  Identities=17%  Similarity=0.111  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105          413 LNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKG---CMEKAMVLYGQMMENGISP--DDITHRTLIWGFCRADQVEEAV  487 (577)
Q Consensus       413 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~  487 (577)
                      ...+.+.|.+..+.+ +++..+...+..++++.+   +.+++..+|++..+.. .|  +...+-.+.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            445555566555555 356666666666777766   5557777777776643 23  2445555666667777777777


Q ss_pred             HHHHHHhhC
Q 008105          488 DLLKEIGKR  496 (577)
Q Consensus       488 ~~~~~m~~~  496 (577)
                      ++++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777777664

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.99  E-value=0.41  Score=37.50  Aligned_cols=139  Identities=13%  Similarity=0.088  Sum_probs=91.2

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105          409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVD  488 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  488 (577)
                      -.|..++..++..+...+.   +..-||-+|--....-+-+-..++++..-+.   -|          ...+|++.....
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHHH
Confidence            3466666666666665533   3445555555444444444444444444321   11          123455555555


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          489 LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       489 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .+-.+-     .+...+...++.+...|+-+.-.+++..+.. +-+|++...-.+..+|.+.|+..+|.+++++.-+.|+
T Consensus        83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            544332     2556777888889999999999999988654 5578899999999999999999999999999988886


Q ss_pred             C
Q 008105          569 F  569 (577)
Q Consensus       569 ~  569 (577)
                      +
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.98  E-value=0.055  Score=40.16  Aligned_cols=67  Identities=9%  Similarity=-0.042  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105          115 NDEKTNNKILQNFCSRGK---LTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSG  182 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g  182 (577)
                      .|+..+..+..++...++   .++|..++++.++..+ -+..+...+...+.+.|++++|+..|+.+++..
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            455666666666654443   5677777777776642 256666666666667777777777777776654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.33  Score=40.50  Aligned_cols=128  Identities=14%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008105          406 ALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE  485 (577)
Q Consensus       406 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  485 (577)
                      ...+.|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+..+         +..+.-.|.-.|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            344567777777766655      2456777777777777777777777766542         3344444555666665


Q ss_pred             HHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008105          486 AVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKL  563 (577)
Q Consensus       486 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (577)
                      -.++-+.....|      -++.....+.-.|+++++.+++.+.   |..|....+      ....|..+.|.++.+++
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence            555544444433      1223333455567777777776554   332322111      12246666666666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.87  E-value=0.07  Score=42.76  Aligned_cols=98  Identities=16%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHH---H---HhcCCHHHHHHHHHHHhhCC
Q 008105          431 CLITYNTLIDGLAKKGCM------EKAMVLYGQMMENGISPDD-ITHRTLIWG---F---CRADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       431 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~-~~~~~li~~---~---~~~g~~~~A~~~~~~m~~~~  497 (577)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+. ..|...+..   |   ...+++++|.++|+.+.+.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            555666666665555666      5666666666543 34431 111111111   1   12345555555555554422


Q ss_pred             CCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          498 NKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       498 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      -+- ...|.....--.+.|+++.|.+++.+.+.
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG  122 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE  122 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence            121 33444444444455555556555555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.63  E-value=0.16  Score=46.14  Aligned_cols=108  Identities=10%  Similarity=0.110  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHh-cCCh
Q 008105          448 MEKAMVLYGQMMENGISPD---DITHRTLIWGFCR-----ADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCK-SKKV  518 (577)
Q Consensus       448 ~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~  518 (577)
                      ...|...+++.++.  .|+   ...|..+...|..     -|+.++|.+.|++..+.+..-+..++....+.++. .|+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777777763  465   4567777777877     48888888888888875432235566667777777 4888


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          519 DMAIQVLELMISSRYK--PDDTVFSTIVKKVADDGMTEEAYKLWQKLIE  565 (577)
Q Consensus       519 ~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (577)
                      ++|.+.+++.+.....  |+....+.+        .-++|..++++.-+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d  297 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD  297 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence            8888888888876554  554444333        33566666655443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.62  E-value=0.12  Score=39.18  Aligned_cols=66  Identities=8%  Similarity=0.014  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRN------QIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      +..-+-.|...+.+.|++..|...|+.+.+.-      ..+...++..+..++.+.|+++.|...++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            34455677777777777777777777766541      1234455666666666667777776666666654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.51  E-value=0.083  Score=40.13  Aligned_cols=71  Identities=7%  Similarity=-0.007  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105          465 PDDITHRTLIWGFCRADQVEEAVDLLKEIGKR------GNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD  537 (577)
Q Consensus       465 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  537 (577)
                      .+..-+..|...+.+.|+++.|...|+...+.      .-.+....+..+..++.+.|++++|..+++++.+.  .|+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~   79 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH   79 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence            35556678888889999999999999887652      11245677888899999999999999999998853  5553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.35  E-value=0.34  Score=38.87  Aligned_cols=102  Identities=12%  Similarity=0.012  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHcCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHh
Q 008105          114 ENDEKTNNKILQNFCSRGKL------TDASKLIDIMARRNQIPDFH-FCINLIRGL------IRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~~~~~~~~~~~~-~~~~li~~~------~~~g~~~~A~~~~~~~~~  180 (577)
                      +.|..+|-..+...-+.|++      ++.+++|++.... ++|+.. .|...+..+      ...++.++|+++|+.+++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45778888888888888888      7888888888775 455421 112222111      123556666666666654


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 008105          181 SGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSG  217 (577)
Q Consensus       181 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g  217 (577)
                      .+-.- ...|....+.-.++|++..|.+++.+....+
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            42222 4555555555555666666666666655554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.58  Score=39.02  Aligned_cols=101  Identities=10%  Similarity=0.135  Sum_probs=56.8

Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIAR  275 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  275 (577)
                      .....|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+...         +..+.-.|.-.|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            344566666666665554      2556666666666666776666666665421         3334444555666655


Q ss_pred             HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          276 AIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINN  317 (577)
Q Consensus       276 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  317 (577)
                      -.++-+....+|      -++.....+.-.|+++++.+++.+
T Consensus        79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            555444444332      244444555566666666666643

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.94  E-value=0.0002  Score=69.23  Aligned_cols=196  Identities=12%  Similarity=0.182  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      ..|+..|..+|....+.|++++-++.+.-..+.  ..++.+=+.|+-+|++.++..+-.+++.       .|+..-...+
T Consensus        80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~V  150 (624)
T 3lvg_A           80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV  150 (624)
T ss_dssp             CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHH
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHH
Confidence            345555566666666666666655555433332  2233344455556666555443222211       2444444455


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI  273 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  273 (577)
                      .+-|...|.++.|.-+|..+..         |..|...+.+.|++..|.+.-++      .-++.||-.+-.+|...+.+
T Consensus       151 GDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Ef  215 (624)
T 3lvg_A          151 GDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEF  215 (624)
T ss_dssp             HHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTT
T ss_pred             HHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHH
Confidence            5555556666655555544431         11222223333333333222111      12445555555556555555


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHc
Q 008105          274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGS  339 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  339 (577)
                      .-|.-.--.+.-.   ||  -...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++
T Consensus       216 rLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          216 RLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             TTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred             HHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence            5444333222211   11  12233444555555555555555544221 2334445555444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.53  E-value=0.24  Score=38.67  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCc--cHHHHHHHHHHHHhcCCh
Q 008105          444 KKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEE---AVDLLKEIGKRGNKM--RNSAYRLVIHGLCKSKKV  518 (577)
Q Consensus       444 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~  518 (577)
                      .......+.+-|.+....|. ++..+-..+.+++.++.+...   ++.++++..+.+ .|  .....-.+.-++.+.|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence            33344555555555554442 566666666677777665544   677777766543 12  233344455567777777


Q ss_pred             HHHHHHHHHHHH
Q 008105          519 DMAIQVLELMIS  530 (577)
Q Consensus       519 ~~A~~~~~~m~~  530 (577)
                      ++|.+.++.+++
T Consensus        91 ~~A~~~~~~lL~  102 (126)
T 1nzn_A           91 EKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.50  E-value=1.4  Score=34.67  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008105          328 ITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKN  392 (577)
Q Consensus       328 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  392 (577)
                      ......++.+...|+.++..+++..+.. +.+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3344445555666666666666666433 234556666666666666666666666666666655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.11  E-value=0.51  Score=42.91  Aligned_cols=112  Identities=11%  Similarity=-0.101  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHH-Hhc--CC------hhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHh
Q 008105          116 DEKTNNKILQNF-CSR--GK------LTDASKLIDIMARRNQIP-DFHFCINLIRGLIR-----IDRIEKASKVLQIMVM  180 (577)
Q Consensus       116 ~~~~~~~li~~~-~~~--g~------~~~A~~l~~~~~~~~~~~-~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~  180 (577)
                      ....|..++.+- ...  |.      ...|..++++.++....- +-..|..+...|.+     .|+.++|.+.|++.++
T Consensus       153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~  232 (301)
T 3u64_A          153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR  232 (301)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence            345666665533 332  33      356777777777753221 24567778777877     4888888888888888


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCC--CCHHHHHH
Q 008105          181 SGGVPDTITYNMMVGGLCKR-GQIRSAIALLDEMSVSGCE--PDVITYNT  227 (577)
Q Consensus       181 ~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~--~~~~~~~~  227 (577)
                      .+..-+..++....+.+++. |+.+++.+.+++.......  |+....+.
T Consensus       233 LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          233 YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            76434577777778888774 8888888888888876544  55444443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.93  E-value=0.27  Score=38.41  Aligned_cols=85  Identities=13%  Similarity=0.031  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008105          483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDM---AIQVLELMISSRYKP--DDTVFSTIVKKVADDGMTEEAY  557 (577)
Q Consensus       483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~  557 (577)
                      ...+.+-|.+....|. ++..+-..+..++.++.+..+   ++.+++...+.+ .|  .....-.|.-++.+.|++++|+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            3444444444444332 444444445666666665554   666666655432 12  1223334445666666666666


Q ss_pred             HHHHHHHHcCCC
Q 008105          558 KLWQKLIEWKVF  569 (577)
Q Consensus       558 ~~~~~~~~~~~~  569 (577)
                      ++++.+++..|.
T Consensus        95 ~~~~~lL~~eP~  106 (126)
T 1nzn_A           95 KYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCC
Confidence            666666664443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.90  E-value=0.0028  Score=61.43  Aligned_cols=372  Identities=12%  Similarity=0.076  Sum_probs=169.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGG-----------  183 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-----------  183 (577)
                      .++..=+.|+-+|++.+++.+-.+++       -.||..-...+..-|...|.++.|.-+|..+....-           
T Consensus       114 ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y  186 (624)
T 3lvg_A          114 RESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY  186 (624)
T ss_dssp             CSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred             cccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            34455578999999999988765544       247777788899999999999999988887632110           


Q ss_pred             ---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 008105          184 ---------VPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCP  254 (577)
Q Consensus       184 ---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~  254 (577)
                               ..++.||-.+-.+|...+.+.-|...=-.+.-   .+  .-...++..|-..|.+++-+.+++.-+.. -.
T Consensus       187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglgl-Er  260 (624)
T 3lvg_A          187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGL-ER  260 (624)
T ss_dssp             GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TT
T ss_pred             HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cc
Confidence                     12333444444444444444444333222221   11  11223344444555555555555544321 12


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 008105          255 PYLITYTILIEQVCKQCGIARAIEVLDDMAI-EGCSP------DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNS  327 (577)
Q Consensus       255 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  327 (577)
                      .....|+-|.-.|++- +.++-.+-++..-. .+++.      ....|.-++-.|++-.+++.|...   |.++  .|+.
T Consensus       261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~A  334 (624)
T 3lvg_A          261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDA  334 (624)
T ss_dssp             CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHH
T ss_pred             hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--Chhh
Confidence            3444555555555443 22222221111110 01110      123344444445544444444321   1111  0000


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCCCH
Q 008105          328 ITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK----------NCQPDI  397 (577)
Q Consensus       328 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~~~~  397 (577)
                      .-...+-+...+..+.+---+...-..+.  .|  ...+-|+..+...=+..++.++|++.-..          .-..+.
T Consensus       335 w~h~~Fkdii~KVaN~EiyYKAi~FYL~e--~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~  410 (624)
T 3lvg_A          335 WKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK  410 (624)
T ss_dssp             CCGGGGTTTGGGCSCSHHHHHHHHHHTTS--CC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCH
T ss_pred             ccHHHHHHHHHHcchHHHHHHHHHHHHHh--Ch--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHH
Confidence            00000111111111211111111111111  01  11233333333333334444444332110          112244


Q ss_pred             HHHHHHHHHHHhcCChhHHHHH------------HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008105          398 VTYNTVLGALCKEGMLNEALQL------------LHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISP  465 (577)
Q Consensus       398 ~~~~~li~~~~~~g~~~~A~~~------------~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  465 (577)
                      .+-.++-+.|....+++.-...            -+++.+..   -...-..-...|.+.++|+++.++.++        
T Consensus       411 aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~Kk--------  479 (624)
T 3lvg_A          411 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKK--------  479 (624)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSST--------
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHh--------
Confidence            5555666667777776554322            22222221   122223334456667777777655332        


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHH
Q 008105          466 DDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQV  524 (577)
Q Consensus       466 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  524 (577)
                       ...|.-.|.....+|+.+-|.++++-..+.|   +...|...+..|...=+++-++++
T Consensus       480 -DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          480 -DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             -TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             -cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence             1122333445566777777777777776654   335566666666655566665554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.30  E-value=10  Score=40.71  Aligned_cols=148  Identities=12%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHhcCC
Q 008105          409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLI--DGLAKKGCMEKAMVLYGQMMENGISPDDIT-H---RTLIWGFCRADQ  482 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~---~~li~~~~~~g~  482 (577)
                      -.|+-+....+++.+.+..   +......+.  -++...|+.+.+..+.+.+...   .+... |   ..+..+|+..|+
T Consensus       502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred             ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence            4455555566666554432   222222233  3333566767777776766653   23222 2   223345556677


Q ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 008105          483 VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMT-EEAYKLWQ  561 (577)
Q Consensus       483 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~  561 (577)
                      .....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .+|...+.
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            666666776666531 1222222222223334555555555555444422 23322222233333333332 44555555


Q ss_pred             HHH
Q 008105          562 KLI  564 (577)
Q Consensus       562 ~~~  564 (577)
                      .+.
T Consensus       654 ~L~  656 (963)
T 4ady_A          654 PLT  656 (963)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.93  E-value=20  Score=38.65  Aligned_cols=153  Identities=14%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcC
Q 008105          371 GLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA--LCKEGMLNEALQLLHLLNGSSCSPCLITY--NTLIDGLAKKG  446 (577)
Q Consensus       371 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g  446 (577)
                      .+...|+.+....++..+.+..   +......+..+  +...|+.+.+..+.+.+.... .|....-  .++.-+|+..|
T Consensus       499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG  574 (963)
T 4ady_A          499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG  574 (963)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred             hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence            3445566666666666555431   22222333333  335567777776666665532 2222111  12334555666


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCCh-HHHHHHH
Q 008105          447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKV-DMAIQVL  525 (577)
Q Consensus       447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~  525 (577)
                      +.....+++..+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+
T Consensus       575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L  652 (963)
T 4ady_A          575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL  652 (963)
T ss_dssp             CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            7666666777666531 1122222223333444555555556655444432 33333333333333334433 4566666


Q ss_pred             HHHH
Q 008105          526 ELMI  529 (577)
Q Consensus       526 ~~m~  529 (577)
                      ..+.
T Consensus       653 ~~L~  656 (963)
T 4ady_A          653 DPLT  656 (963)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6665

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.24  E-value=15  Score=36.09  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHHc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          271 CGIARAIEVLDDMAIE-----GCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLL  319 (577)
Q Consensus       271 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  319 (577)
                      |+++.|.+.+..+.+.     +..........++..|.+.++++...+.+..+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls   83 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS   83 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            5666777666555442     122234445566667777777776666555444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.93  E-value=12  Score=34.53  Aligned_cols=127  Identities=13%  Similarity=0.043  Sum_probs=72.9

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ++.-...|++=+|.+.++.+..               -|.+++++++|++++..-.               ..+.+.|+.
T Consensus        20 l~~~I~~G~yYEAhQ~~Rtl~~---------------Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~   69 (312)
T 2wpv_A           20 FENKIKAGDYYEAHQTLRTIAN---------------RYVRSKSYEHAIELISQGA---------------LSFLKAKQG   69 (312)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHH---------------HHHHHTTCH
T ss_pred             HHHHhhccChHHHHHHHHHHHH---------------HHHHhcCHHHHHHHHHHHH---------------HHHHHCCCc
Confidence            3455566777777766655443               4777888888888765542               234455665


Q ss_pred             HHHHHH----HHHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHHcCC
Q 008105          204 RSAIAL----LDEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLR----KG--CPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       204 ~~A~~~----~~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~  272 (577)
                      ..|-++    .+-..+.+++++......++..+..-..-+ .=.++.+++++    .|  ..-++..+..+...|.+.++
T Consensus        70 ~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~  149 (312)
T 2wpv_A           70 GSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF  149 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC
Confidence            555443    444455666777776666666654422111 11222333322    21  12366677777777788888


Q ss_pred             HHHHHHHH
Q 008105          273 IARAIEVL  280 (577)
Q Consensus       273 ~~~A~~~~  280 (577)
                      +.+|..-|
T Consensus       150 ~~~A~~H~  157 (312)
T 2wpv_A          150 VYEAERYF  157 (312)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.75  E-value=3.7  Score=32.18  Aligned_cols=74  Identities=16%  Similarity=0.276  Sum_probs=48.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105          462 GISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD  537 (577)
Q Consensus       462 g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  537 (577)
                      +-.|+..+--.+.+++.++.+   ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++  +.|+-
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N  111 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN  111 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence            335666776677777777665   346777777776654222344555566677888888888888888774  45653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.68  E-value=5.1  Score=31.36  Aligned_cols=66  Identities=11%  Similarity=0.016  Sum_probs=28.4

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          430 PCLITYNTLIDGLAKKGC---MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      |+..+--.+.-++.+..+   ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            333333333444444332   233445555544432111233344444455555555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.64  E-value=6.6  Score=31.19  Aligned_cols=73  Identities=15%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105          463 ISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDD  537 (577)
Q Consensus       463 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  537 (577)
                      -.|+..+-..+.+++.++.+   ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+++.  .|+-
T Consensus        35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n  110 (144)
T 1y8m_A           35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN  110 (144)
T ss_dssp             TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred             CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence            35777777778888888765   4568888888877543323444555777888999999999999988853  5653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.28  E-value=2.1  Score=44.98  Aligned_cols=63  Identities=11%  Similarity=0.078  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH
Q 008105          429 SPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRAD---------QVEEAVDLLKEI  493 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m  493 (577)
                      +.+..-|..|.....+.+++++|.+.|+.....  +-+...+..|+..|.+.+         +.+..+.+.-++
T Consensus       610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl  681 (754)
T 4gns_B          610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKK  681 (754)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHH
Confidence            445566777777777778888888888777764  357777778888777665         555555554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.11  E-value=5.6  Score=38.30  Aligned_cols=69  Identities=10%  Similarity=0.069  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 008105          472 TLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS-----SRYKPDDTVFS  541 (577)
Q Consensus       472 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~  541 (577)
                      .++..+...|+.+++...+..+.... +.+...|..++.++.+.|+..+|.+.|++..+     .|+.|++.+-.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            34455556666666666666655432 23555666666666666666666666665543     36666655543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=89.04  E-value=3.1  Score=30.66  Aligned_cols=63  Identities=8%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +.=+..+-++.+...++.|.+......+++|.+.+++.-|.++++-...+ ..+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34456666666666777788888888888888888888888888776642 2333445666553

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=88.63  E-value=1.8  Score=41.77  Aligned_cols=130  Identities=12%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             CCCCHHHHHHHHHHHH---hcCChhhHHHHHHHHHHc--CCC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCC
Q 008105          113 VENDEKTNNKILQNFC---SRGKLTDASKLIDIMARR--NQI-PDFHFCINLIRGLIRIDRI-EKASKVLQIMVMSGGVP  185 (577)
Q Consensus       113 ~~~~~~~~~~li~~~~---~~g~~~~A~~l~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~  185 (577)
                      ..-|...|..++..-.   ..|+.+.|...++++...  |.. ++...           ..+ .....-+++..      
T Consensus       108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~------  170 (388)
T 2ff4_A          108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDK------  170 (388)
T ss_dssp             GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHH------
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHH------
Confidence            4567777877775543   468999999999988764  221 11110           111 11112222221      


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 008105          186 DTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-----KGCPPYLITY  260 (577)
Q Consensus       186 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~  260 (577)
                       ......++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|+.+.+     .|+.|...+-
T Consensus       171 -~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          171 -VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence             1234556777788888888888888877653 55778888888888888888888888887654     4888887765


Q ss_pred             H
Q 008105          261 T  261 (577)
Q Consensus       261 ~  261 (577)
                      .
T Consensus       249 ~  249 (388)
T 2ff4_A          249 A  249 (388)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.24  E-value=8.4  Score=30.59  Aligned_cols=68  Identities=10%  Similarity=0.026  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          429 SPCLITYNTLIDGLAKKGC---MEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       429 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      .|+..+--.+..++.++.+   ..+++.++++..+.+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4555555555555555553   3356666666665331112334445556666777777777777666664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.90  E-value=14  Score=41.44  Aligned_cols=88  Identities=15%  Similarity=0.185  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 008105          257 LITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDI----VTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNT  332 (577)
Q Consensus       257 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  332 (577)
                      ..-|..++..+.+.+.++.+.++-........+.+.    ..|..+.+.+...|++++|...+-.+.....  -......
T Consensus       899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~  976 (1139)
T 4fhn_B          899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD  976 (1139)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence            345666666777777777777666655543211111    2466677777777888877777777665532  3455666


Q ss_pred             HHHHHHccCCHHHH
Q 008105          333 LLHSLGSRGCWDAV  346 (577)
Q Consensus       333 ll~~~~~~g~~~~a  346 (577)
                      ++..++..|+.+..
T Consensus       977 LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          977 FVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHHHHCCHHHH
T ss_pred             HHHHHHhCCChhhh
Confidence            66666666655544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=87.10  E-value=5  Score=32.85  Aligned_cols=63  Identities=8%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRN-QIPDF-------HFCINLIRGLIRIDRIEKASKVLQIMVM  180 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~  180 (577)
                      .++-.-++.+...|.++.|+-+.+.+.... ..|+.       .++..+..++...+++.+|...|++.++
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            345566888899999999999888765432 12332       2456677888899999999999998754

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=86.97  E-value=6.4  Score=29.04  Aligned_cols=47  Identities=11%  Similarity=0.114  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          449 EKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       449 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      =+..+-++.+....+.|++....+.+.+|.+-.++.-|.++|+-+..
T Consensus        27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555555555543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.81  E-value=25  Score=34.46  Aligned_cols=257  Identities=14%  Similarity=0.099  Sum_probs=141.2

Q ss_pred             cCCHHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc
Q 008105          305 QGKYDDAVLVINNLLSR-----GMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGL----CKY  375 (577)
Q Consensus       305 ~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~  375 (577)
                      .|++++|++.+-.+.+.     +..........++..|...++++...+.+..+...... .......+++.+    ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence            36788888877666542     23445667788889999999999888877766543221 222333444333    223


Q ss_pred             CCHHHHH--HHHHHHHH--CC-CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCC---HHHHHHHHHHH
Q 008105          376 GLVDRAI--NSFNQMVS--KN-CQP---DIVTYNTVLGALCKEGMLNEALQLLHLLNGS--SCSPC---LITYNTLIDGL  442 (577)
Q Consensus       376 g~~~~A~--~~~~~m~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~  442 (577)
                      ...+...  .+.+....  .| +..   .......|...+...|++.+|.+++..+...  +..+.   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            3322211  11111111  01 111   1123355677788888999998888877532  21111   23566667788


Q ss_pred             HhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCccHHH----HHHHHHH
Q 008105          443 AKKGCMEKAMVLYGQMME----NGISPD--DITHRTLIWGFCRADQVEEAVDLLKEIGKR-GNKMRNSA----YRLVIHG  511 (577)
Q Consensus       443 ~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~----~~~li~~  511 (577)
                      ...+++.+|..++.++..    ....|+  ...+...+..+...+++.+|.+.|.++... ...-+...    ...++.+
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~  267 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF  267 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            888888888888887642    221222  234566667777788888888888777652 11112222    2223333


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 008105          512 LCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADD--GMTEEAYKLWQK  562 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~  562 (577)
                      ..-.+....-..+.........-++...+..++++|...  .+++.+.+.++.
T Consensus       268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~  320 (445)
T 4b4t_P          268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP  320 (445)
T ss_dssp             HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred             HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence            333333333334444333333334456677777777553  345555554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.21  E-value=4.4  Score=42.58  Aligned_cols=86  Identities=16%  Similarity=0.071  Sum_probs=60.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHH--CC
Q 008105          464 SPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSK---------KVDMAIQVLELMIS--SR  532 (577)
Q Consensus       464 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~--~~  532 (577)
                      +-+..-|..|.....+.+++++|.+.|+.....  +-+...+..|+..|...+         +.+..+.+.-++..  ..
T Consensus       610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R  687 (754)
T 4gns_B          610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR  687 (754)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence            446667888888888999999999999888764  356778888999998876         66766666655542  11


Q ss_pred             --CCCCHHHHHHHHHHHHhcC
Q 008105          533 --YKPDDTVFSTIVKKVADDG  551 (577)
Q Consensus       533 --~~p~~~~~~~l~~~~~~~g  551 (577)
                        ...+......|.+.+.+.|
T Consensus       688 wY~efs~~l~~~l~kLi~~~G  708 (754)
T 4gns_B          688 YYNYCQIFNLQLLEKLCNELG  708 (754)
T ss_dssp             TTBCCCHHHHHHHHHHHHHHC
T ss_pred             cccccCHHHHHHHHHHHHHhC
Confidence              1334555566666665555

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.88  E-value=7.9  Score=43.42  Aligned_cols=193  Identities=15%  Similarity=0.084  Sum_probs=121.4

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-------------
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS----G-------------  182 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g-------------  182 (577)
                      ...++..+.+.+.++.|.++....     +.+....-.+..++...|++++|.+.|++....    +             
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            345777888888888887755432     234455555667888999999999999775211    0             


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 008105          183 -----GVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPD----VITYNTILRTMFDNGKFKQAIGFWKDQLRKGC  253 (577)
Q Consensus       183 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~  253 (577)
                           ...-...|..++..+.+.|.++.+.++-....+..-+.+    ...|..+.+.+...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                 011123577888899999999998887776654321222    12578889999999999999988887766533


Q ss_pred             CCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 008105          254 PPYLITYTILIEQVCKQCG------------IARAIEVLDDMAIEG--CSPDIVTYNSLVNFSCKQGKYDDAVL-VINNL  318 (577)
Q Consensus       254 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m  318 (577)
                        -......|+...|..|.            .++..+++..-.+..  ....+.-|..|=..+...|++..|-. +|+.+
T Consensus       970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence              34566667776676554            344555554332211  11112335555555667777766554 44444


Q ss_pred             h
Q 008105          319 L  319 (577)
Q Consensus       319 ~  319 (577)
                      .
T Consensus      1048 ~ 1048 (1139)
T 4fhn_B         1048 S 1048 (1139)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.17  E-value=27  Score=32.48  Aligned_cols=127  Identities=17%  Similarity=0.070  Sum_probs=69.6

Q ss_pred             HHHHHhcCCh---hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          124 LQNFCSRGKL---TDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       124 i~~~~~~g~~---~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      ++.-...|++   =+|.+.++.+.               .-|.+.+++++|++++..-.               ..+.+.
T Consensus        19 l~~~I~~G~y~~~YEAHQ~~RTi~---------------~Ry~~~k~y~eAidLL~~GA---------------~~ll~~   68 (336)
T 3lpz_A           19 LQRRIAEGQPEEQYEAAQETRLVA---------------ARYSKQGNWAAAVDILASVS---------------QTLLRS   68 (336)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHH---------------HHHHHT
T ss_pred             HHHHHhCCCCccccHHHHHHHHHH---------------HHHHhhcCHHHHHHHHHHHH---------------HHHHHC
Confidence            3455666777   56666555443               34778888888888765432               234455


Q ss_pred             CChHHHHHHH----HHHhhCCCCCCHHHHHHHHHHHHhCCChH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHH
Q 008105          201 GQIRSAIALL----DEMSVSGCEPDVITYNTILRTMFDNGKFK-QAIGFWKDQLR----KG--CPPYLITYTILIEQVCK  269 (577)
Q Consensus       201 g~~~~A~~~~----~~~~~~g~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~  269 (577)
                      |+...|-++-    +-+.+.++++|......++..+.....-+ +=..+.+++++    .|  ..-|+.....+...|.+
T Consensus        69 ~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~  148 (336)
T 3lpz_A           69 GQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVE  148 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc
Confidence            6655544433    44445566777766666666655443211 11112222221    11  22355666666677777


Q ss_pred             cCCHHHHHHHH
Q 008105          270 QCGIARAIEVL  280 (577)
Q Consensus       270 ~g~~~~A~~~~  280 (577)
                      .+++.+|..-|
T Consensus       149 e~~~~~Ae~H~  159 (336)
T 3lpz_A          149 EGEFEAAEKHL  159 (336)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            77777766655

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=83.57  E-value=7.4  Score=30.42  Aligned_cols=63  Identities=8%  Similarity=0.122  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +.-+..+-++.+...++.|++......+++|.+.+++..|.++|+-...+ ..+...+|..+++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            34455555566666677777777777888888888888888887776642 3344555666553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.43  E-value=11  Score=29.48  Aligned_cols=44  Identities=11%  Similarity=0.141  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008105          451 AMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIG  494 (577)
Q Consensus       451 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  494 (577)
                      ..+-++.+...++.|++......+.+|-+-+++.-|.++|+-+.
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333444444444555555555555555555555555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	577
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-05
 Identities = 30/295 (10%), Positives = 73/295 (24%), Gaps = 12/295 (4%)

Query: 274 ARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTL 333
             A              +      L +   +  + D +       +     P      + 
Sbjct: 16  EAAERHCMQ-LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSN 72

Query: 334 LHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNC 393
           L ++                        +  Y  L   L   G ++ A+ ++   +  N 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 394 QPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMV 453
               V  +          +       L  +         + ++ L      +G +  A+ 
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA--VAWSNLGCVFNAQGEIWLAIH 190

Query: 454 LYGQMMENGISPDDI-THRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGL 512
            + + +   + P+ +  +  L      A   + AV                   L     
Sbjct: 191 HFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV-Y 247

Query: 513 CKSKKVDMAIQVLELMISSRYKPDDT-VFSTIVKKVADDGMTEEAYKLWQKLIEW 566
            +   +D+AI      I    +P     +  +   + + G   EA   +   +  
Sbjct: 248 YEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 44/250 (17%)

Query: 245 WKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK 304
              +  +  P + + ++ L      Q  I  AI    + A+      +  Y +L N   +
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH-HFEKAVTLDPNFLDAYINLGNVLKE 215

Query: 305 QGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFT 364
              +D AV                              +     +               
Sbjct: 216 ARIFDRAV----------------------------AAYLRALSLSPNHAVV-------- 239

Query: 365 YNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLG-ALCKEGMLNEALQLLHLL 423
           +  L     + GL+D AI+++ + +     P        L  AL ++G + EA    +  
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 424 NGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDI-THRTLIWGFCRADQ 482
               C     + N L +   ++G +E+A+ LY + +E  + P+    H  L     +  +
Sbjct: 298 L-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGK 354

Query: 483 VEEAVDLLKE 492
           ++EA+   KE
Sbjct: 355 LQEALMHYKE 364

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	577
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.24
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.2
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.16
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.01
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.96
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.54
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.51
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.46
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.42
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.37
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.33
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.28
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.28
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.21
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.11
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.05
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.01
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.95
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.9
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.8
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.75
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.69
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.68
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.65
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.62
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.59
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.58
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.5
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.23
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.08
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.67
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.56
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.52
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.33
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.39
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.84
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.48
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.26
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	91.65
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.4
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	86.72

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-21  Score=187.93  Aligned_cols=383  Identities=13%  Similarity=0.081  Sum_probs=219.1

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ  202 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  202 (577)
                      +...+.+.|++++|++.++++.+.. +-+..++..+...+.+.|++++|.+.|+++++.. +.+..+|..+...|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            3444555566666666666555543 2244555555555555555555555555555443 2234455555555555555


Q ss_pred             hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008105          203 IRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDD  282 (577)
Q Consensus       203 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  282 (577)
                      +++|.+.+....+.. +.+...+......                                   ....+....+......
T Consensus        83 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~  126 (388)
T d1w3ba_          83 LQEAIEHYRHALRLK-PDFIDGYINLAAA-----------------------------------LVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----------------------------------HHHHSCSSHHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccccccc-----------------------------------cccccccccccccccc
Confidence            555555555554432 2223333333333                                   3333333333333333


Q ss_pred             HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008105          283 MAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTV  362 (577)
Q Consensus       283 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~  362 (577)
                      ..... .................+....+...+....... +-+...+..+...+...|+++.|...++...+.. +.+.
T Consensus       127 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~  203 (388)
T d1w3ba_         127 ALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFL  203 (388)
T ss_dssp             HHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             ccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccH
Confidence            32221 1222333333444444555555555555444432 1133445555555566666666666666555543 2345


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          363 FTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGL  442 (577)
Q Consensus       363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~  442 (577)
                      ..+..+...+...|++++|+..+++....+ +.+...+..+...+.+.|++++|...|++..+.. +.+..++..+...+
T Consensus       204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  281 (388)
T d1w3ba_         204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            556666666666667777776666666553 4455566666666677777777777777666553 44556677777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHH
Q 008105          443 AKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAI  522 (577)
Q Consensus       443 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~  522 (577)
                      ...|++++|.+.++...... +.+...+..+...+...|++++|.+.|++..+... -+..++..+..++.+.|++++|+
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777776542 44566777777777777888888888877766432 24566777777888888888888


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 008105          523 QVLELMISSRYKP-DDTVFSTIVKKVADDGM  552 (577)
Q Consensus       523 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~  552 (577)
                      +.|++.++  +.| +...|..+..+|.+.|+
T Consensus       360 ~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         360 MHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            88888774  345 36677777777777664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-21  Score=189.31  Aligned_cols=356  Identities=14%  Similarity=0.076  Sum_probs=231.6

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      .++.++..+...|.+.|++++|+..|+++++..+ .+..++..+...|.+.|++++|++.+....+.. +.+...+....
T Consensus        31 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~  108 (388)
T d1w3ba_          31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLA  108 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccc
Confidence            4678899999999999999999999999998753 377889999999999999999999999999876 44555556666


Q ss_pred             HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008105          195 GGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIA  274 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  274 (577)
                      ......+....+........... .................+....+...+....... +.+...+..+...+...|+++
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  186 (388)
T d1w3ba_         109 AALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW  186 (388)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred             ccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHH
Confidence            66666677666666665555443 3445555556666677777777777777766553 445666777777777777888


Q ss_pred             HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 008105          275 RAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMN  354 (577)
Q Consensus       275 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  354 (577)
                      +|...+++..... +.+...|..+...+...|++++|...+++..... ..+...+..+...+.+.|++++|...+++..
T Consensus       187 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  264 (388)
T d1w3ba_         187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI  264 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8887777776653 2245566667777777777777777776666543 2244455555666666666666666666665


Q ss_pred             hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHH
Q 008105          355 EASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLIT  434 (577)
Q Consensus       355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~  434 (577)
                      +.. +.+..++..+...+.+.|++++|++.++...... +.+...+..+...+.+.|++++|...+++..+.. +.+..+
T Consensus       265 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  341 (388)
T d1w3ba_         265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA  341 (388)
T ss_dssp             HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            543 2344555566666666666666666666555542 4445555555555555555555555555555432 233444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISP-DDITHRTLIWGFCRAD  481 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g  481 (577)
                      +..+...|.+.|++++|...|++.++.  .| +...|..+..+|.+.|
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            555555555555555555555555542  23 2444555555554444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.9e-12  Score=121.34  Aligned_cols=244  Identities=13%  Similarity=0.007  Sum_probs=161.3

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          122 KILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       122 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      .....+.+.|++++|+..|+++++..+ .+..+|..+..++...|++++|...|++..+.. +-+...|..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            456778888888888888888888643 367778888888888888888888888887765 346677777888888888


Q ss_pred             ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008105          202 QIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLD  281 (577)
Q Consensus       202 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  281 (577)
                      ++++|.+.+++.....  |+.............                   ..+.......+..+...+...+|.+.|.
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            8888888888877542  321111000000000                   0000111111223344455667777777


Q ss_pred             HHHHcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008105          282 DMAIEGC-SPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHSP  360 (577)
Q Consensus       282 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~  360 (577)
                      +...... ..+...+..+...+...|++++|+..+++...... -+..+|..+...+...|++++|.+.++...+.. +.
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence            6665421 23456677777778888888888888888776532 245677777777888888888888888777653 23


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          361 TVFTYNILINGLCKYGLVDRAINSFNQMVS  390 (577)
Q Consensus       361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  390 (577)
                      +..+|..+..+|.+.|++++|+..|++.++
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566777788888888888888888877765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.5e-12  Score=120.84  Aligned_cols=243  Identities=14%  Similarity=0.052  Sum_probs=136.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008105          193 MVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG  272 (577)
Q Consensus       193 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  272 (577)
                      ....+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|...|.+.++.. |-+...+..+...+...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            4555667777777777777777654 3456677777777777777777777777776653 4456666666677777777


Q ss_pred             HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 008105          273 IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDI  352 (577)
Q Consensus       273 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  352 (577)
                      +++|.+.++++....  |+..............                   .+.......+..+...+.+.++...+..
T Consensus       103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGG-------------------AGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhc--cchHHHHHhhhhhhhh-------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            777777777766542  2211100000000000                   0000000111122233444555555555


Q ss_pred             HHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 008105          353 MNEASH-SPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPC  431 (577)
Q Consensus       353 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~  431 (577)
                      ..+... ..+...+..+...+...|++++|+..|++..... +.+...|..+...+.+.|++++|.+.++...+.. +-+
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~  239 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY  239 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence            544321 2344556666666666666777766666666543 3345566666666666666666666666655543 334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          432 LITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       432 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      ...|..+..+|.+.|++++|+..|++.++
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55566666666666666666666666554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-09  Score=100.81  Aligned_cols=216  Identities=7%  Similarity=0.009  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRID-RIEKASKVLQIMVMSGGVPDTITYNMMVG  195 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~  195 (577)
                      ..+++.+...+.+.+.+++|+++++.+++.++ -+..+|+....++...| ++++|++.++..++.. +-+..+|+.+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            45778888889999999999999999999853 37788899988888876 5899999999998876 557889999999


Q ss_pred             HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---
Q 008105          196 GLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCG---  272 (577)
Q Consensus       196 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---  272 (577)
                      .+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++++++.. +.+...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999875 5679999999999999999999999999999874 5577888887777766655   


Q ss_pred             ---HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 008105          273 ---IARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEP-NSITYNTLLHSLG  338 (577)
Q Consensus       273 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~  338 (577)
                         +++|.+.+....... +.+...|+.+...+.. ...+++.+.++...+....+ +...+..+...|.
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence               578888888887764 3466777777665544 44577777777776543332 3344555555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.8e-08  Score=95.65  Aligned_cols=270  Identities=10%  Similarity=-0.023  Sum_probs=184.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPD----FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-PD----TITYN  191 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~  191 (577)
                      ......+...|++++|++++++.++.....+    ..++..+...+...|++++|.+.|++..+.... ++    ...+.
T Consensus        16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            3346778899999999999999988643222    235667788889999999999999988753211 11    23456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhC----CCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCCCHHHH
Q 008105          192 MMVGGLCKRGQIRSAIALLDEMSVS----GCEP---DVITYNTILRTMFDNGKFKQAIGFWKDQLRKG----CPPYLITY  260 (577)
Q Consensus       192 ~li~~~~~~g~~~~A~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~  260 (577)
                      .+...+...|++..+...+.+....    +...   ....+..+...+...|+++.+...+.......    ......++
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            6677788899999999888776531    1111   12345566778888999999999888877642    22234455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHH
Q 008105          261 TILIEQVCKQCGIARAIEVLDDMAIEG--CSP----DIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN---SITYN  331 (577)
Q Consensus       261 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~  331 (577)
                      ......+...++...+...+.+.....  ...    ....+..+...+...|++++|...+++........+   ...+.
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  255 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  255 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            666667778888888888877665421  111    123455566777888888988888887765433222   23455


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008105          332 TLLHSLGSRGCWDAVDKILDIMNE----ASHSP-TVFTYNILINGLCKYGLVDRAINSFNQMVS  390 (577)
Q Consensus       332 ~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  390 (577)
                      .+...+...|++++|...++....    .+..| ....+..+...|.+.|++++|.+.+++..+
T Consensus       256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567778888888888888877653    22222 234667777888888888888888887654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.4e-08  Score=94.69  Aligned_cols=266  Identities=13%  Similarity=0.054  Sum_probs=134.8

Q ss_pred             HHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHH
Q 008105          230 RTMFDNGKFKQAIGFWKDQLRKGCPPY----LITYTILIEQVCKQCGIARAIEVLDDMAIEGC-SPD----IVTYNSLVN  300 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~  300 (577)
                      ..+...|++++|++++++.++.....+    ...+..+...+...|++++|.+.|++...... .++    ...+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            334455555555555555544321111    12344445555555666666666555543210 001    123344455


Q ss_pred             HHHhcCCHHHHHHHHHHHhhC----CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHH
Q 008105          301 FSCKQGKYDDAVLVINNLLSR----GMEPN---SITYNTLLHSLGSRGCWDAVDKILDIMNEASH----SPTVFTYNILI  369 (577)
Q Consensus       301 ~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li  369 (577)
                      .+...|++..+...+.+....    +....   ...+..+...+...|+++.+...+........    ......+....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            566666666666666554321    11111   12334445556666777777666666554321    12233444455


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---CHHHHHHHHH
Q 008105          370 NGLCKYGLVDRAINSFNQMVSK--NCQP----DIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSP---CLITYNTLID  440 (577)
Q Consensus       370 ~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~  440 (577)
                      ..+...++...+...+.+....  ....    ....+......+...|++++|...++.........   ....+..+..
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            5566667776666666554432  1111    11233444555666677777777776655433211   1233445566


Q ss_pred             HHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          441 GLAKKGCMEKAMVLYGQMME----NGISPD-DITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       441 ~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      .+...|++++|...+++...    .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777777777777766642    232232 33455566666677777777776666543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=9.4e-09  Score=95.82  Aligned_cols=184  Identities=5%  Similarity=-0.060  Sum_probs=83.4

Q ss_pred             hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          134 TDASKLIDIMARRNQIPDFHFCINLIRGLIRI--------------DRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       134 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      +.+..+|++++.. .+.+...|...+..+-+.              +..++|..+|++.++...+.+...|...+..+.+
T Consensus        33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            3455667776664 233555555544433221              1234455555555543333344455555555555


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ-VCKQCGIARAIE  278 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~  278 (577)
                      .|+++.|..+|+++.+........+|...+....+.|+++.|.++|+++++.. +.+...|...... +...|+.+.|..
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            55555555555555443211123345555555555555555555555554432 2222222222221 122344444555


Q ss_pred             HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          279 VLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLS  320 (577)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  320 (577)
                      +|+.+.... +.+...|...+....+.|+++.|+.+|++...
T Consensus       191 i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~  231 (308)
T d2onda1         191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT  231 (308)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            554444431 22334444444444444444444444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.8e-08  Score=94.00  Aligned_cols=217  Identities=11%  Similarity=0.026  Sum_probs=164.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          152 FHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG-QIRSAIALLDEMSVSGCEPDVITYNTILR  230 (577)
Q Consensus       152 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~  230 (577)
                      ..+++.+...+.+.+++++|+++++++++.+ +-+...|+....++...| ++++|++.+++..+.. +.+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence            3445566667788899999999999999986 557778898888888876 4899999999988765 567899999999


Q ss_pred             HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC---
Q 008105          231 TMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGK---  307 (577)
Q Consensus       231 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---  307 (577)
                      .+.+.|++++|++.++++++.. |.+...|..+...+.+.|++++|.+.++.+.+.+ +.+...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999998864 6678999999999999999999999999999875 3366788877777666655   


Q ss_pred             ---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH
Q 008105          308 ---YDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAVDKILDIMNEASHS-PTVFTYNILINGLCK  374 (577)
Q Consensus       308 ---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~  374 (577)
                         +++|+..+.+..+... .+...|..+...+... ..+++.+.++...+.... .+...+..+...|..
T Consensus       199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence               5678888888777642 2566666666555443 356666777666554322 234455555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.4e-08  Score=94.66  Aligned_cols=187  Identities=10%  Similarity=0.049  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008105          378 VDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQ  457 (577)
Q Consensus       378 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  457 (577)
                      .++|..+|++.++...+.+...|...+....+.|+.+.|..+|+.+.+.........|...+..+.+.|+++.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45666666666654334455556666666666677777777777666543222234566666666667777777777777


Q ss_pred             HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCC
Q 008105          458 MMENGISPDDITHRTLIWG-FCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSR-YKP  535 (577)
Q Consensus       458 m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p  535 (577)
                      +.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+++.|..+|++.++.. ..|
T Consensus       160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            66543 1223333333322 233466777777777766542 2245566667777777777777777777766532 233


Q ss_pred             C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          536 D--DTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       536 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      +  ...|...+.--...|+.+.+.++.+++.+.
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2  345666666666667777777777766553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=6.9e-09  Score=93.99  Aligned_cols=151  Identities=13%  Similarity=-0.055  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008105          307 KYDDAVLVINNLLSRGMEPN---SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAIN  383 (577)
Q Consensus       307 ~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  383 (577)
                      +.+.++.-+++........+   ..++..+..+|.+.|++++|...|+...+.. +.++.+|+.+..+|.+.|++++|++
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            34455555555554321111   1244455566666677777777776666653 2355666666666777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008105          384 SFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMME  460 (577)
Q Consensus       384 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  460 (577)
                      .|+++.+.. +.+..++..+..++...|++++|...++...+.. +.+......+...+.+.+..+.+..+......
T Consensus        93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            776666653 3345556666666666666666666666665543 23333333333444444444444444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=3.2e-09  Score=100.40  Aligned_cols=261  Identities=8%  Similarity=-0.077  Sum_probs=139.7

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH----------hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLI----------RIDRIEKASKVLQIMVMSGGVPDTIT  189 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~~~~~g~~~~~~~  189 (577)
                      ++.++...-+.+..++|+.+++++++.++. +...|+..-..+.          ..|++++|+..++...+.. +.+...
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            344444444444457888888888876422 4444544332222          2334667777777776654 445666


Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          190 YNMMVGGLCKRG--QIRSAIALLDEMSVSGCEPDVITYNT-ILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQ  266 (577)
Q Consensus       190 ~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  266 (577)
                      |..+..++...+  ++++|...++++.+.. +++...+.. ....+...+.+++|++.++.++... +-+...|+.+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            666666665554  3667777777776553 344555443 3355556677777777777766553 4466667777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 008105          267 VCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSITYNTLLHSLGSRGCWDAV  346 (577)
Q Consensus       267 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a  346 (577)
                      +.+.|++++|...+......  .|+   .......+...+..+++...+....... .++...+..+...+...++.++|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence            77777666655444333221  011   1112222334444555555555554442 12233333444444555555555


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008105          347 DKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSK  391 (577)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  391 (577)
                      ...+....+.. +.+...+..+...+...|+.++|++.|++..+.
T Consensus       262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55555554432 123344555555555566666666666655554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.6e-08  Score=91.49  Aligned_cols=130  Identities=8%  Similarity=-0.183  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          117 EKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       117 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      ..+|..+...|.+.|++++|+..|++.++..+ -+..+|+.+..++.+.|++++|++.|+++++.. +.+..++..+..+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~  114 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  114 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence            34566666777777777777777777776542 366667777777777777777777777776654 2345566666666


Q ss_pred             HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 008105          197 LCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQL  249 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~  249 (577)
                      |...|++++|.+.|++..+.. +.+......+...+.+.+..+.+..+.....
T Consensus       115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_         115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            777777777777777666543 2334433333334444444444444444333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=4.9e-09  Score=99.10  Aligned_cols=59  Identities=5%  Similarity=-0.090  Sum_probs=24.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ..+...+...++.++|...+.+..+.. +.+...+..+...+...|+.++|.+.+++..+
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            333334444444444444444443321 11223334444444444444444444444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=9.2e-05  Score=66.16  Aligned_cols=224  Identities=11%  Similarity=-0.019  Sum_probs=126.4

Q ss_pred             CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008105          116 DEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIR----IDRIEKASKVLQIMVMSGGVPDTITYN  191 (577)
Q Consensus       116 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~  191 (577)
                      |+..+..|...+.+.+++++|++.|++..+.|   +..++..|...|..    ..++..|...++...+.+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            45677777778888888888888888887765   55666666666665    557778888888777655   334444


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          192 MMVGGLCK----RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKGCPPYLITYTIL  263 (577)
Q Consensus       192 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  263 (577)
                      .+...+..    ..+.+.|...++.....|   .......+...+..    ......+...+......+   +...+..|
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence            44444433    456677777777776654   22222223223322    344556666666555433   55556556


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 008105          264 IEQVCK----QCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCK----QGKYDDAVLVINNLLSRGMEPNSITYNTLLH  335 (577)
Q Consensus       264 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  335 (577)
                      ...+..    ..+...+...++...+.|   +......+...|..    ..++++|..+|++..+.|   +...+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            555554    234555555555555443   44444444444443    345566666666655554   3334444444


Q ss_pred             HHHc----cCCHHHHHHHHHHHHhCC
Q 008105          336 SLGS----RGCWDAVDKILDIMNEAS  357 (577)
Q Consensus       336 ~~~~----~g~~~~a~~~~~~~~~~~  357 (577)
                      .|.+    ..+.++|.+.|+...+.|
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            4432    224555555555555444

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.5e-06  Score=72.48  Aligned_cols=86  Identities=14%  Similarity=0.045  Sum_probs=39.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      ...+...|+++.|++.|+++    .+|+..+|..+...+...|++++|++.|++.++.. +.+...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            33444445555555544432    12344444444444444455555555554444443 22344444444444444444


Q ss_pred             HHHHHHHHHHh
Q 008105          204 RSAIALLDEMS  214 (577)
Q Consensus       204 ~~A~~~~~~~~  214 (577)
                      ++|.+.|++..
T Consensus        87 ~~A~~~~~kAl   97 (192)
T d1hh8a_          87 DLAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.8e-06  Score=71.36  Aligned_cols=84  Identities=11%  Similarity=-0.024  Sum_probs=40.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHH
Q 008105          161 GLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQ  240 (577)
Q Consensus       161 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~  240 (577)
                      .+...|+++.|++.|+++.    +|+..+|..+..+|...|++++|.+.|++..+.. +.+...|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence            3344455555555554331    3344444445555555555555555555544433 3344444445555555555555


Q ss_pred             HHHHHHHHH
Q 008105          241 AIGFWKDQL  249 (577)
Q Consensus       241 A~~~~~~~~  249 (577)
                      |++.|++.+
T Consensus        89 A~~~~~kAl   97 (192)
T d1hh8a_          89 AIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.51  E-value=0.00026  Score=63.13  Aligned_cols=48  Identities=17%  Similarity=0.073  Sum_probs=21.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCC
Q 008105          447 CMEKAMVLYGQMMENGISPDDITHRTLIWGFCR----ADQVEEAVDLLKEIGKRG  497 (577)
Q Consensus       447 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~  497 (577)
                      ++++|...|++..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|
T Consensus       197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             chhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            4455555555554443   23333344444432    224445555555554444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.9e-06  Score=64.72  Aligned_cols=92  Identities=13%  Similarity=-0.063  Sum_probs=56.0

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008105          123 ILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQ  202 (577)
Q Consensus       123 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  202 (577)
                      -...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.++..++.+ +.+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            4455666666666666666666653 2255556666666666666666666666666554 3455566666666666666


Q ss_pred             hHHHHHHHHHHhhC
Q 008105          203 IRSAIALLDEMSVS  216 (577)
Q Consensus       203 ~~~A~~~~~~~~~~  216 (577)
                      +++|+..|++..+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            66666666666544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=5.8e-06  Score=75.55  Aligned_cols=61  Identities=10%  Similarity=-0.073  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcC----CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRN----QI-PDFHFCINLIRGLIRIDRIEKASKVLQIMV  179 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  179 (577)
                      .|......|...|++++|.+.|.++.+..    -+ .-..+|..+..+|.+.|++++|.+.++...
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~  104 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI  104 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence            35555666666666666666666554421    00 012344445555555555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=4.3e-06  Score=76.43  Aligned_cols=60  Identities=13%  Similarity=-0.113  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcc------HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008105          470 HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMR------NSAYRLVIHGLCKSKKVDMAIQVLELMI  529 (577)
Q Consensus       470 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~  529 (577)
                      +..+...+...|++++|.+.|+++........      ...+...+..+...|+++.|.+.+++..
T Consensus       161 ~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~  226 (290)
T d1qqea_         161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ  226 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44455555555555555555555444211100      0112223333444555555555555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=5e-06  Score=64.09  Aligned_cols=92  Identities=11%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      -...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..+++..+.+ +.+...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            3455667777777777777777665 4466677777777777777777777777777654 5567777777777777777


Q ss_pred             hHHHHHHHHHHHHC
Q 008105          238 FKQAIGFWKDQLRK  251 (577)
Q Consensus       238 ~~~A~~~~~~~~~~  251 (577)
                      +++|+..|++.++.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.5e-06  Score=67.50  Aligned_cols=90  Identities=11%  Similarity=0.031  Sum_probs=43.2

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI  203 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  203 (577)
                      .+.|.+.|++++|+..|+++++.++ .+...|..+...|...|++++|.+.|+..++.. +.+..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            3444555555555555555554432 244444444445555555555555555554443 22344444444555555555


Q ss_pred             HHHHHHHHHHhh
Q 008105          204 RSAIALLDEMSV  215 (577)
Q Consensus       204 ~~A~~~~~~~~~  215 (577)
                      ++|.+.+++...
T Consensus        95 ~eA~~~~~~a~~  106 (159)
T d1a17a_          95 RAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555544444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.8e-06  Score=66.68  Aligned_cols=102  Identities=12%  Similarity=0.044  Sum_probs=75.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      ....|.+.|++++|+..|++.++.. +.+...|..+...|...|++++|...|++..+.. +.+..+|..+..++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            4456778888888888888888776 4577778888888888888888888888877664 4566778888888888888


Q ss_pred             hHHHHHHHHHHHHCCCCCCHHHHHH
Q 008105          238 FKQAIGFWKDQLRKGCPPYLITYTI  262 (577)
Q Consensus       238 ~~~A~~~~~~~~~~~~~~~~~~~~~  262 (577)
                      +++|.+.+++..... |-+...+..
T Consensus        94 ~~eA~~~~~~a~~~~-p~~~~~~~~  117 (159)
T d1a17a_          94 FRAALRDYETVVKVK-PHDKDAKMK  117 (159)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHH
Confidence            888888888877653 334444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=4.8e-06  Score=71.32  Aligned_cols=98  Identities=11%  Similarity=-0.032  Sum_probs=48.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      |+...+......|.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|...|++..+.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            334444444445555555555555555544443 2344445555555555555555555555554432 22344455555


Q ss_pred             HHHHhCCChHHHHHHHHHHH
Q 008105          230 RTMFDNGKFKQAIGFWKDQL  249 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~  249 (577)
                      .+|...|++++|+..|++.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.28  E-value=6.2e-06  Score=70.57  Aligned_cols=99  Identities=11%  Similarity=-0.037  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008105          115 NDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMV  194 (577)
Q Consensus       115 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  194 (577)
                      |+...+......|.+.|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..|+..++.. +-+...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            677778888999999999999999999999885 4488889999999999999999999999999875 34678899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhh
Q 008105          195 GGLCKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       195 ~~~~~~g~~~~A~~~~~~~~~  215 (577)
                      .+|.+.|++++|...|++..+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999998764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=0.0012  Score=60.23  Aligned_cols=137  Identities=13%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008105          114 ENDEKTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMM  193 (577)
Q Consensus       114 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l  193 (577)
                      .||..--..+++.|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++.+.      -+..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHH
Confidence            35555666788888899999999999976543         677888889999999998887755      266788888


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          194 VGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      ...+.+......|     .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            8888887765443     2223333456666778889999999999999999887643 3567778888888888764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=0.0015  Score=59.62  Aligned_cols=136  Identities=11%  Similarity=0.048  Sum_probs=81.4

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 008105          150 PDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTIL  229 (577)
Q Consensus       150 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li  229 (577)
                      ||..--..++.-|.+.|.++.|..+|..+.         -|..++..+.+.++++.|.+.+.+..      +..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence            444444556667778888888888887653         26667777788888888877776553      666788888


Q ss_pred             HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105          230 RTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG  306 (577)
Q Consensus       230 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  306 (577)
                      ..+.+......+.     +.......+......++..|-..|.+++...+++...... .++...++.++..|++.+
T Consensus        77 ~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          77 FACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            8887776655432     2222334455556677778888888888888888765432 446667777777777754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.21  E-value=5.6e-06  Score=63.19  Aligned_cols=91  Identities=11%  Similarity=-0.027  Sum_probs=68.2

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      -.+...+.+.|++++|+..|++.++..+. +..+|..+..++.+.|++++|+..|++.++.. +.+...|..+...|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence            34566777888888888888888776432 67777777788888888888888888877765 44677777777778888


Q ss_pred             CChHHHHHHHHHH
Q 008105          201 GQIRSAIALLDEM  213 (577)
Q Consensus       201 g~~~~A~~~~~~~  213 (577)
                      |++++|.+.|++.
T Consensus        98 g~~~~A~~~l~~~  110 (112)
T d1hxia_          98 HNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            8888888777765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.16  E-value=7.8e-06  Score=62.36  Aligned_cols=89  Identities=7%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 008105          158 LIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGK  237 (577)
Q Consensus       158 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~  237 (577)
                      +...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|...|++..+.. +.+..+|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            3444555666666666666665554 2345556666666666666666666666655543 3345555556666666666


Q ss_pred             hHHHHHHHHHH
Q 008105          238 FKQAIGFWKDQ  248 (577)
Q Consensus       238 ~~~A~~~~~~~  248 (577)
                      +++|++.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666655553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.2e-06  Score=63.47  Aligned_cols=99  Identities=16%  Similarity=0.261  Sum_probs=67.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcc-HHHHHHHHHH
Q 008105          436 NTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMR-NSAYRLVIHG  511 (577)
Q Consensus       436 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~li~~  511 (577)
                      ..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|+++++++...+..|+ ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456677777778888888888877753 3456777777777776544   4457777877776543333 2356667777


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCCH
Q 008105          512 LCKSKKVDMAIQVLELMISSRYKPDD  537 (577)
Q Consensus       512 ~~~~g~~~~A~~~~~~m~~~~~~p~~  537 (577)
                      |.+.|++++|++.|+++++.  .|+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~--~P~~  105 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT--EPQN  105 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHhhhHHHHHHHHHHHHh--CcCC
Confidence            88888888888888888753  4553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.3e-05  Score=61.99  Aligned_cols=95  Identities=13%  Similarity=0.088  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDR---IEKASKVLQIMVMSGGVPD-TITYNMMVGG  196 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~~~-~~~~~~li~~  196 (577)
                      ..|++.+...+++++|.+.|+..+..+ +.+..++..+..++.+.++   +++|+++|+++...+..|+ ..+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            345566666666666666666666654 2355666666666655333   3446666666655432222 2245555666


Q ss_pred             HHhcCChHHHHHHHHHHhhC
Q 008105          197 LCKRGQIRSAIALLDEMSVS  216 (577)
Q Consensus       197 ~~~~g~~~~A~~~~~~~~~~  216 (577)
                      |.+.|++++|.+.|+++.+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHh
Confidence            66666666666666666554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.00011  Score=60.47  Aligned_cols=126  Identities=10%  Similarity=-0.045  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+......+.+.|++++|+..|.+.++.........              ..-......+       -..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS--------------NEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC--------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc--------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence            345566788888888888888888776421110000              0000001111       1234566677777


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQV  267 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  267 (577)
                      +.|++++|+..+++..... +.++.+|..+..+|...|++++|+..|++.++.. |-|......+....
T Consensus        74 k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            7777777777777777654 4467777777777777777777777777777653 23444444444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=0.00022  Score=58.68  Aligned_cols=129  Identities=7%  Similarity=-0.106  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +......+.+.|++++|++.|.+.++.......              ....-......+       -..+|+.+..+|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence            444566778888888888888887754211000              000111111111       12357778899999


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 008105          235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQG  306 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  306 (577)
                      .|++++|+..++..+... |.+..++..+..++...|++++|...|+...+.. +-+......+-...-+.+
T Consensus        75 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999874 6689999999999999999999999999999874 225555555544443333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=8.5e-05  Score=57.91  Aligned_cols=95  Identities=11%  Similarity=0.142  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHH
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGV-PD-----TITYNMM  193 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~-----~~~~~~l  193 (577)
                      +..+...|.+.|++++|+..|++.++.++ .+..++..+..+|.+.|++++|++.++++++.... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            45566777778888888888887777643 36777777777777778888887777777653211 11     1245555


Q ss_pred             HHHHHhcCChHHHHHHHHHHhh
Q 008105          194 VGGLCKRGQIRSAIALLDEMSV  215 (577)
Q Consensus       194 i~~~~~~g~~~~A~~~~~~~~~  215 (577)
                      ...+...+++++|.+.|++...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            5666666677777777766554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.80  E-value=0.00049  Score=55.33  Aligned_cols=123  Identities=8%  Similarity=-0.098  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008105          119 TNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLC  198 (577)
Q Consensus       119 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~  198 (577)
                      .+..-...+.+.|++.+|+..|.++++.-......             ...........       ....+|+.+..+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~-------------~~~~~~~~~~~-------~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW-------------DDQILLDKKKN-------IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC-------------CCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh-------------hhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence            45556778888999999999998887642110000             00000000000       11235666777777


Q ss_pred             hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008105          199 KRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTIL  263 (577)
Q Consensus       199 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  263 (577)
                      +.|++++|++.+++..+.. +.+..+|..+..++...|++++|+..|++.++.. |-|..+...+
T Consensus        79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l  141 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY  141 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            7777777777777776654 4567777777777777777777777777777653 3344444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00014  Score=56.57  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=65.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---Ccc---HHHHHHH
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN---KMR---NSAYRLV  508 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~---~~~~~~l  508 (577)
                      +..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|.+.++++.+...   .+.   ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3445666777777777777777777643 23566777777777777777777777777655211   100   2355666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008105          509 IHGLCKSKKVDMAIQVLELMISSRYKPDDTVF  540 (577)
Q Consensus       509 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  540 (577)
                      ...+...+++++|++.|++.+..  .|+....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  115 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL  115 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence            66777777888888887776642  3444443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.75  E-value=0.00064  Score=55.61  Aligned_cols=143  Identities=11%  Similarity=-0.023  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008105          118 KTNNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGL  197 (577)
Q Consensus       118 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~  197 (577)
                      ..+......+.+.|++.+|+..|++.+..-....             ....+. ......+       ....|+.+..+|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~-------------~~~~~~-~~~~~~~-------~~~~~~Nla~~~   74 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY-------------GLSEKE-SKASESF-------LLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-------------SCCHHH-HHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-------------ccchhh-hhhcchh-------HHHHHHhHHHHH
Confidence            3455667778888888888888877654210000             000000 0001111       123455666777


Q ss_pred             HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHH
Q 008105          198 CKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGI-ARA  276 (577)
Q Consensus       198 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A  276 (577)
                      .+.|++++|+..+++..... +.+..+|..+..++...|++++|+..|++++... |.+......+-....+.+.. +..
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence            77888888888877777654 5567777777778888888888888888777653 44555555554444443332 223


Q ss_pred             HHHHHHH
Q 008105          277 IEVLDDM  283 (577)
Q Consensus       277 ~~~~~~~  283 (577)
                      .+++..|
T Consensus       153 kk~~~~~  159 (168)
T d1kt1a1         153 RRTYANM  159 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=0.00025  Score=58.30  Aligned_cols=130  Identities=12%  Similarity=-0.059  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK  199 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  199 (577)
                      +......+.+.|++++|+..|.++++..            ..........+...       .. +.....|..+..+|.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~~-------~~-~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGAK-------LQ-PVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHGG-------GH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHHH-------hC-hhhHHHHHHHHHHHHh
Confidence            4455677888899999999888776420            00000111111110       00 1234566777778888


Q ss_pred             cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008105          200 RGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQC  271 (577)
Q Consensus       200 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  271 (577)
                      .|++++|+..+++..+.. +.+...|..+..++...|++++|++.|++.++.. |.+......+.....+..
T Consensus        90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence            888888888888887765 5567788888888888888888888888887763 445666665555444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.69  E-value=0.00095  Score=53.53  Aligned_cols=124  Identities=13%  Similarity=-0.036  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 008105          155 CINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD  234 (577)
Q Consensus       155 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~  234 (577)
                      +..-...+.+.|++.+|+..|++.+..-....             ... +..  ......    .....+|+.+..+|.+
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~-~~~--~~~~~~----~~~~~~~~Nla~~~~~   79 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWD-DQI--LLDKKK----NIEISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCC-CHH--HHHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhh-hHH--HHHhhh----hHHHHHHhhHHHHHHH
Confidence            34445667788899999888888775311100             000 000  001111    1123567789999999


Q ss_pred             CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 008105          235 NGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVN  300 (577)
Q Consensus       235 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~  300 (577)
                      .|++++|++.+++.++.. |.+..+|..+..++...|++++|...|+...+.. +-+..+...+-.
T Consensus        80 l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~  143 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL  143 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             hcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            999999999999999874 6788999999999999999999999999999874 224444444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.68  E-value=0.00042  Score=56.83  Aligned_cols=132  Identities=11%  Similarity=0.004  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 008105          156 INLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDN  235 (577)
Q Consensus       156 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  235 (577)
                      ......+.+.|++++|++.|.++++.            ...........+...    +.    +.+...|..+..++.+.
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~~   90 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLKM   90 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHhh
Confidence            34556677889999999998887642            010111111111100    00    23456778888999999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 008105          236 GKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYD  309 (577)
Q Consensus       236 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  309 (577)
                      |++++|+..+.+.++.. |.+..+|..+..++.+.|++++|.+.|+...+.. +.+......+.....+.....
T Consensus        91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1          91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999874 6688899999999999999999999999999874 335566666665554444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.65  E-value=0.00046  Score=57.06  Aligned_cols=125  Identities=10%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008105          121 NKILQNFCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKR  200 (577)
Q Consensus       121 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~  200 (577)
                      ..........|++++|.+.|.+.+....  ....        ........+...-..+..    .....+..+...+.+.
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWR--GPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCC--SSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHC
Confidence            3445688999999999999999987521  1100        000000011111111111    1234667788888889


Q ss_pred             CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 008105          201 GQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQAIGFWKDQLR-----KGCPPYLITY  260 (577)
Q Consensus       201 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~  260 (577)
                      |++++|...++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...+-
T Consensus        81 g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          81 GRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999988888764 56788888899999999999999888888643     5788887653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.62  E-value=0.00065  Score=55.59  Aligned_cols=142  Identities=6%  Similarity=-0.088  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 008105          154 FCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQI-RSAIALLDEMSVSGCEPDVITYNTILRTM  232 (577)
Q Consensus       154 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~li~~~  232 (577)
                      .+......+.+.|++++|...|++.+..-               -..-.. .+-....+.+       ....|+.+..+|
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~---------------~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~   74 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWL---------------EMEYGLSEKESKASESF-------LLAAFLNLAMCY   74 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------TTCCSCCHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHhhccchhhhhhcchh-------HHHHHHhHHHHH
Confidence            34556677889999999999988876420               000000 0111111111       234567788899


Q ss_pred             HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH-HH
Q 008105          233 FDNGKFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYD-DA  311 (577)
Q Consensus       233 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A  311 (577)
                      .+.|++++|+..++..+... |.+..+|..+..++...|++++|...|+++.... +.+......+-....+.+... ..
T Consensus        75 ~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          75 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999874 7789999999999999999999999999999864 334555555555544444333 33


Q ss_pred             HHHHHHHh
Q 008105          312 VLVINNLL  319 (577)
Q Consensus       312 ~~~~~~m~  319 (577)
                      .+++..|.
T Consensus       153 kk~~~~~f  160 (168)
T d1kt1a1         153 RRTYANMF  160 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.5e-05  Score=75.20  Aligned_cols=228  Identities=8%  Similarity=-0.049  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 008105          274 ARAIEVLDDMAIEGCSPD-IVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPNSI-TYNTLLHSLGSRGCWDAVDKILD  351 (577)
Q Consensus       274 ~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~  351 (577)
                      -+|.+.|++....  +|+ ...+..+..++...+++++|   ++++...  .|+.. ..+..-...  ...+..+.+.++
T Consensus         3 ~eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~ie~~r   73 (497)
T d1ya0a1           3 LQSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence            3688888888765  344 45667777888888888876   6666644  22211 111111111  112345666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008105          352 IMNEASHSPTVFTYNILING--LCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCS  429 (577)
Q Consensus       352 ~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  429 (577)
                      ...+....++..-.......  +...+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+.......  
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            66654433333222222212  223445555555555444332 4456677778888888899999988776655432  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHH
Q 008105          430 PCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVI  509 (577)
Q Consensus       430 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li  509 (577)
                       ...++..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... .|-..++..|.
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~  227 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ  227 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence             13567778889999999999999999998853 3346789999999999999999999999988764 45677788887


Q ss_pred             HHHHhcC
Q 008105          510 HGLCKSK  516 (577)
Q Consensus       510 ~~~~~~g  516 (577)
                      ..+.+..
T Consensus       228 ~~~~~~~  234 (497)
T d1ya0a1         228 KALSKAL  234 (497)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7775543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.2e-05  Score=77.61  Aligned_cols=227  Identities=14%  Similarity=-0.013  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHH
Q 008105          170 KASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDV-ITYNTILRTMFDNGKFKQAIGFWKDQ  248 (577)
Q Consensus       170 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~  248 (577)
                      +|.+.|++..+.. +.....+..+..+|...|++++|   |+++...  .|+. ..++..  ...-...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHHh
Confidence            6778888887652 12244566677788888888766   6666543  2221 111111  111111245566666666


Q ss_pred             HHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 008105          249 LRKGCPPYLITYTILIEQ--VCKQCGIARAIEVLDDMAIEGCSPDIVTYNSLVNFSCKQGKYDDAVLVINNLLSRGMEPN  326 (577)
Q Consensus       249 ~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  326 (577)
                      .+....++..-....+..  ....+.++.|+..+....... +++...+..+...+.+.|+.++|...+.......   .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence            654333333222222111  222344445544444333221 2344566667777777778777777666654321   1


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008105          327 SITYNTLLHSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGA  406 (577)
Q Consensus       327 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~  406 (577)
                      ..++..+...+...|++++|...+.+..+.. |.+...|+.+...+...|+..+|+..|.+.+... +|.+.++..|...
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            2456666777777788888888887777664 3455677788888888888888888887777664 5667777777666


Q ss_pred             HHhc
Q 008105          407 LCKE  410 (577)
Q Consensus       407 ~~~~  410 (577)
                      +.+.
T Consensus       230 ~~~~  233 (497)
T d1ya0a1         230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.0011  Score=54.57  Aligned_cols=124  Identities=14%  Similarity=0.054  Sum_probs=90.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 008105          157 NLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNG  236 (577)
Q Consensus       157 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~  236 (577)
                      .........|++++|.+.|...+...  +...        +......+.+...-..+.    ......+..+...+.+.|
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~----~~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALV----EDKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            34567788999999999999998752  1110        000111111222222222    123456788999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHhhH
Q 008105          237 KFKQAIGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAI-----EGCSPDIVTY  295 (577)
Q Consensus       237 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  295 (577)
                      ++++|+..++++++.. |-+...|..++.++.+.|+..+|++.|+++..     .|+.|+..+-
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            9999999999999874 77899999999999999999999999998754     5899987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.50  E-value=9.4e-05  Score=65.64  Aligned_cols=54  Identities=20%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008105          127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMS  181 (577)
Q Consensus       127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  181 (577)
                      ..+.|++++|+..+++.++.. +.|...+..+...|+..|++++|.+.|+...+.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            445677777777777777664 336666777777777777777777777777665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.48  E-value=9.7e-05  Score=65.53  Aligned_cols=123  Identities=10%  Similarity=-0.049  Sum_probs=75.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 008105          162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFDNGKFKQA  241 (577)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~A  241 (577)
                      ..+.|++++|++.+++.++.. +.|...+..+...|+..|++++|.+.|+...+.. +-+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            346788899999998888876 5578888888899999999999998888887663 22344444444444333222222


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008105          242 IGFWKDQLRKGCPPYLITYTILIEQVCKQCGIARAIEVLDDMAIE  286 (577)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  286 (577)
                      ..-.......+.+++...+......+.+.|+.++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            211111000111222333344455566777788877777777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.00038  Score=55.33  Aligned_cols=73  Identities=8%  Similarity=-0.062  Sum_probs=48.7

Q ss_pred             HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008105          127 FCSRGKLTDASKLIDIMARRNQIPDFHFCINLIRGLIRI----------DRIEKASKVLQIMVMSGGVPDTITYNMMVGG  196 (577)
Q Consensus       127 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~  196 (577)
                      |-+.+.+++|+..|+..++.. |.+..++..+..+|...          +.+++|++.|++.++.. +.+..+|..+..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            345566888999998888875 34777788777777644          33466777777776654 3455666666666


Q ss_pred             HHhcC
Q 008105          197 LCKRG  201 (577)
Q Consensus       197 ~~~~g  201 (577)
                      |...|
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            65543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.23  E-value=0.001  Score=52.74  Aligned_cols=39  Identities=18%  Similarity=-0.004  Sum_probs=23.2

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008105          162 LIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRG  201 (577)
Q Consensus       162 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  201 (577)
                      |-+.+.+++|++.|+..++.. +.++..+..+..++...+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~   45 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELS   45 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhh
Confidence            345556667777777766665 445566666666665433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.08  E-value=0.008  Score=47.99  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008105          503 SAYRLVIHGLCKSKKVDMAIQVLELMISS-----RYKPD-----DTVFSTIVKKVADDGMTEEAYKLWQKLIEW  566 (577)
Q Consensus       503 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (577)
                      ..|+.+..+|...|++++|.+.+++.++.     ...++     ...+..+..+|...|++++|.+.|++.++.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555566666666666666666655531     11121     123455566667777777777777666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.97  E-value=0.0065  Score=48.56  Aligned_cols=56  Identities=13%  Similarity=0.092  Sum_probs=28.1

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHcCCC-CC----------hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          124 LQNFCSRGKLTDASKLIDIMARRNQI-PD----------FHFCINLIRGLIRIDRIEKASKVLQIMV  179 (577)
Q Consensus       124 i~~~~~~g~~~~A~~l~~~~~~~~~~-~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~  179 (577)
                      ...+.+.|++++|++.|++.++.... |+          ...|+.+..+|.+.|++++|.+.+++.+
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44555666677777776666543211 11          2334444455555555555554444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0048  Score=44.45  Aligned_cols=64  Identities=8%  Similarity=0.036  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---C--CCc-cHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          467 DITHRTLIWGFCRADQVEEAVDLLKEIGKR---G--NKM-RNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       467 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      ...+..+...+.+.|++++|...|++..+.   .  ..+ ...++..+..++.+.|++++|+..++++++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            334445666677777777777777766541   1  111 134566677777777777777777777764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0075  Score=43.36  Aligned_cols=63  Identities=6%  Similarity=-0.007  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHHcCC-----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 008105          120 NNKILQNFCSRGKLTDASKLIDIMARRNQ-----IP-DFHFCINLIRGLIRIDRIEKASKVLQIMVMSG  182 (577)
Q Consensus       120 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g  182 (577)
                      +-.+...+.+.|++++|+..|++.++...     .+ ...+++.+..++.+.|++++|+..++++++..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            44566666677777777777666654311     11 13345556666666666666666666666553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.52  E-value=0.054  Score=41.44  Aligned_cols=110  Identities=14%  Similarity=0.059  Sum_probs=51.9

Q ss_pred             ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 008105          132 KLTDASKLIDIMARRNQIPDFHFCINLIRGLIRIDRIEKASKVLQIMVMSGGVPDTITYNMMVGGLCK----RGQIRSAI  207 (577)
Q Consensus       132 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~  207 (577)
                      ++++|+++|++..+.|   +...+..+..  ....+.++|.+++++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4566677776666655   2222322321  22345566666666655554   33444444444433    23455555


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 008105          208 ALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAIGFWKDQLRKG  252 (577)
Q Consensus       208 ~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~  252 (577)
                      ++|++..+.|   ++.....|...|..    ..+.++|.++|++..+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            5555555443   23333334333333    234455555555544443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.33  E-value=0.065  Score=40.96  Aligned_cols=110  Identities=8%  Similarity=-0.023  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 008105          167 RIEKASKVLQIMVMSGGVPDTITYNMMVGGLCKRGQIRSAIALLDEMSVSGCEPDVITYNTILRTMFD----NGKFKQAI  242 (577)
Q Consensus       167 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~~~~~~A~  242 (577)
                      ++++|+++|++..+.|   +......|.  .....+.++|.+++++..+.|   +......|...|..    ..+.++|+
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            5667777777776665   222222222  122345566666666665544   33444444444433    33455555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 008105          243 GFWKDQLRKGCPPYLITYTILIEQVCK----QCGIARAIEVLDDMAIEG  287 (577)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  287 (577)
                      ++|++..+.|   ++.....|...|..    ..+.++|.++|+...+.|
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            5555555544   33333334333333    234444444444444433

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.76  E-value=0.23  Score=36.46  Aligned_cols=139  Identities=13%  Similarity=0.088  Sum_probs=86.9

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008105          409 KEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVD  488 (577)
Q Consensus       409 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  488 (577)
                      -.|..++..+++.+...+.   +..-||-+|--....-+-+...++++..-+.   -|          ...+++......
T Consensus        14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHH
Confidence            3456666666665555432   3444555554444444444444444443221   01          112334333333


Q ss_pred             HHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          489 LLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       489 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      .+-.+-     .+...+...++.+...|+-+.-.++++.+.+ +-+|++...-.+..+|.+.|...++-+++.+.-++|.
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            332221     2445677788888999999999999888777 4488899999999999999999999999999888876


Q ss_pred             C
Q 008105          569 F  569 (577)
Q Consensus       569 ~  569 (577)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=0.39  Score=35.47  Aligned_cols=66  Identities=17%  Similarity=0.269  Sum_probs=36.6

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008105          465 PDDITHRTLIWGFCRADQ---VEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMIS  530 (577)
Q Consensus       465 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  530 (577)
                      |...+-....+++.++.+   .++++.+++++.+.+..-....+-.+.-+|.+.|++++|.+.++.+++
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            445555555566665533   446666666665533111123444455566667777777777766664

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=3.7  Score=38.11  Aligned_cols=203  Identities=9%  Similarity=-0.041  Sum_probs=107.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008105          341 GCWDAVDKILDIMNEASHSPTVFTYNILINGL----CKYGLVDRAINSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEA  416 (577)
Q Consensus       341 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A  416 (577)
                      .+.+.+..++......... +..-+..+-...    ...+..+.+...+......+  .+.....-.+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            3566666666665543222 222222222222    22345566666666655543  2333333344445556677777


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 008105          417 LQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKR  496 (577)
Q Consensus       417 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  496 (577)
                      ...+..|.... .....-.-=+..++...|+.++|...|......   ++   |-..+.+ .+.|..-.       +...
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~-------~~~~  369 (450)
T d1qsaa1         305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE-------LKID  369 (450)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC-------CCCC
T ss_pred             HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC-------CCcC
Confidence            77776664322 111222234556666777777777777776532   33   2222221 11221000       0000


Q ss_pred             CC--CccH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008105          497 GN--KMRN----SAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVKKVADDGMTEEAYKLWQKLI  564 (577)
Q Consensus       497 ~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (577)
                      .+  .+..    ..-..-+..+...|+..+|...|..+.+.   .+......+.....+.|.++.|+....+..
T Consensus       370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            00  0000    00112456677899999999999988753   356677788888999999999998766553

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.48  E-value=4.2  Score=37.77  Aligned_cols=202  Identities=13%  Similarity=-0.002  Sum_probs=124.6

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008105          306 GKYDDAVLVINNLLSRGMEPNSITYNTLL----HSLGSRGCWDAVDKILDIMNEASHSPTVFTYNILINGLCKYGLVDRA  381 (577)
Q Consensus       306 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  381 (577)
                      .+.+.|..++......... +...+..+-    ......+..+.+...+......+  .+.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            5778888888887654322 222222222    22334566788888888777664  3444444555566778999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008105          382 INSFNQMVSKNCQPDIVTYNTVLGALCKEGMLNEALQLLHLLNGSSCSPCLITYNTLIDGLAKKGCMEKAMVLYGQMMEN  461 (577)
Q Consensus       382 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  461 (577)
                      ...+..|.... .......-=+..++...|+.++|...|..+...   ++   |-.++.+- +.|..-.       +...
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~  369 (450)
T d1qsaa1         305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKID  369 (450)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCC
T ss_pred             HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcC
Confidence            99999886432 223344445678889999999999999988642   33   44433321 2221100       0000


Q ss_pred             CCC--CC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008105          462 GIS--PD-DIT---HRTLIWGFCRADQVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELM  528 (577)
Q Consensus       462 g~~--p~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  528 (577)
                      .++  ++ ...   -..-+..+...|....|...|..+...   .+......+.....+.|.++.|+....+.
T Consensus       370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            000  01 000   112345567889999999999888753   24445667788888999999999887766

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.26  E-value=1.5  Score=32.08  Aligned_cols=63  Identities=21%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 008105          435 YNTLIDGLAKKGCMEKAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGKRGN  498 (577)
Q Consensus       435 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  498 (577)
                      .+..++....+|+-++-.+++.++.+. -+|++.....+..+|.+-|...++.+++.+.-+.|+
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            334444455555555555555554442 245555555555555555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.65  E-value=1.3  Score=32.52  Aligned_cols=28  Identities=14%  Similarity=-0.004  Sum_probs=13.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008105          541 STIVKKVADDGMTEEAYKLWQKLIEWKV  568 (577)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (577)
                      -.|.-+|.+.|++++|.++++++++..|
T Consensus        77 Y~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          77 YYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3344444455555555555555554333

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.40  E-value=1.4  Score=30.50  Aligned_cols=63  Identities=8%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             CHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008105          482 QVEEAVDLLKEIGKRGNKMRNSAYRLVIHGLCKSKKVDMAIQVLELMISSRYKPDDTVFSTIVK  545 (577)
Q Consensus       482 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  545 (577)
                      +.=+..+-++.+...++.|.+....+.+++|.+.+++.-|.++++-...+ ..++..+|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            34455666666666777788888888888888888888888888766642 2334556665543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.72  E-value=3.3  Score=28.57  Aligned_cols=46  Identities=11%  Similarity=0.147  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 008105          450 KAMVLYGQMMENGISPDDITHRTLIWGFCRADQVEEAVDLLKEIGK  495 (577)
Q Consensus       450 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  495 (577)
                      ++.+-+..+....+.|++....+.+.+|.+-.++.-|.++|+.+..
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444444444555555555555555555555555555555443