Citrus Sinensis ID: 008156
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FPS0 | 494 | Ubiquitin carboxyl-termin | yes | no | 0.710 | 0.827 | 0.497 | 1e-103 | |
| A4QNN3 | 519 | Ubiquitin carboxyl-termin | yes | no | 0.734 | 0.815 | 0.269 | 2e-30 | |
| Q70CQ3 | 517 | Ubiquitin carboxyl-termin | yes | no | 0.753 | 0.839 | 0.263 | 4e-28 | |
| Q3UN04 | 517 | Ubiquitin carboxyl-termin | yes | no | 0.501 | 0.558 | 0.268 | 7e-19 | |
| A2BGT0 | 491 | Ubiquitin carboxyl-termin | yes | no | 0.369 | 0.433 | 0.300 | 4e-18 | |
| P40818 | 1118 | Ubiquitin carboxyl-termin | no | no | 0.420 | 0.216 | 0.253 | 2e-11 | |
| A6NNY8 | 438 | Ubiquitin carboxyl-termin | no | no | 0.475 | 0.625 | 0.251 | 2e-11 | |
| Q8CEG8 | 438 | Ubiquitin carboxyl-termin | no | no | 0.475 | 0.625 | 0.248 | 5e-11 | |
| Q80U87 | 1080 | Ubiquitin carboxyl-termin | no | no | 0.428 | 0.228 | 0.251 | 1e-10 | |
| P0CAQ1 | 624 | Ubiquitin carboxyl-termin | no | no | 0.510 | 0.471 | 0.244 | 2e-09 |
| >sp|Q9FPS0|UBP27_ARATH Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1 | Back alignment and function desciption |
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Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 212/426 (49%), Positives = 279/426 (65%), Gaps = 17/426 (3%)
Query: 26 KWVSASGLLGILGVAGFVLALKKDAKIGNLSGFSWLSEKE-NRLEKLCLVPGLQNLGNNC 84
+WVS G+LGVAGFV A ++ NL+ S +E + + LVPGLQNLGNNC
Sbjct: 25 QWVSHLSFAGLLGVAGFVFA-QQHGLFRNLNNLKLFSGREKDSGDDSFLVPGLQNLGNNC 83
Query: 85 FLNVILQALASCTCFLPFLQKVMGECE-----EPDEDLPLTVALASLLEELCLVGETRLV 139
FLNVILQALASC F FLQ V+ + E +E LPLT AL++LL+EL VG R V
Sbjct: 84 FLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQELGTVGSRRSV 143
Query: 140 LSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESS-LVDAFEAAS 198
+P+KVM+ + Y +NFNLTSQQDA EA LHL+SSL+EE + Y P++SS L D + +
Sbjct: 144 SNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDILFSRN 203
Query: 199 CRILSLKRR-EVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSPVL 257
R+L+ E KRW KH GPFDGILGS L C++C SQISL++QFFH+LPLSP+L
Sbjct: 204 LRMLAPSEGLHGLMELKRWHKHLRGPFDGILGSTLMCRTCSSQISLEFQFFHTLPLSPLL 263
Query: 258 DSGS-TIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRCS 316
G I GCTLE CLK+FL E++ENY C CWH AA+KYLS+ A E EIE+LR C
Sbjct: 264 HHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRCWHGAALKYLSVIGAAETEIEKLRSCG 323
Query: 317 AQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHI 376
+D C+C++ LHL+ +PWSN +SH LK+L I+ P++LCI +QR S N M E K+ GHI
Sbjct: 324 GEDQCDCKTSLHLQRMPWSNSYSHILKQLIIARFPKLLCIQVQRASFN-MFEEFKLSGHI 382
Query: 377 AFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLT 436
AFPL+L+L F S +G+N ++E R + ++P +S NH Y + +G T
Sbjct: 383 AFPLVLNLSLFTPSSIGVN-IEE---RIEMSSEYQKPEASKNH--GMYRLVTVVEHFGRT 436
Query: 437 GKNNHT 442
G ++T
Sbjct: 437 GSGHYT 442
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|A4QNN3|UBP30_XENTR Ubiquitin carboxyl-terminal hydrolase 30 OS=Xenopus tropicalis GN=usp30 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q70CQ3|UBP30_HUMAN Ubiquitin carboxyl-terminal hydrolase 30 OS=Homo sapiens GN=USP30 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q3UN04|UBP30_MOUSE Ubiquitin carboxyl-terminal hydrolase 30 OS=Mus musculus GN=Usp30 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2BGT0|UBP30_DANRE Ubiquitin carboxyl-terminal hydrolase 30 OS=Danio rerio GN=usp30 PE=3 SV=1 | Back alignment and function description |
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| >sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6NNY8|UBP27_HUMAN Ubiquitin carboxyl-terminal hydrolase 27 OS=Homo sapiens GN=USP27X PE=2 SV=3 | Back alignment and function description |
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| >sp|Q8CEG8|UBP27_MOUSE Ubiquitin carboxyl-terminal hydrolase 27 OS=Mus musculus GN=Usp27 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8 PE=1 SV=2 | Back alignment and function description |
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| >sp|P0CAQ1|UBP16_EMENI Ubiquitin carboxyl-terminal hydrolase 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ubp16 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| 359480863 | 641 | PREDICTED: ubiquitin carboxyl-terminal h | 0.986 | 0.886 | 0.559 | 1e-169 | |
| 296082534 | 532 | unnamed protein product [Vitis vinifera] | 0.901 | 0.975 | 0.570 | 1e-159 | |
| 147795076 | 559 | hypothetical protein VITISV_026074 [Viti | 0.901 | 0.928 | 0.570 | 1e-158 | |
| 255584060 | 503 | ubiquitin-specific protease, putative [R | 0.795 | 0.910 | 0.534 | 1e-143 | |
| 356528531 | 563 | PREDICTED: ubiquitin carboxyl-terminal h | 0.944 | 0.966 | 0.521 | 1e-143 | |
| 356511141 | 549 | PREDICTED: ubiquitin carboxyl-terminal h | 0.940 | 0.987 | 0.513 | 1e-143 | |
| 449461457 | 559 | PREDICTED: ubiquitin carboxyl-terminal h | 0.925 | 0.953 | 0.504 | 1e-138 | |
| 297797922 | 493 | predicted protein [Arabidopsis lyrata su | 0.710 | 0.829 | 0.495 | 1e-102 | |
| 18420436 | 494 | ubiquitin carboxyl-terminal hydrolase 27 | 0.710 | 0.827 | 0.497 | 1e-102 | |
| 334187318 | 505 | ubiquitin carboxyl-terminal hydrolase 27 | 0.710 | 0.809 | 0.485 | 2e-99 |
| >gi|359480863|ref|XP_002275476.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 332/593 (55%), Positives = 409/593 (68%), Gaps = 25/593 (4%)
Query: 1 MKCEGATSVRALVLQSLKNGF--LPHMKWVSASGL----LGILGVAGFVLALKKDAKIGN 54
MK EG SV + ++ K+GF L +KW S SGL G+L +AGFV+A+K D K+GN
Sbjct: 1 MKIEGNVSV-SFSIRKFKHGFWILSRIKWFSISGLHISVAGLLSIAGFVVAIK-DNKMGN 58
Query: 55 LSGFSWLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC---- 110
W SE+ + +LCL PGLQNLGNNCFLNVILQALASC CF FL ++M E
Sbjct: 59 FGSLPWSSERGDFSSELCLAPGLQNLGNNCFLNVILQALASCFCFRQFLHRIMEESKSSL 118
Query: 111 -EEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFL 169
EE E LPLT AL +LLEELC R VLSP+KVMLAM LYI NFNLT QQDA EAFL
Sbjct: 119 DEEGVESLPLTTALTTLLEELCATHGGRKVLSPRKVMLAMALYIPNFNLTRQQDAAEAFL 178
Query: 170 HLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILG 229
HL+S LREEF E Y PN SSL +CRIL+ +R SEQ+RW++HF GPF+GILG
Sbjct: 179 HLLSCLREEFSECYVPNYSSLAGVSAFPNCRILTPTKRGQPSEQERWQRHFLGPFNGILG 238
Query: 230 SILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSH 289
S LTCQSC QI+LD++FFHSL LSPVL++G I GCT+EDCL+QF+ AEQ+ENYHC
Sbjct: 239 SFLTCQSCSFQITLDFEFFHSLSLSPVLNNGGAIMAGCTVEDCLRQFVVAEQVENYHCHS 298
Query: 290 CWHIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISH 349
CWHIAA KYLS+ NE EI++LR C Q SC+CR+ L+LE +PWSN FS TLK+LSI
Sbjct: 299 CWHIAATKYLSLRSGNEAEIQKLRCCREQGSCDCRNLLNLEAVPWSNSFSRTLKQLSIVR 358
Query: 350 CPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVL 409
CP+ILCIHLQR S+ GEL K+ GHI+FPLIL+L PF+KS VGI + ++++ R +AK
Sbjct: 359 CPKILCIHLQRASMTIFGELTKVQGHISFPLILNLLPFMKSEVGIKNWEDNFLRQRAKQQ 418
Query: 410 NERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCT------AHEKEFRGES 463
N++P L H ++D ++LN IYGL G+N +++A DELG T + GES
Sbjct: 419 NQQPVPDLKHFKLQFDTRMLNCIYGLEGENMNSEARYADELGSTTLKLMGSMNFPTLGES 478
Query: 464 ILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQP-NTYLYRLASVVEHFGRVGSGHYTVYR 522
L T S D +++ + + ++ C +T+ Y L SVVEHFGR GSGHYTVYR
Sbjct: 479 SLAETGGFS-----DTKLEHRRDEVSMARDCDSLDTHSYHLVSVVEHFGRDGSGHYTVYR 533
Query: 523 SVRVESHEENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIE 575
VR E +E N F L HWFCISDSQVYSVS DVLAAEASLLFYERI++
Sbjct: 534 RVRTEQEKEFHNGQFAPSLGHWFCISDSQVYSVSEKDVLAAEASLLFYERIVD 586
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082534|emb|CBI21539.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147795076|emb|CAN60856.1| hypothetical protein VITISV_026074 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255584060|ref|XP_002532774.1| ubiquitin-specific protease, putative [Ricinus communis] gi|223527484|gb|EEF29613.1| ubiquitin-specific protease, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356528531|ref|XP_003532855.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356511141|ref|XP_003524288.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449461457|ref|XP_004148458.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 27-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297797922|ref|XP_002866845.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312681|gb|EFH43104.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18420436|ref|NP_568058.1| ubiquitin carboxyl-terminal hydrolase 27 [Arabidopsis thaliana] gi|75262796|sp|Q9FPS0.1|UBP27_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 27; AltName: Full=Deubiquitinating enzyme 27; Short=AtUBP27; AltName: Full=Ubiquitin thioesterase 27; AltName: Full=Ubiquitin-specific-processing protease 27 gi|11993494|gb|AAG42765.1|AF302675_1 ubiquitin-specific protease 27 [Arabidopsis thaliana] gi|13877891|gb|AAK44023.1|AF370208_1 putative ubiquitin-specific protease UBP27 [Arabidopsis thaliana] gi|22136950|gb|AAM91704.1| putative ubiquitin-specific protease UBP27 [Arabidopsis thaliana] gi|332661662|gb|AEE87062.1| ubiquitin carboxyl-terminal hydrolase 27 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334187318|ref|NP_001190965.1| ubiquitin carboxyl-terminal hydrolase 27 [Arabidopsis thaliana] gi|332661663|gb|AEE87063.1| ubiquitin carboxyl-terminal hydrolase 27 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 576 | ||||||
| UNIPROTKB|J9NVH6 | 498 | USP30 "Ubiquitin carboxyl-term | 0.460 | 0.532 | 0.273 | 2e-32 | |
| MGI|MGI:2140991 | 517 | Usp30 "ubiquitin specific pept | 0.458 | 0.510 | 0.276 | 4.3e-32 | |
| RGD|1307949 | 517 | Usp30 "ubiquitin specific pept | 0.458 | 0.510 | 0.284 | 6.4e-32 | |
| UNIPROTKB|F1PY84 | 520 | USP30 "Ubiquitin carboxyl-term | 0.463 | 0.513 | 0.269 | 6.7e-32 | |
| UNIPROTKB|B3KUS5 | 486 | USP30 "Ubiquitin carboxyl-term | 0.460 | 0.545 | 0.273 | 7.5e-28 | |
| UNIPROTKB|F1MSB6 | 517 | USP30 "Ubiquitin carboxyl-term | 0.461 | 0.514 | 0.281 | 7.7e-28 | |
| UNIPROTKB|Q70CQ3 | 517 | USP30 "Ubiquitin carboxyl-term | 0.460 | 0.512 | 0.273 | 1.1e-27 | |
| UNIPROTKB|F1RGB2 | 517 | USP30 "Ubiquitin carboxyl-term | 0.460 | 0.512 | 0.277 | 3.5e-27 | |
| ZFIN|ZDB-GENE-060526-335 | 491 | usp30 "ubiquitin specific pept | 0.461 | 0.541 | 0.291 | 1e-26 | |
| UNIPROTKB|E1C214 | 809 | USP16 "Ubiquitin carboxyl-term | 0.142 | 0.101 | 0.423 | 1.8e-21 |
| UNIPROTKB|J9NVH6 USP30 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Score = 246 (91.7 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 80/292 (27%), Positives = 128/292 (43%)
Query: 60 WLSEKENRLEKLCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLP- 118
W E + + LVPGL NLGN CF+N +LQ L++C F+ +L++ + ++ P
Sbjct: 34 WGPITERKKRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIKWLEEFTTQYTRDQKETPP 93
Query: 119 ---LTVALASLLEEL-CLVGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSS 174
L++ L LL+ L C VL ++ + +Y + +QDA E F + SS
Sbjct: 94 HQYLSLTLLHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSS 153
Query: 175 LREEFLESYSPNESSLVDAF------EAASCRILSLKRREVQSEQKRWRKHFFGPFDGIL 228
L +E P + L D E +I R W+ PF G L
Sbjct: 154 LEDE--RDRQPRVTHLFDVHSLEQQPEITPKQITCRTRGSPHPTSNHWKSQH--PFHGRL 209
Query: 229 GSILTCQSCLSQISLDYQFFHSLPLS-PVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHC 287
S + C+ C Q + + F SL LS P G + TL+ CL F+++E + + C
Sbjct: 210 TSNMVCKHCEHQSPVRFDTFDSLSLSIPAATWGHPL----TLDHCLHHFISSESVRDVVC 265
Query: 288 SHCWHIAAIKYLSITEANEME---IEELRRCSAQDSCNCRSRLHLETLPWSN 336
+C I A L+ + +++L+ C C +HL+ L WS+
Sbjct: 266 DNCTQIEAKGTLNGEKVEHQRTTFVKQLK-LGKLPQCLC---IHLQRLSWSS 313
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| MGI|MGI:2140991 Usp30 "ubiquitin specific peptidase 30" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1307949 Usp30 "ubiquitin specific peptidase 30" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PY84 USP30 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B3KUS5 USP30 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1MSB6 USP30 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q70CQ3 USP30 "Ubiquitin carboxyl-terminal hydrolase 30" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RGB2 USP30 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-060526-335 usp30 "ubiquitin specific peptidase 30" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C214 USP16 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019361001 | RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (506 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 576 | |||
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 7e-24 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 3e-22 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 3e-18 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 4e-18 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 6e-16 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 7e-16 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-14 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-12 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 9e-11 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-09 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-09 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 3e-09 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 3e-08 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 4e-08 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 8e-08 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-07 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 4e-07 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-06 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-06 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 3e-06 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-05 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 7e-05 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-04 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 2e-04 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 0.001 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 0.001 |
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
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Score = 100 bits (250), Expect = 7e-24
Identities = 64/308 (20%), Positives = 87/308 (28%), Gaps = 149/308 (48%)
Query: 76 GLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGE 135
GL NLGN CF+N +LQALAS + +L++ +
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL---------------------------- 32
Query: 136 TRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFE 195
QQDA E F L+ +L +
Sbjct: 33 ------------------------EQQDAHELFQVLLETLEQLL---------------- 52
Query: 196 AASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLPLSP 255
PFDG+L S + C C + Y+ F L L
Sbjct: 53 -------------------------KFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPV 87
Query: 256 VLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEELRRC 315
S + G TLE CL FL+ E +++Y C C
Sbjct: 88 PNQSSGS---GTTLEHCLDDFLSTEIIDDYKCDRC------------------------- 119
Query: 316 SAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGH 375
+ I PQILCIHL R + G K
Sbjct: 120 ----------------------------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCK 151
Query: 376 IAFPLILD 383
++FP L
Sbjct: 152 VSFPERLP 159
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Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
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| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
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| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
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| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
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| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
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| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
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| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
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| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 100.0 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.93 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.81 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 98.58 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 97.62 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 97.32 | |
| KOG1887 | 806 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 95.31 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 93.06 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 91.48 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 90.31 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 88.94 | |
| PF08715 | 320 | Viral_protease: Papain like viral protease; InterP | 85.88 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 84.65 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 84.36 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 83.67 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 83.54 |
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-65 Score=519.37 Aligned_cols=301 Identities=28% Similarity=0.471 Sum_probs=263.3
Q ss_pred CCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHHH
Q 008156 72 CLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAMEL 151 (576)
Q Consensus 72 ~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~~ 151 (576)
..++||.|+|||||+|||||||.++|+|..||+...+.........|++++|+..+... ..+.+.+|+|..|+..|+.
T Consensus 106 ~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A--~~~~g~pisP~~i~s~L~~ 183 (545)
T KOG1865|consen 106 AVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRA--LHNPGHPISPSQILSNLRN 183 (545)
T ss_pred cCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHH--hcCCCCccChHHHHHhhhh
Confidence 37999999999999999999999999999999998877666668899999999988776 3455569999999999999
Q ss_pred HhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeece
Q 008156 152 YIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSI 231 (576)
Q Consensus 152 ~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s~ 231 (576)
+..+|..+.|+||||||++++|.|+..+..-.........+ ...+..+|+|.++++
T Consensus 184 I~~~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~~~sq~------------------------ttlv~~iFGG~LrS~ 239 (545)
T KOG1865|consen 184 ISAHFGRGRQEDAHEFLRFTVDAMQKACLPGHKQVDPRSQD------------------------TTLVHQIFGGYLRSQ 239 (545)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHhhcCCCccCCccccc------------------------ceehhhhhccchhhc
Confidence 99999999999999999999999999875221111111111 223778999999999
Q ss_pred EEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHHH
Q 008156 232 LTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEME 308 (576)
Q Consensus 232 i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~~ 308 (576)
|+|..|.+ .+.++|+.++|+|.+. ...+|+++|++|+++|.++| |.|++|+.+
T Consensus 240 vkC~~C~~-vS~tyE~~~dltvei~--------d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~--------------- 295 (545)
T KOG1865|consen 240 IKCLHCKG-VSDTYEPYLDLTLEIQ--------DASSLQQALEQFTKPEKLDGENAYHCGRCKQK--------------- 295 (545)
T ss_pred eecccCCC-cccccccccceEEEec--------cchhHHHHHHHhhhHHhhCCccccccchhhhh---------------
Confidence 99999997 7999999999999544 33499999999999999965 999999998
Q ss_pred HHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceeeeccceeeccccccCcCc
Q 008156 309 IEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVKIWGHIAFPLILDLFPFV 388 (576)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~Ki~~~V~fP~~Ldl~~~~ 388 (576)
+.|.|+..|.++|+||+||||||.+ ++..||.++|.||+.|||.||+
T Consensus 296 ------------------------------v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~I~fPE~LDl~PyM 342 (545)
T KOG1865|consen 296 ------------------------------VPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKPVSFPETLDLQPYM 342 (545)
T ss_pred ------------------------------CcccceeeeecCCceEEEeeehhcc---CcccccccccCCcccccccccc
Confidence 9999999999999999999999997 3446999999999999999999
Q ss_pred cCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCCCC
Q 008156 389 KSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPT 468 (576)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (576)
+.+
T Consensus 343 S~~----------------------------------------------------------------------------- 345 (545)
T KOG1865|consen 343 SQP----------------------------------------------------------------------------- 345 (545)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 642
Q ss_pred CCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecC-CCCCeEEEEEEecccCCCCCCCCCCCCCCCceEEE
Q 008156 469 QSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCI 547 (576)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~-~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~~ 547 (576)
...+..|.|+|||+|.|. ..+|||+||||. .++.||+|
T Consensus 346 --------------------------~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks---------------~~g~Wy~~ 384 (545)
T KOG1865|consen 346 --------------------------NEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS---------------QNGQWYKM 384 (545)
T ss_pred --------------------------CCCCceEEEEEEEEeccccccCCceEEEEEc---------------CCCceEEc
Confidence 124458999999999999 999999999996 58899999
Q ss_pred eCCceeeechhhhccCceEEEEEEec
Q 008156 548 SDSQVYSVSVNDVLAAEASLLFYERI 573 (576)
Q Consensus 548 nD~~V~~v~~~~v~~~~aYlLfY~rv 573 (576)
||+.|+.++.+.|+++.||||||.|-
T Consensus 385 DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 385 DDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred cCceeeeccccceecccceEEEEEee
Confidence 99999999999999999999999984
|
|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
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| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
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| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
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| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
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| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
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| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
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| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
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| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
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| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 576 | ||||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 3e-12 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 6e-11 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 2e-09 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 2e-09 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 3e-09 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 7e-07 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-06 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 2e-04 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 3e-06 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 3e-06 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 4e-05 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 6e-05 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 8e-05 |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
|
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 6e-33
Identities = 66/339 (19%), Positives = 107/339 (31%), Gaps = 86/339 (25%)
Query: 76 GLQNLGNNCFLNVILQALASCTCFLPFL--QKVMGECEEPDEDLPLTVALASLLEELCLV 133
GL N+G+ CF++ ILQ L F+ Q C+ D + AL ++ EL
Sbjct: 143 GLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGA 202
Query: 134 GETRLV----------LSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESY 183
T+ ++ QN SQQDA E + +++ + + ++
Sbjct: 203 LNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQSYVLDL 262
Query: 184 SPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISL 243
+ + C + ++ F+G L S + C C +
Sbjct: 263 PNAKEVSRANNKQCECIVHTV-------------------FEGSLESSIVCPGCQNNSKT 303
Query: 244 DYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQL--ENYHCSHCWHIAAIKYLSI 301
F L L I L +CL F EQL NYHC C
Sbjct: 304 TIDPFLDLSLD--------IKDKKKLYECLDSFHKKEQLKDFNYHCGEC----------- 344
Query: 302 TEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRV 361
S QD+ +K+L I P +L + L+R
Sbjct: 345 -------------NSTQDA---------------------IKQLGIHKLPSVLVLQLKRF 370
Query: 362 SINEMGELVKIWGHIAFPLILDLFPFVKSGVGINDLDES 400
G K+ I FP L++ + + +
Sbjct: 371 EHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENG 409
|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 100.0 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 97.37 | |
| 3mp2_A | 211 | Non-structural protein 3; papain-like protease, TG | 96.83 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 96.83 | |
| 2fe8_A | 315 | PP1AB, ORF1AB, replicase polyprotein 1AB; protease | 95.7 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 95.56 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 95.17 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 93.23 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 92.31 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 92.2 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 89.99 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 89.76 | |
| 1qmy_A | 167 | Protease, leader protease; hydrolase, sulfhydryl p | 88.1 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 85.71 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 85.6 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 85.65 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 85.33 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 85.16 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 85.02 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 84.86 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 84.81 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 84.63 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 84.43 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 84.04 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 83.5 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 83.03 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 82.52 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 82.13 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 81.99 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 81.77 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 81.59 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 81.23 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 80.66 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 80.62 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 80.6 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-66 Score=538.07 Aligned_cols=336 Identities=26% Similarity=0.423 Sum_probs=266.0
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccC-----CCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGEC-----EEPDEDLPLTVALASLLEELCLVGETRLVLSPQKV 145 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~-----~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~ 145 (576)
.++++||.|+||||||||+||||+++|+|+++|....... .......+++.+|+.||..||. +....++|..|
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~--~~~~~i~P~~~ 82 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWS--GRDAHVAPRMF 82 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTS--SSCSEECCHHH
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHc--CCCCCcCHHHH
Confidence 4589999999999999999999999999999998743221 1122356899999999999975 34478999999
Q ss_pred HHHHHHHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhccccccc
Q 008156 146 MLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFD 225 (576)
Q Consensus 146 ~~~l~~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~ 225 (576)
+.+++...+.|.+++||||||||.+||+.|+++++.....+.....+..+.+.... ....+......-.+.|.++|+
T Consensus 83 ~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~---a~~~w~~~~~~~~s~i~~~F~ 159 (367)
T 2y6e_A 83 KTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVV---AKEAWENHRLRNDSVIVDTFH 159 (367)
T ss_dssp HHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHH---HHHHHHHHHHHCCSHHHHHHC
T ss_pred HHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHH---HHHHHHHHHHhcCCccccccC
Confidence 99999999999999999999999999999999987654432211111100000000 000000000111234788999
Q ss_pred ceeeceEEecCCCCcccccccccceeecccCCCCCC-----------CCCCCCCHHHHHhhhcCeeeccc---cccCCcc
Q 008156 226 GILGSILTCQSCLSQISLDYQFFHSLPLSPVLDSGS-----------TIPFGCTLEDCLKQFLTAEQLEN---YHCSHCW 291 (576)
Q Consensus 226 g~~~s~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~-----------~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~ 291 (576)
|.+.++++|..|++ .+.++|+|++|+|+++..... ......+|++||+.|+.+|.+++ |.|++|+
T Consensus 160 G~l~s~~~C~~C~~-~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~ 238 (367)
T 2y6e_A 160 GLFKSTLVCPECAK-VSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCK 238 (367)
T ss_dssp EEEEEEEECTTTCC-EEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTT
T ss_pred cEEeeeEEeCCCCC-EeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCC
Confidence 99999999999996 699999999999965543211 12345699999999999999985 9999999
Q ss_pred hhhhhhhhccccccHHHHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCCCceee
Q 008156 292 HIAAIKYLSITEANEMEIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEMGELVK 371 (576)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~~~~~K 371 (576)
.. +.+.|+..|.++|+||+|||+||.|+.. ...|
T Consensus 239 ~~---------------------------------------------~~a~K~~~i~~lP~vL~i~LkRF~~~~~-~~~K 272 (367)
T 2y6e_A 239 KH---------------------------------------------QQATKKFDLWSLPKILVVHLKRFSYNRY-WRDK 272 (367)
T ss_dssp EE---------------------------------------------ECCEEEEEEEECCSEEEEEEECEEECSS-CEEE
T ss_pred CC---------------------------------------------ceEEEEEEEecCCcEEEEEEeCeeecCc-ccee
Confidence 87 8999999999999999999999999754 4689
Q ss_pred eccceeecc-ccccCcCccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCcccc
Q 008156 372 IWGHIAFPL-ILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDEL 450 (576)
Q Consensus 372 i~~~V~fP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (576)
+.++|.||. .|||.+|+....
T Consensus 273 ~~~~v~fp~~~Ldl~~~~~~~~---------------------------------------------------------- 294 (367)
T 2y6e_A 273 LDTVVEFPIRGLNMSEFVCNLS---------------------------------------------------------- 294 (367)
T ss_dssp CCCCEECCSSCEECGGGBSCSS----------------------------------------------------------
T ss_pred cCceEEecCCcCChhhhccCCC----------------------------------------------------------
Confidence 999999997 699999995420
Q ss_pred CCccccccccCCCCCCCCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCC
Q 008156 451 GCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHE 530 (576)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~ 530 (576)
.....|+|+|||+|.|++++|||+||+|..
T Consensus 295 ---------------------------------------------~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~----- 324 (367)
T 2y6e_A 295 ---------------------------------------------ARPYVYDLIAVSNHYGAMGVGHYTAYAKNK----- 324 (367)
T ss_dssp ---------------------------------------------SCCCEEEEEEEEEEECSSSSCEEEEEEECT-----
T ss_pred ---------------------------------------------CCCceEEEEEEeecCCCCCCCeeeEEEEcC-----
Confidence 123479999999999999999999999963
Q ss_pred CCCCCCCCCCCCceEEEeCCceeeechhhhccCceEEEEEEeccC
Q 008156 531 ENPNEHFETPLTHWFCISDSQVYSVSVNDVLAAEASLLFYERIIE 575 (576)
Q Consensus 531 ~~~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~rv~~ 575 (576)
.+++||+|||+.|++|++++|+...||||||+|++.
T Consensus 325 ---------~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 360 (367)
T 2y6e_A 325 ---------LNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDD 360 (367)
T ss_dssp ---------TTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC
T ss_pred ---------CCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCC
Confidence 478999999999999999999999999999999874
|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 576 | ||||
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 1e-19 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 4e-18 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 5e-12 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 1e-16 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 2e-12 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 7e-11 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-04 |
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.4 bits (225), Expect = 2e-20
Identities = 64/510 (12%), Positives = 130/510 (25%), Gaps = 128/510 (25%)
Query: 73 LVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCL 132
L G +N+GN C+LN LQAL + + ++ E+
Sbjct: 5 LPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEM-- 62
Query: 133 VGETRLVLSPQKVMLAMELYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVD 192
++ ++ L L+++LR+ + + +
Sbjct: 63 ----------KRCFENLQNKSFKSVLPVV---------LLNTLRKCYPQFAERDSQGGFY 103
Query: 193 AFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGSILTCQSCLSQISLDYQFFHSLP 252
+ A L S + F F + + + + I++ S
Sbjct: 104 KQQDAEELFTQLF----HSMSIVFGDKFSEDFRIQFKTTIKDTANDNDITVKENESDSKL 159
Query: 253 LSPVLDSGSTIPFGCTLEDCLKQFLTAEQLENYHCSHCWHIAAIKYLSITEANEMEIEEL 312
+ + + L E L
Sbjct: 160 QCHISG------TTNFMRNGLL-----EGLNEKIEKRS---------------------- 186
Query: 313 RRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVK 371
D S + IS P+ L + R + K
Sbjct: 187 ------DLTGANSIYS--------------VEKKISRLPKFLTVQYVRFFWKRSTNKKSK 226
Query: 372 IWGHIAFPLILDLFPFVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNS 431
I + FP LD+ + + + + + + + + R+
Sbjct: 227 ILRKVVFPFQLDVADMLTPEYAAEKVKVRDEL---RKVEKEKNEKEREIKRR-------- 275
Query: 432 IYGLTGKNNHTKALGVDELGCTAHEKEFRGESILPPTQSGSNVRGRDIQMQPDDEVIGSS 491
K +++ + L ++ + P+ E
Sbjct: 276 -----------KFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLE----- 319
Query: 492 QLCQPNTYLYRLASVVEHFGR-VGSGHYTVYRSVRVESHEENPNEHFETPLTHWFCISDS 550
+ + +Y L V+ H G SGHY + +R E E W+ +D
Sbjct: 320 -KGENPSCVYNLIGVITHQGANSESGHYQAF--IRDELDEN-----------KWYKFNDD 365
Query: 551 QVYSVSVNDVLAAE-------ASLLFYERI 573
+V V + + A +L Y+
Sbjct: 366 KVSVVEKEKIESLAGGGESDSALILMYKGF 395
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 576 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 96.5 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 95.02 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 94.47 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 93.5 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 90.53 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 87.3 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 84.74 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d1qmya_ | 156 | FMDV leader protease {Foot-and-mouth disease virus | 84.5 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 84.34 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 82.06 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 81.4 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-58 Score=477.61 Aligned_cols=294 Identities=20% Similarity=0.265 Sum_probs=247.5
Q ss_pred cCCCCCcccCCCchhhHHHHHHHhccchhHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHhcCCCCceeChHHHHHHHH
Q 008156 71 LCLVPGLQNLGNNCFLNVILQALASCTCFLPFLQKVMGECEEPDEDLPLTVALASLLEELCLVGETRLVLSPQKVMLAME 150 (576)
Q Consensus 71 ~~~~~GL~NlGNTCY~NSvLQ~L~~~p~f~~~l~~~~~~~~~~~~~~~l~~~L~~L~~~l~~~~~~~~~i~p~~~~~~l~ 150 (576)
.+|.+||.|+||||||||+||+|+++|+|++++....... .....++..+|+.||..|+... .++.|..++..+.
T Consensus 3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~---~~~~~~~~~~~~~ 77 (347)
T d1nbfa_ 3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSD---KPVGTKKLTKSFG 77 (347)
T ss_dssp SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT--CCTTTCHHHHHHHHHHHHHHCS---SCBCCHHHHHHTT
T ss_pred CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC--CcccchHHHHHHHHHHHHhcCC---CCcChHHHHHhhc
Confidence 4578999999999999999999999999999998765442 2356789999999999997643 4788989888775
Q ss_pred HHhhccCCCccccHHHHHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhhhhchhhhhhhHHhhhhhhcccccccceeec
Q 008156 151 LYIQNFNLTSQQDAEEAFLHLMSSLREEFLESYSPNESSLVDAFEAASCRILSLKRREVQSEQKRWRKHFFGPFDGILGS 230 (576)
Q Consensus 151 ~~~~~f~~~~QqDA~Efl~~Lld~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~g~~~s 230 (576)
. +.|..+.||||+|||..||+.|++++..... .+.|.++|.|.+.+
T Consensus 78 ~--~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~--------------------------------~~~i~~lF~g~~~~ 123 (347)
T d1nbfa_ 78 W--ETLDSFMQHDVQELCRVLLDNVENKMKGTCV--------------------------------EGTIPKLFRGKMVS 123 (347)
T ss_dssp C--CGGGGGSCBCHHHHHHHHHHHHHHHHTTSTT--------------------------------TTHHHHHHCEEEEE
T ss_pred h--hhcchHHHHHHHHHHHHHHHHHHHHHhhccc--------------------------------cccccceeceEEEE
Confidence 3 5688899999999999999999999865321 12267799999999
Q ss_pred eEEecCCCCcccccccccceeecccCCCCCCCCCCCCCHHHHHhhhcCeeeccc---cccCCcchhhhhhhhccccccHH
Q 008156 231 ILTCQSCLSQISLDYQFFHSLPLSPVLDSGSTIPFGCTLEDCLKQFLTAEQLEN---YHCSHCWHIAAIKYLSITEANEM 307 (576)
Q Consensus 231 ~i~C~~C~~~~s~~~e~f~~LsL~~~~~~~~~~~~~~sL~~~L~~~~~~E~i~~---~~C~~C~~~~~~~~l~~~~~~~~ 307 (576)
.++|..|++ .+.+.|+|+.|+|++. ...++.++|..++..|.+++ +.|..|+.
T Consensus 124 ~~~C~~C~~-~s~~~e~f~~l~L~i~--------~~~~~~~~l~~~~~~e~l~~~~~~~~~~~~~--------------- 179 (347)
T d1nbfa_ 124 YIQCKEVDY-RSDRREDYYDIQLSIK--------GKKNIFESFVDYVAVEQLDGDNKYDAGEHGL--------------- 179 (347)
T ss_dssp EEEESSSCC-EEEEEEEESSEEEECT--------TCCBHHHHHHHHTCCEEECGGGCEECSTTCE---------------
T ss_pred eEEeCCccc-eeeeeccccccccccc--------cccchhhhHHhhcchheeccccccccccCcc---------------
Confidence 999999996 6889999999999543 23489999999999999986 34444443
Q ss_pred HHHHHHHhhccCccccccccccCCCCCCcccccceeEEEeecCCceEEEEeeceEEcCC-CceeeeccceeeccccccCc
Q 008156 308 EIEELRRCSAQDSCNCRSRLHLETLPWSNKFSHTLKKLSISHCPQILCIHLQRVSINEM-GELVKIWGHIAFPLILDLFP 386 (576)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~~L~IhL~Rf~~~~~-~~~~Ki~~~V~fP~~Ldl~~ 386 (576)
..+.|+..|.++|+||+|||+||.|+.. +...|+..+|.||+.|||.+
T Consensus 180 -------------------------------~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~ 228 (347)
T d1nbfa_ 180 -------------------------------QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE 228 (347)
T ss_dssp -------------------------------ECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGG
T ss_pred -------------------------------eeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeecccc
Confidence 7899999999999999999999999875 66789999999999999999
Q ss_pred CccCCCCCCCchhHHhhhhhccccCCCCCccccccccchhhhhhhcccCCCCCCCCccCCccccCCccccccccCCCCCC
Q 008156 387 FVKSGVGINDLDESWQRGQAKVLNERPSSSLNHVNRKYDAKVLNSIYGLTGKNNHTKALGVDELGCTAHEKEFRGESILP 466 (576)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (576)
|+....
T Consensus 229 ~~~~~~-------------------------------------------------------------------------- 234 (347)
T d1nbfa_ 229 FLQKTD-------------------------------------------------------------------------- 234 (347)
T ss_dssp GBSSCC--------------------------------------------------------------------------
T ss_pred cccccc--------------------------------------------------------------------------
Confidence 984421
Q ss_pred CCCCCCCccCCCcCCCCCcccccccCCCCCCCceEEEeEEEEeecCCCCCeEEEEEEecccCCCCCCCCCCCCCCCceEE
Q 008156 467 PTQSGSNVRGRDIQMQPDDEVIGSSQLCQPNTYLYRLASVVEHFGRVGSGHYTVYRSVRVESHEENPNEHFETPLTHWFC 546 (576)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVV~H~G~~~sGHY~ayvr~~~~~~~~~~~~~~~~~~~~W~~ 546 (576)
......|+|+|||+|.|.+++|||+||+|.. .+++||+
T Consensus 235 ----------------------------~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~--------------~~~~W~~ 272 (347)
T d1nbfa_ 235 ----------------------------PKDPANYILHAVLVHSGDNHGGHYVVYLNPK--------------GDGKWCK 272 (347)
T ss_dssp ----------------------------TTSCCEEEEEEEEEEEEETTEEEEEEEECTT--------------SSSCCEE
T ss_pred ----------------------------ccCccceeeEEEEEecCCCCCCEEEEeeecC--------------CCCEEEE
Confidence 1234579999999999999999999999953 5679999
Q ss_pred EeCCceeeechhhhccC---------------ceEEEEEEecc
Q 008156 547 ISDSQVYSVSVNDVLAA---------------EASLLFYERII 574 (576)
Q Consensus 547 ~nD~~V~~v~~~~v~~~---------------~aYlLfY~rv~ 574 (576)
|||+.|++|++++|+.. +||||||+|.+
T Consensus 273 fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~ 315 (347)
T d1nbfa_ 273 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES 315 (347)
T ss_dssp EETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGG
T ss_pred EECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecC
Confidence 99999999999999853 49999999975
|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|