Citrus Sinensis ID: 008165


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
MGVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVTDEEHKDRDHHLDKASAHLIAKLQSKDREKKGEKKFKKKGLVEPITSVDIEGEELFPD
ccHHHHHHHHHHHccHHHHHHcccccccccccEEEEEEEHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccHHHHHHHccccEEEEccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHcccccccHHHHHHHHHHHccccccEEEEEEEEEcccccccccHHHHcccccccccccccccccccccccccccccEEEEEcccEEEEccccccHHHHHHHHHcccccEEEcccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHcccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHcHHHccccccccccHHHccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccHHHHccHHHHHHHHHHHcEEHHcccHHHHHHcccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHccccHHHHHHEEHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcEEccccHHHHHHHHHccccccHccccHHHHHcccccHHHHHHHHHHEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccHccccccccccccccccHHcccccccccccccHHHcHcccccccccccccccccccccccccccccccccccc
MGVANAWRFSLISANLASLhqqngcnggtnkqYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYsqrlvkpslysklkdgivrrhqpidiwksryskyyhgcserrkkfprarserssnGYLLIAAsgglnqqrtgiTDAVVVARILNATLvvpeldhhsywkddsdfanifdVDHFISSLAKDVTIvkrvpdkvmrsmekppytmrvprkstpeyyldqvlPILLRRRVVQLTKFDYRLANDLDEELQKMRCrvnyhalrftkpIEELGQKLVMRMRSMAKRFIAVHLrfepdmlafsgcyygggdkeryELGEIRKRwatlpdlspegerkrgkcpltphEVGLMLRALgfandthlyvasgeiyggeetlrplrelfpnfytkemladeelkpflqFSSRLAAIDyivcdesdvfvtnnngnmAKILAGRRRymghkrtirpnaKRLSALFMAKNQMDWDTFARKVKScqrgfmgepeemkpgrgefhefpyscicekpvtdeehkdrdhHLDKASAHLIAKLQSKDREKKGEKKfkkkglvepitsvdiegeelfpd
MGVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPslysklkdgivrrhqpidiwksryskyyhgcserrkkfprarserssNGYLLIaasgglnqqrTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFIsslakdvtivkrvpdkvmrsmekppytmrvprkstpeyyldqvlpilLRRRVVQLTKFDYRlandldeelQKMRCRvnyhalrftkpieeLGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRwatlpdlspegerkrgkcPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDEsdvfvtnnngnmakilagrrrymgHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVTDEEHKDRDHHLDKASAHLiaklqskdrekkgekkfkkkglvepitsvdiegeelfpd
MGVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVTDEEHKDRDHHLDKASAHLIAKLQSKDRekkgekkfkkkgLVEPITSVDIEGEELFPD
****NAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCS****************GYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPD********************PEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATL*************CPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQR***************FHEFPYSCICE*************************************************************
****NAWRFSLISANLAS**********TNKQYVLWRWRF***QRRKIPWSLICGLMLFALGLISLFTGHVA*************************************SKYYHGCSE***************GYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSME**PYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRW***************KCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEML************SRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMG**RTIRPNAKRLSALFMAKNQMDWDTFAR***********************HEFPYSCI***************************************************************
MGVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGC**************SSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVT**********LDKASAHLIAKLQS*************KGLVEPITSVDIEGEELFPD
*GVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKP***********************************************************
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQRRKIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVTDEEHKDRDHHLDKASAHLIAKLQSKDREKKGEKKFKKKGLVEPITSVDIEGEELFPD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query575 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.756 0.838 0.384 2e-77
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 181/471 (38%), Positives = 265/471 (56%), Gaps = 36/471 (7%)

Query: 52  LICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSK 111
           LIC L L       LF+ ++ S+ E        P+  SK+           ++W+S  S 
Sbjct: 33  LICTLSL-------LFSANIGSNRE--------PTRPSKINVE--------ELWESAKSG 69

Query: 112 YYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELD 171
            +   S  R  +P    E  +NGYL +  +GGLNQQR+ I +AV+ ARI+NATLV+PELD
Sbjct: 70  GWRPSSAPRSDWPPPTKE--TNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELD 127

Query: 172 HHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPD--KVMRSMEKPPYTMRVPRKSTPE 229
            +S+W DDS F  I+DV+HFI +L  DV IV ++PD  K  ++ +   + +R PR +  E
Sbjct: 128 ANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPRDAPIE 187

Query: 230 YYLDQVLPILLRRRVVQLTKFDYRLANDLDE-ELQKMRCRVNYHALRFTKPIEELGQKLV 288
           +YL   L  +     + LT F +RLA ++D  E Q++RCRVNYHALRF   I +L + +V
Sbjct: 188 WYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIV 247

Query: 289 MRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKR 348
            ++RS    F+++HLRFE DMLAF+GC+     +E+  L + RK       L     R  
Sbjct: 248 DKLRSQG-HFMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENFADKRLIYNERRAI 306

Query: 349 GKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEML-ADEE 407
           GKCPLTP EVGL+LRA+ F N T +Y+A+GE++GGE+ ++P R LFP       +   EE
Sbjct: 307 GKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEE 366

Query: 408 LKPFLQFSSRLAAIDYIVCDESDVFVTNNNG--NMAKILAGRRRYMGHKRTIRPNAKRLS 465
           L    Q     +A+DY+VC  SD+F+   +G  N A  L G R Y G + TIRP+ K L+
Sbjct: 367 LSATSQ-GLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALA 425

Query: 466 ALFMAKNQMDWDTFARKVKSC--QRGFMGEPEEMKPGRGEFHEFPYSCICE 514
            +F+A+ +     F   V+    +  F G  + + P     + +P  C C+
Sbjct: 426 PIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSWP-ECFCQ 475





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
255579615592 conserved hypothetical protein [Ricinus 0.993 0.964 0.75 0.0
359495962572 PREDICTED: DUF246 domain-containing prot 0.970 0.975 0.760 0.0
224071093573 predicted protein [Populus trichocarpa] 0.973 0.977 0.739 0.0
449458966551 PREDICTED: DUF246 domain-containing prot 0.906 0.945 0.782 0.0
224137852522 predicted protein [Populus trichocarpa] 0.843 0.929 0.808 0.0
356540530553 PREDICTED: DUF246 domain-containing prot 0.892 0.927 0.771 0.0
357476829636 DUF246 domain-containing protein [Medica 0.827 0.748 0.820 0.0
356495599545 PREDICTED: DUF246 domain-containing prot 0.886 0.935 0.770 0.0
147826938557 hypothetical protein VITISV_039538 [Viti 0.944 0.974 0.719 0.0
356565361548 PREDICTED: DUF246 domain-containing prot 0.886 0.930 0.751 0.0
>gi|255579615|ref|XP_002530648.1| conserved hypothetical protein [Ricinus communis] gi|223529781|gb|EEF31717.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/596 (75%), Positives = 491/596 (82%), Gaps = 25/596 (4%)

Query: 1   MGVANAWRFSLISANLASLHQQNGCNG--------------GTNKQYVLWRWRFYASQRR 46
           MGVA AWRFSLISA+LA  HQQNG +                 N     WR      QR+
Sbjct: 1   MGVAKAWRFSLISADLAPSHQQNGSHNPKRGGGGGKHYHHYHHNHSNEWWRSSATQQQRK 60

Query: 47  KIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWK 106
           KIPWSL+CGLMLF LGLISLFTGHVASDLEWYSQRLVK SL  +L  G   R + IDIW 
Sbjct: 61  KIPWSLVCGLMLFVLGLISLFTGHVASDLEWYSQRLVKRSL-GRLDGG---RREQIDIWD 116

Query: 107 SRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV 166
           S+YSK+++GCSER + F  A  E+SSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV
Sbjct: 117 SKYSKFFYGCSERGRNFAPAIREKSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV 176

Query: 167 VPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKS 226
           VPELDHHSYWKDDSDF NIFDVD FIS LAKDVTIVKRVPDKVMR+MEKPPYTMRVPRKS
Sbjct: 177 VPELDHHSYWKDDSDFVNIFDVDWFISYLAKDVTIVKRVPDKVMRTMEKPPYTMRVPRKS 236

Query: 227 TPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEE-LQKMRCRVNYHALRFTKPIEELGQ 285
            PEYYLDQVLPILLRR VVQLTKFDYRLAN+LDEE LQK+RCRVNYHALRF K I+++GQ
Sbjct: 237 PPEYYLDQVLPILLRRHVVQLTKFDYRLANNLDEEELQKLRCRVNYHALRFAKSIQDIGQ 296

Query: 286 KLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGE 345
            LVM+MR M  RFIAVHLRFEPDMLAFSGCYYGGG+KER+ELGEIRKRW TLPDLS E E
Sbjct: 297 GLVMKMRKMTSRFIAVHLRFEPDMLAFSGCYYGGGEKERFELGEIRKRWDTLPDLSAEEE 356

Query: 346 RKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLAD 405
           R RGKCPLTPHEVGLMLRALGFANDT++YVASGEIYGGEETLRPLRELFPNFYTKEMLA+
Sbjct: 357 RARGKCPLTPHEVGLMLRALGFANDTYIYVASGEIYGGEETLRPLRELFPNFYTKEMLAN 416

Query: 406 EELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLS 465
           EELKPFL FSSRLAAIDYIVCDESDVFVTNNNGNMAKILAG+RRY GHKRTIRPNAKRLS
Sbjct: 417 EELKPFLPFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGQRRYAGHKRTIRPNAKRLS 476

Query: 466 ALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVT-DEEHKD 524
            L M +N+MDWDTFA+KVK+CQRGFMGEP+EM+PGRGEFHE+P SCICEKP + DE  KD
Sbjct: 477 KLLMVRNKMDWDTFAKKVKACQRGFMGEPDEMRPGRGEFHEYPSSCICEKPFSNDESGKD 536

Query: 525 RDHHLDKASAHLIAKLQSKD-REKKGEKKF---KKKGLVE-PITSVDIEGEELFPD 575
             H L +   +    +QSK  +E  G++     KK+ + E P+   D E ++ FPD
Sbjct: 537 EGHLLHQVPMNSKENVQSKYFKENPGDESLRISKKRSMEEDPVNLTDAEDDDKFPD 592




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495962|ref|XP_002267185.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] gi|297744383|emb|CBI37357.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224071093|ref|XP_002303356.1| predicted protein [Populus trichocarpa] gi|222840788|gb|EEE78335.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449458966|ref|XP_004147217.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449504948|ref|XP_004162338.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224137852|ref|XP_002326456.1| predicted protein [Populus trichocarpa] gi|222833778|gb|EEE72255.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356540530|ref|XP_003538741.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|357476829|ref|XP_003608700.1| DUF246 domain-containing protein [Medicago truncatula] gi|355509755|gb|AES90897.1| DUF246 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495599|ref|XP_003516662.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|147826938|emb|CAN66567.1| hypothetical protein VITISV_039538 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356565361|ref|XP_003550910.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
TAIR|locus:2130938549 AT4G16650 [Arabidopsis thalian 0.921 0.965 0.725 4.6e-215
TAIR|locus:2014619572 AT1G76270 [Arabidopsis thalian 0.826 0.830 0.580 3.5e-146
TAIR|locus:2121793551 RHS17 "root hair specific 17" 0.740 0.773 0.620 7.5e-144
TAIR|locus:2049527567 AT2G01480 [Arabidopsis thalian 0.803 0.814 0.403 2e-86
TAIR|locus:2006852562 AT1G14970 [Arabidopsis thalian 0.753 0.770 0.416 2.4e-85
TAIR|locus:2065563638 AT2G37980 [Arabidopsis thalian 0.756 0.681 0.410 2.4e-83
TAIR|locus:504956200589 AT1G38131 [Arabidopsis thalian 0.761 0.743 0.423 2.2e-82
TAIR|locus:2174754522 AT5G64600 [Arabidopsis thalian 0.744 0.819 0.405 2.8e-82
TAIR|locus:2014869499 AT1G14020 [Arabidopsis thalian 0.666 0.767 0.452 2.5e-81
TAIR|locus:2076552512 AT3G02250 [Arabidopsis thalian 0.660 0.742 0.441 1.1e-80
TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
 Identities = 402/554 (72%), Positives = 464/554 (83%)

Query:     1 MGV-ANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQ-RRKIPWSLICGLML 58
             MGV A  WR S+    L +   Q   NGG++K   LW+WRF+++Q +R + W+ +CG ML
Sbjct:     1 MGVVAEVWRSSV---RLLTNSPQ--LNGGSHKS-ALWKWRFFSAQPKRTVMWTWVCGFML 54

Query:    59 FALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSE 118
             F+LG+ISLFTGHV S LEWYSQ+L K SL        + R +PID+WKS+YSK+++GCSE
Sbjct:    55 FSLGVISLFTGHVVSHLEWYSQQLSKRSLLD------MSRREPIDVWKSKYSKFFYGCSE 108

Query:   119 RRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD 178
             R + F  A  E+SSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD
Sbjct:   109 RGRNFLPAVQEQSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD 168

Query:   179 DSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPI 238
             DSDF++IFDV+ FISSLAKDVTIVKRVPD+VMR+MEKPPYT RVPRKST EYYLDQVLPI
Sbjct:   169 DSDFSDIFDVNWFISSLAKDVTIVKRVPDRVMRAMEKPPYTTRVPRKSTLEYYLDQVLPI 228

Query:   239 LLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRF 298
             L RR V+QLTKFDYRLANDLDE++QK+RCRVNYHALRFTK I+ +G K+V RMR MAKRF
Sbjct:   229 LTRRHVLQLTKFDYRLANDLDEDMQKLRCRVNYHALRFTKRIQSVGMKVVKRMRKMAKRF 288

Query:   299 IAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEV 358
             IAVHLRFEPDMLAFSGC +GGG+KER EL EIRKRW TLPDL P  ERKRGKCPLTPHEV
Sbjct:   289 IAVHLRFEPDMLAFSGCDFGGGEKERAELAEIRKRWDTLPDLDPLEERKRGKCPLTPHEV 348

Query:   359 GLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRL 418
             GLMLRALGF NDT++YVASGEIYGGE+TL+PLRELFPNFYTKEMLA++ELKP L +SSRL
Sbjct:   349 GLMLRALGFTNDTYIYVASGEIYGGEKTLKPLRELFPNFYTKEMLANDELKPLLPYSSRL 408

Query:   419 AAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDT 478
             AAIDYIV DESDVF+TNNNGNMAKILAGRRRYMGHKRTIRPNAK+LSALFM + +M+W T
Sbjct:   409 AAIDYIVSDESDVFITNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSALFMDREKMEWQT 468

Query:   479 FARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPV------TDEEHKD--RDHHLD 530
             FA+KVKSCQRGFMG+P+E KPGRGEFHE+P SCIC++P       TD+E +D   ++H  
Sbjct:   469 FAKKVKSCQRGFMGDPDEFKPGRGEFHEYPQSCICQRPFSYDKTSTDDEEEDMSEENHNS 528

Query:   531 KASAHLIAKLQSKD 544
              +  H+   L S D
Sbjct:   529 TSPGHV--HLSSAD 540


GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956200 AT1G38131 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_290052
hypothetical protein (522 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-168
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 1e-120
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 6e-13
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  477 bits (1231), Expect = e-168
 Identities = 181/324 (55%), Positives = 221/324 (68%), Gaps = 36/324 (11%)

Query: 135 YLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISS 194
           YLL++A+GGLNQQR+ I DAV VAR+LNATLV+PELD +S W D S F +I+DVDHFI S
Sbjct: 1   YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60

Query: 195 LAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRL 254
           L  DV +VK++P + + S +      RVP +S+P YYL++VLP+L +  V++L  FD RL
Sbjct: 61  LKDDVRVVKKLP-EELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRL 119

Query: 255 AND-LDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFS 313
           AND L  E+Q++RCRVN+HALRF   IEELG KLV R+R     F+A+HLRFE DMLAFS
Sbjct: 120 ANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFS 179

Query: 314 GCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHL 373
           GC                                 GKCPLTP EVGL+LRALGF   T +
Sbjct: 180 GC---------------------------------GKCPLTPEEVGLLLRALGFPRSTRI 206

Query: 374 YVASGEIYGGEETLRPLRELFPNFYTKEMLA-DEELKPFLQFSSRLAAIDYIVCDESDVF 432
           Y+A+GEIYGGE  L PLR +FPN YTKE LA  EEL PF   SSRLAA+DYIVC ESDVF
Sbjct: 207 YLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVF 266

Query: 433 VTNNNGNMAKILAGRRRYMGHKRT 456
           V    GN AK +AG RRY+GH++T
Sbjct: 267 VPTYGGNFAKAVAGHRRYLGHRKT 290


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 575
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 97.72
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 95.49
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=1.9e-56  Score=451.81  Aligned_cols=298  Identities=40%  Similarity=0.667  Sum_probs=207.9

Q ss_pred             eCCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCcccCCCC-----CcccccHHHHHHHhccccceeccCchhHHhhcC
Q 008165          140 ASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSD-----FANIFDVDHFISSLAKDVTIVKRVPDKVMRSME  214 (575)
Q Consensus       140 ~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~WkD~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~  214 (575)
                      +.||+||||.++++||++|++||+|||||.+...+.|++.+.     |+++||+++|+++++.+|.+.+.+|........
T Consensus         6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~   85 (351)
T PF10250_consen    6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR   85 (351)
T ss_dssp             -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence            889999999999999999999999999999999999999987     999999999999999999999999866543211


Q ss_pred             ----------------------------CCCceecCCC-CCChhHHHhhhhhhhhhc------ceEEEeccccccccC-C
Q 008165          215 ----------------------------KPPYTMRVPR-KSTPEYYLDQVLPILLRR------RVVQLTKFDYRLAND-L  258 (575)
Q Consensus       215 ----------------------------~~~~~~~vp~-~s~~~yY~e~ilP~L~k~------~VI~l~~~d~RLa~~-l  258 (575)
                                                  +......... ++.+.+|.++++|.+.++      +|+.|.++..++.++ .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  165 (351)
T PF10250_consen   86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL  165 (351)
T ss_dssp             EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred             hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence                                        1112233333 788899999999999887      999999999999977 8


Q ss_pred             chHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCC
Q 008165          259 DEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLP  338 (575)
Q Consensus       259 P~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~  338 (575)
                      +.++||        +|+|+++|+++|++++++|+..+++|||+|||+|+||  +++|.+++   ++..|..+|..  +.+
T Consensus       166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~  230 (351)
T PF10250_consen  166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKK  230 (351)
T ss_dssp             GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred             CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccc
Confidence            899988        9999999999999999999955689999999999999  88999954   67777777765  234


Q ss_pred             CCCchhhccCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCccccccchHhhCCCccccccCCh-hhccCCcCcccc
Q 008165          339 DLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLAD-EELKPFLQFSSR  417 (575)
Q Consensus       339 ~i~~~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYLAsgeiyGG~~~L~pL~~~FPnl~tKe~La~-eEL~pf~~~sS~  417 (575)
                      .+++...+..+.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+.+.+ +|+++|.+  ++
T Consensus       231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~  308 (351)
T PF10250_consen  231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQ  308 (351)
T ss_dssp             GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S-
T ss_pred             cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cc
Confidence            5677788889999999999999999999999999999999999999999999999999999999998 99999986  89


Q ss_pred             hhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccCCc
Q 008165          418 LAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHK  454 (575)
Q Consensus       418 lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~  454 (575)
                      +|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus       309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence            9999999999999999999999999999999999954



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 Back     alignment and structure
 Score = 52.8 bits (126), Expect = 1e-07
 Identities = 54/351 (15%), Positives = 104/351 (29%), Gaps = 67/351 (19%)

Query: 129 ERSSNGYLLIA-ASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDS-DFANIF 186
               NGY++     G    Q       +  A+ L+ TLV+P      + +     F  +F
Sbjct: 4   ATDPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLF 63

Query: 187 DVDH------------FISSLAKDV-TIVKRV--PDKVMRSMEKPPYTMRVPRKS----- 226
            V              F   +   V    KR        +++           K      
Sbjct: 64  QVGTVAKYTRVVTMQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFG 123

Query: 227 -----------TPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHA-- 273
                        EY+ D      L +   +  K+  +  ++    L        + +  
Sbjct: 124 PYWDQIDVSFVGDEYFGDIPGGFDLNQMGSR-KKWLEKFPSEEYPVLAFSSAPAPFPSKG 182

Query: 274 --------LRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERY 325
                   LR++  I E  +K      ++AK F+AVHLR + D +    C       +  
Sbjct: 183 KVWSIQKYLRWSSRITEQAKK--FISANLAKPFVAVHLRNDADWV--RVC----EHIDTT 234

Query: 326 ELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFAND-THLYVASGEIYGGE 384
               +      L +    G   +  C  +  ++   +     +     ++VAS       
Sbjct: 235 TNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVAS------- 287

Query: 385 ETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTN 435
           +    + E+       E L   E++   +           +   +D+FV N
Sbjct: 288 DKDHMIDEI------NEALKPYEIEAH-RQEPDDMYTSLAIMGRADLFVGN 331


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query575
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.56
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 99.11
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 97.44
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 97.12
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.56  E-value=1.7e-14  Score=149.93  Aligned_cols=295  Identities=18%  Similarity=0.229  Sum_probs=169.6

Q ss_pred             CCCcEEEEEe-CC-CchhhHhhHhhHHHHHHHhcCc----EEecccCCCCcccCC------CCCcccccHHHHHHHhccc
Q 008165          131 SSNGYLLIAA-SG-GLNQQRTGITDAVVVARILNAT----LVVPELDHHSYWKDD------SDFANIFDVDHFISSLAKD  198 (575)
Q Consensus       131 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LViP~Ld~~s~WkD~------S~F~DIFDvdhFI~sL~~d  198 (575)
                      ..++||+-.. .| |.|.||...-.|.++|+.||.|    ||||-...---|+-.      -.|+++||++++    +..
T Consensus        20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~   95 (408)
T 4ap5_A           20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN   95 (408)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred             cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence            5789999885 45 8999999999999999999999    999966433334432      379999999864    445


Q ss_pred             cceeccCchhHHhhcCC----------------------CCceec------------CCCCCChhHHH------------
Q 008165          199 VTIVKRVPDKVMRSMEK----------------------PPYTMR------------VPRKSTPEYYL------------  232 (575)
Q Consensus       199 VrIVk~LP~~~~~~~~~----------------------~~~~~~------------vp~~s~~~yY~------------  232 (575)
                      |+||.-  +++++....                      .....+            .-...++.|-.            
T Consensus        96 vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~  173 (408)
T 4ap5_A           96 IPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS  173 (408)
T ss_dssp             SCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred             CCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence            566531  111110000                      000000            00000111100            


Q ss_pred             -----hhhhhhhhhc---ceEEEeccccccccC-CchHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEee
Q 008165          233 -----DQVLPILLRR---RVVQLTKFDYRLAND-LDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHL  303 (575)
Q Consensus       233 -----e~ilP~L~k~---~VI~l~~~d~RLa~~-lP~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHL  303 (575)
                           ..+-|.+.+.   ..+-+..+...|++- -..+...+|     ..|+|++.|.+.|++.++..-.  ++|+++|+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~  246 (408)
T 4ap5_A          174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRI  246 (408)
T ss_dssp             ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTC
T ss_pred             EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeec
Confidence                 0112222221   112222222233322 113333332     4799999999999998887653  58999999


Q ss_pred             ccchhhhhhhcccCCCCchHhHHHHHHHh-hhccCCCCCchhhccCCCCCCCHHHHH-HHHHHcCCCCCceEEEEecccc
Q 008165          304 RFEPDMLAFSGCYYGGGDKERYELGEIRK-RWATLPDLSPEGERKRGKCPLTPHEVG-LMLRALGFANDTHLYVASGEIY  381 (575)
Q Consensus       304 RfE~DMLAfsgC~~ggg~~E~~EL~~~R~-~w~~~~~i~~~~~R~~G~CPLTPeEVg-l~LrALGf~~~T~IYLAsgeiy  381 (575)
                      |...|+...  |.......-.    .+=- +|+. .    +-......|=.+-++++ .+.+.+.=-+-+.||||+-+  
T Consensus       247 r~~~dw~~~--~~~~~~~~~~----~y~~~H~Rr-~----d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~--  313 (408)
T 4ap5_A          247 PFQEDWMKM--KVKLGSALGG----PYLGVHLRR-K----DFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA--  313 (408)
T ss_dssp             CCCSSGGGC--CCCTTCBCCE----EEEEEEECC-T----TTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC--
T ss_pred             ccchhHhhh--hcccccccCC----Ccccccccc-c----cchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC--
Confidence            999888764  4432111000    0000 1111 0    00111223422333333 33333322244589999875  


Q ss_pred             CccccccchHhhCCCccccccCChhhccCCcCcccchhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccCCcc
Q 008165          382 GGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKR  455 (575)
Q Consensus       382 GG~~~L~pL~~~FPnl~tKe~La~eEL~pf~~~sS~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k  455 (575)
                       .+..+..|++.+|.++.-..- .+++..+.  ...+|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus       314 -~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~  383 (408)
T 4ap5_A          314 -VRKEYEELKKLLPEMVRFEPT-WEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP  383 (408)
T ss_dssp             -CHHHHHHHHHHCTTEECCCCC-HHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred             -chhHHHHHHHhCCCcEEecCc-chhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence             344567899999976533221 13344432  34579999999999999999999999999999999999763



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00