Citrus Sinensis ID: 008165
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 575 | ||||||
| 255579615 | 592 | conserved hypothetical protein [Ricinus | 0.993 | 0.964 | 0.75 | 0.0 | |
| 359495962 | 572 | PREDICTED: DUF246 domain-containing prot | 0.970 | 0.975 | 0.760 | 0.0 | |
| 224071093 | 573 | predicted protein [Populus trichocarpa] | 0.973 | 0.977 | 0.739 | 0.0 | |
| 449458966 | 551 | PREDICTED: DUF246 domain-containing prot | 0.906 | 0.945 | 0.782 | 0.0 | |
| 224137852 | 522 | predicted protein [Populus trichocarpa] | 0.843 | 0.929 | 0.808 | 0.0 | |
| 356540530 | 553 | PREDICTED: DUF246 domain-containing prot | 0.892 | 0.927 | 0.771 | 0.0 | |
| 357476829 | 636 | DUF246 domain-containing protein [Medica | 0.827 | 0.748 | 0.820 | 0.0 | |
| 356495599 | 545 | PREDICTED: DUF246 domain-containing prot | 0.886 | 0.935 | 0.770 | 0.0 | |
| 147826938 | 557 | hypothetical protein VITISV_039538 [Viti | 0.944 | 0.974 | 0.719 | 0.0 | |
| 356565361 | 548 | PREDICTED: DUF246 domain-containing prot | 0.886 | 0.930 | 0.751 | 0.0 |
| >gi|255579615|ref|XP_002530648.1| conserved hypothetical protein [Ricinus communis] gi|223529781|gb|EEF31717.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/596 (75%), Positives = 491/596 (82%), Gaps = 25/596 (4%)
Query: 1 MGVANAWRFSLISANLASLHQQNGCNG--------------GTNKQYVLWRWRFYASQRR 46
MGVA AWRFSLISA+LA HQQNG + N WR QR+
Sbjct: 1 MGVAKAWRFSLISADLAPSHQQNGSHNPKRGGGGGKHYHHYHHNHSNEWWRSSATQQQRK 60
Query: 47 KIPWSLICGLMLFALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWK 106
KIPWSL+CGLMLF LGLISLFTGHVASDLEWYSQRLVK SL +L G R + IDIW
Sbjct: 61 KIPWSLVCGLMLFVLGLISLFTGHVASDLEWYSQRLVKRSL-GRLDGG---RREQIDIWD 116
Query: 107 SRYSKYYHGCSERRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV 166
S+YSK+++GCSER + F A E+SSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV
Sbjct: 117 SKYSKFFYGCSERGRNFAPAIREKSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLV 176
Query: 167 VPELDHHSYWKDDSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKS 226
VPELDHHSYWKDDSDF NIFDVD FIS LAKDVTIVKRVPDKVMR+MEKPPYTMRVPRKS
Sbjct: 177 VPELDHHSYWKDDSDFVNIFDVDWFISYLAKDVTIVKRVPDKVMRTMEKPPYTMRVPRKS 236
Query: 227 TPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEE-LQKMRCRVNYHALRFTKPIEELGQ 285
PEYYLDQVLPILLRR VVQLTKFDYRLAN+LDEE LQK+RCRVNYHALRF K I+++GQ
Sbjct: 237 PPEYYLDQVLPILLRRHVVQLTKFDYRLANNLDEEELQKLRCRVNYHALRFAKSIQDIGQ 296
Query: 286 KLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGE 345
LVM+MR M RFIAVHLRFEPDMLAFSGCYYGGG+KER+ELGEIRKRW TLPDLS E E
Sbjct: 297 GLVMKMRKMTSRFIAVHLRFEPDMLAFSGCYYGGGEKERFELGEIRKRWDTLPDLSAEEE 356
Query: 346 RKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLAD 405
R RGKCPLTPHEVGLMLRALGFANDT++YVASGEIYGGEETLRPLRELFPNFYTKEMLA+
Sbjct: 357 RARGKCPLTPHEVGLMLRALGFANDTYIYVASGEIYGGEETLRPLRELFPNFYTKEMLAN 416
Query: 406 EELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLS 465
EELKPFL FSSRLAAIDYIVCDESDVFVTNNNGNMAKILAG+RRY GHKRTIRPNAKRLS
Sbjct: 417 EELKPFLPFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGQRRYAGHKRTIRPNAKRLS 476
Query: 466 ALFMAKNQMDWDTFARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPVT-DEEHKD 524
L M +N+MDWDTFA+KVK+CQRGFMGEP+EM+PGRGEFHE+P SCICEKP + DE KD
Sbjct: 477 KLLMVRNKMDWDTFAKKVKACQRGFMGEPDEMRPGRGEFHEYPSSCICEKPFSNDESGKD 536
Query: 525 RDHHLDKASAHLIAKLQSKD-REKKGEKKF---KKKGLVE-PITSVDIEGEELFPD 575
H L + + +QSK +E G++ KK+ + E P+ D E ++ FPD
Sbjct: 537 EGHLLHQVPMNSKENVQSKYFKENPGDESLRISKKRSMEEDPVNLTDAEDDDKFPD 592
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495962|ref|XP_002267185.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] gi|297744383|emb|CBI37357.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224071093|ref|XP_002303356.1| predicted protein [Populus trichocarpa] gi|222840788|gb|EEE78335.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449458966|ref|XP_004147217.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449504948|ref|XP_004162338.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224137852|ref|XP_002326456.1| predicted protein [Populus trichocarpa] gi|222833778|gb|EEE72255.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356540530|ref|XP_003538741.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357476829|ref|XP_003608700.1| DUF246 domain-containing protein [Medicago truncatula] gi|355509755|gb|AES90897.1| DUF246 domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356495599|ref|XP_003516662.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|147826938|emb|CAN66567.1| hypothetical protein VITISV_039538 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356565361|ref|XP_003550910.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 575 | ||||||
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.921 | 0.965 | 0.725 | 4.6e-215 | |
| TAIR|locus:2014619 | 572 | AT1G76270 [Arabidopsis thalian | 0.826 | 0.830 | 0.580 | 3.5e-146 | |
| TAIR|locus:2121793 | 551 | RHS17 "root hair specific 17" | 0.740 | 0.773 | 0.620 | 7.5e-144 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.803 | 0.814 | 0.403 | 2e-86 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.753 | 0.770 | 0.416 | 2.4e-85 | |
| TAIR|locus:2065563 | 638 | AT2G37980 [Arabidopsis thalian | 0.756 | 0.681 | 0.410 | 2.4e-83 | |
| TAIR|locus:504956200 | 589 | AT1G38131 [Arabidopsis thalian | 0.761 | 0.743 | 0.423 | 2.2e-82 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.744 | 0.819 | 0.405 | 2.8e-82 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.666 | 0.767 | 0.452 | 2.5e-81 | |
| TAIR|locus:2076552 | 512 | AT3G02250 [Arabidopsis thalian | 0.660 | 0.742 | 0.441 | 1.1e-80 |
| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
Identities = 402/554 (72%), Positives = 464/554 (83%)
Query: 1 MGV-ANAWRFSLISANLASLHQQNGCNGGTNKQYVLWRWRFYASQ-RRKIPWSLICGLML 58
MGV A WR S+ L + Q NGG++K LW+WRF+++Q +R + W+ +CG ML
Sbjct: 1 MGVVAEVWRSSV---RLLTNSPQ--LNGGSHKS-ALWKWRFFSAQPKRTVMWTWVCGFML 54
Query: 59 FALGLISLFTGHVASDLEWYSQRLVKPSLYSKLKDGIVRRHQPIDIWKSRYSKYYHGCSE 118
F+LG+ISLFTGHV S LEWYSQ+L K SL + R +PID+WKS+YSK+++GCSE
Sbjct: 55 FSLGVISLFTGHVVSHLEWYSQQLSKRSLLD------MSRREPIDVWKSKYSKFFYGCSE 108
Query: 119 RRKKFPRARSERSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD 178
R + F A E+SSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD
Sbjct: 109 RGRNFLPAVQEQSSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKD 168
Query: 179 DSDFANIFDVDHFISSLAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPI 238
DSDF++IFDV+ FISSLAKDVTIVKRVPD+VMR+MEKPPYT RVPRKST EYYLDQVLPI
Sbjct: 169 DSDFSDIFDVNWFISSLAKDVTIVKRVPDRVMRAMEKPPYTTRVPRKSTLEYYLDQVLPI 228
Query: 239 LLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRF 298
L RR V+QLTKFDYRLANDLDE++QK+RCRVNYHALRFTK I+ +G K+V RMR MAKRF
Sbjct: 229 LTRRHVLQLTKFDYRLANDLDEDMQKLRCRVNYHALRFTKRIQSVGMKVVKRMRKMAKRF 288
Query: 299 IAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEV 358
IAVHLRFEPDMLAFSGC +GGG+KER EL EIRKRW TLPDL P ERKRGKCPLTPHEV
Sbjct: 289 IAVHLRFEPDMLAFSGCDFGGGEKERAELAEIRKRWDTLPDLDPLEERKRGKCPLTPHEV 348
Query: 359 GLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRL 418
GLMLRALGF NDT++YVASGEIYGGE+TL+PLRELFPNFYTKEMLA++ELKP L +SSRL
Sbjct: 349 GLMLRALGFTNDTYIYVASGEIYGGEKTLKPLRELFPNFYTKEMLANDELKPLLPYSSRL 408
Query: 419 AAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKRTIRPNAKRLSALFMAKNQMDWDT 478
AAIDYIV DESDVF+TNNNGNMAKILAGRRRYMGHKRTIRPNAK+LSALFM + +M+W T
Sbjct: 409 AAIDYIVSDESDVFITNNNGNMAKILAGRRRYMGHKRTIRPNAKKLSALFMDREKMEWQT 468
Query: 479 FARKVKSCQRGFMGEPEEMKPGRGEFHEFPYSCICEKPV------TDEEHKD--RDHHLD 530
FA+KVKSCQRGFMG+P+E KPGRGEFHE+P SCIC++P TD+E +D ++H
Sbjct: 469 FAKKVKSCQRGFMGDPDEFKPGRGEFHEYPQSCICQRPFSYDKTSTDDEEEDMSEENHNS 528
Query: 531 KASAHLIAKLQSKD 544
+ H+ L S D
Sbjct: 529 TSPGHV--HLSSAD 540
|
|
| TAIR|locus:2014619 AT1G76270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121793 RHS17 "root hair specific 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:504956200 AT1G38131 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_290052 | hypothetical protein (522 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 575 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-168 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-120 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 6e-13 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 477 bits (1231), Expect = e-168
Identities = 181/324 (55%), Positives = 221/324 (68%), Gaps = 36/324 (11%)
Query: 135 YLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSDFANIFDVDHFISS 194
YLL++A+GGLNQQR+ I DAV VAR+LNATLV+PELD +S W D S F +I+DVDHFI S
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 195 LAKDVTIVKRVPDKVMRSMEKPPYTMRVPRKSTPEYYLDQVLPILLRRRVVQLTKFDYRL 254
L DV +VK++P + + S + RVP +S+P YYL++VLP+L + V++L FD RL
Sbjct: 61 LKDDVRVVKKLP-EELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRL 119
Query: 255 AND-LDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFS 313
AND L E+Q++RCRVN+HALRF IEELG KLV R+R F+A+HLRFE DMLAFS
Sbjct: 120 ANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFS 179
Query: 314 GCYYGGGDKERYELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHL 373
GC GKCPLTP EVGL+LRALGF T +
Sbjct: 180 GC---------------------------------GKCPLTPEEVGLLLRALGFPRSTRI 206
Query: 374 YVASGEIYGGEETLRPLRELFPNFYTKEMLA-DEELKPFLQFSSRLAAIDYIVCDESDVF 432
Y+A+GEIYGGE L PLR +FPN YTKE LA EEL PF SSRLAA+DYIVC ESDVF
Sbjct: 207 YLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVF 266
Query: 433 VTNNNGNMAKILAGRRRYMGHKRT 456
V GN AK +AG RRY+GH++T
Sbjct: 267 VPTYGGNFAKAVAGHRRYLGHRKT 290
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 575 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.72 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 95.49 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=451.81 Aligned_cols=298 Identities=40% Similarity=0.667 Sum_probs=207.9
Q ss_pred eCCCchhhHhhHhhHHHHHHHhcCcEEecccCCCCcccCCCC-----CcccccHHHHHHHhccccceeccCchhHHhhcC
Q 008165 140 ASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDSD-----FANIFDVDHFISSLAKDVTIVKRVPDKVMRSME 214 (575)
Q Consensus 140 ~nGGLNQqR~~IcDaVaVARiLNATLViP~Ld~~s~WkD~S~-----F~DIFDvdhFI~sL~~dVrIVk~LP~~~~~~~~ 214 (575)
+.||+||||.++++||++|++||+|||||.+...+.|++.+. |+++||+++|+++++.+|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999987 999999999999999999999999866543211
Q ss_pred ----------------------------CCCceecCCC-CCChhHHHhhhhhhhhhc------ceEEEeccccccccC-C
Q 008165 215 ----------------------------KPPYTMRVPR-KSTPEYYLDQVLPILLRR------RVVQLTKFDYRLAND-L 258 (575)
Q Consensus 215 ----------------------------~~~~~~~vp~-~s~~~yY~e~ilP~L~k~------~VI~l~~~d~RLa~~-l 258 (575)
+......... ++.+.+|.++++|.+.++ +|+.|.++..++.++ .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 1112233333 788899999999999887 999999999999977 8
Q ss_pred chHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEeeccchhhhhhhcccCCCCchHhHHHHHHHhhhccCC
Q 008165 259 DEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERYELGEIRKRWATLP 338 (575)
Q Consensus 259 P~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHLRfE~DMLAfsgC~~ggg~~E~~EL~~~R~~w~~~~ 338 (575)
+.++|| +|+|+++|+++|++++++|+..+++|||+|||+|+|| +++|.+++ ++..|..+|.. +.+
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~--~~~ 230 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW--GKK 230 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH---GG
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh--ccc
Confidence 899988 9999999999999999999955689999999999999 88999954 67777777765 234
Q ss_pred CCCchhhccCCCCCCCHHHHHHHHHHcCCCCCceEEEEeccccCccccccchHhhCCCccccccCCh-hhccCCcCcccc
Q 008165 339 DLSPEGERKRGKCPLTPHEVGLMLRALGFANDTHLYVASGEIYGGEETLRPLRELFPNFYTKEMLAD-EELKPFLQFSSR 417 (575)
Q Consensus 339 ~i~~~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYLAsgeiyGG~~~L~pL~~~FPnl~tKe~La~-eEL~pf~~~sS~ 417 (575)
.+++...+..+.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|++.||++++|+.+.+ +|+++|.+ ++
T Consensus 231 ~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~ 308 (351)
T PF10250_consen 231 SINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQ 308 (351)
T ss_dssp GTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S-
T ss_pred cccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cc
Confidence 5677788889999999999999999999999999999999999999999999999999999999998 99999986 89
Q ss_pred hhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccCCc
Q 008165 418 LAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHK 454 (575)
Q Consensus 418 lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 454 (575)
+|+||++||++||+||+|..++|+.+|+++|.|.|+.
T Consensus 309 ~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 309 LAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp -HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred hhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 9999999999999999999999999999999999954
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 575 | |||
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 |
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 54/351 (15%), Positives = 104/351 (29%), Gaps = 67/351 (19%)
Query: 129 ERSSNGYLLIA-ASGGLNQQRTGITDAVVVARILNATLVVPELDHHSYWKDDS-DFANIF 186
NGY++ G Q + A+ L+ TLV+P + + F +F
Sbjct: 4 ATDPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPETKMIPFEFLF 63
Query: 187 DVDH------------FISSLAKDV-TIVKRV--PDKVMRSMEKPPYTMRVPRKS----- 226
V F + V KR +++ K
Sbjct: 64 QVGTVAKYTRVVTMQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFG 123
Query: 227 -----------TPEYYLDQVLPILLRRRVVQLTKFDYRLANDLDEELQKMRCRVNYHA-- 273
EY+ D L + + K+ + ++ L + +
Sbjct: 124 PYWDQIDVSFVGDEYFGDIPGGFDLNQMGSR-KKWLEKFPSEEYPVLAFSSAPAPFPSKG 182
Query: 274 --------LRFTKPIEELGQKLVMRMRSMAKRFIAVHLRFEPDMLAFSGCYYGGGDKERY 325
LR++ I E +K ++AK F+AVHLR + D + C +
Sbjct: 183 KVWSIQKYLRWSSRITEQAKK--FISANLAKPFVAVHLRNDADWV--RVC----EHIDTT 234
Query: 326 ELGEIRKRWATLPDLSPEGERKRGKCPLTPHEVGLMLRALGFAND-THLYVASGEIYGGE 384
+ L + G + C + ++ + + ++VAS
Sbjct: 235 TNRPLFASEQCLGEGHHLGTLTKEICSPSKQQILEQIVEKVGSIGAKSVFVAS------- 287
Query: 385 ETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTN 435
+ + E+ E L E++ + + +D+FV N
Sbjct: 288 DKDHMIDEI------NEALKPYEIEAH-RQEPDDMYTSLAIMGRADLFVGN 331
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 575 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.56 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.11 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 97.44 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.12 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=149.93 Aligned_cols=295 Identities=18% Similarity=0.229 Sum_probs=169.6
Q ss_pred CCCcEEEEEe-CC-CchhhHhhHhhHHHHHHHhcCc----EEecccCCCCcccCC------CCCcccccHHHHHHHhccc
Q 008165 131 SSNGYLLIAA-SG-GLNQQRTGITDAVVVARILNAT----LVVPELDHHSYWKDD------SDFANIFDVDHFISSLAKD 198 (575)
Q Consensus 131 ~snGYL~V~~-nG-GLNQqR~~IcDaVaVARiLNAT----LViP~Ld~~s~WkD~------S~F~DIFDvdhFI~sL~~d 198 (575)
..++||+-.. .| |.|.||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++ +..
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~~ 95 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NKN 95 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HTT
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hhh
Confidence 5789999885 45 8999999999999999999999 999966433334432 379999999864 445
Q ss_pred cceeccCchhHHhhcCC----------------------CCceec------------CCCCCChhHHH------------
Q 008165 199 VTIVKRVPDKVMRSMEK----------------------PPYTMR------------VPRKSTPEYYL------------ 232 (575)
Q Consensus 199 VrIVk~LP~~~~~~~~~----------------------~~~~~~------------vp~~s~~~yY~------------ 232 (575)
|+||.- +++++.... .....+ .-...++.|-.
T Consensus 96 vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 96 IPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp SCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred CCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 566531 111110000 000000 00000111100
Q ss_pred -----hhhhhhhhhc---ceEEEeccccccccC-CchHhhhhheeeeccccccchhHHHHHHHHHHHHHhcCCCceEEee
Q 008165 233 -----DQVLPILLRR---RVVQLTKFDYRLAND-LDEELQKMRCRVNYHALRFTKPIEELGQKLVMRMRSMAKRFIAVHL 303 (575)
Q Consensus 233 -----e~ilP~L~k~---~VI~l~~~d~RLa~~-lP~diQrLRCrvnF~ALrF~p~I~~Lg~~LV~RLR~~~~~fiALHL 303 (575)
..+-|.+.+. ..+-+..+...|++- -..+...+| ..|+|++.|.+.|++.++..-. ++|+++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~ 246 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLN--STDDADRI 246 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTC
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhC--cccceeec
Confidence 0112222221 112222222233322 113333332 4799999999999998887653 58999999
Q ss_pred ccchhhhhhhcccCCCCchHhHHHHHHHh-hhccCCCCCchhhccCCCCCCCHHHHH-HHHHHcCCCCCceEEEEecccc
Q 008165 304 RFEPDMLAFSGCYYGGGDKERYELGEIRK-RWATLPDLSPEGERKRGKCPLTPHEVG-LMLRALGFANDTHLYVASGEIY 381 (575)
Q Consensus 304 RfE~DMLAfsgC~~ggg~~E~~EL~~~R~-~w~~~~~i~~~~~R~~G~CPLTPeEVg-l~LrALGf~~~T~IYLAsgeiy 381 (575)
|...|+... |.......-. .+=- +|+. . +-......|=.+-++++ .+.+.+.=-+-+.||||+-+
T Consensus 247 r~~~dw~~~--~~~~~~~~~~----~y~~~H~Rr-~----d~~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~-- 313 (408)
T 4ap5_A 247 PFQEDWMKM--KVKLGSALGG----PYLGVHLRR-K----DFIWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA-- 313 (408)
T ss_dssp CCCSSGGGC--CCCTTCBCCE----EEEEEEECC-T----TTTTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC--
T ss_pred ccchhHhhh--hcccccccCC----Ccccccccc-c----cchhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC--
Confidence 999888764 4432111000 0000 1111 0 00111223422333333 33333322244589999875
Q ss_pred CccccccchHhhCCCccccccCChhhccCCcCcccchhhhhhhhhcCCceeeecCCCcHHHHHhhhhcccCCcc
Q 008165 382 GGEETLRPLRELFPNFYTKEMLADEELKPFLQFSSRLAAIDYIVCDESDVFVTNNNGNMAKILAGRRRYMGHKR 455 (575)
Q Consensus 382 GG~~~L~pL~~~FPnl~tKe~La~eEL~pf~~~sS~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~k 455 (575)
.+..+..|++.+|.++.-..- .+++..+. ...+|.||-+||.+||+||+|..++|+..|.=.|.+.|+..
T Consensus 314 -~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~--d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~~ 383 (408)
T 4ap5_A 314 -VRKEYEELKKLLPEMVRFEPT-WEELELYK--DGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLDP 383 (408)
T ss_dssp -CHHHHHHHHHHCTTEECCCCC-HHHHHHHH--HHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBCG
T ss_pred -chhHHHHHHHhCCCcEEecCc-chhhhccC--cchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCCC
Confidence 344567899999976533221 13344432 34579999999999999999999999999999999999763
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00