Citrus Sinensis ID: 008181

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY
cccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHEEEEcccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEccccccccccccccccccccEEEccccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccc
cHHHHHHHHHHcccccHHcccccHHHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEHccccccccccccccccccccc
MYRIASKLassisspaakkgvygrvlcnrnyvakdinfGVGARAAMLQGVSEVAEAVKvtmgpkgrnVIIEksignpkvtkdgvTVARSIEFRDKAKDVGANLVKQVAGAtnkaagdgttCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKlargyispyfvtdpktqkcelenpliliydkkisdmNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHagvkvcaikapgfgdnrranlddlailtggeiisedrgltlDKVKEEMLGTAKKVTVSVDDTivlhgggdkkLIEERCEEVCQTamgksaatFDREKAQERLSKLTGGVAVFKvggasevevgerKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENlktenedqrRGIHIIQNalkaptltiasnagfdgsTIIGKlleqddvnfgfdaakgeYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLvnsddknkppsrvpnmdglgy
myriasklassisspaakkgvygrVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVkvtmgpkgrnviieksignpkvtkdgvTVARSIefrdkakdvgANLVKQVAgatnkaagdgtTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEitqvatisangEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIkapgfgdnrrANLDDLAILtggeiisedrgltlDKVKEEMLGtakkvtvsvddtivlhgggdkkliEERCEEVCQTAmgksaatfdrEKAQERLskltggvavfkvggasevevgerkdrVTDALNATRaaveegivpgGGVALLYATKALENLktenedqrrGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLfttteatvlvnsddknkppsrvpnmdglgy
MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY
******************KGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMIS***EITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAM*****************KLTGGVAVFKVGGASEVEVGE*KDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLV********************
*****************************NYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKS********EEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL*********************
************SSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY
*YR***KLASSISS******VYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSD*****************
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
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MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKAxxxxxxxxxxxxxxxxxxxxxLKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query575 2.2.26 [Sep-21-2011]
Q93ZM7572 Chaperonin CPN60-like 2, yes no 0.993 0.998 0.794 0.0
P29197577 Chaperonin CPN60, mitocho no no 0.961 0.958 0.705 0.0
Q43298576 Chaperonin CPN60-2, mitoc N/A no 0.996 0.994 0.673 0.0
Q05046575 Chaperonin CPN60-2, mitoc N/A no 0.977 0.977 0.683 0.0
P29185577 Chaperonin CPN60-1, mitoc N/A no 0.961 0.958 0.689 0.0
Q05045575 Chaperonin CPN60-1, mitoc N/A no 0.977 0.977 0.676 0.0
Q8L7B5585 Chaperonin CPN60-like 1, no no 0.96 0.943 0.687 0.0
P35480587 Chaperonin CPN60, mitocho N/A no 0.958 0.938 0.655 0.0
B6IU98546 60 kDa chaperonin OS=Rhod yes no 0.904 0.952 0.581 1e-171
A5EG60540 60 kDa chaperonin 3 OS=Br yes no 0.933 0.994 0.571 1e-170
>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 Back     alignment and function desciption
 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/574 (79%), Positives = 519/574 (90%), Gaps = 3/574 (0%)

Query: 1   MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVT 60
           MYR+ SKL+SSI S  ++K V GR++ +RNY AKDI+FG+GARAAMLQGVSEVAEAVKVT
Sbjct: 1   MYRVLSKLSSSIGSSTSRKLVSGRIISSRNYAAKDISFGIGARAAMLQGVSEVAEAVKVT 60

Query: 61  MGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTT 120
           MGPKGRNVIIE S G PK+TKDGVTVA+SI F+ KAK++GA LVKQVA ATNK AGDGTT
Sbjct: 61  MGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTT 120

Query: 121 CATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATI 180
           CATVLTQAIL EGCKSVAAGVNVMDLR GI MAI AV+SDLKSRA MISTPEEITQVATI
Sbjct: 121 CATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMISTPEEITQVATI 180

Query: 181 SANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKT 240
           SANGEREIGEL+ARAMEKVGKEGVITV DGNT+ NELEVV GMKLARGYISPYF+TD KT
Sbjct: 181 SANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKT 240

Query: 241 QKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAG 300
           QKCELENP+ILI++KKISD+NSL+ +LE AV+ +R LLIVAEDVE DALAMLILNKHH G
Sbjct: 241 QKCELENPIILIHEKKISDINSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGG 300

Query: 301 VKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDT 360
           +KVCAIKAPGFGDNR+A+LDDLA+LTG E+ISE+RGL+L+K++ E+LGTAKKVTV+ DDT
Sbjct: 301 LKVCAIKAPGFGDNRKASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTVTRDDT 360

Query: 361 IVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEV 420
           I+LHGGGDKKLIEERCEE+ ++A  KS +TFD+EK QERLSKL+GGVAVFKVGGASE EV
Sbjct: 361 IILHGGGDKKLIEERCEEL-RSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEV 419

Query: 421 GERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKA 480
           GERKDRVTDALNATRAAVEEGI+PGGGVALLYATKAL+NL+TENEDQRRG+ I+QNALKA
Sbjct: 420 GERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKA 479

Query: 481 PTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA 540
           P  TIA+NAG+DGS ++GKLLEQDD NFGFDAAKG+YVDMVKAGIIDP+KV+RTAL DAA
Sbjct: 480 PAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAA 539

Query: 541 SVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLG 574
           SVSLL TTTEA+VLV +D+    P+ VP+M  +G
Sbjct: 540 SVSLLLTTTEASVLVKADENT--PNHVPDMASMG 571
Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Arabidopsis thaliana (taxid: 3702)
>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2 Back     alignment and function description
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1 Back     alignment and function description
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1 Back     alignment and function description
>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2 Back     alignment and function description
>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1 Back     alignment and function description
>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|B6IU98|CH60_RHOCS 60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1 Back     alignment and function description
>sp|A5EG60|CH603_BRASB 60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
255572941573 chaperonin-60kD, ch60, putative [Ricinus 0.996 1.0 0.819 0.0
356526013574 PREDICTED: chaperonin CPN60-like 2, mito 0.994 0.996 0.811 0.0
359482518 1753 PREDICTED: uncharacterized protein LOC10 0.994 0.326 0.815 0.0
147856500579 hypothetical protein VITISV_031740 [Viti 0.979 0.972 0.783 0.0
18400195572 chaperonin CPN60-like 2 [Arabidopsis tha 0.993 0.998 0.794 0.0
297834222572 hypothetical protein ARALYDRAFT_478789 [ 0.993 0.998 0.792 0.0
357513617576 Chaperonin CPN60-like protein [Medicago 0.954 0.953 0.814 0.0
449529216 842 PREDICTED: LOW QUALITY PROTEIN: chaperon 0.991 0.676 0.779 0.0
297743087565 unnamed protein product [Vitis vinifera] 0.979 0.996 0.776 0.0
356522190 772 PREDICTED: chaperonin CPN60-like 2, mito 0.907 0.676 0.814 0.0
>gi|255572941|ref|XP_002527401.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223533211|gb|EEF34967.1| chaperonin-60kD, ch60, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/575 (81%), Positives = 529/575 (92%), Gaps = 2/575 (0%)

Query: 1   MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVT 60
           MYRIAS+LASS  S  +KK VYG+++C+R+YVAKDI+FGVGARAAMLQG++EVAEAVKVT
Sbjct: 1   MYRIASRLASSFGSSPSKKLVYGQLICSRSYVAKDISFGVGARAAMLQGINEVAEAVKVT 60

Query: 61  MGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTT 120
           MGPKGRNVIIEKS G PKVTKDGVTVA+SI+F++ AK++GA+LVKQVA ATN AAGDGTT
Sbjct: 61  MGPKGRNVIIEKSHGGPKVTKDGVTVAKSIKFKENAKNIGADLVKQVANATNTAAGDGTT 120

Query: 121 CATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATI 180
           CATVLTQAILTEGCKSVAAGVNVMDLR+GI MAIDAV+SDLK  A MISTPEEITQVATI
Sbjct: 121 CATVLTQAILTEGCKSVAAGVNVMDLRTGINMAIDAVVSDLKKSALMISTPEEITQVATI 180

Query: 181 SANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKT 240
           SANGEREIG+L+ARAMEKVGKEGVITV DGNT+ NELEVV GMKLARGYISPYF+TD KT
Sbjct: 181 SANGEREIGDLIARAMEKVGKEGVITVADGNTLENELEVVEGMKLARGYISPYFITDQKT 240

Query: 241 QKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAG 300
           QKCELENP ILIY+KKISDMNSLV +LELAV KNR+LL+VAEDVE ++LAMLILNKHHAG
Sbjct: 241 QKCELENPFILIYEKKISDMNSLVRILELAVNKNRSLLVVAEDVESESLAMLILNKHHAG 300

Query: 301 VKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDT 360
           VKVCAIKAPGFG+NR+ANLDDLAILTGGE+IS+DRGLTLDKV+ EMLGTAKKVTVS+DDT
Sbjct: 301 VKVCAIKAPGFGENRKANLDDLAILTGGEVISDDRGLTLDKVQIEMLGTAKKVTVSLDDT 360

Query: 361 IVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEV 420
           IVLHGGGDKKLIEERCEE+ +TAM KS A FD+EKAQERLSKL+GGVAVFKVGG SE EV
Sbjct: 361 IVLHGGGDKKLIEERCEEL-RTAMDKSTAMFDKEKAQERLSKLSGGVAVFKVGGVSEAEV 419

Query: 421 GERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKA 480
           GERKDRVTDALNATRAAVEEGIVPGGGVALLYATKAL++L+ +NEDQ+RGI IIQNALKA
Sbjct: 420 GERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALDDLQAQNEDQKRGIEIIQNALKA 479

Query: 481 PTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA 540
           PT TI SNAGF+   ++GKLLEQDD N G+DAAKGE+V+MV+AGIIDPLKV+RTAL DAA
Sbjct: 480 PTSTIVSNAGFNAPVVLGKLLEQDDHNLGYDAAKGEFVNMVQAGIIDPLKVIRTALVDAA 539

Query: 541 SVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY 575
           SVSLL TTTEA V+ N ++K KPPSR+P+MD + Y
Sbjct: 540 SVSLLLTTTEAAVIDNPNEK-KPPSRMPDMDAMDY 573

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356526013|ref|XP_003531614.1| PREDICTED: chaperonin CPN60-like 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856500|emb|CAN78641.1| hypothetical protein VITISV_031740 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18400195|ref|NP_566466.1| chaperonin CPN60-like 2 [Arabidopsis thaliana] gi|85718628|sp|Q93ZM7.2|CH60C_ARATH RecName: Full=Chaperonin CPN60-like 2, mitochondrial; AltName: Full=HSP60-like 2; Flags: Precursor gi|9294610|dbj|BAB02911.1| chaperonin; similar to GroEL protein [Arabidopsis thaliana] gi|20453166|gb|AAM19824.1| AT3g13860/MCP4_7 [Arabidopsis thaliana] gi|53850565|gb|AAU95459.1| At3g13860 [Arabidopsis thaliana] gi|332641906|gb|AEE75427.1| chaperonin CPN60-like 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834222|ref|XP_002884993.1| hypothetical protein ARALYDRAFT_478789 [Arabidopsis lyrata subsp. lyrata] gi|297330833|gb|EFH61252.1| hypothetical protein ARALYDRAFT_478789 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357513617|ref|XP_003627097.1| Chaperonin CPN60-like protein [Medicago truncatula] gi|355521119|gb|AET01573.1| Chaperonin CPN60-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449529216|ref|XP_004171597.1| PREDICTED: LOW QUALITY PROTEIN: chaperonin CPN60-like 2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297743087|emb|CBI35954.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522190|ref|XP_003529730.1| PREDICTED: chaperonin CPN60-like 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query575
TAIR|locus:2087959572 HSP60-3A "heat shock protein 6 0.993 0.998 0.794 2e-239
TAIR|locus:2076081577 HSP60 "heat shock protein 60" 0.996 0.993 0.688 3e-204
TAIR|locus:2046590585 HSP60-2 "heat shock protein 60 0.996 0.979 0.668 2.9e-199
DICTYBASE|DDB_G0288181556 hspA "chaperonin 60" [Dictyost 0.939 0.971 0.555 2.6e-157
UNIPROTKB|G4NAR5589 MGG_03165 "Heat shock protein 0.975 0.952 0.528 4.5e-153
GENEDB_PFALCIPARUM|PF10_0153580 PF10_0153 "hsp60" [Plasmodium 0.986 0.977 0.515 7.4e-153
UNIPROTKB|Q8IJN9580 PF10_0153 "Heat shock protein 0.986 0.977 0.515 7.4e-153
ASPGD|ASPL0000003680588 AN6089 [Emericella nidulans (t 0.996 0.974 0.515 3.2e-152
CGD|CAL0001744566 HSP60 [Candida albicans (taxid 0.947 0.962 0.532 3.8e-149
UNIPROTKB|O74261566 HSP60 "Heat shock protein 60, 0.947 0.962 0.532 3.8e-149
TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2308 (817.5 bits), Expect = 2.0e-239, P = 2.0e-239
 Identities = 456/574 (79%), Positives = 519/574 (90%)

Query:     1 MYRIASKLASSISSPAAKKGVYGRVLCNRNYVAKDINFGVGARAAMLQGVSEVAEAVKVT 60
             MYR+ SKL+SSI S  ++K V GR++ +RNY AKDI+FG+GARAAMLQGVSEVAEAVKVT
Sbjct:     1 MYRVLSKLSSSIGSSTSRKLVSGRIISSRNYAAKDISFGIGARAAMLQGVSEVAEAVKVT 60

Query:    61 MGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGTT 120
             MGPKGRNVIIE S G PK+TKDGVTVA+SI F+ KAK++GA LVKQVA ATNK AGDGTT
Sbjct:    61 MGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTT 120

Query:   121 CATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATI 180
             CATVLTQAIL EGCKSVAAGVNVMDLR GI MAI AV+SDLKSRA MISTPEEITQVATI
Sbjct:   121 CATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSDLKSRAVMISTPEEITQVATI 180

Query:   181 SANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKT 240
             SANGEREIGEL+ARAMEKVGKEGVITV DGNT+ NELEVV GMKLARGYISPYF+TD KT
Sbjct:   181 SANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLARGYISPYFITDEKT 240

Query:   241 QKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLIVAEDVERDALAMLILNKHHAG 300
             QKCELENP+ILI++KKISD+NSL+ +LE AV+ +R LLIVAEDVE DALAMLILNKHH G
Sbjct:   241 QKCELENPIILIHEKKISDINSLLKVLEAAVKSSRPLLIVAEDVESDALAMLILNKHHGG 300

Query:   301 VKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDDT 360
             +KVCAIKAPGFGDNR+A+LDDLA+LTG E+ISE+RGL+L+K++ E+LGTAKKVTV+ DDT
Sbjct:   301 LKVCAIKAPGFGDNRKASLDDLAVLTGAEVISEERGLSLEKIRPELLGTAKKVTVTRDDT 360

Query:   361 IVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEV 420
             I+LHGGGDKKLIEERCEE+ ++A  KS +TFD+EK QERLSKL+GGVAVFKVGGASE EV
Sbjct:   361 IILHGGGDKKLIEERCEEL-RSANEKSTSTFDQEKTQERLSKLSGGVAVFKVGGASESEV 419

Query:   421 GERKDRVTDALNATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKA 480
             GERKDRVTDALNATRAAVEEGI+PGGGVALLYATKAL+NL+TENEDQRRG+ I+QNALKA
Sbjct:   420 GERKDRVTDALNATRAAVEEGIIPGGGVALLYATKALDNLQTENEDQRRGVQIVQNALKA 479

Query:   481 PTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAAKGEYVDMVKAGIIDPLKVVRTALADAA 540
             P  TIA+NAG+DGS ++GKLLEQDD NFGFDAAKG+YVDMVKAGIIDP+KV+RTAL DAA
Sbjct:   480 PAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAA 539

Query:   541 SVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLG 574
             SVSLL TTTEA+VLV +D+    P+ VP+M  +G
Sbjct:   540 SVSLLLTTTEASVLVKADENT--PNHVPDMASMG 571
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006457 "protein folding" evidence=IEA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288181 hspA "chaperonin 60" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
CGD|CAL0001744 HSP60 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|O74261 HSP60 "Heat shock protein 60, mitochondrial" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0BUM0CH60_RICRONo assigned EC number0.55210.91470.9616yesno
A4YRI5CH601_BRASONo assigned EC number0.57140.93210.9944yesno
B6IU98CH60_RHOCSNo assigned EC number0.58150.90430.9523yesno
A8GPB6CH60_RICAHNo assigned EC number0.55400.91470.9598yesno
Q5FPQ6CH60_GLUOXNo assigned EC number0.55900.93390.9889yesno
O85754CH60_RICTYNo assigned EC number0.55050.92520.9672yesno
Q2G2Z4CH60_NOVADNo assigned EC number0.56060.91650.9634yesno
Q1GRD4CH602_SPHALNo assigned EC number0.56210.93210.9944yesno
Q2RWV4CH602_RHORTNo assigned EC number0.55150.92520.9708yesno
Q2WAW8CH60_MAGSANo assigned EC number0.57960.90430.9420yesno
A8GT30CH60_RICRSNo assigned EC number0.55210.91470.9616yesno
Q1QK71CH602_NITHXNo assigned EC number0.55850.90430.9523yesno
P29197CH60A_ARATHNo assigned EC number0.70570.96170.9584nono
Q16C40CH601_ROSDONo assigned EC number0.54710.93910.9944yesno
C3PP72CH60_RICAENo assigned EC number0.55020.91470.9616yesno
Q3SQS3CH601_NITWNNo assigned EC number0.57190.90430.9594yesno
P35480CH60_BRANANo assigned EC number0.65590.95820.9386N/Ano
A8I5R5CH602_AZOC5No assigned EC number0.57470.90600.9612yesno
Q6W1D5CH602_RHISNNo assigned EC number0.55850.90430.9594yesno
Q93ZM7CH60C_ARATHNo assigned EC number0.79440.99300.9982yesno
Q54J97CH60_DICDINo assigned EC number0.55590.93730.9694yesno
P77829CH601_BRAJANo assigned EC number0.55840.93390.9944yesno
Q8GBD2CH60_ACEP3No assigned EC number0.56490.92170.9706yesno
Q92H04CH60_RICCNNo assigned EC number0.55190.91650.9616yesno
A5VBQ6CH60_SPHWWNo assigned EC number0.56810.91650.9599yesno
Q4UMF2CH60_RICFENo assigned EC number0.54740.92860.9762yesno
Q2N5R9CH602_ERYLHNo assigned EC number0.58600.91820.96yesno
Q43298CH62_MAIZENo assigned EC number0.67300.99650.9947N/Ano
A5EG60CH603_BRASBNo assigned EC number0.57140.93390.9944yesno
Q05046CH62_CUCMANo assigned EC number0.68300.97730.9773N/Ano
Q9ZCT7CH60_RICPRNo assigned EC number0.55240.92520.9672yesno
Q05045CH61_CUCMANo assigned EC number0.67600.97730.9773N/Ano
P48220CH60_ZYMMONo assigned EC number0.55660.90430.9523yesno
A5G1G2CH60_ACICJNo assigned EC number0.56340.920.9635yesno
A8F2B5CH60_RICM5No assigned EC number0.55210.91470.9616yesno
P29185CH61_MAIZENo assigned EC number0.68940.96170.9584N/Ano
Q11DQ8CH602_MESSBNo assigned EC number0.55850.90430.9594yesno
C4K2T9CH60_RICPUNo assigned EC number0.55210.91470.9616yesno
Q2KAU2CH602_RHIECNo assigned EC number0.55850.90430.9594yesno
A6U901CH603_SINMWNo assigned EC number0.55360.92170.9778yesno
A9HK37CH601_GLUDANo assigned EC number0.56810.90430.9506yesno
Q1RIZ3CH60_RICBRNo assigned EC number0.55050.92520.9672yesno
A8GW07CH60_RICB8No assigned EC number0.55050.92520.9672yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
HSP60-3A
HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding; HEAT SHOCK PROTEIN 60-3A (HSP60-3A); FUNCTIONS IN- protein binding, ATP binding; INVOLVED IN- response to cadmium ion; LOCATED IN- mitochondrion, plasma membrane; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Chaperonin Cpn60/TCP-1 (InterPro-IPR002423), Chaperonin Cpn60, conserved site (InterPro-IPR018370), Chaperonin Cpn60 (InterPro-IPR001844); BEST Arabidopsis thaliana protein match is- HSP60 (HEAT SHOCK PROTEIN 60); ATP binding (TAIR-AT3G23990.1); Has 24236 Blast [...] (572 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
CPN10
CPN10 (CHAPERONIN 10); chaperone binding; Encodes mitochondrial-localized chaperonin 10 that co [...] (98 aa)
•  •• • 0.936
AT3G07770
ATP binding; ATP binding; FUNCTIONS IN- ATP binding; INVOLVED IN- protein folding; LOCATED IN- [...] (799 aa)
   •  • 0.890
HSP60-2
HSP60-2 (HEAT SHOCK PROTEIN 60-2); ATP binding; HEAT SHOCK PROTEIN 60-2 (HSP60-2); FUNCTIONS IN [...] (585 aa)
  ••  ••0.878
AT2G40360
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (753 aa)
   •    0.867
HSP60
HSP60 (HEAT SHOCK PROTEIN 60); ATP binding; mitochondrial chaperonin HSP. assist in rapid assem [...] (577 aa)
  ••  ••0.863
AT1G23100
10 kDa chaperonin, putative; 10 kDa chaperonin, putative; FUNCTIONS IN- ATP binding; INVOLVED I [...] (97 aa)
•  •• • 0.851
TUFA
elongation factor Tu, putative / EF-Tu, putative; elongation factor Tu, putative / EF-Tu, putat [...] (454 aa)
   •  • 0.837
AT1G80270
DNA-binding protein, putative; DNA-binding protein, putative; FUNCTIONS IN- DNA binding; INVOLV [...] (596 aa)
   •    0.829
AT1G63660
GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; GMP synt [...] (534 aa)
•  •  • 0.828
AT1G52930
brix domain-containing protein; brix domain-containing protein; LOCATED IN- cellular_component [...] (320 aa)
   •    0.815

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.0
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 1e-174
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-153
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-149
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-134
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-104
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 8e-38
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 2e-18
cd03343517 cd03343, cpn60, cpn60 chaperonin family 6e-18
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 3e-17
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-15
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-15
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 1e-10
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 3e-09
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 5e-09
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 3e-07
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 5e-07
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-06
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 6e-06
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 8e-06
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-05
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-05
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 4e-05
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-04
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-04
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 3e-04
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 6e-04
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 7e-04
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 0.002
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 0.002
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 0.003
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  774 bits (2001), Expect = 0.0
 Identities = 318/520 (61%), Positives = 405/520 (77%), Gaps = 2/520 (0%)

Query: 34  KDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFR 93
           KDI FG  AR A+L+GV+++A+AVKVT+GPKGRNV+IEKS G+PK+TKDGVTVA+ IE  
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 94  DKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMA 153
           D  +++GA LVK+VA  TN  AGDGTT ATVL +AI+ EG K+VAAG N MDL+ GI+ A
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 154 IDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTM 213
           ++AV+ +LK  ++ + T EEI QVATISANG+ EIGEL+A AMEKVGK+GVITV +G T+
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 214 VNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEK 273
             ELEVV GM+  RGY+SPYFVTDP+  + ELENP IL+ DKKIS +  L+ +LEL  + 
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 274 NRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISE 333
            R LLI+AEDVE +ALA L++NK   G+KVCA+KAPGFGD R+A L+D+AILTGG +ISE
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 334 DRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDR 393
           + GL L+ V  E LG AKKV V+ DDT ++ G GDK  I+ R  ++ +  + ++ + +D+
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRK-QIEETTSDYDK 359

Query: 394 EKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYA 453
           EK QERL+KL+GGVAV KVGGA+EVE+ E+KDRV DALNATRAAVEEGIVPGGGVALL A
Sbjct: 360 EKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRA 419

Query: 454 TKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDAA 513
           + AL+ LK  N D++ GI I++ AL+AP   IA NAG DGS ++ K+LE  D  FG+DAA
Sbjct: 420 SPALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD-GFGYDAA 478

Query: 514 KGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATV 553
            GEYVDM++AGIIDP KVVR+AL +AASV+ L  TTEA V
Sbjct: 479 TGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALV 518

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 575
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093529 groEL chaperonin GroEL 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.95
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.94
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.29
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 97.24
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.1e-111  Score=926.84  Aligned_cols=540  Identities=57%  Similarity=0.871  Sum_probs=519.8

Q ss_pred             cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181           32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT  111 (575)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q  111 (575)
                      |.|.+.||.+++..|++++..++++|+|||||+||+|||+++.|+++|||||+||+++|+++||.+|+||+|++++|++|
T Consensus         1 ~~~~~~~~~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~q   80 (542)
T PRK12849          1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKT   80 (542)
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhc
Confidence            35889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181          112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL  191 (575)
Q Consensus       112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l  191 (575)
                      |+++||||||+|+|+++||+++.+++++|+||..|++||+.|.+.+++.|+++++|+++.++|.++|+|+++++++++++
T Consensus        81 d~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~l  160 (542)
T PRK12849         81 NDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGEL  160 (542)
T ss_pred             CCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181          192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV  271 (575)
Q Consensus       192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~  271 (575)
                      +++|+..+++++.|.++.|++.+|++++++|++|+++|.+|+|.++.+.|++.++||+|+++|++|++++++.++++++.
T Consensus       161 v~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~  240 (542)
T PRK12849        161 IAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA  240 (542)
T ss_pred             HHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCCHHHHHHHHHHHH
Confidence            99999999988888888999998877999999999999999999888889999999999999999999999999999999


Q ss_pred             HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181          272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK  351 (575)
Q Consensus       272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~  351 (575)
                      +.|++|||++++|+++++++|..|++++.++|++||+|+|+++++++|+|||.+|||++++++.+..++++++++||+|+
T Consensus       241 ~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~  320 (542)
T PRK12849        241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAK  320 (542)
T ss_pred             HhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEEecccccCCcccCCHHHCceee
Confidence            99999999999999999999999999999999999999999999999999999999999998777779999999999999


Q ss_pred             EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181          352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL  431 (575)
Q Consensus       352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal  431 (575)
                      .|+++++++++++++++++++..|++++ +.+++.+.++|++++|+||++||+|+++||+|||+|+.+++|++|+++||+
T Consensus       321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~l-~~~~~~~~~~~~~~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl  399 (542)
T PRK12849        321 RVTITKDNTTIVDGAGDKEAIEARVAQI-RRQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDAL  399 (542)
T ss_pred             EEEEeeeeEEEEeCCCCHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCcccCccHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcCCCceeEe
Q 008181          432 NATRAAVEEGIVPGGGVALLYATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFD  511 (575)
Q Consensus       432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~Gid  511 (575)
                      +++++++++|||||||++|++++..|++++..++++|+++++|++||+.||++||+|||+|+.+++.+|++.| .++|+|
T Consensus       400 ~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d  478 (542)
T PRK12849        400 NATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFN  478 (542)
T ss_pred             HHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC-CCccee
Confidence            9999999999999999999999999999983378999999999999999999999999999999999999877 579999


Q ss_pred             cCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCC
Q 008181          512 AAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLG  574 (575)
Q Consensus       512 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~~~~~~~~~~  574 (575)
                      +.+|++.||++.|||||+.+|.++|+.|+++|++||++|++|+.+|++..| |-+||||++.+
T Consensus       479 ~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~~~~-~~~~~~~~~~~  540 (542)
T PRK12849        479 AATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-PGGMGGMGGMG  540 (542)
T ss_pred             CCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCccCCC-CCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999998866544 67889998876

>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-157
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-143
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-143
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-143
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-143
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-143
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-142
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-142
1ss8_A524 Groel Length = 524 1e-142
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-142
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-142
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-141
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-141
1oel_A547 Conformational Variability In The Refined Structure 1e-141
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-141
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-139
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-128
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-116
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 6e-46
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 5e-45
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 6e-45
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 3e-44
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 2e-43
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 8e-38
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 4e-37
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 7e-36
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 1e-32
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 9e-15
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-13
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-13
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-13
1a6d_A545 Thermosome From T. Acidophilum Length = 545 8e-13
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 9e-13
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-12
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-11
3izh_A513 Mm-Cpn D386a With Atp Length = 513 7e-10
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 7e-10
3izi_A513 Mm-Cpn Rls With Atp Length = 513 2e-09
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 2e-09
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-09
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 4e-09
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 6e-09
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-08
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-08
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 6e-08
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-07
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-07
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-07
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-06
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-06
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-06
1a6d_B543 Thermosome From T. Acidophilum Length = 543 3e-05
1a6d_B543 Thermosome From T. Acidophilum Length = 543 3e-04
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 8e-05
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-04
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-04
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  551 bits (1420), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 290/536 (54%), Positives = 383/536 (71%), Gaps = 7/536 (1%)
Query: 33  AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
           AK++ F   AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA+ IE 
Sbjct: 3   AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 93  RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
            DK +++GA +V++VA  TN  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +
Sbjct: 63  SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122
Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
           A   V+  +KS A+ ++   E+ QV TISANGE  IG+ +A AM++VG EGVITV +   
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182
Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
           M  E+EVV GM+  RGY+SPYFVT+      ELE+  IL+++KK+S +  +V LLE  ++
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242
Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
             + LLIVAEDVE +ALA L++NK   G+K+ A+KAPGFGD R+A L D+AILTGG++IS
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
           ED G+ L+ V  +MLG AKKV+++ D+T ++ G G+K  IE R  ++ Q  + ++ + +D
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQIRQQ-IEETTSDYD 361
Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
           REK QER++KL GGVAV +VGG +E+EV ERKDRV DALNATRAAV+EGIV GGGVAL+ 
Sbjct: 362 REKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQ 421
Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
             K LE L   N DQ  GI II+ AL+AP   IA NAG DG+ + GK+ E  D  FGF+A
Sbjct: 422 GAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNA 481
Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVP 568
              EY DM K G+IDP KVVRTAL DAASV+ L  TTEA +        KP  + P
Sbjct: 482 QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMI------AEKPEPKAP 531
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query575
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 5e-82
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-80
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-60
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 7e-26
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-24
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 5e-24
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 6e-24
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-23
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-23
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-23
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-23
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-23
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 7e-23
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-22
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-22
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 2e-22
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 2e-22
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 3e-22
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 2e-21
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 3e-21
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 8e-21
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-20
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 4e-20
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 2e-18
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  737 bits (1904), Expect = 0.0
 Identities = 291/542 (53%), Positives = 388/542 (71%), Gaps = 2/542 (0%)

Query: 33  AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEF 92
           AK++ F   AR  ML+GV+ +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA+ IE 
Sbjct: 3   AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62

Query: 93  RDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKM 152
            DK +++GA +V++VA  TN  AGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI +
Sbjct: 63  SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122

Query: 153 AIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNT 212
           A   V+  +KS A+ ++   E+ QV TISANGE  IG+ +A AM++VG EGVITV +   
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182

Query: 213 MVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVE 272
           M  E+EVV GM+  RGY+SPYFVT+      ELE+  IL+++KK+S +  +V LLE  ++
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242

Query: 273 KNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIIS 332
             + LLIVAEDVE +ALA L++NK   G+K+ A+KAPGFGD R+A L D+AILTGG++IS
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302

Query: 333 EDRGLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFD 392
           ED G+ L+ V  +MLG AKKV+++ D+T ++ G G+K  IE R  ++ +  + ++ + +D
Sbjct: 303 EDLGMKLENVTIDMLGRAKKVSINKDNTTIVDGAGEKAEIEARVSQI-RQQIEETTSDYD 361

Query: 393 REKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVEEGIVPGGGVALLY 452
           REK QER++KL GGVAV +VGG +E+EV ERKDRV DALNATRAAV+EGIV GGGVAL+ 
Sbjct: 362 REKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEGIVVGGGVALVQ 421

Query: 453 ATKALENLKTENEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQDDVNFGFDA 512
             K LE L   N DQ  GI II+ AL+AP   IA NAG DG+ + GK+ E  D  FGF+A
Sbjct: 422 GAKVLEGLSGANSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNA 481

Query: 513 AKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDG 572
              EY DM K G+IDP KVVRTAL DAASV+ L  TTEA +     +   P   +P+M G
Sbjct: 482 QTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMI-AEKPEPKAPAGGMPDMGG 540

Query: 573 LG 574
           +G
Sbjct: 541 MG 542
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query575
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.97
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.88
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.78
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
Probab=100.00  E-value=3.9e-118  Score=981.17  Aligned_cols=541  Identities=49%  Similarity=0.783  Sum_probs=514.0

Q ss_pred             cchhhcccHHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhcc
Q 008181           32 VAKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGAT  111 (575)
Q Consensus        32 ~~~~~~~g~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~q  111 (575)
                      |+|++.||.++|.+|++||..|+++|+|||||+||+|||++++|+++|||||+||+|+|+++||+||+||||++++|++|
T Consensus         1 ~~k~~~~g~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q   80 (543)
T 1we3_A            1 MAKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKT   80 (543)
T ss_dssp             -CEEEEEHHHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCccchHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHH
Q 008181          112 NKAAGDGTTCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGEL  191 (575)
Q Consensus       112 d~~~GDGTTs~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~l  191 (575)
                      |+++||||||+|+|+++||+++.+++++|+||..|++||++|++.+++.|+++++|++++++|.++|+++++ +++|+++
T Consensus        81 d~e~GDGTTtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~l~~vA~iS~~-~~~i~~l  159 (543)
T 1we3_A           81 NDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKL  159 (543)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBCCCSHHHHHHHHHHHHT-CHHHHHH
T ss_pred             heecCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHhhhhhcC-CHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998 7899999


Q ss_pred             HHHHHHHhcccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHH
Q 008181          192 LARAMEKVGKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAV  271 (575)
Q Consensus       192 v~ea~~~v~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~  271 (575)
                      +++|+.++++++.|.+++|++++|++++++|++|+++|+||||+++++.|++.++||+|+++|++|+++++++++++++.
T Consensus       160 i~dAv~~V~~~g~I~Ve~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~Is~~~~l~~~le~i~  239 (543)
T 1we3_A          160 IADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVA  239 (543)
T ss_dssp             HHHHHHTTCTTSEEEEEECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSCBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcCCcEEEecCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCCcCCHHHHHHHHHHHH
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCEEEEecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCccee
Q 008181          272 EKNRALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAK  351 (575)
Q Consensus       272 ~~~~~lvI~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~  351 (575)
                      +.|+||||++++|+++++++|+.|++++..+|++||.|+|+++++++|+|||++|||++++++.+++++++++++||+|+
T Consensus       240 ~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~  319 (543)
T 1we3_A          240 QTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAE  319 (543)
T ss_dssp             TTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHHHHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEE
T ss_pred             hcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhhHHHHHHHHHHhCCceeeccccCCcccCCHHHCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeccEEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHH
Q 008181          352 KVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDAL  431 (575)
Q Consensus       352 ~v~~~~~~~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal  431 (575)
                      .|+++++++++|+||++++++++|+.++ +.+++.+.++|++++|+||+++|+|++|||+|||+|+++++|+||++|||+
T Consensus       320 ~v~~~~~~~~~i~g~~~~~~i~~r~~~i-~~~~~~~~s~~~~e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl  398 (543)
T 1we3_A          320 RVRITKDETTIVGGKGKKEDIEARINGI-KKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDAL  398 (543)
T ss_dssp             EEEECSSCEEEEEECCCHHHHHHHHHHH-HHHHTTCCSHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCEEEEEcCCCCHHHHHHHHHHH-HHHhhccCchhHHHHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCcccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC-CCcee
Q 008181          432 NATRAAVEEGIVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD-DVNFG  509 (575)
Q Consensus       432 ~~~~~al~~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~-~~~~G  509 (575)
                      +++|+++++|+|||||++|++++.+|++++.+ ++++|+++++|++||+.||++||+|||+|+.+++++|++.| +.++|
T Consensus       399 ~~~r~av~~giVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~G  478 (543)
T 1we3_A          399 NATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYG  478 (543)
T ss_dssp             HHHHHHHHHCEEETTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCSCTTEE
T ss_pred             HHHHHHhccCcCCCccHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcCCCCEE
Confidence            99999999999999999999999999999876 78999999999999999999999999999999999999876 46799


Q ss_pred             EecCCCcccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhccCCCCCCCCCCCCCCCCCCCC
Q 008181          510 FDAAKGEYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVLVNSDDKNKPPSRVPNMDGLGY  575 (575)
Q Consensus       510 id~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~~~~~~~~~~~~~~~~~~~~~~  575 (575)
                      ||..+|++.||++.|||||+.||+++|++|+|+|++||++|++|...|+++|+||. .+||+|-+|
T Consensus       479 ~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~~~~~~~-~~~~~~~~~  543 (543)
T 1we3_A          479 FNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPEKKESTPA-SAGAGDMDF  543 (543)
T ss_dssp             EETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSCC----------------
T ss_pred             EeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCCCCCC-CCCCCCCCC
Confidence            99999999999999999999999999999999999999999999998876655544 233555443
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 575
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 9e-73
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 3e-71
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 5e-70
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 1e-60
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 1e-53
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 9e-29
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 3e-45
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-19
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 1e-44
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-37
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 3e-36
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 1e-10
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 7e-27
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 3e-06
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 6e-26
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-14
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-25
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-13
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 8e-23
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 2e-04
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 7e-19
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 7e-11
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-18
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 5e-16
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-16
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 2e-11
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  228 bits (584), Expect = 9e-73
 Identities = 87/192 (45%), Positives = 129/192 (67%), Gaps = 1/192 (0%)

Query: 216 ELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNR 275
                 GM+  RGY+SPYF+  P+T   ELE+P IL+ DKKIS++  ++ +LE   +  +
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 276 ALLIVAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDR 335
            LLI+AEDVE +ALA L++N     VKV A+KAPGFGD R+A L D+A LTGG +ISE+ 
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 336 GLTLDKVKEEMLGTAKKVTVSVDDTIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREK 395
           G+ L+K   E LG AK+V ++ D T ++ G G++  I+ R  ++ +  + ++ + +DREK
Sbjct: 123 GMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQI-RQQIEEATSDYDREK 181

Query: 396 AQERLSKLTGGV 407
            QER++KL GGV
Sbjct: 182 LQERVAKLAGGV 193
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query575
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.98
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.97
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.95
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.93
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.8
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.77
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.76
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.76
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.53
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.24
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 98.88
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 98.87
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 98.77
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.57
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.44
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.4
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.58
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 95.42
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 91.83
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=3.6e-49  Score=389.89  Aligned_cols=239  Identities=23%  Similarity=0.420  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCCceEeecCCCCeEEecChHHHhccccccCccchhhhHHHHHHHhccccccCCcc
Q 008181           40 VGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSIGNPKVTKDGVTVARSIEFRDKAKDVGANLVKQVAGATNKAAGDGT  119 (575)
Q Consensus        40 ~~~~~~~~~~~~~l~~~v~stlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~l~hP~~~~ga~ll~~~s~~qd~~~GDGT  119 (575)
                      ++++..|++++..|+++|++||||+|++|||+++.|+++|||||+||++++.++||.    ++++++++++|++++||||
T Consensus         1 ~~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGt   76 (243)
T d1a6db1           1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGT   76 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHH
T ss_pred             ChHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCC
Confidence            378999999999999999999999999999999999999999999999999999997    9999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Q 008181          120 TCATVLTQAILTEGCKSVAAGVNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKV  199 (575)
Q Consensus       120 Ts~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~l~~L~~~s~~v~~~~~L~~va~ts~~~~~~la~lv~ea~~~v  199 (575)
                      ||+++|+++||+++.+++..|+||..|++||+.+++.+++.|++++.++                               
T Consensus        77 tt~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v-------------------------------  125 (243)
T d1a6db1          77 TTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKI-------------------------------  125 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEEC-------------------------------
T ss_pred             cchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccc-------------------------------
Confidence            9999999999999999999999999999999999999988654431110                               


Q ss_pred             cccCeEEEecCCcccceEEEEeceEEeecccCCCCccCcCCCceeccCceeeecccccCCHHHHHHHHHHHHHhCCCEEE
Q 008181          200 GKEGVITVVDGNTMVNELEVVGGMKLARGYISPYFVTDPKTQKCELENPLILIYDKKISDMNSLVGLLELAVEKNRALLI  279 (575)
Q Consensus       200 ~~~~~I~~~~G~~~~ds~~l~~Giv~~~~~~~~~~~~~~~~~~~~l~~~kIll~d~~l~~~~~l~~~le~i~~~~~~lvI  279 (575)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (243)
T d1a6db1         126 --------------------------------------------------------------------------------  125 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCchHHHHHHHHHhhcccCceEEEEecCCCCCcchhHHHHHHHHhCCeEeecCCCCcccccCcccCcceeEEEEeecc
Q 008181          280 VAEDVERDALAMLILNKHHAGVKVCAIKAPGFGDNRRANLDDLAILTGGEIISEDRGLTLDKVKEEMLGTAKKVTVSVDD  359 (575)
Q Consensus       280 ~~~~i~~~al~~l~~n~~~~~~~i~~vk~~~~~~~~~~~le~la~~tGa~iis~~~~~~~~~~~~~~lG~~~~v~~~~~~  359 (575)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (243)
T d1a6db1         126 --------------------------------------------------------------------------------  125 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEecCCChhhHHHHHHHHHhhhhccCcchhhHHHHHHHHhhhcCCeEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008181          360 TIVLHGGGDKKLIEERCEEVCQTAMGKSAATFDREKAQERLSKLTGGVAVFKVGGASEVEVGERKDRVTDALNATRAAVE  439 (575)
Q Consensus       360 ~~~~~g~~~~~~i~~~~~~l~~~~l~~~~~~~~~~~l~~r~~~l~g~~~tI~irG~t~~~l~E~~r~l~dal~~~~~al~  439 (575)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (243)
T d1a6db1         126 --------------------------------------------------------------------------------  125 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hCcccCccHHHHHHHHHHHhhhcc-CchhHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHhcC---CCceeEecCCC
Q 008181          440 EGIVPGGGVALLYATKALENLKTE-NEDQRRGIHIIQNALKAPTLTIASNAGFDGSTIIGKLLEQD---DVNFGFDAAKG  515 (575)
Q Consensus       440 ~gvvpGGGa~E~~l~~~L~~~~~~-~~~~~~~i~~~a~AL~~ip~~L~~NaG~d~~~~l~~l~~~~---~~~~Gid~~~g  515 (575)
                       .++||||++|+.++..+.+++++ ++++|+++++|++||+.||++|++|||+|+.+++.+|+..|   +.++|+|..+|
T Consensus       126 -~~~~ggGa~e~~~a~~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g  204 (243)
T d1a6db1         126 -AYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTG  204 (243)
T ss_dssp             -EEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTT
T ss_pred             -ccccCCCchhHHHHHHHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCC
Confidence             01147999999999999999988 89999999999999999999999999999999999998865   67899999999


Q ss_pred             cccccccCcccccHHHHHHHHHHHHHHHHHHhccchhhc
Q 008181          516 EYVDMVKAGIIDPLKVVRTALADAASVSLLFTTTEATVL  554 (575)
Q Consensus       516 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~  554 (575)
                      ++.||.+.|||||+.+|+++|+.|+|+|++|||||+||.
T Consensus       205 ~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         205 EIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             EEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             EEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure