Citrus Sinensis ID: 008182

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-----
Protein Sequence
MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHEEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccccEEHccEEEEEcccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSWAVADAvdykgspadpsktggwvpAALVLGIELCERLSTMGIAVNLVTYLVGtmhlpsatsaniVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLrqlrprpcketathtceqasgfQMGVLYIALYLIALGtgglkssvsgfgtdqfdekdekEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKryrykkssgspiVHIFQVIVAAIKKRkmdlpcnvgmlyedtpeasrihhteqfhfLDKAAIvaegdfeagstpnpwklcsvtSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERsigrfqipagslTVFFVSAILITLAVYDRLIMPlwkkwkgkpgftnlQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFflvgageafiytgqldffitkspkgmktmsTGLFLTTLSLGFFVSSFLVAVVKKVtgskggggwladninrgRLDLFYGLLAILSIINLVIYLICAvwykpkkpkagiqmetyvkgssaeekc
Flexible Loop (DISEMBL)
MSWAVADAVdykgspadpsktggWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKkssgspivHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDfeagstpnpwKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVtgskggggwladniNRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMEtyvkgssaeekc
Low Complexity Region (SEG)
MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYffsrffffISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKtmstglflttlslgffvssflvavvkkvtgskggggWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Disordered region (IsUnstruct)
*********************GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGF**************QMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK*********************
Disordered Region (DISOPRED)
*SWAVADAVDYKGSPAD*S*TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK*******EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD*K*KTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV*******************HFLD*********************CSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK***********************
Disordered Region (DISEMBL)
********VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP*********TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETY**********
Disordered Region (DISPRO)
****VADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKP*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	575	2.2.26 [Sep-21-2011]
Q9SZY4	577	Nitrate transporter 1.4 O	yes	no	0.986	0.982	0.743	0.0
Q05085	590	Nitrate transporter 1.1 O	no	no	0.96	0.935	0.554	1e-171
Q9LVE0	590	Nitrate transporter 1.3 O	no	no	0.925	0.901	0.502	1e-144
Q9M390	570	Peptide transporter PTR1	no	no	0.944	0.952	0.431	1e-128
P46032	585	Peptide transporter PTR2	no	no	0.956	0.940	0.421	1e-128
Q9LFB8	570	Peptide transporter PTR5	no	no	0.942	0.950	0.420	1e-126
Q93Z20	590	Probable peptide/nitrate	no	no	0.942	0.918	0.396	1e-121
Q9LQL2	614	Nitrate transporter 1.5 O	no	no	0.963	0.902	0.379	1e-112
Q9SX20	596	Probable nitrite transpor	no	no	0.935	0.902	0.420	1e-111
Q93VV5	591	Probable peptide/nitrate	no	no	0.940	0.915	0.388	1e-110

>sp|Q9SZY4|PTR27_ARATH Nitrate transporter 1.4 OS=Arabidopsis thaliana GN=NRT1.4 PE=1 SV=1

 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/576 (74%), Positives = 489/576 (84%), Gaps = 9/576 (1%)

Query: 2   SWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA 61
           SW VADAVDYKG PAD SKTGGW+ AAL+LGIE+ ERLSTMGIAVNLVTYL+ TMHLPS+
Sbjct: 6   SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query: 62  TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 121
           TSANIVTDFMGTSFLLCLLGGFLAD+FLGR+KTI IF+ +Q LGTG LA+ TKL +LRP 
Sbjct: 66  TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query: 122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 181
            C       C  A+ FQM +LY++LYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct: 126 TCHHG--EACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query: 182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 241
           FF+RFFFFIS+GTL+AVTVLVY+QDE+ RS  YGIC+V+M +AI+IFL GTKRYRYKKS 
Sbjct: 184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query: 242 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE 301
           GSP+V IFQVI AA +KRKM+LP ++  LYED PE  RI HT+QFH LDKAAIVAEGDFE
Sbjct: 244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query: 302 AG----STPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
                 + PNPWKL SVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSVEQA+TM R+
Sbjct: 304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
           IG F+IPAGSLTVFFV+AILITLAVYDR IMP WKKWKGKPGF++LQR+AIGLVLS  GM
Sbjct: 364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query: 418 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 477
           AAAALVE+KRLSVA++   +  TLP+SVFLL+PQFFLVGAGEAFIYTGQLDFFIT+SPKG
Sbjct: 424 AAAALVEQKRLSVAKSS--SQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query: 478 MKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILS 537
           MKTMSTGLFLTTLSLGFFVSSFLV++VK+VT +    GWLADNIN GRLD FY LL ILS
Sbjct: 482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query: 538 IINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 573
            IN V+Y+ICA+W+KP K K  ++ E   KG S E+
Sbjct: 542 GINFVVYIICALWFKPTKGKDSVEKENG-KGFSVED 576

Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05085|PTR7_ARATH Nitrate transporter 1.1 OS=Arabidopsis thaliana GN=NRT1.1 PE=1 SV=1

 Score =  600 bits (1548), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 318/573 (55%), Positives = 413/573 (72%), Gaps = 21/573 (3%)

Query: 7   DAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 66
           DA D++G PAD SKTGGW  AA++L IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct: 14  DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query: 67  VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 126
           VT+F+GTSF+LCLLGGF+ADTFLGRY TIAIFAA+Q  G  +L + T +  LRP  C  T
Sbjct: 74  VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query: 127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF 186
            +  CEQASG Q+ VLY+ALYL ALGTGG+K+SVSGFG+DQFDE + KE+++M YFF+RF
Sbjct: 134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query: 187 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV 246
           FF I++G+L+AVTVLVY+QD++ R  GYGIC+ A+ +A+ +FLAGT RYR+KK  GSP+ 
Sbjct: 194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query: 247 HIFQVIVAAIKKRKMDLPCNVGMLY--EDTPEAS-------RIHHTEQFHFLDKAAIVAE 297
            +  VIVAA + RK++LP +   LY  +D   A        ++ HTEQF  LDKAAI   
Sbjct: 254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI--- 310

Query: 298 GDFEAGSTP---NPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTM 354
            D EAG T    N W L ++T VEEVK + R+LPIWAT I+FWT +AQ+ T SV Q+ T+
Sbjct: 311 RDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query: 355 ERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLS 413
           +RSIG F+IP  S+ VF+V  +L+T AVYDR+ + L KK    P G   LQR+ +GL   
Sbjct: 371 DRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFG 430

Query: 414 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473
            + MA AALVE KRL  A A G T  TLP+  +LLIPQ+ +VG GEA IYTGQLDFF+ +
Sbjct: 431 SMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRE 490

Query: 474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLL 533
            PKGMK MSTGL L+TL+LGFF SS LV +V+K TG      W+AD++N+GRL  FY L+
Sbjct: 491 CPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGK--AHPWIADDLNKGRLYNFYWLV 548

Query: 534 AILSIINLVIYLICAVWYKPKKPK---AGIQME 563
           A+L  +N +I+L+ + WY  K+ +    GI+++
Sbjct: 549 AVLVALNFLIFLVFSKWYVYKEKRLAEVGIELD 581

Dual affinity nitrate transporter. Involved in proton-dependent nitrate uptake and in the regulation of the nitrate transporter NRT2.1. Acts also as a nitrate sensor that trigger a specific signaling pathway stimulating lateral root growth and seed germination. The uptake activity is not required for sensor function. Displays an auxin transport facilitation inhibited by high nitrate concentration. Required to prevent auxin accumulation in preemerged lateral root primordia and young lateral roots when external nitrate concentration is low or null. May be involved in the basipetal transport of auxin out of the lateral root tips.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVE0|PTR33_ARATH Nitrate transporter 1.3 OS=Arabidopsis thaliana GN=NRT1.3 PE=1 SV=1

 Score =  512 bits (1319), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 281/559 (50%), Positives = 381/559 (68%), Gaps = 27/559 (4%)

Query: 7   DAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 66
           +A DY+G+P D SKTGGW+ A L+LG EL ER+  MGI++NLVTYLVG +H+ SA SA I
Sbjct: 16  EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query: 67  VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE- 125
           VT+FMGT  LL LLGGFLAD  LGRYK +AI A+V  LG  +L + T +  +RP  C + 
Sbjct: 76  VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query: 126 -TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 184
               H C +A+G Q+ +LY+ALY IALG GG+KS+VSGFG+DQFD  D KE+ QM +FF+
Sbjct: 136 RRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFN 195

Query: 185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 244
           RF+F IS+G+L AV  LVY+QD + R  GYGI +  M +A I+ L GTKRYR+KK  GSP
Sbjct: 196 RFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSP 255

Query: 245 IVHIFQVIVAAIKKRKMDLPCNVGML--YEDTPEASRIHHTEQFHFLDKAAIV------A 296
              I++V   A KKRK   P +  +L  Y++T     + HTE    LDKAAI       +
Sbjct: 256 FTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTT----VPHTEMLKCLDKAAISKNESSPS 311

Query: 297 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
             DFE     +PW + +VT VEEVK+V +L+PIWAT I+FWT Y+QM TF+VEQAT M+R
Sbjct: 312 SKDFEE---KDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDR 368

Query: 357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIV 415
            +G F +PAGS + F +  IL+  ++ +R+ +PL ++   KP G T+LQR+ +GLV S+ 
Sbjct: 369 KLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMA 428

Query: 416 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 475
            MA AA++E  R   A           +S F L+PQ+FLVGAGEAF Y GQL+FFI ++P
Sbjct: 429 AMAVAAVIENARREAA-----VNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAP 483

Query: 476 KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI 535
           + MK+MSTGLFL+T+S+GFFVSS LV++V +VT       WL  N+N+ RL+ FY LL +
Sbjct: 484 ERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDK----SWLRSNLNKARLNYFYWLLVV 539

Query: 536 LSIINLVIYLICAVWYKPK 554
           L  +N +I+++ A+ ++ K
Sbjct: 540 LGALNFLIFIVFAMKHQYK 558

Low-affinity nitrate transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  460 bits (1184), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/556 (43%), Positives = 346/556 (62%), Gaps = 13/556 (2%)

Query: 9   VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
           VD   +PA+  KTG W     +LG E CERL+  G+  NLV YL   ++  +AT+AN VT
Sbjct: 13  VDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVT 72

Query: 69  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
           ++ GT ++  L+G F+AD +LGRY TIA F  +   G  +L +   +  L+P  C     
Sbjct: 73  NWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN---A 129

Query: 129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 188
            TC   S  Q  V ++ALY+IALGTGG+K  VS FG DQFDE DE EK + + FF+ F+F
Sbjct: 130 DTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYF 188

Query: 189 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
            I++G L+A TVLV+IQ  +    G+G+ +VAM +A+  F  G++ YR ++  GSP+  I
Sbjct: 189 SINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRI 248

Query: 249 FQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH------HTEQFHFLDKAAIVAEGDFEA 302
           FQVIVAA +K  + +P +  +L+E   + S I       HT+   F DKAA+ ++ D   
Sbjct: 249 FQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query: 303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-F 361
               NPW+LCSVT VEE+K +  LLP+WAT I+F T Y+QM T  V Q  TM++ +G+ F
Sbjct: 309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query: 362 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLSIVGMAAA 420
           +IP+ SL++F   ++L    VYD+ I+PL +K+ + + GFT LQRM IGLV+SI  M  A
Sbjct: 369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query: 421 ALVERKRLS-VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
            ++E  RL  V          + +S+F  IPQ+ L+G  E F + GQL+FF  ++P  M+
Sbjct: 429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 539
           ++ + L LTT++LG ++S+ LV VV K+T   G  GW+ DN+NRG LD F+ LLA LS +
Sbjct: 489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFL 548

Query: 540 NLVIYLICAVWYKPKK 555
           N ++YL  +  YK KK
Sbjct: 549 NFLVYLWISKRYKYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  458 bits (1179), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/562 (42%), Positives = 352/562 (62%), Gaps = 12/562 (2%)

Query: 3   WAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSAT 62
           +A   +VD+ G+P    KTG W     +LG E CERL+  GIA NL+TYL   +H  + +
Sbjct: 24  YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query: 63  SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP 122
           +A  VT + GT +L  L+G  LAD + GRY TIA F+ +  +G   L +   +  L+P  
Sbjct: 84  AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143

Query: 123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF 182
           C       C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A F
Sbjct: 144 C---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASF 200

Query: 183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG 242
           F+ F+F I++G L++ ++LV+IQ+     +G+GI +V M +AI  F  GT  YR++K  G
Sbjct: 201 FNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260

Query: 243 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVA 296
           SPI  I QV+VA+ +K  + +P +  +LYE   + S      +I HT+   +LDKAA+++
Sbjct: 261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 297 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
           E + ++G   N W+LC+VT VEE+K++ R+ PIWA+ IIF   YAQM T  V+Q   M  
Sbjct: 321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query: 357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIV 415
            IG FQ+P  +L  F  ++++I + +YDR I+PL +K+ G   GFT +QRM IGL +S++
Sbjct: 381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query: 416 GMAAAALVERKRLSVARAVGL--TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473
            MAAAA+VE  RL +A  +GL  + A +P+SV   IPQ+F++GA E F + GQL+FF  +
Sbjct: 441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query: 474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLL 533
           SP  M+++ + L L T +LG ++SS ++ +V   T   G  GW++DN+N G LD F+ LL
Sbjct: 501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query: 534 AILSIINLVIYLICAVWYKPKK 555
           A LS++N+ +Y   A  YK KK
Sbjct: 561 AGLSLVNMAVYFFSAARYKQKK 582

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  454 bits (1167), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/556 (42%), Positives = 351/556 (63%), Gaps = 14/556 (2%)

Query: 9   VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
           +D    PA+ +KTG W     +LG E CERL+  G++ NL+ YL   M++ + +++  V+
Sbjct: 14  LDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVS 73

Query: 69  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
           ++ GT +   L+G F+AD +LGRY TIA F  +   G  +L +   +  L P    ET  
Sbjct: 74  NWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTCSGET-- 131

Query: 129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 188
             C   +G Q  + +IALYLIALGTGG+K  VS FG DQFD+ DEKEK   + FF+ F+F
Sbjct: 132 --CHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query: 189 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
            I++G ++A +VLV+IQ  +    G G+ +VAM +A++ F AG+  YR +K  GSP+  +
Sbjct: 189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query: 249 FQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFEA 302
            QVIVA+ +K K+ +P +  +LYE+    S      ++ HT+   F DKAA+  E D + 
Sbjct: 249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query: 303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG-RF 361
            +  + WKLC+VT VEE+K + RLLPIWAT I+F + Y+QM T  V Q  T+++ +G  F
Sbjct: 309 AAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNF 368

Query: 362 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAA 420
           +IP+ SL++F   ++L    VYD+LI+P  +K+ G + GFT LQR+ IGLV+SI  M +A
Sbjct: 369 KIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSA 428

Query: 421 ALVERKRLSVARAVGL-TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
            ++E  RL+  +   L    T+P+++F  +PQ+FLVG  E F + GQL+FF  ++P  M+
Sbjct: 429 GILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMR 488

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 539
           ++ + L LT ++ G ++S+FLV +V KVT S G  GW+A N+N G LD F+ LLA LS +
Sbjct: 489 SLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFL 548

Query: 540 NLVIYLICAVWYKPKK 555
           N ++YL  A WY  KK
Sbjct: 549 NFLVYLWIAKWYTYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/555 (39%), Positives = 347/555 (62%), Gaps = 13/555 (2%)

Query: 8   AVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIV 67
           ++D  G+P    KTG W     +LG E CERL+  GIA NL+TY    +H  + ++A+ V
Sbjct: 40  SIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDV 99

Query: 68  TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA 127
             + GT ++  L+G  +AD++ GRY TIA F+A+  +G  +L +   L  L+P  C   A
Sbjct: 100 MIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACAGVA 159

Query: 128 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF 187
              C  A+  Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A FF+ F+
Sbjct: 160 AALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFNWFY 219

Query: 188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVH 247
           F I++G+ ++ T+LV++Q+ +   +G+ I +V M ++I  F  GT  YR++K  GSPI  
Sbjct: 220 FSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITR 279

Query: 248 IFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFE 301
           + QV+VAA +K K++LP ++  LYE   + S      +I HT+ + FLDKAA+++E + +
Sbjct: 280 VCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESK 339

Query: 302 AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRF 361
           +G+  NPWKLC+VT VEEVK + R+ PIWA+ I++   Y+Q+ T  V+Q  +M R I  F
Sbjct: 340 SGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRIIRSF 399

Query: 362 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIVGMAAA 420
           +IP  S  VF    +LI++ +YDR ++P  +++ G P G T+LQRM IGL LS++ +AAA
Sbjct: 400 EIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIAAA 459

Query: 421 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT 480
           A+VE  RL +A+        + +S+F  IPQ+ L+G  E F + G+++FF  +SP  M++
Sbjct: 460 AIVETVRLQLAQDF------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESPDAMRS 513

Query: 481 MSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIIN 540
           + + L L   ++G ++SS ++ +V   T   G  GW+ D++N+G LD F+ LL  L ++N
Sbjct: 514 VCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVSLGLVN 573

Query: 541 LVIYLICAVWYKPKK 555
           + +Y +  V +  KK
Sbjct: 574 IPVYALICVKHTKKK 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQL2|PTR14_ARATH Nitrate transporter 1.5 OS=Arabidopsis thaliana GN=NRT1.5 PE=1 SV=2

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 339/569 (59%), Gaps = 15/569 (2%)

Query: 9   VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
           VDY G P+  S +G WV   ++L  +    L+  G+ VNLV +L   +   +A +AN V+
Sbjct: 26  VDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVS 85

Query: 69  DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
            + GT ++  L+G FL+D++ GRYKT AIF  +  +G   L++ + +  +RPR C +  T
Sbjct: 86  KWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVT 145

Query: 129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF 188
             C   S  ++ + Y ++YLIALG GG + +++  G DQFDE+  KE      FFS F+ 
Sbjct: 146 -PCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYL 204

Query: 189 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
            ++LG+L + T+L Y +DE   ++G+   + +  + +I+FL GT RYRY K +G+P+   
Sbjct: 205 ALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRF 264

Query: 249 FQVIVAAIKKRKMDLPCN-VGMLYEDTPEAS--------RIHHTEQFHFLDKAAIVAEGD 299
            QV+VAA KK  ++ P      +Y+   E          RI HT++F FLDKAA +   D
Sbjct: 265 CQVLVAATKKSSVEAPLRGREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITARD 324

Query: 300 FE--AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
            +     + NPW+LC VT VEEVK + RL+PIW  TII+   + QM +  VEQ   M  S
Sbjct: 325 LDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNTS 384

Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWK--GKPGFTNLQRMAIGLVLSIV 415
           +  F+IP  S++ F + ++ + + +Y R++ P+  ++K  G  G T L RM IGLV++++
Sbjct: 385 VSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAVI 444

Query: 416 GMAAAALVERKRLSVA-RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 474
            M AA +VE  RL  A ++      +  +S+F   PQ+ L+GA E F+Y GQL+FF  ++
Sbjct: 445 AMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQT 504

Query: 475 PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLA 534
           P G+K+  + L + ++S+G FVSS LV +V K++      GW+  N+N+G LD FY LLA
Sbjct: 505 PDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLLA 564

Query: 535 ILSIINLVIYLICAVWYKPKKPKAGIQME 563
            L+ I+LV+Y+ CA WYKP + +   +M+
Sbjct: 565 ALTSIDLVVYIACAKWYKPIQLEGKDEMQ 593

Low-affinity proton-dependent bidirectional nitrate transporter. Involved in nitrate loading into xylem and not in nitrate uptake. Not involved in histidine or dipeptides transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/557 (42%), Positives = 335/557 (60%), Gaps = 19/557 (3%)

Query: 12  KGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFM 71
            G P  P   GG +    +   E+CE+L+ +G   N+++YL   +HLP   +AN +T+F 
Sbjct: 17  HGRPNRPK--GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFA 74

Query: 72  GTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC 131
           GTS L  LLG F+AD+F GR+ TI   + +  +G  +L +   +  LRP PCK      C
Sbjct: 75  GTSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK--GEEVC 132

Query: 132 EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFIS 191
             A   Q+ +LY+AL L ALG+GG++  V  FG DQFDE D  + T+   +F+ ++F + 
Sbjct: 133 VVADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMG 192

Query: 192 LGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQV 251
              L+AVTVLV+IQD +   +G GI +VAMF+++I F+ G + YR+   +GSP   + QV
Sbjct: 193 AAVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQV 252

Query: 252 IVAAIKKRKMDLPCNVGMLY-EDTPEAS-----RIHHTEQFHFLDKAAIVAEGD-FEAGS 304
            VAA +KRK+ +  +  +LY  D  +A      ++ HT+   FLDKAAIV E D  + G 
Sbjct: 253 GVAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQ 312

Query: 305 TPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSI-GRFQI 363
            PN W+L +V  VEE+K V R+ PI A+ I+  T YAQ  TFS++QA TM R +   FQI
Sbjct: 313 IPNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQI 372

Query: 364 PAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAAAL 422
           PAGS++VF   A+L T+  YDR+ + + +K+ G + G T L RM IG V+SI+    A  
Sbjct: 373 PAGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGF 432

Query: 423 VERKRLSVARAVGL---TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
           VE KR SVA   GL       +P+S   LIPQ+ L G  EAF+  G L+FF  ++P+ M+
Sbjct: 433 VEVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMR 492

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSI 538
           + +T LF   +S+G +VS+ LV +V K +    G  WL D N+NRGRL+ FY L+ +L  
Sbjct: 493 STATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQA 552

Query: 539 INLVIYLICA--VWYKP 553
           +NLV YL CA    YKP
Sbjct: 553 VNLVYYLWCAKIYTYKP 569

May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VV5|PTR16_ARATH Probable peptide/nitrate transporter At1g59740 OS=Arabidopsis thaliana GN=At1g59740 PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 335/561 (59%), Gaps = 20/561 (3%)

Query: 2   SWAVAD--AVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLP 59
           +W +A+  +VD++G P++P+K GG   A  VLG++  E +    +  NL+TY++  MH P
Sbjct: 21  NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query: 60  SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR 119
            + +ANIVT+F+GT F+  LLGG+L+D FLG + TI IF  V+  G  +L++   L QL+
Sbjct: 81  LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query: 120 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 179
           P  C      TCE+A GF+  + ++ALYL+ALG+G +K ++   G DQF +   K+  ++
Sbjct: 141 PPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRL 200

Query: 180 AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK 239
           + +F+  +F  S+G L+A+T+LV++Q      +G+G+ + AM M II  ++GT  +R K+
Sbjct: 201 SSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKR 260

Query: 240 SSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY------EDTPEASRIHHTEQFHFLDKAA 293
              S    I  VIVAAI KRK+  P +  ML+       D   +S + HT +F FLDKA 
Sbjct: 261 PRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKAC 320

Query: 294 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT 353
           I  +   +  +  +PW+LC+VT VE+VK +  L+PI+A+TI+F T  AQ+ TFSV+Q ++
Sbjct: 321 IKIQ---DTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSS 377

Query: 354 ME-RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLV 411
           M  R    F IP  SL       ++  + +YD  ++P  +K  G   G   L R+ IGL 
Sbjct: 378 MNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLF 437

Query: 412 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFI 471
           LS   M +AA++E+KR   +   G       +S+F + PQF + G  E F   G ++FF 
Sbjct: 438 LSTFSMVSAAMLEKKRRDSSVLDGRI-----LSIFWITPQFLIFGISEMFTAVGLIEFFY 492

Query: 472 TKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTG-SKGGGGWLADN-INRGRLDLF 529
            +S KGM++    L   + S GF+ SS LV+VV K+T  S    GWL +N +N+ RLDLF
Sbjct: 493 KQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLF 552

Query: 530 YGLLAILSIINLVIYLICAVW 550
           Y LLA+LS++N + YL  + W
Sbjct: 553 YWLLAVLSLLNFLSYLFWSRW 573

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
449443301	623	PREDICTED: nitrate transporter 1.4-like	0.993	0.916	0.792	0.0
449493693	623	PREDICTED: nitrate transporter 1.4-like	0.993	0.916	0.790	0.0
402810586	581	nitrate transporter [Cucumis sativus]	0.993	0.982	0.790	0.0
255566995	581	oligopeptide transporter, putative [Rici	0.996	0.986	0.823	0.0
297738942	576	unnamed protein product [Vitis vinifera]	1.0	0.998	0.810	0.0
225445474	580	PREDICTED: nitrate transporter 1.4-like	1.0	0.991	0.810	0.0
356563024	581	PREDICTED: nitrate transporter 1.4-like	0.996	0.986	0.783	0.0
356548591	581	PREDICTED: nitrate transporter 1.4-like	0.986	0.975	0.780	0.0
430736183	580	nitrate transporter NRT1.4B [Cucumis sat	0.993	0.984	0.792	0.0
449466528	599	PREDICTED: nitrate transporter 1.4-like	0.993	0.953	0.792	0.0

>gi|449443301|ref|XP_004139418.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/573 (79%), Positives = 503/573 (87%), Gaps = 2/573 (0%)

Query: 5   VADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSA 64
           VADAVDYKG PA+ SKTGGWVPAALV+GIELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 51  VADAVDYKGCPANRSKTGGWVPAALVVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 110

Query: 65  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 124
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 111 NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 170

Query: 125 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 184
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 171 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 230

Query: 185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 244
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 231 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 290

Query: 245 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 302
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 291 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 350

Query: 303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 362
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 351 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 410

Query: 363 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 422
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 411 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 470

Query: 423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 482
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 471 VEMKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 530

Query: 483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 542
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 531 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSTINFV 590

Query: 543 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 591 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493693|ref|XP_004159415.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/573 (79%), Positives = 503/573 (87%), Gaps = 2/573 (0%)

Query: 5   VADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSA 64
           VADAVDYKG PA+ SKTGGWVPAAL++GIELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 51  VADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 110

Query: 65  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 124
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 111 NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 170

Query: 125 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 184
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 171 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 230

Query: 185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 244
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 231 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 290

Query: 245 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 302
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 291 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 350

Query: 303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 362
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 351 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 410

Query: 363 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 422
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 411 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 470

Query: 423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 482
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 471 VEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 530

Query: 483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 542
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 531 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINFV 590

Query: 543 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 591 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 623

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402810586|gb|AFR11354.1| nitrate transporter [Cucumis sativus]

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/573 (79%), Positives = 503/573 (87%), Gaps = 2/573 (0%)

Query: 5   VADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSA 64
           VADAVDYKG PA+ SKTGGWVPAAL++GIELCERLSTMGIAVNLVTYLVGT+HLPSA SA
Sbjct: 9   VADAVDYKGCPANRSKTGGWVPAALIVGIELCERLSTMGIAVNLVTYLVGTLHLPSANSA 68

Query: 65  NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK 124
           NIVTDFMGT FLL +LGGFLAD+FLGRYKTIAIFA++QTLGTG LA++TKL QL P PC 
Sbjct: 69  NIVTDFMGTCFLLSMLGGFLADSFLGRYKTIAIFASIQTLGTGTLAVITKLPQLHPPPCH 128

Query: 125 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS 184
             A+  C+QA+GFQMG++Y+ LY+IALGTGG+KSSVSGFGTDQFDEKD+KEK QMAYFF+
Sbjct: 129 PIASKNCKQANGFQMGMIYLPLYIIALGTGGIKSSVSGFGTDQFDEKDDKEKAQMAYFFN 188

Query: 185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 244
           RFF F+S GTL+AVTVLVY+QDE+ RS  YGICSV+MF AI+IFL GTKRYRYK S GSP
Sbjct: 189 RFFLFVSSGTLLAVTVLVYLQDEVGRSWAYGICSVSMFTAILIFLCGTKRYRYKISMGSP 248

Query: 245 IVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE--A 302
           IVHIFQV+VAAI KRKM+L  N  +LYED+   SRI HT QF FLDKAAIVA+GDFE   
Sbjct: 249 IVHIFQVLVAAINKRKMELQLNATLLYEDSAATSRIDHTNQFQFLDKAAIVADGDFEKSV 308

Query: 303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ 362
            S PNPWKLCSVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSV QA+TMERS+G F+
Sbjct: 309 SSAPNPWKLCSVTRVEEVKMMMRLLPIWATTIIFWTTYAQMITFSVVQASTMERSLGNFK 368

Query: 363 IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL 422
           IPAGSL VFFV+AILITLA YDRLIMPLWKKWKG+PGFTNLQR+AIGL+LS  GMAAAAL
Sbjct: 369 IPAGSLPVFFVAAILITLAFYDRLIMPLWKKWKGQPGFTNLQRIAIGLILSTFGMAAAAL 428

Query: 423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS 482
           VE KRLSVA+AVG +TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMKTMS
Sbjct: 429 VEIKRLSVAKAVGRSTATLPLSVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMKTMS 488

Query: 483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV 542
           TGLFLTTLSLGFFVSSFLVAVVK VTGS  G GWLADNIN  RLD FYGLL ILS IN V
Sbjct: 489 TGLFLTTLSLGFFVSSFLVAVVKSVTGSMDGQGWLADNINYARLDCFYGLLTILSAINFV 548

Query: 543 IYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
            +L+CA+WYKP+KPK  ++MET   G S  EKC
Sbjct: 549 AFLVCAIWYKPQKPKQLLEMETSTNGGSGAEKC 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566995|ref|XP_002524480.1| oligopeptide transporter, putative [Ricinus communis] gi|223536268|gb|EEF37920.1| oligopeptide transporter, putative [Ricinus communis]

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/579 (82%), Positives = 524/579 (90%), Gaps = 6/579 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           MSWAVADAVDYKG PAD SKTGGW+PAALVLGIE+CERLSTMGI VNLVTYL+GTMHLPS
Sbjct: 5   MSWAVADAVDYKGFPADRSKTGGWLPAALVLGIEVCERLSTMGIGVNLVTYLIGTMHLPS 64

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           ATSAN+VTDFMGTSFLLCLLGGFLAD+FLGRYKTIAIFA VQTLGTGMLA +TK+ QLRP
Sbjct: 65  ATSANVVTDFMGTSFLLCLLGGFLADSFLGRYKTIAIFALVQTLGTGMLAAITKIPQLRP 124

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PC     ++C QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK+QM 
Sbjct: 125 PPCN--TNNSCVQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKSQMN 182

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFF RFFFFIS+GTLMAVTVLVY+QDE+ RS GYGICSV+MF+AI+IFL+GTKRYRYKKS
Sbjct: 183 YFFHRFFFFISIGTLMAVTVLVYVQDEVGRSWGYGICSVSMFVAILIFLSGTKRYRYKKS 242

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 300
           SGSPIVHIFQVI AA+KKR MDLP NV +LYE+T EA+RI HT+QFHFLDKAAIVAEGDF
Sbjct: 243 SGSPIVHIFQVIAAAVKKRHMDLPYNVSLLYENTLEAARIQHTDQFHFLDKAAIVAEGDF 302

Query: 301 -EAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 359
              G+TPNPWKLC VT VEEVKM+  +LPIWATTI+FWTTYAQMITFSVEQA+TMERSIG
Sbjct: 303 ANGGTTPNPWKLCPVTRVEEVKMMVSMLPIWATTILFWTTYAQMITFSVEQASTMERSIG 362

Query: 360 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 419
            FQIPAGSLTVFFV+AILI+LA YDR+IMPLWK WKGKPGFTNLQR++IGLVLS +GMAA
Sbjct: 363 SFQIPAGSLTVFFVAAILISLAAYDRIIMPLWKTWKGKPGFTNLQRISIGLVLSTLGMAA 422

Query: 420 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
           AALVERKRLSVA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFIT+SPKGMK
Sbjct: 423 AALVERKRLSVAKAVGGDTLTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITQSPKGMK 482

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGG-GWLADNINRGRLDLFYGLLAILSI 538
           TMSTGLFLTTLSLGFFVSSFLV VVK+VTGS GGG GWLADNIN GRLD FYGLLA+L +
Sbjct: 483 TMSTGLFLTTLSLGFFVSSFLVMVVKRVTGSNGGGQGWLADNINYGRLDCFYGLLAVLGV 542

Query: 539 INLVIYLICAVWYKPKKP--KAGIQMETYVKGSSAEEKC 575
           +N V+YLICA+WYKP+     A +QME    GS AEEKC
Sbjct: 543 VNFVVYLICALWYKPRNSAKSAALQMENVGNGSLAEEKC 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738942|emb|CBI28187.3| unnamed protein product [Vitis vinifera]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/576 (81%), Positives = 522/576 (90%), Gaps = 1/576 (0%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           MSW VADAVDYKG PAD SKTGGWVPAAL+LGIE+CERLSTMGIAVNLVTYLV TMHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 60

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           ATSAN VTDFMGTSFLLCLLGGFLAD+FLGR++TIAIFA VQ +GTGMLA++T+L QL+P
Sbjct: 61  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 120

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PCK T T TC+QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 121 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 180

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFFSRFFFFIS GTLMAVTVLVYIQDE+SRS+GYGIC V+M +AI+++ +GTKRYRYKKS
Sbjct: 181 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 240

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVA-EGD 299
            GSPIVHI QVIVAA++KRKMDLP N  +LYED+ E SRI HT+QF  LDKAAI+A E D
Sbjct: 241 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAGEFD 300

Query: 300 FEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 359
             A S PNPWKLCSVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSVEQA+TMERSIG
Sbjct: 301 KTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSIG 360

Query: 360 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 419
            FQIPAGSLTVFFV+AILITLAVYDR IMP+WKKW+GKPGF++LQR+A+GL+LSIVGM A
Sbjct: 361 NFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMTA 420

Query: 420 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
           AAL ER+RLSVA+AVG  TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMK
Sbjct: 421 AALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMK 480

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 539
           TMSTGLFL+TLSLGFFVSSFLV+VVK+VTGS+ G GWLADNIN GRLD FYGLLAILS I
Sbjct: 481 TMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSFI 540

Query: 540 NLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
           N  ++L+CAVWYKP+KP  G+QMET   GS  EEKC
Sbjct: 541 NFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEKC 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445474|ref|XP_002281975.1| PREDICTED: nitrate transporter 1.4-like [Vitis vinifera]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/576 (81%), Positives = 522/576 (90%), Gaps = 1/576 (0%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           MSW VADAVDYKG PAD SKTGGWVPAAL+LGIE+CERLSTMGIAVNLVTYLV TMHLPS
Sbjct: 5   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEICERLSTMGIAVNLVTYLVSTMHLPS 64

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           ATSAN VTDFMGTSFLLCLLGGFLAD+FLGR++TIAIFA VQ +GTGMLA++T+L QL+P
Sbjct: 65  ATSANTVTDFMGTSFLLCLLGGFLADSFLGRFRTIAIFATVQAMGTGMLAIITRLPQLQP 124

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PCK T T TC+QA+GFQMG+LY+ALYLIALGTGGLKSSVSGFGTDQFD+KDEKE++QM 
Sbjct: 125 PPCKNTPTQTCKQANGFQMGILYLALYLIALGTGGLKSSVSGFGTDQFDDKDEKEQSQMI 184

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFFSRFFFFIS GTLMAVTVLVYIQDE+SRS+GYGIC V+M +AI+++ +GTKRYRYKKS
Sbjct: 185 YFFSRFFFFISTGTLMAVTVLVYIQDEVSRSLGYGICCVSMLIAILVYFSGTKRYRYKKS 244

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVA-EGD 299
            GSPIVHI QVIVAA++KRKMDLP N  +LYED+ E SRI HT+QF  LDKAAI+A E D
Sbjct: 245 VGSPIVHISQVIVAAMRKRKMDLPFNASLLYEDSAEGSRIQHTDQFRCLDKAAILAGEFD 304

Query: 300 FEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG 359
             A S PNPWKLCSVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSVEQA+TMERSIG
Sbjct: 305 KTASSDPNPWKLCSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVEQASTMERSIG 364

Query: 360 RFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA 419
            FQIPAGSLTVFFV+AILITLAVYDR IMP+WKKW+GKPGF++LQR+A+GL+LSIVGM A
Sbjct: 365 NFQIPAGSLTVFFVAAILITLAVYDRFIMPMWKKWRGKPGFSSLQRIALGLILSIVGMTA 424

Query: 420 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
           AAL ER+RLSVA+AVG  TATLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SPKGMK
Sbjct: 425 AALAERRRLSVAKAVGDNTATLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITQSPKGMK 484

Query: 480 TMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSII 539
           TMSTGLFL+TLSLGFFVSSFLV+VVK+VTGS+ G GWLADNIN GRLD FYGLLAILS I
Sbjct: 485 TMSTGLFLSTLSLGFFVSSFLVSVVKRVTGSRDGQGWLADNINYGRLDCFYGLLAILSFI 544

Query: 540 NLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
           N  ++L+CAVWYKP+KP  G+QMET   GS  EEKC
Sbjct: 545 NFAVFLVCAVWYKPQKPNDGMQMETMANGSCPEEKC 580

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563024|ref|XP_003549766.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/583 (78%), Positives = 515/583 (88%), Gaps = 10/583 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           MSW VADAVDYKG PAD SKTGGWVPAAL+LGIE+ ERLSTMGIAVNLVTY++  MHLPS
Sbjct: 1   MSWTVADAVDYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPS 60

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           +T+AN VTDFMGTSFLLCLLGGFLAD+FLGRYKTI IFA++QTLGT  LA+ TKL  LRP
Sbjct: 61  STAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRP 120

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PC    + +C+QA+GFQMG+LY++LYLIALGTGGLKSSVSGFG+DQFDEKDEKEK+QMA
Sbjct: 121 PPCHAN-SDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMA 179

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFF+RFFFFIS GTL AVTVLVY+QDE+SRS+ YGICSV+M +AII+FL+GTKRYRYK+S
Sbjct: 180 YFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRS 239

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 300
            GSPIVHIFQVI A+IKKRKM LP NVG LYEDTPEASRI HTEQF FL+KAAIVAE DF
Sbjct: 240 LGSPIVHIFQVIAASIKKRKMQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEDDF 299

Query: 301 E---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
           E    GS PNPWKLCS+T VEEVKM+ RLLP+WATTIIFWT YAQ+ITFSVEQA+TMER+
Sbjct: 300 ETNLCGSGPNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQLITFSVEQASTMERN 359

Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
           IG FQIPAGS+TVFFV+AILITLAVYDRLIMPLWKKW GKPGFT+LQR+AIGLV SI GM
Sbjct: 360 IGSFQIPAGSVTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGM 419

Query: 418 AAAALVERKRLSVARAV---GLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 474
           AAA++ ERKRLSVA++V      T TLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+S
Sbjct: 420 AAASVCERKRLSVAKSVSGGNQATTTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRS 479

Query: 475 PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLA 534
           PKGMKTMSTGLFLTTLSLGFF SSFLV+VVKKVTG++ G GWLAD+IN+GRLDLFY LL 
Sbjct: 480 PKGMKTMSTGLFLTTLSLGFFFSSFLVSVVKKVTGTRDGQGWLADSINKGRLDLFYALLT 539

Query: 535 ILSIINLVIYLICAVWYKPKKPK--AGIQMETYVKGSSAEEKC 575
           ILS +N   + +CAVW+KPKKPK  A +QM   V GS+AEEKC
Sbjct: 540 ILSFVNFAAFAVCAVWFKPKKPKQPAAMQMGP-VNGSTAEEKC 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548591|ref|XP_003542684.1| PREDICTED: nitrate transporter 1.4-like [Glycine max]

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/578 (78%), Positives = 507/578 (87%), Gaps = 11/578 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           MSW VADAV+YKG PAD SKTGGWVPAAL+LGIE+ ERLSTMGIAVNLVTY++  MHLPS
Sbjct: 5   MSWTVADAVNYKGFPADRSKTGGWVPAALILGIEIVERLSTMGIAVNLVTYMISIMHLPS 64

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           +T+AN VTDFMGTSFLLCLLGGFLAD+FLGRYKTI IFA++QTLGT  LA+ TKL  LRP
Sbjct: 65  STAANTVTDFMGTSFLLCLLGGFLADSFLGRYKTIGIFASIQTLGTATLAISTKLPGLRP 124

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PC    + +C+QA+GFQMG+LY++LYLIALGTGGLKSSVSGFG+DQFDEKDEKEK+QMA
Sbjct: 125 PPCHAN-SDSCKQANGFQMGILYLSLYLIALGTGGLKSSVSGFGSDQFDEKDEKEKSQMA 183

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFF+RFFFFIS GTL AVTVLVY+QDE+SRS+ YGICSV+M +AII+FL+GTKRYRYK+S
Sbjct: 184 YFFNRFFFFISFGTLAAVTVLVYLQDEVSRSLAYGICSVSMIIAIIVFLSGTKRYRYKRS 243

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF 300
            GSPIVHIFQVI A+IKKRK  LP NVG LYEDTPEASRI HTEQF FL+KAAIVAEGDF
Sbjct: 244 LGSPIVHIFQVIAASIKKRKRQLPYNVGSLYEDTPEASRIEHTEQFRFLEKAAIVAEGDF 303

Query: 301 E---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
           E    GS  NPWKLCS+T VEEVKM+ RLLP+WATTIIFWT YAQMITFSVEQA+TMER+
Sbjct: 304 ETNVCGSESNPWKLCSLTRVEEVKMMVRLLPVWATTIIFWTIYAQMITFSVEQASTMERN 363

Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
           IG FQIPAGSLTVFFV+AILITLAVYDRLIMPLWKKW GKPGFT+LQR+AIGLV SI GM
Sbjct: 364 IGSFQIPAGSLTVFFVAAILITLAVYDRLIMPLWKKWNGKPGFTDLQRIAIGLVFSIFGM 423

Query: 418 AAAALVERKRLSVARAV--GLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 475
           AAA++ ERKRLS A++V  G    TLP+SVFLLIPQFFLVG+GEAFIYTGQLDFFIT+SP
Sbjct: 424 AAASVCERKRLSAAKSVSGGNQATTLPISVFLLIPQFFLVGSGEAFIYTGQLDFFITRSP 483

Query: 476 KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAI 535
           KGMKTMSTGLFLTTLSLGFF+SSFLV+VVKKVTG++ G GWLADNIN+GRLDLFY LL I
Sbjct: 484 KGMKTMSTGLFLTTLSLGFFISSFLVSVVKKVTGTRDGQGWLADNINKGRLDLFYALLTI 543

Query: 536 LSIINLVIYLICAVWYKPKKPKA-----GIQMETYVKG 568
           LS IN V + +CA+W+KPKKPK      G Q    V+G
Sbjct: 544 LSFINFVAFAVCALWFKPKKPKQPAMQMGPQQRKSVEG 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|430736183|gb|AGA60121.1| nitrate transporter NRT1.4B [Cucumis sativus]

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/579 (79%), Positives = 506/579 (87%), Gaps = 8/579 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           +SW VADAVDYKG PAD SKTGGW+PAAL+LGIE+CERLSTMGIAVNLVTYL G MHLPS
Sbjct: 6   LSWTVADAVDYKGFPADKSKTGGWIPAALILGIEICERLSTMGIAVNLVTYLGGVMHLPS 65

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           A SANIVTDFMGT FLLCLLGGFLAD+FLGRY TI I A +QTLGT  LA+ TKL QLRP
Sbjct: 66  AASANIVTDFMGTCFLLCLLGGFLADSFLGRYYTILISALIQTLGTAALAVSTKLPQLRP 125

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PC    T TC++A+GFQMG+LY+ALYLIALGTGGLKSS+SGFGTDQFD+ DEKEK +MA
Sbjct: 126 PPCD--GTKTCKEANGFQMGILYLALYLIALGTGGLKSSISGFGTDQFDDTDEKEKAKMA 183

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFF+RFFFFIS GTLMAVTVLVYIQDE+ RS  YGICSV+M  AI++FL+GTKRYRYKKS
Sbjct: 184 YFFNRFFFFISTGTLMAVTVLVYIQDEVGRSWAYGICSVSMLGAILLFLSGTKRYRYKKS 243

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPE-ASRIHHTEQFHFLDKAAIVAEGD 299
            GSP+VHI QVI AAIKKRK++LP NVG+LYED+P+ ASRI HT+QF FLDKAAIVAEGD
Sbjct: 244 MGSPVVHILQVIAAAIKKRKLELPQNVGLLYEDSPDQASRIEHTKQFQFLDKAAIVAEGD 303

Query: 300 FE---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
           FE   A S  NPWKL SVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSV+QA+TMER
Sbjct: 304 FEKHGAVSALNPWKLSSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVQQASTMER 363

Query: 357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG 416
           SIG FQIPAGSLTVFFV+AILITL VYDRLIMPLWKKWKGK GFTN+QRMAIGLVLSI+G
Sbjct: 364 SIGSFQIPAGSLTVFFVAAILITLGVYDRLIMPLWKKWKGKQGFTNIQRMAIGLVLSILG 423

Query: 417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 476
           MAAAAL E KRL VA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK
Sbjct: 424 MAAAALAESKRLGVAKAVGGDTTTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 483

Query: 477 GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAIL 536
           GMKTMSTGLFL+TLSLGFF+SSFLV+VVK+VTG+  G GWLADN+N GRLD FYGLL IL
Sbjct: 484 GMKTMSTGLFLSTLSLGFFISSFLVSVVKRVTGND-GEGWLADNVNYGRLDCFYGLLTIL 542

Query: 537 SIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
           SIIN V +L+C +WY P+K K   Q    V G+ AEEKC
Sbjct: 543 SIINFVAFLVCVIWYMPQKRK-DFQKNGIVNGNLAEEKC 580

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466528|ref|XP_004150978.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus] gi|449522758|ref|XP_004168393.1| PREDICTED: nitrate transporter 1.4-like [Cucumis sativus]

 Score =  859 bits (2220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/579 (79%), Positives = 506/579 (87%), Gaps = 8/579 (1%)

Query: 1   MSWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS 60
           +SW VADAVDYKG PAD SKTGGW+PAAL+LGIE+CERLSTMGIAVNLVTYL G MHLPS
Sbjct: 25  LSWTVADAVDYKGFPADKSKTGGWIPAALILGIEICERLSTMGIAVNLVTYLGGVMHLPS 84

Query: 61  ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP 120
           A SANIVTDFMGT FLLCLLGGFLAD+FLGRY TI I A +QTLGT  LA+ TKL QLRP
Sbjct: 85  AASANIVTDFMGTCFLLCLLGGFLADSFLGRYYTILISALIQTLGTAALAVSTKLPQLRP 144

Query: 121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA 180
            PC    T TC++A+GFQMG+LY+ALYLIALGTGGLKSS+SGFGTDQFD+ DEKEK +MA
Sbjct: 145 PPCD--GTKTCKEANGFQMGILYLALYLIALGTGGLKSSISGFGTDQFDDTDEKEKAKMA 202

Query: 181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS 240
           YFF+RFFFFIS GTLMAVTVLVYIQDE+ RS  YGICSV+M  AI++FL+GTKRYRYKKS
Sbjct: 203 YFFNRFFFFISTGTLMAVTVLVYIQDEVGRSWAYGICSVSMLGAILLFLSGTKRYRYKKS 262

Query: 241 SGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPE-ASRIHHTEQFHFLDKAAIVAEGD 299
            GSP+VHI QVI AAIKKRK++LP NVG+LYED+P+ ASRI HT+QF FLDKAAIVAEGD
Sbjct: 263 MGSPVVHILQVIAAAIKKRKLELPQNVGLLYEDSPDQASRIEHTKQFQFLDKAAIVAEGD 322

Query: 300 FE---AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
           FE   A S  NPWKL SVT VEEVKM+ARLLPIWATTIIFWTTYAQMITFSV+QA+TMER
Sbjct: 323 FEKHGAVSALNPWKLSSVTRVEEVKMMARLLPIWATTIIFWTTYAQMITFSVQQASTMER 382

Query: 357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG 416
           SIG FQIPAGSLTVFFV+AILITL VYDRLIMPLWKKWKGK GFTN+QRMAIGLVLSI+G
Sbjct: 383 SIGSFQIPAGSLTVFFVAAILITLGVYDRLIMPLWKKWKGKQGFTNIQRMAIGLVLSILG 442

Query: 417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 476
           MAAAAL E KRL VA+AVG  T TLP+SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK
Sbjct: 443 MAAAALAESKRLGVAKAVGGDTTTLPISVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK 502

Query: 477 GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAIL 536
           GMKTMSTGLFL+TLSLGFF+SSFLV+VVK+VTG+  G GWLADN+N GRLD FYGLL IL
Sbjct: 503 GMKTMSTGLFLSTLSLGFFISSFLVSVVKRVTGND-GEGWLADNVNYGRLDCFYGLLTIL 561

Query: 537 SIINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEEKC 575
           SIIN V +L+C +WY P+K K   Q    V G+ AEEKC
Sbjct: 562 SIINFVAFLVCVIWYMPQKRK-DFQKNGIVNGNLAEEKC 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	575
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.986	0.982	0.685	4.7e-206
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.96	0.935	0.513	6.6e-145
TAIR|locus:2089935	590	AT3G21670 [Arabidopsis thalian	0.925	0.901	0.457	9.2e-123
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.956	0.940	0.395	1.2e-106
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.944	0.952	0.395	5.3e-104
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.951	0.927	0.376	2.9e-103
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.942	0.950	0.388	6e-103
TAIR|locus:2026884	596	AT1G68570 [Arabidopsis thalian	0.933	0.901	0.397	1.1e-96
TAIR|locus:2033776	614	NRT1.5 "nitrate transporter 1.	0.944	0.884	0.360	2.7e-93
TAIR|locus:2025886	591	AT1G59740 [Arabidopsis thalian	0.940	0.915	0.358	1e-91

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 1993 (706.6 bits), Expect = 4.7e-206, P = 4.7e-206
 Identities = 395/576 (68%), Positives = 451/576 (78%)

Query:     2 SWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA 61
             SW VADAVDYKG PAD SKTGGW+ AAL+LGIE+ ERLSTMGIAVNLVTYL+ TMHLPS+
Sbjct:     6 SWTVADAVDYKGRPADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSS 65

Query:    62 TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 121
             TSANIVTDFMGTSFLLCLLGGFLAD+FLGR+KTI IF+ +Q LGTG LA+ TKL +LRP 
Sbjct:    66 TSANIVTDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALGTGALAVATKLPELRPP 125

Query:   122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 181
              C       C  A+ FQM +LY++LYLIALGTGGLKSS+SGFG+DQFD+KD KEK  MA+
Sbjct:   126 TCHHG--EACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAF 183

Query:   182 XXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 241
                     IS+GTL+AVTVLVY+QDE+ RS  YGIC+V+M +AI+IFL GTKRYRYKKS 
Sbjct:   184 FFNRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQ 243

Query:   242 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFE 301
             GSP+V IFQVI AA +KRKM+LP ++  LYED PE  RI HT+QFH LDKAAIVAEGDFE
Sbjct:   244 GSPVVQIFQVIAAAFRKRKMELPQSIVYLYEDNPEGIRIEHTDQFHLLDKAAIVAEGDFE 303

Query:   302 A---G-STPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
                 G + PNPWKL SVT VEEVKM+ RLLPIWATTIIFWTTYAQMITFSVEQA+TM R+
Sbjct:   304 QTLDGVAIPNPWKLSSVTKVEEVKMMVRLLPIWATTIIFWTTYAQMITFSVEQASTMRRN 363

Query:   358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
             IG F+IPAGSLTVFFV+AILITLAVYDR IMP WKKWKGKPGF++LQR+AIGLVLS  GM
Sbjct:   364 IGSFKIPAGSLTVFFVAAILITLAVYDRAIMPFWKKWKGKPGFSSLQRIAIGLVLSTAGM 423

Query:   418 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 477
             AAAALVE+KRLSVA++   +  TLP+SVFLL+PQFFLVGAGEAFIYTGQLDFFIT+SPKG
Sbjct:   424 AAAALVEQKRLSVAKSS--SQKTLPISVFLLVPQFFLVGAGEAFIYTGQLDFFITQSPKG 481

Query:   478 MKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILS 537
             MK                                    WLADNIN GRLD FY LL ILS
Sbjct:   482 MKTMSTGLFLTTLSLGFFVSSFLVSIVKRVTSTSTDVGWLADNINHGRLDYFYWLLVILS 541

Query:   538 IINLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 573
              IN V+Y+ICA+W+KP K K  ++ E   KG S E+
Sbjct:   542 GINFVVYIICALWFKPTKGKDSVEKENG-KGFSVED 576

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
 Identities = 294/573 (51%), Positives = 384/573 (67%)

Query:     7 DAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 66
             DA D++G PAD SKTGGW  AA++L IE  ERL+T+GI VNLVTYL GTMHL +AT+AN 
Sbjct:    14 DAWDFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANT 73

Query:    67 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 126
             VT+F+GTSF+LCLLGGF+ADTFLGRY TIAIFAA+Q  G  +L + T +  LRP  C  T
Sbjct:    74 VTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPT 133

Query:   127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXX 186
              +  CEQASG Q+ VLY+ALYL ALGTGG+K+SVSGFG+DQFDE + KE+++M Y     
Sbjct:   134 TSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRF 193

Query:   187 XXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV 246
                I++G+L+AVTVLVY+QD++ R  GYGIC+ A+ +A+ +FLAGT RYR+KK  GSP+ 
Sbjct:   194 FFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSPMT 253

Query:   247 HIFQVIVAAIKKRKMDLPCNVGMLYE-D---TPEAS-----RIHHTEQFHFLDKAAIVAE 297
              +  VIVAA + RK++LP +   LY+ D     E S     ++ HTEQF  LDKAAI   
Sbjct:   254 QVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI--- 310

Query:   298 GDFEAGSTPN---PWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTM 354
              D EAG T N    W L ++T VEEVK + R+LPIWAT I+FWT +AQ+ T SV Q+ T+
Sbjct:   311 RDQEAGVTSNVFNKWTLSTLTDVEEVKQIVRMLPIWATCILFWTVHAQLTTLSVAQSETL 370

Query:   355 ERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLS 413
             +RSIG F+IP  S+ VF+V  +L+T AVYDR+ + L KK    P G   LQR+ +GL   
Sbjct:   371 DRSIGSFEIPPASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFG 430

Query:   414 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473
              + MA AALVE KRL  A A G T  TLP+  +LLIPQ+ +VG GEA IYTGQLDFF+ +
Sbjct:   431 SMAMAVAALVELKRLRTAHAHGPTVKTLPLGFYLLIPQYLIVGIGEALIYTGQLDFFLRE 490

Query:   474 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 533
              PKGMK                                    W+AD++N+GRL  FY L+
Sbjct:   491 CPKGMKGMSTGLLLSTLALGFFFSSVLVTIVEKFTGKAHP--WIADDLNKGRLYNFYWLV 548

Query:   534 AILSIINLVIYLICAVWY--KPKK-PKAGIQME 563
             A+L  +N +I+L+ + WY  K K+  + GI+++
Sbjct:   549 AVLVALNFLIFLVFSKWYVYKEKRLAEVGIELD 581

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2089935 AT3G21670 [Arabidopsis thaliana (taxid:3702)]

 Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
 Identities = 256/559 (45%), Positives = 347/559 (62%)

Query:     7 DAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANI 66
             +A DY+G+P D SKTGGW+ A L+LG EL ER+  MGI++NLVTYLVG +H+ SA SA I
Sbjct:    16 EAYDYRGNPPDKSKTGGWLGAGLILGSELSERICVMGISMNLVTYLVGDLHISSAKSATI 75

Query:    67 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET 126
             VT+FMGT  LL LLGGFLAD  LGRYK +AI A+V  LG  +L + T +  +RP  C + 
Sbjct:    76 VTNFMGTLNLLGLLGGFLADAKLGRYKMVAISASVTALGVLLLTVATTISSMRPPICDDF 135

Query:   127 AT--HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXX 184
                 H C +A+G Q+ +LY+ALY IALG GG+KS+VSGFG+DQFD  D KE+ QM +   
Sbjct:   136 RRLHHQCIEANGHQLALLYVALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKQMIFFFN 195

Query:   185 XXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSP 244
                  IS+G+L AV  LVY+QD + R  GYGI +  M +A I+ L GTKRYR+KK  GSP
Sbjct:   196 RFYFSISVGSLFAVIALVYVQDNVGRGWGYGISAATMVVAAIVLLCGTKRYRFKKPKGSP 255

Query:   245 IVHIFQVIVAAIKKRKMDLPCNVGML--YEDTPEASRIHHTEQFHFLDKAAIV------A 296
                I++V   A KKRK   P +  +L  Y++T     + HTE    LDKAAI       +
Sbjct:   256 FTTIWRVGFLAWKKRKESYPAHPSLLNGYDNTT----VPHTEMLKCLDKAAISKNESSPS 311

Query:   297 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
               DFE     +PW + +VT VEEVK+V +L+PIWAT I+FWT Y+QM TF+VEQAT M+R
Sbjct:   312 SKDFEE---KDPWIVSTVTQVEEVKLVMKLVPIWATNILFWTIYSQMTTFTVEQATFMDR 368

Query:   357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSIV 415
              +G F +PAGS + F +  IL+  ++ +R+ +PL ++   KP G T+LQR+ +GLV S+ 
Sbjct:   369 KLGSFTVPAGSYSAFLILTILLFTSLNERVFVPLTRRLTKKPQGITSLQRIGVGLVFSMA 428

Query:   416 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP 475
              MA AA++E  R   A           +S F L+PQ+FLVGAGEAF Y GQL+FFI ++P
Sbjct:   429 AMAVAAVIENARREAA-----VNNDKKISAFWLVPQYFLVGAGEAFAYVGQLEFFIREAP 483

Query:   476 KGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAI 535
             + MK                                    WL  N+N+ RL+ FY LL +
Sbjct:   484 ERMKSMSTGLFLSTISMGFFVSSLLVSLVDRVTDKS----WLRSNLNKARLNYFYWLLVV 539

Query:   536 LSIINLVIYLICAVWYKPK 554
             L  +N +I+++ A+ ++ K
Sbjct:   540 LGALNFLIFIVFAMKHQYK 558

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 222/562 (39%), Positives = 325/562 (57%)

Query:     3 WAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSAT 62
             +A   +VD+ G+P    KTG W     +LG E CERL+  GIA NL+TYL   +H  + +
Sbjct:    24 YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query:    63 SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP 122
             +A  VT + GT +L  L+G  LAD + GRY TIA F+ +  +G   L +   +  L+P  
Sbjct:    84 AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE 143

Query:   123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYX 182
             C       C  A+  Q  + +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A  
Sbjct:   144 C---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASF 200

Query:   183 XXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG 242
                    I++G L++ ++LV+IQ+     +G+GI +V M +AI  F  GT  YR++K  G
Sbjct:   201 FNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGG 260

Query:   243 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVA 296
             SPI  I QV+VA+ +K  + +P +  +LYE   + S      +I HT+   +LDKAA+++
Sbjct:   261 SPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query:   297 EGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
             E + ++G   N W+LC+VT VEE+K++ R+ PIWA+ IIF   YAQM T  V+Q   M  
Sbjct:   321 EEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAMNC 380

Query:   357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIV 415
              IG FQ+P  +L  F  ++++I + +YDR I+PL +K+ G   GFT +QRM IGL +S++
Sbjct:   381 KIGSFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVL 440

Query:   416 GMAAAALVERKRLSVARAVGLTT--ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473
              MAAAA+VE  RL +A  +GL    A +P+SV   IPQ+F++GA E F + GQL+FF  +
Sbjct:   441 CMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQ 500

Query:   474 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 533
             SP  M+                                    W++DN+N G LD F+ LL
Sbjct:   501 SPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLL 560

Query:   534 AILSIINLVIYLICAVWYKPKK 555
             A LS++N+ +Y   A  YK KK
Sbjct:   561 AGLSLVNMAVYFFSAARYKQKK 582

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 220/556 (39%), Positives = 316/556 (56%)

Query:     9 VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
             VD   +PA+  KTG W     +LG E CERL+  G+  NLV YL   ++  +AT+AN VT
Sbjct:    13 VDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVT 72

Query:    69 DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
             ++ GT ++  L+G F+AD +LGRY TIA F  +   G  +L +   +  L+P  C     
Sbjct:    73 NWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCN---A 129

Query:   129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXX 188
              TC   S  Q  V ++ALY+IALGTGG+K  VS FG DQFDE DE EK + +        
Sbjct:   130 DTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYF 188

Query:   189 XISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
              I++G L+A TVLV+IQ  +    G+G+ +VAM +A+  F  G++ YR ++  GSP+  I
Sbjct:   189 SINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSPLTRI 248

Query:   249 FQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIH------HTEQFHFLDKAAIVAEGDFEA 302
             FQVIVAA +K  + +P +  +L+E   + S I       HT+   F DKAA+ ++ D   
Sbjct:   249 FQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAAVESQSDSIK 308

Query:   303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-F 361
                 NPW+LCSVT VEE+K +  LLP+WAT I+F T Y+QM T  V Q  TM++ +G+ F
Sbjct:   309 DGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNTMDQHMGKNF 368

Query:   362 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLSIVGMAAA 420
             +IP+ SL++F   ++L    VYD+ I+PL +K+ + + GFT LQRM IGLV+SI  M  A
Sbjct:   369 EIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLVVSIFAMITA 428

Query:   421 ALVERKRLSVARAVGL-TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
              ++E  RL   +         + +S+F  IPQ+ L+G  E F + GQL+FF  ++P  M+
Sbjct:   429 GVLEVVRLDYVKTHNAYDQKQIHMSIFWQIPQYLLIGCAEVFTFIGQLEFFYDQAPDAMR 488

Query:   480 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILSII 539
                                                 W+ DN+NRG LD F+ LLA LS +
Sbjct:   489 SLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFL 548

Query:   540 NLVIYLICAVWYKPKK 555
             N ++YL  +  YK KK
Sbjct:   549 NFLVYLWISKRYKYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 211/561 (37%), Positives = 324/561 (57%)

Query:     2 SWAVADAVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA 61
             S A   ++D  G+P    KTG W     +LG E CERL+  GIA NL+TY    +H  + 
Sbjct:    34 STAEDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNV 93

Query:    62 TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR 121
             ++A+ V  + GT ++  L+G  +AD++ GRY TIA F+A+  +G  +L +   L  L+P 
Sbjct:    94 SAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPA 153

Query:   122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY 181
              C   A   C  A+  Q  V +  LYLIALGTGG+K  VS FG DQFD+ D +E+ + A 
Sbjct:   154 ACAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKAS 213

Query:   182 XXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSS 241
                     I++G+ ++ T+LV++Q+ +   +G+ I +V M ++I  F  GT  YR++K  
Sbjct:   214 FFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPG 273

Query:   242 GSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIV 295
             GSPI  + QV+VAA +K K++LP ++  LYE   + S      +I HT+ + FLDKAA++
Sbjct:   274 GSPITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVI 333

Query:   296 AEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTME 355
             +E + ++G+  NPWKLC+VT VEEVK + R+ PIWA+ I++   Y+Q+ T  V+Q  +M 
Sbjct:   334 SEYESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMN 393

Query:   356 RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GFTNLQRMAIGLVLSI 414
             R I  F+IP  S  VF    +LI++ +YDR ++P  +++ G P G T+LQRM IGL LS+
Sbjct:   394 RIIRSFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSV 453

Query:   415 VGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS 474
             + +AAAA+VE  RL +A+        + +S+F  IPQ+ L+G  E F + G+++FF  +S
Sbjct:   454 LSIAAAAIVETVRLQLAQDF------VAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDES 507

Query:   475 PKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLA 534
             P  M+                                    W+ D++N+G LD F+ LL 
Sbjct:   508 PDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLV 567

Query:   535 ILSIINLVIY-LICAVWYKPK 554
              L ++N+ +Y LIC    K K
Sbjct:   568 SLGLVNIPVYALICVKHTKKK 588

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 216/556 (38%), Positives = 324/556 (58%)

Query:     9 VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
             +D    PA+ +KTG W     +LG E CERL+  G++ NL+ YL   M++ + +++  V+
Sbjct:    14 LDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVS 73

Query:    69 DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
             ++ GT +   L+G F+AD +LGRY TIA F  +   G  +L +   +  L P  C   + 
Sbjct:    74 NWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-C---SG 129

Query:   129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXX 188
              TC   +G Q  + +IALYLIALGTGG+K  VS FG DQFD+ DEKEK   +        
Sbjct:   130 ETCHATAG-QTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYF 188

Query:   189 XISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
              I++G ++A +VLV+IQ  +    G G+ +VAM +A++ F AG+  YR +K  GSP+  +
Sbjct:   189 VINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSPLTRM 248

Query:   249 FQVIVAAIKKRKMDLPCNVGMLYEDTP-EAS-----RIHHTEQFHFLDKAAIVAEGDFEA 302
              QVIVA+ +K K+ +P +  +LYE+   E+S     ++ HT+   F DKAA+  E D + 
Sbjct:   249 LQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESDNKG 308

Query:   303 GSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIG-RF 361
              +  + WKLC+VT VEE+K + RLLPIWAT I+F + Y+QM T  V Q  T+++ +G  F
Sbjct:   309 AAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMGPNF 368

Query:   362 QIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAA 420
             +IP+ SL++F   ++L    VYD+LI+P  +K+ G + GFT LQR+ IGLV+SI  M +A
Sbjct:   369 KIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSMVSA 428

Query:   421 ALVERKRLSVARAVGL-TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMK 479
              ++E  RL+  +   L    T+P+++F  +PQ+FLVG  E F + GQL+FF  ++P  M+
Sbjct:   429 GILEVARLNYVQTHNLYNEETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAPDAMR 488

Query:   480 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLLAILSII 539
                                                 W+A N+N G LD F+ LLA LS +
Sbjct:   489 SLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFL 548

Query:   540 NLVIYLICAVWYKPKK 555
             N ++YL  A WY  KK
Sbjct:   549 NFLVYLWIAKWYTYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 221/556 (39%), Positives = 312/556 (56%)

Query:    13 GSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG 72
             G P  P   GG +    +   E+CE+L+ +G   N+++YL   +HLP   +AN +T+F G
Sbjct:    18 GRPNRPK--GGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAG 75

Query:    73 TSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCE 132
             TS L  LLG F+AD+F GR+ TI   + +  +G  +L +   +  LRP PCK      C 
Sbjct:    76 TSSLTPLLGAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCK--GEEVCV 133

Query:   133 QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISL 192
              A   Q+ +LY+AL L ALG+GG++  V  FG DQFDE D  + T+           +  
Sbjct:   134 VADTAQLSILYVALLLGALGSGGIRPCVVAFGADQFDESDPNQTTKTWNYFNWYYFCMGA 193

Query:   193 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVI 252
               L+AVTVLV+IQD +   +G GI +VAMF+++I F+ G + YR+   +GSP   + QV 
Sbjct:   194 AVLLAVTVLVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVG 253

Query:   253 VAAIKKRKMDLPCNVGMLY---E-DTPEA--SRIHHTEQFHFLDKAAIVAEGD-FEAGST 305
             VAA +KRK+ +  +  +LY   E D P +   ++ HT+   FLDKAAIV E D  + G  
Sbjct:   254 VAAFRKRKLRMVSDPSLLYFNDEIDAPISLGGKLTHTKHMSFLDKAAIVTEEDNLKPGQI 313

Query:   306 PNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSI-GRFQIP 364
             PN W+L +V  VEE+K V R+ PI A+ I+  T YAQ  TFS++QA TM R +   FQIP
Sbjct:   314 PNHWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHLTNSFQIP 373

Query:   365 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLVLSIVGMAAAALV 423
             AGS++VF   A+L T+  YDR+ + + +K+ G + G T L RM IG V+SI+    A  V
Sbjct:   374 AGSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFV 433

Query:   424 ERKRLSVARAVGLTT---ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKX 480
             E KR SVA   GL       +P+S   LIPQ+ L G  EAF+  G L+FF  ++P+ M+ 
Sbjct:   434 EVKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRS 493

Query:   481 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADN-INRGRLDLFYGLLAILSII 539
                                                WL DN +NRGRL+ FY L+ +L  +
Sbjct:   494 TATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAV 553

Query:   540 NLVIYLICA-VW-YKP 553
             NLV YL CA ++ YKP
Sbjct:   554 NLVYYLWCAKIYTYKP 569

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2033776 NRT1.5 "nitrate transporter 1.5" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 202/560 (36%), Positives = 311/560 (55%)

Query:     9 VDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT 68
             VDY G P+  S +G WV   ++L  +    L+  G+ VNLV +L   +   +A +AN V+
Sbjct:    26 VDYYGRPSIRSNSGQWVAGIVILLNQGLATLAFFGVGVNLVLFLTRVLQQNNADAANNVS 85

Query:    69 DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT 128
              + GT ++  L+G FL+D++ GRYKT AIF  +  +G   L++ + +  +RPR C +  T
Sbjct:    86 KWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQVIFVIGLSSLSLSSYMFLIRPRGCGDEVT 145

Query:   129 HTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXX 188
               C   S  ++ + Y ++YLIALG GG + +++  G DQFDE+  KE             
Sbjct:   146 -PCGSHSMMEITMFYFSIYLIALGYGGYQPNIATLGADQFDEEHPKEGYSKIAFFSYFYL 204

Query:   189 XISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHI 248
              ++LG+L + T+L Y +DE   ++G+   + +  + +I+FL GT RYRY K +G+P+   
Sbjct:   205 ALNLGSLFSNTILGYFEDEGMWALGFWASTGSAIIGLILFLVGTPRYRYFKPTGNPLSRF 264

Query:   249 FQVIVAAIKKRKMDLPCNVGM--LYEDTPE---AS-----RIHHTEQFHFLDKAAIVAEG 298
              QV+VAA KK  ++ P   G   +Y+   E   AS     RI HT++F FLDKAA +   
Sbjct:   265 CQVLVAATKKSSVEAPLR-GREEMYDGDSEGKNASVNTGRRIVHTDEFKFLDKAAYITAR 323

Query:   299 DFE--AGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMER 356
             D +     + NPW+LC VT VEEVK + RL+PIW  TII+   + QM +  VEQ   M  
Sbjct:   324 DLDDKKQDSVNPWRLCPVTQVEEVKCILRLMPIWLCTIIYSVVFTQMASLFVEQGAAMNT 383

Query:   357 SIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWK--GKPGFTNLQRMAIGLVLSI 414
             S+  F+IP  S++ F + ++ + + +Y R++ P+  ++K  G  G T L RM IGLV+++
Sbjct:   384 SVSDFKIPPASMSSFDILSVALFIFLYRRVLEPVANRFKKNGSKGITELHRMGIGLVIAV 443

Query:   415 VGMAAAALVERKRLSVA-RAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK 473
             + M AA +VE  RL  A ++      +  +S+F   PQ+ L+GA E F+Y GQL+FF  +
Sbjct:   444 IAMIAAGIVECYRLKYADKSCTHCDGSSSLSIFWQAPQYSLIGASEVFMYVGQLEFFNAQ 503

Query:   474 SPKGMKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADNINRGRLDLFYGLL 533
             +P G+K                                    W+  N+N+G LD FY LL
Sbjct:   504 TPDGLKSFGSALCMMSMSMGNFVSSLLVTMVVKISTEDHMPGWIPRNLNKGHLDRFYFLL 563

Query:   534 AILSIINLVIYLICAVWYKP 553
             A L+ I+LV+Y+ CA WYKP
Sbjct:   564 AALTSIDLVVYIACAKWYKP 583

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010167 "response to nitrate" evidence=IEP;RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0015706 "nitrate transport" evidence=RCA;IMP

GO:0042128 "nitrate assimilation" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009734 "auxin mediated signaling pathway" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0015698 "inorganic anion transport" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

TAIR|locus:2025886 AT1G59740 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 201/561 (35%), Positives = 312/561 (55%)

Query:     2 SWAVAD--AVDYKGSPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLP 59
             +W +A+  +VD++G P++P+K GG   A  VLG++  E +    +  NL+TY++  MH P
Sbjct:    21 NWELAEEESVDWRGRPSNPNKHGGMRAALFVLGLQAFEIMGIAAVGNNLITYVINEMHFP 80

Query:    60 SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR 119
              + +ANIVT+F+GT F+  LLGG+L+D FLG + TI IF  V+  G  +L++   L QL+
Sbjct:    81 LSKAANIVTNFVGTIFIFALLGGYLSDAFLGSFWTIIIFGFVELSGFILLSVQAHLPQLK 140

Query:   120 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM 179
             P  C      TCE+A GF+  + ++ALYL+ALG+G +K ++   G DQF +   K+  ++
Sbjct:   141 PPKCNPLIDQTCEEAKGFKAMIFFMALYLVALGSGCVKPNMIAHGADQFSQSHPKQSKRL 200

Query:   180 AYXXXXXXXXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK 239
             +          S+G L+A+T+LV++Q      +G+G+ + AM M II  ++GT  +R K+
Sbjct:   201 SSYFNAAYFAFSMGELIALTLLVWVQTHSGMDIGFGVSAAAMTMGIISLVSGTMYFRNKR 260

Query:   240 SSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY------EDTPEASRIHHTEQFHFLDKAA 293
                S    I  VIVAAI KRK+  P +  ML+       D   +S + HT +F FLDKA 
Sbjct:   261 PRRSIFTPIAHVIVAAILKRKLASPSDPRMLHGDHHVANDVVPSSTLPHTPRFRFLDKAC 320

Query:   294 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT 353
             I  +   +  +  +PW+LC+VT VE+VK +  L+PI+A+TI+F T  AQ+ TFSV+Q ++
Sbjct:   321 IKIQ---DTNTKESPWRLCTVTQVEQVKTLISLVPIFASTIVFNTILAQLQTFSVQQGSS 377

Query:   354 MERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKG-KPGFTNLQRMAIGLV 411
             M   +   F IP  SL       ++  + +YD  ++P  +K  G   G   L R+ IGL 
Sbjct:   378 MNTRLSNSFHIPPASLQAIPYIMLIFLVPLYDSFLVPFARKLTGHNSGIPPLTRIGIGLF 437

Query:   412 LSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFI 471
             LS   M +AA++E+KR    R   +    + +S+F + PQF + G  E F   G ++FF 
Sbjct:   438 LSTFSMVSAAMLEKKR----RDSSVLDGRI-LSIFWITPQFLIFGISEMFTAVGLIEFFY 492

Query:   472 TKSPKGMKXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXWLADN-INRGRLDLF 529
              +S KGM+                                     WL +N +N+ RLDLF
Sbjct:   493 KQSAKGMESFLMALTYCSYSFGFYFSSVLVSVVNKITSTSVDSKGWLGENDLNKDRLDLF 552

Query:   530 YGLLAILSIINLVIYLICAVW 550
             Y LLA+LS++N + YL  + W
Sbjct:   553 YWLLAVLSLLNFLSYLFWSRW 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP;RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZY4	PTR27_ARATH	No assigned EC number	0.7430	0.9860	0.9826	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016880001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (576 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	575
pfam00854	372	pfam00854, PTR2, POT family	2e-79
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	1e-34
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	5e-28
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	9e-18
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-08
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	7e-08
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	6e-07

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  254 bits (651), Expect = 2e-79
 Identities = 130/404 (32%), Positives = 196/404 (48%), Gaps = 39/404 (9%)

Query: 92  YKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIAL 151
           +KTI + + +  +G  +L +                       S  Q+ + YI LYLIAL
Sbjct: 1   FKTILLGSIIYAIGHVLLTL----------------GAIPPSLSPVQVALFYIGLYLIAL 44

Query: 152 GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRS 211
           GTGG+K +VS FG DQFDE  +    +   FFS F+F I+ G+L+A  +  Y+Q  +   
Sbjct: 45  GTGGIKPNVSAFGADQFDETQDP---RRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101

Query: 212 VGYGICSVAMFMAIIIFLAGTKRYRYKKSSGS--PIVHIFQVIVAAIKKRKMDLPCNVGM 269
           +G+G+ +V M +A+++FL G++RY+ K   G     V I  +I AA K RK+ LP +   
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHW 161

Query: 270 LYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKL-CSVTSVEEVKMVARLLP 328
           LY    + ++   ++       A I              W L     SV  ++ +  +LP
Sbjct: 162 LYWALEKYNKRSISQTKVHTRVAVIFIPLPKF-------WALFDQQGSVWLLQAILLMLP 214

Query: 329 IWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLI 387
           IWA  I+    + Q+ T  V Q  TM+R I   F+IP  S   F   A+LI L + D L+
Sbjct: 215 IWAFWILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLV 274

Query: 388 MPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLT--TATLPVSV 445
            PL    + K G T  QR  +G+ + IV    AA+VE KR   A A+GLT    T+P+ +
Sbjct: 275 YPL---LRLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFI 331

Query: 446 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT 489
              +P+ F+ G G A    G L+F     P  M ++ T L    
Sbjct: 332 LWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  137 bits (346), Expect = 1e-34
 Identities = 101/485 (20%), Positives = 183/485 (37%), Gaps = 59/485 (12%)

Query: 26  PAALVLGIELCERLSTMGIAVNLVTYLV----GTMHLPSATSANIVTDFMGTSFLLCLLG 81
              L+  +EL ER S  G+   L+ YL       +      +  + + +    +L  ++G
Sbjct: 22  GLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIG 81

Query: 82  GFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGV 141
           G+LAD  LG  +TI + A +  +G  +LA+                      +S    G 
Sbjct: 82  GWLADRVLGTRRTIVLGAILMAIGHLVLAI----------------------SSVSGPGG 119

Query: 142 LYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL 201
           LYI L LI +GTG  K ++S    + + + D     +    F+ F+  I++G+L+A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKDD----PRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 202 VYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM 261
             +       VG+G+ +V M + ++IFL G +     K  G            +      
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHV---KGIGGVPDPNPL----SFNFLLP 228

Query: 262 DLPCNVGMLYEDTPEASRIHHTEQFHF-LDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEV 320
            L   V M+       + + +   F   L   +I+    + A               +E 
Sbjct: 229 VLGGLVVMILAAL--LTLLLNQNTFSGVLLVISILIAIIYFA--EAFRSPKVF----DER 280

Query: 321 KMVARLLPIWATTIIFWTTYAQMITFSVEQATTME-RSIGRFQIPAGSLTVFFVSAILIT 379
           + +   +P++   +IFW  Y QM +     A     R I  F++P           I++ 
Sbjct: 281 RRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILF 340

Query: 380 LAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTA 439
             +   L   L +  K         + A+GL+L+ +G     L            GL   
Sbjct: 341 SPILAALWTKLGRGNKQPSTPI---KFALGLILAGLGFLILLLAGIWF---GGPSGL--- 391

Query: 440 TLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSF 499
              VSV+ L+  + L   GE FI    L      +P  +K+    ++  T++ G  +   
Sbjct: 392 ---VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQ 448

Query: 500 LVAVV 504
           +  + 
Sbjct: 449 VAGLT 453

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score =  118 bits (297), Expect = 5e-28
 Identities = 103/386 (26%), Positives = 175/386 (45%), Gaps = 60/386 (15%)

Query: 48  LVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG 107
           LV YL+  +     T+ NI   F    +L  L+G  +AD++LG++KTI   + V  +G  
Sbjct: 10  LVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYVVGH- 68

Query: 108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQ 167
            LA +  +  L          H    A         + L LIALGTGG+K  VS FG DQ
Sbjct: 69  ALASLGAVPSL---------GHPLHDALSL------VGLALIALGTGGIKPCVSAFGGDQ 113

Query: 168 FDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV-------LVYIQDEISRSVGYGICSVA 220
           F+E+    + +   FFS F+F I+ G+L +  +       +     +    + +G+  + 
Sbjct: 114 FEERQLSLRFR---FFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFGVPGIL 170

Query: 221 MFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRI 280
           M +A+I+F  G+K Y+ K   G+ +  + + IV A+KKR                  +R 
Sbjct: 171 MTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR----------------FRTRS 214

Query: 281 HHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY 340
               + H+LD AA                       +   K + R+L ++    +FW  +
Sbjct: 215 EDWPRLHWLDWAAPKYLIRM----------------IRSTKRLLRVLFLFIPLPMFWALF 258

Query: 341 AQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGF 400
            Q  +    QAT M+  +G F I    +       +LI + ++D ++ P   K   +  F
Sbjct: 259 DQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR--F 316

Query: 401 TNLQRMAIGLVLSIVGMAAAALVERK 426
           T+L++MA+G++L+ +  A AAL++ K
Sbjct: 317 TSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 86.0 bits (213), Expect = 9e-18
 Identities = 93/484 (19%), Positives = 176/484 (36%), Gaps = 67/484 (13%)

Query: 26  PAALVLGIELCERLSTMGIAVNLVTYLV--GTMHLPSATSANIVTDFMGTSFLLCLLGGF 83
           P   +  +EL ER S  G+   L  YLV    +      +  I   +    +LL  +G +
Sbjct: 11  PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWW 70

Query: 84  LADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLY 143
             D   G  KT+ +   V  LG  MLAM                             +++
Sbjct: 71  FGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYP------------------------DLIF 106

Query: 144 IALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY 203
             L  IA+G+G  K++ S     +  E+ +  +      F+ F+  I++G+ ++  +   
Sbjct: 107 YGLGTIAVGSGLFKANPSSM-VGKLYERGDMPRRDGG--FTLFYMSINIGSFISPLLAGV 163

Query: 204 IQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQ----VIVAAIKKR 259
           I +     VG+ + +V M + ++ F AG    R   S   P+    +    +++A +   
Sbjct: 164 IAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAAL 223

Query: 260 KMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEE 319
            +   C   M           HH    + L     +A   F       P     + +V  
Sbjct: 224 ALVFFCAWLM-----------HHVVIANILLMTVTLAVIIFFFRLAFKP----RLDAVAR 268

Query: 320 VKMVARLLPIWATTIIFWTTYAQMIT-FSVEQATTMERSIGRFQIPAGSLTVFFVSAILI 378
            KM A  + ++   ++FW  YAQM T  +      M   +    +P       F S    
Sbjct: 269 NKMYA-YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIW----FQSLNPF 323

Query: 379 TLAVYDRLIMPLWKKW--KGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL 436
            + V   ++  +W +   KGK   T L +  +G++                L+ A ++  
Sbjct: 324 WVVVGSPVLAMIWTRLGRKGKDPTTPL-KFTLGMLFCGASF----------LTFAASIWF 372

Query: 437 TTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV 496
             A    S + ++  +     GE  I    L ++   +P+ +     G++    ++G  +
Sbjct: 373 ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432

Query: 497 SSFL 500
             +L
Sbjct: 433 GGYL 436

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 27/218 (12%)

Query: 30  VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL 89
           V+ +++ E  S  G+   L+ YL   +      +  + + +    ++  +LGGFLAD  L
Sbjct: 14  VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVL 73

Query: 90  GRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLI 149
           G    + + A +  +G                       H    AS      LY++L +I
Sbjct: 74  GNRMAVMLGALLMAIG-----------------------HVVLGASEIHPSFLYLSLAII 110

Query: 150 ALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS 209
             G G  KS+VS    + ++  D +        FS  +   ++G+++A     Y Q+E S
Sbjct: 111 VCGYGLFKSNVSCLLGELYEPTDPRRDGG----FSLMYAAGNVGSIIAPIACGYAQEEYS 166

Query: 210 RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVH 247
            ++G+G+ +V M   ++IFL G + + + +     ++ 
Sbjct: 167 WAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLR 204

Length = 493

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 44/201 (21%), Positives = 88/201 (43%), Gaps = 27/201 (13%)

Query: 29  LVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 88
           L+  IEL ER    G+   +  YLV  + +  A S  + + F    + L  +GG+L D  
Sbjct: 25  LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKV 84

Query: 89  LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 148
           LG  + I + A V  +G  ++A                        SG   G++Y+ +  
Sbjct: 85  LGTKRVIMLGAIVLAIGYALVA-----------------------WSGHDAGIVYMGMAT 121

Query: 149 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI 208
           IA+G G  K++ S   +  +++ D     ++   F+ ++  I++G+  ++    ++  + 
Sbjct: 122 IAVGNGLFKANPSSLLSTCYEKDD----PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY 177

Query: 209 SRSVGYGICSVAMFMAIIIFL 229
             SV + +  V M + ++ F 
Sbjct: 178 GWSVAFALSVVGMLITVVNFA 198

Length = 500

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 51.7 bits (124), Expect = 6e-07
 Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 27/205 (13%)

Query: 26  PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLA 85
           P  ++  +EL ER    G+   L  + V  +      +      F    + L  +GG++ 
Sbjct: 15  PFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVG 74

Query: 86  DTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIA 145
           D  LG  +TI + A V  +G  M  M                       S  +  +++IA
Sbjct: 75  DHLLGTKRTIVLGAIVLAIGYFMTGM-----------------------SLLKPDLIFIA 111

Query: 146 LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ 205
           L  IA+G G  K++ +   +  +  KD +    +   F+ F+  I++G+L+++++   I 
Sbjct: 112 LGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIA 167

Query: 206 DEISRSVGYGICSVAMFMAIIIFLA 230
           D+   SV Y +C   + +A++++ A
Sbjct: 168 DKFGYSVTYNLCGAGLIIALLVYFA 192

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	575
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.94
PRK03545	390	putative arabinose transporter; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
PRK12382	392	putative transporter; Provisional	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.92
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.92
PRK09874	408	drug efflux system protein MdtG; Provisional	99.92
PRK11663	434	regulatory protein UhpC; Provisional	99.92
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.91
PRK12307	426	putative sialic acid transporter; Provisional	99.91
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.91
TIGR00891	405	2A0112 putative sialic acid transporter.	99.91
PRK09705	393	cynX putative cyanate transporter; Provisional	99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.91
PRK09952	438	shikimate transporter; Provisional	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.9
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.9
PRK10091	382	MFS transport protein AraJ; Provisional	99.9
PLN00028	476	nitrate transmembrane transporter; Provisional	99.9
PRK03699	394	putative transporter; Provisional	99.9
TIGR00895	398	2A0115 benzoate transport.	99.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.9
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.9
PRK10642	490	proline/glycine betaine transporter; Provisional	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.9
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.9
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.89
PRK09528	420	lacY galactoside permease; Reviewed	99.89
PRK03633	381	putative MFS family transporter protein; Provision	99.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.89
PRK03893	496	putative sialic acid transporter; Provisional	99.89
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK15075	434	citrate-proton symporter; Provisional	99.88
TIGR00898	505	2A0119 cation transport protein.	99.88
PRK11043	401	putative transporter; Provisional	99.88
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
KOG2532	466	consensus Permease of the major facilitator superf	99.88
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.87
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.86
PRK10133	438	L-fucose transporter; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.85
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
PRK11010	491	ampG muropeptide transporter; Validated	99.85
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.84
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.83
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.83
KOG0569	485	consensus Permease of the major facilitator superf	99.82
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
PRK11902	402	ampG muropeptide transporter; Reviewed	99.81
KOG0254	513	consensus Predicted transporter (major facilitator	99.8
TIGR00901	356	2A0125 AmpG-related permease.	99.8
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.79
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.78
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.76
PRK10429	473	melibiose:sodium symporter; Provisional	99.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
KOG2615	451	consensus Permease of the major facilitator superf	99.75
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.74
PRK09669	444	putative symporter YagG; Provisional	99.73
PRK09848	448	glucuronide transporter; Provisional	99.73
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.73
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
PF13347	428	MFS_2: MFS/sugar transport protein	99.72
TIGR00805	633	oat sodium-independent organic anion transporter.	99.71
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.71
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.71
PTZ00207	591	hypothetical protein; Provisional	99.69
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.68
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.67
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.65
KOG2533	495	consensus Permease of the major facilitator superf	99.64
PRK11462	460	putative transporter; Provisional	99.64
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.63
COG2211	467	MelB Na+/melibiose symporter and related transport	99.54
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.54
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.53
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.51
PRK10642	490	proline/glycine betaine transporter; Provisional	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.44
PRK15011	393	sugar efflux transporter B; Provisional	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.38
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.38
PRK09952	438	shikimate transporter; Provisional	99.37
PRK03699	394	putative transporter; Provisional	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.36
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.35
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.35
PRK09705	393	cynX putative cyanate transporter; Provisional	99.34
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.34
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.33
PRK03545	390	putative arabinose transporter; Provisional	99.32
KOG2563	480	consensus Permease of the major facilitator superf	99.31
PRK09874	408	drug efflux system protein MdtG; Provisional	99.3
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.29
PRK12382	392	putative transporter; Provisional	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.29
TIGR00893	399	2A0114 d-galactonate transporter.	99.29
PRK03893	496	putative sialic acid transporter; Provisional	99.28
PRK03633	381	putative MFS family transporter protein; Provision	99.28
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.28
PRK10489	417	enterobactin exporter EntS; Provisional	99.28
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.28
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.27
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.27
PRK11663	434	regulatory protein UhpC; Provisional	99.26
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.23
PRK11010	491	ampG muropeptide transporter; Validated	99.23
TIGR00891	405	2A0112 putative sialic acid transporter.	99.22
PRK15075	434	citrate-proton symporter; Provisional	99.21
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.2
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.19
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.17
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.15
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.15
PRK10504	471	putative transporter; Provisional	99.14
KOG3626	735	consensus Organic anion transporter [Secondary met	99.13
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.12
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.12
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.1
PRK12307	426	putative sialic acid transporter; Provisional	99.09
PLN00028	476	nitrate transmembrane transporter; Provisional	99.09
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.09
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.07
PRK10091	382	MFS transport protein AraJ; Provisional	99.06
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.05
TIGR00900	365	2A0121 H+ Antiporter protein.	99.04
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.04
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.03
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.03
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.01
PRK10054	395	putative transporter; Provisional	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.99
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.99
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.98
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.97
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.95
TIGR00895	398	2A0115 benzoate transport.	98.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.93
PRK10133	438	L-fucose transporter; Provisional	98.92
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.89
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.87
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.87
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.83
KOG3762	618	consensus Predicted transporter [General function	98.82
PRK09848	448	glucuronide transporter; Provisional	98.81
TIGR00901	356	2A0125 AmpG-related permease.	98.8
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.79
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.79
PRK11043	401	putative transporter; Provisional	98.77
TIGR00898	505	2A0119 cation transport protein.	98.76
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.72
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.72
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.69
KOG2532	466	consensus Permease of the major facilitator superf	98.67
KOG0569	485	consensus Permease of the major facilitator superf	98.63
PRK10429	473	melibiose:sodium symporter; Provisional	98.63
PRK09669	444	putative symporter YagG; Provisional	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.59
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.58
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.49
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.44
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.41
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.41
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.38
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.37
COG2211	467	MelB Na+/melibiose symporter and related transport	98.37
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.35
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.33
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.26
PRK11462	460	putative transporter; Provisional	98.23
COG0477	338	ProP Permeases of the major facilitator superfamil	98.22
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.21
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.2
TIGR00805	633	oat sodium-independent organic anion transporter.	98.18
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.14
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.13
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.09
KOG2533	495	consensus Permease of the major facilitator superf	98.09
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.07
PF12832	77	MFS_1_like: MFS_1 like family	98.04
KOG3762	618	consensus Predicted transporter [General function	98.01
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.97
KOG0637	498	consensus Sucrose transporter and related proteins	97.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.92
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.89
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.8
KOG0254	513	consensus Predicted transporter (major facilitator	97.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.56
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.51
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.5
PTZ00207	591	hypothetical protein; Provisional	97.35
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.26
KOG2563	480	consensus Permease of the major facilitator superf	97.24
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.11
KOG2615	451	consensus Permease of the major facilitator superf	97.02
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.87
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.83
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.74
PRK03612	521	spermidine synthase; Provisional	96.44
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.41
KOG3626	735	consensus Organic anion transporter [Secondary met	96.27
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.37
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.35
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.93
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	94.59
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.42
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	94.15
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	94.02
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.59
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.54
KOG0637	498	consensus Sucrose transporter and related proteins	93.34
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	92.48
KOG3098	461	consensus Uncharacterized conserved protein [Funct	92.42
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.5
COG3202	509	ATP/ADP translocase [Energy production and convers	88.7
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	87.28
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	85.42
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.64
KOG3097	390	consensus Predicted membrane protein [Function unk	84.53
KOG3880	409	consensus Predicted small molecule transporter inv	84.37
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	81.99
KOG3810	433	consensus Micronutrient transporters (folate trans	80.5

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=5.6e-48  Score=417.36  Aligned_cols=546  Identities=49%  Similarity=0.794  Sum_probs=490.0

Q ss_pred             cccccCCCCCCCC---CCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 008182            7 DAVDYKGSPADPS---KTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGF   83 (575)
Q Consensus         7 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~   83 (575)
                      +..|+..++..+.   +.+.|+....++..+.+|++++|++..++..|+++.+|.+...+...++.+...+.+.++.+++
T Consensus        16 ~~~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~   95 (571)
T KOG1237|consen   16 TSVDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAF   95 (571)
T ss_pred             ceeeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4556666666665   7888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CCcCcccccCccchhhHHHHHHHHHHHHcccccccchhc
Q 008182           84 LADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC-KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSG  162 (575)
Q Consensus        84 laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~  162 (575)
                      ++|.++||.+++.++.++..+|.+++.+++..|.+.+++| ...+...|+.++..+...++.++.+.++|.|+.+|+..+
T Consensus        96 laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~  175 (571)
T KOG1237|consen   96 LADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLA  175 (571)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchh
Confidence            9999999999999999999999999999999999998886 445556899999999999999999999999999999999


Q ss_pred             cccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCC
Q 008182          163 FGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG  242 (575)
Q Consensus       163 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (575)
                      +.+|++++..+++++.+.+.|.|++...++|..++..+..++++..+|.+.|.++.+...+++++++...+.++++++.+
T Consensus       176 fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g  255 (571)
T KOG1237|consen  176 FGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG  255 (571)
T ss_pred             hcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC
Confidence            99999997777667678899999999999999999999999999999999999999999999999999999999988999


Q ss_pred             CchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHH
Q 008182          243 SPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKM  322 (575)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (575)
                      +|...+.+++.++.+++....+.+++.+....+.....++.+...++|++.++.+.+...+....||+.|..+++++.|.
T Consensus       256 sp~t~i~~Vlvaa~~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~  335 (571)
T KOG1237|consen  256 SPKTRIGQVLVAAAFKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKA  335 (571)
T ss_pred             CchhHHHHHHHHHHHHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhh
Confidence            99999999999999998888776644441111122344556778899999888766544445678899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccchhhhhhccccccccc-ccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCC-CC
Q 008182          323 VARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP-GF  400 (575)
Q Consensus       323 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~-~~  400 (575)
                      +++.++.+....++++.+.|+.+.+..|...++++.++ +.+|++.+..+..+..++..|+.+++..|+.||..+++ ..
T Consensus       336 ~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~  415 (571)
T KOG1237|consen  336 VLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGI  415 (571)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCC
Confidence            99999999999999999999999999999999999987 99999999999999999999999999999999988865 78


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhH
Q 008182          401 TNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT  480 (575)
Q Consensus       401 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  480 (575)
                      +.+.++.+|.++..+++...+..+.+|.+....  ....+.++|..|++++|+++|++|.+...+.+++.++++|++||+
T Consensus       416 t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~--~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS  493 (571)
T KOG1237|consen  416 TPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS--LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKS  493 (571)
T ss_pred             ChhheeeccchHHHHHHHHHHHHHHHHhhhhhh--ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHH
Confidence            999999999999999999999999998887653  112345899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc-CCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 008182          481 MSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLA-DNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKP  556 (575)
Q Consensus       481 ~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~  556 (575)
                      .+++++.+..++|+.++.++++.+....++  ..+|++ +++|.+++.++||+++.+..++...+..+.++++.++.
T Consensus       494 ~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~  568 (571)
T KOG1237|consen  494 VATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDD  568 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccc
Confidence            999999999999999999999988766543  468999 99999999999999999999999999998888765543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-42  Score=352.75  Aligned_cols=466  Identities=21%  Similarity=0.302  Sum_probs=364.1

Q ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC----CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 008182           15 PADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMH----LPSATSANIVTDFMGTSFLLCLLGGFLADTFLG   90 (575)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G   90 (575)
                      +..+...+|||.++.++.+|++|||+|||+...+..|++.+++    ++.+++..+.+.|....++.++++||++||++|
T Consensus        11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG   90 (498)
T COG3104          11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG   90 (498)
T ss_pred             ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3455566799999999999999999999999999999999988    999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCC
Q 008182           91 RYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE  170 (575)
Q Consensus        91 r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~  170 (575)
                      +||++..+.+++++|.++++.+.   .                   .....++++.+++++|+|..+|++.++++|++|+
T Consensus        91 ~~~tI~lGail~~iGh~~L~~~~---~-------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~  148 (498)
T COG3104          91 TRRTIVLGAILMAIGHLVLAISS---V-------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK  148 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccc---c-------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence            99999999999999999998762   0                   1255689999999999999999999999999999


Q ss_pred             CChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccC--CCCCchhH-
Q 008182          171 KDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK--SSGSPIVH-  247 (575)
Q Consensus       171 ~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-  247 (575)
                      +++|    |..+|+++|++.|+|+.++|++.+++.+.+||+..|.++++....+++.++..++.....+  +++.+... 
T Consensus       149 ~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~  224 (498)
T COG3104         149 DDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFN  224 (498)
T ss_pred             CCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhh
Confidence            9988    9999999999999999999999999999999999999999999999999988887665433  22222111 


Q ss_pred             -----HHHHHHHHHHh--ccccCCCCccccccCCcccccccCCcchhhhh-HHhhhhcCCcCCCCCCCCCccccchhhhh
Q 008182          248 -----IFQVIVAAIKK--RKMDLPCNVGMLYEDTPEASRIHHTEQFHFLD-KAAIVAEGDFEAGSTPNPWKLCSVTSVEE  319 (575)
Q Consensus       248 -----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (575)
                           ...++......  +..                   .+..+.+... ...+..+....+  ....+   .+.. .+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-------------------l~~~~~~~~~~~~~i~~~~~~~~--~~~~~---~~~~-~e  279 (498)
T COG3104         225 FLLPVLGGLVVMILAALLTLL-------------------LNQNTFSGVLLVISILIAIIYFA--EAFRS---PKVF-DE  279 (498)
T ss_pred             hhhhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH--HHhcc---CccH-HH
Confidence                 11111111110  000                   0000001100 000000000000  00111   1122 67


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccchhhhhh-cccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCC
Q 008182          320 VKMVARLLPIWATTIIFWTTYAQMITFSVEQA-TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKP  398 (575)
Q Consensus       320 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~  398 (575)
                      +|+++..+++++..++||+++.|+.+.+..+. .+.+++..|+.+|+++++++|++.+++++|+.++++.|+.++.+   
T Consensus       280 r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~---  356 (498)
T COG3104         280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNK---  356 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCC---
Confidence            88999999999999999999999999776554 45566656689999999999999999999999999999888753   


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcch
Q 008182          399 GFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGM  478 (575)
Q Consensus       399 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~  478 (575)
                      +++...++..|+++++.+++++.....+..         .+....|.+|++..++++++||.+.+|..++++++.+|+++
T Consensus       357 ~ps~~~KFalGl~l~g~~fl~l~~~~~~~~---------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~  427 (498)
T COG3104         357 QPSTPIKFALGLILAGLGFLILLLAGIWFG---------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL  427 (498)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHhhc---------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence            578889999999999999999887644321         11336899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008182          479 KTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKP  553 (575)
Q Consensus       479 rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  553 (575)
                      ++.+|+.|.+++..|+.++..+++.... .+         +..+......+|+..+...++..+......++.++
T Consensus       428 ~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r  492 (498)
T COG3104         428 KSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNR  492 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999888773210 00         01122233566888888888887777777665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.1e-37  Score=333.49  Aligned_cols=462  Identities=19%  Similarity=0.276  Sum_probs=335.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      ++|||.++.+++.+++|++++|++..+++.|+++++|++.++++++.+.+.....+..+++|+++||++||||+++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999993399999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ++.++.++++++.+                       ....++++|+++++|.|...|+..++++|++|+++++    |+
T Consensus        90 ~~~~g~~~~~~~~~-----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~  142 (489)
T PRK10207         90 VLAIGYFMTGMSLL-----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LD  142 (489)
T ss_pred             HHHHHHHHHHHhcc-----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hh
Confidence            99999999988632                       1233568899999999999999999999999987643    78


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchh--HHHHHH----
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK--KSSGSPIV--HIFQVI----  252 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~----  252 (575)
                      +++++++++.|+|..++|.+++++.+..||++.|+++.+..+++++.+...++..++.  ++++.+.+  ......    
T Consensus       143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~  222 (489)
T PRK10207        143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSV  222 (489)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHH
Confidence            8999999999999999999999999999999999998776666666666655444332  22222221  111100    


Q ss_pred             -HHHHHhccccCCCCccccccCCcccccccCCcchhhh-hHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHH
Q 008182          253 -VAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFL-DKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIW  330 (575)
Q Consensus       253 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  330 (575)
                       ..........                   ........ ....+......       -++..+.+.. ++++.+..+.++
T Consensus       223 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~i~~~~f-------~~~~~~~~~~-~r~r~~~~~~l~  275 (489)
T PRK10207        223 VMIFVCAWLMH-------------------NVEVANLVLIVLSIVVTIIF-------FREAFKLDKT-GRNKMFVAFVLM  275 (489)
T ss_pred             HHHHHHHHHHh-------------------hhhHHHHHHHHHHHHHHHHH-------HHHHhcCCHH-HHHHHHHHHHHH
Confidence             0000000000                   00000000 00000000000       0000011122 344555566677


Q ss_pred             HHHHHHHHhhhcccchhhhhhc-ccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHH
Q 008182          331 ATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIG  409 (575)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g  409 (575)
                      +...++|..+.|..+.+..+.. +.+.+..|+.++++.++++|++..+++.|+.+++..++.+|..   ++++..++.+|
T Consensus       276 ~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~---~~~~~~k~~~G  352 (489)
T PRK10207        276 LEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGK---DLSMPMKFTLG  352 (489)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCC---CCCcHHHHHHH
Confidence            8899999999998776655443 4666666788888999999999999999999988777766533   47889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHH
Q 008182          410 LVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT  489 (575)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~  489 (575)
                      +++.+++++.++......   .+      .....+.+|++..+++.++||.+.+|+.++++.+.+|++++|.++|++++.
T Consensus       353 ~~l~~~~~~~~~~~~~~~---~~------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~  423 (489)
T PRK10207        353 MFLCSLGFLTAAAAGMWF---AD------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT  423 (489)
T ss_pred             HHHHHHHHHHHHHHHHhh---cC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            999999987665332110   00      011456788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008182          490 LSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  554 (575)
Q Consensus       490 ~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  554 (575)
                      +++|+.+|..+...... ..    ....|. ..++.+..+|..+++.+++..+++++..++.++.
T Consensus       424 ~~ig~~lg~~l~~~~~~-~~----~~~~~~-~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~  482 (489)
T PRK10207        424 QAAAFLLGGYVATFTAV-PD----NITDPL-ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM  482 (489)
T ss_pred             HHHHHHHHHHHHHHhcc-cc----ccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988875421 00    011110 0122356778888888888888887777765443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=7.7e-37  Score=326.10  Aligned_cols=416  Identities=18%  Similarity=0.266  Sum_probs=315.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +|+|.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.....++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+++.++++....                       +...++++..+..+|.|...++.+++++|++|+++++    |.+
T Consensus        86 ~~lg~lll~~~~~-----------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~s  138 (493)
T PRK15462         86 MAIGHVVLGASEI-----------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDG  138 (493)
T ss_pred             HHHHHHHHHHhhc-----------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccc
Confidence            9999877654311                       1223455566677888888899999999999987544    999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCC-CCCch--hHHHHHH-----H
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKS-SGSPI--VHIFQVI-----V  253 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~-----~  253 (575)
                      +++++|+..|+|+.++|.+.+++.+..||++.|.++++..+++++.++..++++.+... ++++.  .+.....     .
T Consensus       139 gf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (493)
T PRK15462        139 GFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV  218 (493)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887777777776665554432211 11111  1110000     0


Q ss_pred             HH-----HHhccccCCCCccccccCCcccccccCCcchhhhhH-HhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHH
Q 008182          254 AA-----IKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDK-AAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL  327 (575)
Q Consensus       254 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  327 (575)
                      ..     +....                   ... +....+-. ..+......      ..... +..+.+++|++...+
T Consensus       219 ~~~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~er~r~~~~~  271 (493)
T PRK15462        219 LLVATPALITVL-------------------FWK-EWSVYALIVATIIGLGVL------AKIYR-KAENQKQRKELGLIV  271 (493)
T ss_pred             HHHHHHHHHHHH-------------------HHH-HHHHHHHHHHHHHHHHHH------HHHHH-hcCCHHHHhhHHHHH
Confidence            00     00000                   000 00000000 000000000      00000 112235688888999


Q ss_pred             HHHHHHHHHHHhhhcccchhhh-hhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHH
Q 008182          328 PIWATTIIFWTTYAQMITFSVE-QATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM  406 (575)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~  406 (575)
                      .+++...+||+.+.|.++.+.. ..+++|+++.|+.+|+++++++|++.+++++|++.+++.++.+|.+   +++...|+
T Consensus       272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~---~~s~~~Kf  348 (493)
T PRK15462        272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNR---TVRIWGKF  348 (493)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHH
Confidence            9999999999999999986543 3468899999999999999999999999999999999877755422   47888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHH
Q 008182          407 AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF  486 (575)
Q Consensus       407 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  486 (575)
                      .+|+++.+++++++.+.....    +.+      ...+.+|++..++++++||.+..|...+++++.+|++.||++||+|
T Consensus       349 a~g~~~~g~~f~~l~~~~~~~----~~~------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w  418 (493)
T PRK15462        349 ALGLGLMSAGFCILTLSARWS----AMY------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIY  418 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc----CCC------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence            999999999999887654321    111      1578899999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHhh
Q 008182          487 LTTL-SLGFFVSSFLVAVV  504 (575)
Q Consensus       487 ~~~~-~lg~~lg~~l~~~v  504 (575)
                      .+.. .+|+.+++.+.+..
T Consensus       419 ~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        419 MLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8854 78888888887754

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=1.4e-36  Score=328.19  Aligned_cols=454  Identities=19%  Similarity=0.267  Sum_probs=335.4

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhc--CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 008182           19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA   96 (575)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~   96 (575)
                      .+.+++|.++.+++.+++|++++|++.++++.|++++  +|++..+++++.+.+..++.++++++|+++||++||||+++
T Consensus         4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924         4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            3457899999999999999999999999999999987  99999999999999999999999999999999339999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCC-hHh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD-EKE  175 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~  175 (575)
                      ++.++.+++.++++++.+                        ...+++++++.|+|.|...|+..++++|++++++ ++ 
T Consensus        84 ~~~~~~~~g~~~~~~~~~------------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~-  138 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIY------------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR-  138 (475)
T ss_pred             HHHHHHHHHHHHHHhccc------------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc-
Confidence            999999999988887622                        5567789999999999999999999999998764 22 


Q ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhH----H-HH
Q 008182          176 KTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVH----I-FQ  250 (575)
Q Consensus       176 ~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~  250 (575)
                         |++++++++++.|+|..+||.+++++.+..||++.|+++++..+++++.+...++..++.++++++.++    . .+
T Consensus       139 ---r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (475)
T TIGR00924       139 ---RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKL  215 (475)
T ss_pred             ---ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHH
Confidence               888999999999999999999999999989999999998877776666666655544333222211110    0 00


Q ss_pred             --H----HHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHH
Q 008182          251 --V----IVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVA  324 (575)
Q Consensus       251 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (575)
                        .    +....+.... .....       .. +.+     ..-...........    ....|    +.++. ++++..
T Consensus       216 ~~~~~~~~~~~~~~~~~-~~~~~-------~~-~~~-----~~~~~~~~~~~~~~----~~~~~----~~~~~-~~~~~~  272 (475)
T TIGR00924       216 LLALLAALALVFFCAWL-MHHVV-------IA-NIL-----LMTVTLAVIIFFFR----LAFKP----RLDAV-ARNKMY  272 (475)
T ss_pred             HHHHHHHHHHHHHHHHH-HhccH-------HH-HHH-----HHHHHHHHHHHHHH----HHHhc----cCCHH-HHhHHH
Confidence              0    0000000000 00000       00 000     00000000000000    00000    11122 233445


Q ss_pred             HHHHHHHHHHHHHHhhhcccchhh-hhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCch
Q 008182          325 RLLPIWATTIIFWTTYAQMITFSV-EQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNL  403 (575)
Q Consensus       325 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~  403 (575)
                      ..+.+++...++|+.+.|+.+.+. ++..+++.++.++.++++++.++|++.+++++|+.++++.++.||..   +++..
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~---~~~~~  349 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGK---DPTTP  349 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCC---CCCcH
Confidence            577888999999999999888654 44456777777889999999999999999999999987766666522   36777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHH
Q 008182          404 QRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMST  483 (575)
Q Consensus       404 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~  483 (575)
                      .++.+|.++.+++++.+++....    .+      ++.+.+++|+++.+++.++||.+..|..++++++.+|+++||+++
T Consensus       350 ~k~~~G~~l~~~~~~~~~~~~~~----~~------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~  419 (475)
T TIGR00924       350 LKFTLGMLFCGASFLTFAASIWF----AD------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQML  419 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh----cC------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence            78999999999999988765221    11      112578899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008182          484 GLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  552 (575)
Q Consensus       484 g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~  552 (575)
                      |++.+...+|+.+++.+......                ..+...+|...+...++..+++++..++.+
T Consensus       420 g~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (475)
T TIGR00924       420 GMWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWLN  472 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998875431                111245677777777777777777666543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=7.6e-35  Score=316.39  Aligned_cols=461  Identities=19%  Similarity=0.270  Sum_probs=330.0

Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 008182           17 DPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA   96 (575)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~   96 (575)
                      +.+..+++|.++.+++.++++++++|++..+++.|+++++|++.++++++.+.+........+++|+++||++|||++++
T Consensus        13 ~~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         13 SLNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             ChhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            34445678889999999999999999999999999999999999999999988887777778899999999449999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      ++.++++++..+++++++                       +...++++++++++|.|...++..++++|++|+++++  
T Consensus        93 ~g~~~~~ig~~l~~~~~~-----------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~--  147 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGH-----------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR--  147 (500)
T ss_pred             HHHHHHHHHHHHHHHhcc-----------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh--
Confidence            999999999888877521                       2445678899999999999999999999999876643  


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccccc--CCCCCchh--HHH---
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK--KSSGSPIV--HIF---  249 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~---  249 (575)
                        |..++++++++.++|..++|.+++++.+..||++.|+++++..+++++.+++.++..+++  ++++++.+  ...   
T Consensus       148 --~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (500)
T PRK09584        148 --LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTI  225 (500)
T ss_pred             --hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHH
Confidence              667899999999999999999999999999999999998876666665554444333222  12211211  111   


Q ss_pred             -HHHHH-HHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHH
Q 008182          250 -QVIVA-AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL  327 (575)
Q Consensus       250 -~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  327 (575)
                       ..... .........++..          .     ...............          ...++.++ .++++.+..+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~  279 (500)
T PRK09584        226 VGVVALIAIATWLLHNQEIA----------R-----MALGVVALGIVVIFG----------KEAFAMKG-AARRKMIVAF  279 (500)
T ss_pred             HHHHHHHHHHHHHHhcchHH----------H-----HHHHHHHHHHHHHHH----------HHHhhcCH-HHHHHHHHHH
Confidence             11111 1111000000000          0     000000000000000          00001122 3455555666


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhhc-ccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHH
Q 008182          328 PIWATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM  406 (575)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~  406 (575)
                      ..++..+++|+.+.|.++.+..+.. +.+++..|+.+++++++++|++.+++++|+.+++..++.+|      .+..+++
T Consensus       280 ~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r------~~~~~~~  353 (500)
T PRK09584        280 ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR------LPMPHKF  353 (500)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC------CCcHHHH
Confidence            7788899999999999988776543 45666677888999999999999999999998876554433      4677889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHH
Q 008182          407 AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF  486 (575)
Q Consensus       407 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  486 (575)
                      .+|.++.+++++.+.....+    .+.      ....+.+|+++.++++++||.+..|...+++.+.+|+++||+++|++
T Consensus       354 ~~G~~l~~l~f~~l~~~~~~----~~~------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~  423 (500)
T PRK09584        354 AIGMVLCSGAFLVLPLGAKF----AND------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSW  423 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHh----cCC------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHH
Confidence            99999999999998776432    111      12567779999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCC-CcccchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008182          487 LTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADN-INRGRLDLFYGLLAILSIINLVIYLICAVWYKP  553 (575)
Q Consensus       487 ~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~-~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  553 (575)
                      .+...+|+.+++.+.+....   +.    -..+. ...+++..+|...++++++..++.+...++.++
T Consensus       424 ~l~~a~g~~~~g~~~~~~~~---~~----~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k  484 (500)
T PRK09584        424 FLTTAGAALIAGYVANLMAV---PD----NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNR  484 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhcc---cc----ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888764320   00    00000 111235677777887777766666666665544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.95  E-value=2.5e-26  Score=253.39  Aligned_cols=339  Identities=29%  Similarity=0.492  Sum_probs=277.8

Q ss_pred             HHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008182           39 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  118 (575)
Q Consensus        39 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (575)
                      ++||++...+..|+++.+|++.+++..+...+.....+.++++|+++|+++||++++.++.+++.+|.+++++++..+. 
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~-   79 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS-   79 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999998887532111 


Q ss_pred             CCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHH
Q 008182          119 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  198 (575)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  198 (575)
                                     .+..+....+++..+.++|.|+.+|+..++.+|+++++++   ++|.++|.++|+++|+|+.+++
T Consensus        80 ---------------~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~  141 (654)
T TIGR00926        80 ---------------GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLIST  141 (654)
T ss_pred             ---------------ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHH
Confidence                           0012244577889999999999999999999999986542   2389999999999999999999


Q ss_pred             HHHhhhcccc-------cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccc
Q 008182          199 TVLVYIQDEI-------SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLY  271 (575)
Q Consensus       199 ~i~~~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (575)
                      ++.+++.+..       +|...|.++++.++++++++...+++++.+++.+++..++.+++..+.+++....++      
T Consensus       142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------  215 (654)
T TIGR00926       142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------  215 (654)
T ss_pred             HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------
Confidence            9999997443       699999999999999999988888877777776666777777777666653221110      


Q ss_pred             cCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhh
Q 008182          272 EDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQA  351 (575)
Q Consensus       272 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  351 (575)
                                 ....+|.+.+...             +   ..+++++.|++++.+.+++...++|..+.|+.+.+..|.
T Consensus       216 -----------~~~~~~ld~a~~~-------------~---~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa  268 (654)
T TIGR00926       216 -----------HWPLHWLDYAKDK-------------H---DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQA  268 (654)
T ss_pred             -----------ccchhHHHHhccc-------------c---ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence                       0112344443211             1   234578889999999999999999999999999999998


Q ss_pred             cccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          352 TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVA  431 (575)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (575)
                      ..++.+++++.+++++++.++++.++++.|++++.+.+..+|.+.  ..++..++.+|.+++++++++.+..+..++++.
T Consensus       269 ~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~--~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~  346 (654)
T TIGR00926       269 TRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGT--RFTSLRKMAVGGLLAALSFFVAALVQLKVNPTL  346 (654)
T ss_pred             HHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            888877778889999999999999999999999888888777543  478899999999999999999999987776544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.94  E-value=4.7e-24  Score=225.80  Aligned_cols=376  Identities=12%  Similarity=0.059  Sum_probs=247.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +.+|.+..+++..+...++.....+.++.|+.+++|.|..+.+++.+++.++..+++++.|+++||+ ||||+++++.++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCG   90 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHH
Confidence            3456677788888888898888889999999999999999999999999999999999999999999 999999999998


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+++.+.+.++...+.                ....+...+++.|+++|++.+...+...+++.|.+++++      |++
T Consensus        91 ~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (399)
T PRK05122         91 CALSGLLYLLAGLLAA----------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGR  148 (399)
T ss_pred             HHHHHHHHHHhhhhhc----------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hcc
Confidence            8887766655421111                000235678999999999999999999999999999888      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      ++++.....++|..+++.+++++.+..+|+..+++..+..++.++.. ...+   ++++++++                 
T Consensus       149 ~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~-----------------  207 (399)
T PRK05122        149 VISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRP---AVPPVKGE-----------------  207 (399)
T ss_pred             chhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCC---CCCCCCcc-----------------
Confidence            99999889999999999999999888999998887665544333222 1111   11110000                 


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHH-HHHHHHHHHHHhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLL-PIWATTIIFWTTY  340 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~  340 (575)
                                             +.++.                            +..|...... ...+....+....
T Consensus       208 -----------------------~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  236 (399)
T PRK05122        208 -----------------------RLPFR----------------------------RVLGRVWPYGMGLALASIGFGTIA  236 (399)
T ss_pred             -----------------------chhHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   00000                            0000000000 0111111111111


Q ss_pred             hcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 008182          341 AQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAA  420 (575)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~  420 (575)
                      ...+ .+..+ .+.  .      ..+.......+...+..++.+++    .+|.      ++.+.+..+..+.+++++..
T Consensus       237 ~~~~-~~~~~-~~~--~------~~~~~~~~~~~~~~~~~~~~g~l----~~r~------~~~~~~~~~~~~~~~~~~~~  296 (399)
T PRK05122        237 TFIT-LYYAA-RGW--D------GAALALTLFGVAFVGARLLFGNL----INRL------GGLRVAIVSLLVEILGLLLL  296 (399)
T ss_pred             HHHH-HHHHH-ccc--c------cchHHHHHHHHHHHHHHHHHHHH----HHHh------ccHHHHHHHHHHHHHHHHHH
Confidence            1111 11111 111  0      11112223333334444444444    3332      22233556666666666555


Q ss_pred             HHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008182          421 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFL  500 (575)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l  500 (575)
                      ...                   .+.+.+++..++.|++.+...|.......+..|++.||+++|+++....+|..+++.+
T Consensus       297 ~~~-------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        297 WLA-------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             HHh-------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432                   1333455667888999988888887788889999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 008182          501 VAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  547 (575)
Q Consensus       501 ~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~  547 (575)
                      .+.+.+..                +.+..|++.+++.+++.+..+..
T Consensus       358 ~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        358 AGLVASWF----------------GYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence            98876422                13566777777777766555444

>PRK03545 putative arabinose transporter; Provisional

Probab=99.94  E-value=2.5e-24  Score=227.31  Aligned_cols=374  Identities=14%  Similarity=0.107  Sum_probs=240.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +|..++.+.+..++.....|...+.+ +.+.+++|.+..+.+++.+.+.++..+++++.|+++||+ ||||++.++.++.
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~   84 (390)
T PRK03545          7 AWLRVVTLALAAFIFNTTEFVPVGLL-SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLF   84 (390)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHcch-HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence            34455555555555444444333334 456778999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.+++++++                        +...+++.|+++|++.+...+...+++.|++|+++      |+++
T Consensus        85 ~~~~~~~~~~~------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  134 (390)
T PRK03545         85 IASHVLSALAW------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQA  134 (390)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhH
Confidence            99999888873                        37778999999999999888999999999999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcccc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  262 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (575)
                      +++.....++|..++|.+++.+.+..|||+.|++.++..++..+......|+.++  +++.+..+               
T Consensus       135 ~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~---------------  197 (390)
T PRK03545        135 LSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS--EHSGSLKS---------------  197 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCcchHHH---------------
Confidence            9999999999999999999999988999999999887766555444333332111  00000000               


Q ss_pred             CCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 008182          263 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  342 (575)
Q Consensus       263 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  342 (575)
                                               .   ...                      .++.+........+......+.....
T Consensus       198 -------------------------~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (390)
T PRK03545        198 -------------------------L---PLL----------------------FRRPALVSLYLLTVVVVTAHFTAYSY  227 (390)
T ss_pred             -------------------------H---HHH----------------------HhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     0   000                      00111111111111111222222111


Q ss_pred             ccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008182          343 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  422 (575)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  422 (575)
                      .+. +.....+.+..      ..+.+.....+..++...+.+++    .+|..+       +.+..+..+..++......
T Consensus       228 ~~~-~l~~~~g~s~~------~~~~~~~~~~~~~~~g~~~~g~l----~dr~~~-------~~~~~~~~~~~~~~~~l~~  289 (390)
T PRK03545        228 IEP-FVQQVAGLSEN------FATLLLLLFGGAGIIGSVLFSRL----GNRHPS-------GFLLIAIALLLVCLLLLLP  289 (390)
T ss_pred             HHH-HHHHhcCCCcc------HHHHHHHHHHHHHHHHHHHHHHH----hhccch-------hHHHHHHHHHHHHHHHHHH
Confidence            111 11111111111      11222333334444444444444    343221       1244455554454433322


Q ss_pred             HHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  502 (575)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  502 (575)
                      .                  ..+...+++..++.|++.....+.....+.+..| +.||+++|+++....+|..+|+.+.|
T Consensus       290 ~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G  350 (390)
T PRK03545        290 A------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN  350 (390)
T ss_pred             H------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                  1233445667778888887777777788888777 57899999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhh
Q 008182          503 VVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  548 (575)
Q Consensus       503 ~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  548 (575)
                      .+.+..+                ....|+..+.+.+++.+..+...
T Consensus       351 ~~~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        351 QVSLHLG----------------LSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHhccC----------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence            8875322                35667777777777777665554

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=1.7e-24  Score=229.08  Aligned_cols=357  Identities=11%  Similarity=0.084  Sum_probs=235.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +.+|.++.+++..++..++++.+.++++.|+++++|++..+.+++.+.+.+.+.+++++.|+++||+ |||++++++.++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            4567788899999999999999999999999999999999999999999999999999999999998 999999999998


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.++.+++++                        .+.+++.+.+.+.+.+...++..+...|.+++++      |++
T Consensus        83 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (395)
T PRK10054         83 FASGFIAIPLVNN------------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTK  132 (395)
T ss_pred             HHHHHHHHHHHhH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHH
Confidence            8888888877632                        5556777878777777777888889999998887      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      ++++.+...++|..++|.+++++.+ .+|+.+|++.++..++.++...+..++.+++++++ + .+.             
T Consensus       133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~-~~~-------------  196 (395)
T PRK10054        133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-T-GSV-------------  196 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-h-hhh-------------
Confidence            9999999999999999999999875 78999999887776666544433333221111000 0 000             


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  341 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (575)
                                                 .+....                      .++++.....+..++..........
T Consensus       197 ---------------------------~~~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~~~~  227 (395)
T PRK10054        197 ---------------------------WSPSVL----------------------LQDKALLWFTCSGFLASFVSGAFAS  227 (395)
T ss_pred             ---------------------------hhhhhh----------------------ccCceehHHHHHHHHHHHHHHHhhh
Confidence                                       000000                      0011111111111111111111111


Q ss_pred             cccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008182          342 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  421 (575)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~  421 (575)
                      . ...+.....+.+.+    ....+.+...+.+......+    ...++.+|+      ++.+.+..+.++..++.+.+.
T Consensus       228 ~-~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~----~~g~~~~~~------~~~~~l~~~~~~~~~~~~~~~  292 (395)
T PRK10054        228 C-ISQYVMVVADSDFA----EKVVAVVLPVNAAMVVSLQY----SVGRRLNAA------NIRPLMTAGTLCFVIGLVGFI  292 (395)
T ss_pred             h-HHHHHHHhcccchH----HHHHHHHHHhhhhheeeehh----HHHHHHccC------CchhHHHHHHHHHHHHHHHHH
Confidence            1 11111110011100    00011122222222222222    222333332      233345667767777666554


Q ss_pred             HHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008182          422 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLV  501 (575)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~  501 (575)
                      ..                  ..+.+.+.+..++.++|+....|.....+.+.+|++.||++.+..+ ...+|..+|+.+.
T Consensus       293 ~~------------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~  353 (395)
T PRK10054        293 FS------------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS  353 (395)
T ss_pred             Hc------------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHH
Confidence            32                  1122234556789999999889999999999999999999998765 5668999999999


Q ss_pred             Hhhhhhc
Q 008182          502 AVVKKVT  508 (575)
Q Consensus       502 ~~v~~~~  508 (575)
                      |.+.+..
T Consensus       354 G~l~~~~  360 (395)
T PRK10054        354 GVILTTL  360 (395)
T ss_pred             HHHHHHc
Confidence            9987654

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=2.3e-23  Score=220.09  Aligned_cols=376  Identities=11%  Similarity=0.069  Sum_probs=242.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      ..+.++.+.+..++..++.+...+.+|.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ ||||+++++.+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLAC   91 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHH
Confidence            345677777777888888877888899999999999999999999999999999999999999999 9999999998877


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.+....+...+.                ....+...++++|+++|++.+...+...+.+.|.+|+++      |+++
T Consensus        92 ~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a  149 (392)
T PRK12382         92 GLAGLAYLLAAILPV----------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKV  149 (392)
T ss_pred             HHHHHHHHhhhcccc----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchh
Confidence            766543322211110                001347788999999999999888888889999999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcccc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD  262 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (575)
                      +++...+.++|..++|.+++++.+..+|++.+.+..+..++.+..   .. +.++.+++++...                
T Consensus       150 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~----------------  209 (392)
T PRK12382        150 MSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAF---NG-TVRKVPAHAGERP----------------  209 (392)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH---HH-hccCCCCCcccCc----------------
Confidence            999999999999999999999988889998776554433322221   11 1111111000000                


Q ss_pred             CCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 008182          263 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQ  342 (575)
Q Consensus       263 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  342 (575)
                                              +..+..                      +.... +.+    ...+....+......
T Consensus       210 ------------------------~~~~~~----------------------~~~~~-~~~----~~~l~~~~~~~~~~~  238 (392)
T PRK12382        210 ------------------------SLWSVV----------------------GLIWK-PGL----GLALQGVGFAVIGTF  238 (392)
T ss_pred             ------------------------hHHHHH----------------------HHHHH-hHH----HHHHHHHHHhHHHHH
Confidence                                    000000                      00000 000    011111111111111


Q ss_pred             ccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008182          343 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  422 (575)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  422 (575)
                      .+ .+..+ .+.  +      ..........+..++..++.+++.+|..+|          +.+..+..+.+++++....
T Consensus       239 ~~-~~~~~-~~~--~------~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~----------~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK12382        239 VS-LYFAS-KGW--A------MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV----------KVAIVSLLVETVGLLLLWL  298 (392)
T ss_pred             HH-HHHHh-cCC--c------hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------eehHHHHHHHHHHHHHHHH
Confidence            11 11111 010  0      111112223333444455555554433322          2255566666666655443


Q ss_pred             HHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  502 (575)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  502 (575)
                      .                   .+....++..++.+++.+...|.......+..|++.||+++|+++....+|..+++.+.+
T Consensus       299 ~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g  359 (392)
T PRK12382        299 A-------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAG  359 (392)
T ss_pred             c-------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2                   123345566788888888888888888889999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhh
Q 008182          503 VVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLIC  547 (575)
Q Consensus       503 ~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~  547 (575)
                      .+.+..+                ....|.+.+++.+++.+..+..
T Consensus       360 ~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        360 MLATSFG----------------YPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHhC----------------chHHHHHHHHHHHHHHHHHHhh
Confidence            8875332                2566777777777666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=9.1e-24  Score=223.83  Aligned_cols=348  Identities=13%  Similarity=0.095  Sum_probs=234.7

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG  107 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~  107 (575)
                      +.++...++..++++.+.+.++.|+++++|++..+.|.+.+...+...+.++++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999999999999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      ++.+++                        +.+.+++.|++.|++.+...|...+++.|.+|+++      |++++++.+
T Consensus        92 ~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~  141 (400)
T PRK11646         92 TMAIAH------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLM  141 (400)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence            887652                        36678889999999998888888999999999888      999999999


Q ss_pred             hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCc
Q 008182          188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV  267 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (575)
                      ...++|..+||.+++++. ..+|++.|++.++..++..+...+..++.+.+ +.+++..+                    
T Consensus       142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~--------------------  199 (400)
T PRK11646        142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVRTPVRE--------------------  199 (400)
T ss_pred             HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccchhhHH--------------------
Confidence            999999999999999998 67999999988776655544433332221100 00000000                    


Q ss_pred             cccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008182          268 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFS  347 (575)
Q Consensus       268 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  347 (575)
                                         ++   ...                      .++ +.+......+   ..++....+.....
T Consensus       200 -------------------~~---~~~----------------------~~~-~~~~~~~~~~---~~~~~~~~~~~~~~  231 (400)
T PRK11646        200 -------------------GM---TRV----------------------LRD-KRFVTYVLTL---TGYYMLAVQVMLML  231 (400)
T ss_pred             -------------------HH---HHH----------------------HcC-chHHHHHHHH---HHHHHHHHHHHHhh
Confidence                               00   000                      001 1111111111   11111111111111


Q ss_pred             hhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          348 VEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR  427 (575)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  427 (575)
                      +..   .... ++.....+.+..+..+......    ....++.+|+     .+..+.+..+.++.+++++.++..    
T Consensus       232 p~~---~~~~-~~~~~~~g~l~~~~~~~~~~~~----~~~~~~~~~r-----~~~~~~~~~~~~~~~~~~~~l~~~----  294 (400)
T PRK11646        232 PIM---VNDI-AGSPSAVKWMYAIEACLSLTLL----YPIARWSEKR-----FRLEHRLMAGLLIMSLSMFPIGMV----  294 (400)
T ss_pred             hhh---HHhh-cCCchHHHHHHHHHHHHHHHHH----HHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHh----
Confidence            110   0000 0000011122222222222221    1222223321     222334666777777776655543    


Q ss_pred             HHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          428 LSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  507 (575)
                                     .+..+++...++.+++.....|...+++.+.+|++.||+++|++++...+|..+|+.+.|.+.+.
T Consensus       295 ---------------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        295 ---------------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ---------------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence                           12233445567788888888999999999999999999999999999999999999999998865


Q ss_pred             c
Q 008182          508 T  508 (575)
Q Consensus       508 ~  508 (575)
                      .
T Consensus       360 ~  360 (400)
T PRK11646        360 G  360 (400)
T ss_pred             H
Confidence            4

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=6e-23  Score=210.26  Aligned_cols=380  Identities=14%  Similarity=0.147  Sum_probs=258.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      +..|..++.+.+..|+-...=+.....+|. +.+++|.|..++|++++.|.++..++.|+...+.||+ .||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHH
Confidence            445667777777777766666655555544 5669999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ++.++.++++++++                        +..+.++|++.|+..|.+.+...+..++..|+++      |+
T Consensus        87 lFi~~n~l~alAp~------------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~  136 (394)
T COG2814          87 LFIVSNLLSALAPS------------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RG  136 (394)
T ss_pred             HHHHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hh
Confidence            99999999999933                        8889999999999999999999999999999999      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcc
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  260 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (575)
                      ++.++...+..+...+|..++.++.+.+|||..|+..++..+++++..+...|+....++++.+..+..+.         
T Consensus       137 ~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~---------  207 (394)
T COG2814         137 RALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRL---------  207 (394)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHH---------
Confidence            99999999999999999999999999999999999998888888777776666110111111111111100         


Q ss_pred             ccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008182          261 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY  340 (575)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  340 (575)
                                                                              .++.+....+...++.....+..|
T Consensus       208 --------------------------------------------------------l~~p~v~~~l~~t~l~~~g~F~~f  231 (394)
T COG2814         208 --------------------------------------------------------LRRPGVLLGLLATFLFMTGHFALY  231 (394)
T ss_pred             --------------------------------------------------------hcCchHHHHHHHHHHHHcchhhhH
Confidence                                                                    011111212222223333333333


Q ss_pred             hcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 008182          341 AQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAA  420 (575)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~  420 (575)
                      .+...++ .+..+++.+      ..+.......+..++...+.+++    .+|       ++.+.+.....+.++.++.+
T Consensus       232 tYi~P~L-~~v~g~s~~------~vs~~Ll~~Gv~~~~Gn~~gGrl----~dr-------~~~~~l~~~~~l~a~~~l~l  293 (394)
T COG2814         232 TYIRPFL-ESVAGFSVS------AVSLVLLAFGIAGFIGNLLGGRL----ADR-------GPRRALIAALLLLALALLAL  293 (394)
T ss_pred             HhHHHHH-HHccCCCHh------HHHHHHHHHHHHHHHHHHHHhhh----ccc-------cchhHHHHHHHHHHHHHHHH
Confidence            3222211 111111111      12223333444444444444444    443       22333555656777777666


Q ss_pred             HHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008182          421 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFL  500 (575)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l  500 (575)
                      .+.                  ..+.+..+...++.+++........+....+.+ ++.++.+++++....++|..+|..+
T Consensus       294 ~~~------------------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~l  354 (394)
T COG2814         294 TFT------------------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAAL  354 (394)
T ss_pred             HHh------------------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHH
Confidence            554                  223334444555566655555555555555544 4669999999999999999999999


Q ss_pred             HHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          501 VAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       501 ~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                      .|.+.+..+                +....++.+.+.+++.+..+...++
T Consensus       355 GG~v~~~~g----------------~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         355 GGLVLDALG----------------YAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHhhc----------------hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999876432                3555677777777776666555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.93  E-value=3.5e-23  Score=219.53  Aligned_cols=358  Identities=14%  Similarity=0.092  Sum_probs=231.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      .+|..+...+...+++.+..+......| .+.+++|+++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            4455666666677777777766555554 55668999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.++++++.                        +...+++.|++.|++.+...+...+++.|.+++++      |++
T Consensus        90 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  139 (406)
T PRK11551         90 FGLFSLATAQAW------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGT  139 (406)
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHH
Confidence            888887777762                        36678899999999999999999999999999888      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      ++++.+...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++..+++....               
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------  204 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK---------------  204 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch---------------
Confidence            99999999999999999999999888899999998776555444443333232111000000000               


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  341 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (575)
                                            +.....+.  ..                 +.  .+..+........+......+....
T Consensus       205 ----------------------~~~~~~~~--~~-----------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~  241 (406)
T PRK11551        205 ----------------------QRAPVLRA--LF-----------------GE--GRATATLLLWISYFFTLIVLYFLLN  241 (406)
T ss_pred             ----------------------hhhhhHHH--Hh-----------------hh--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                                  00000000  00                 00  0011111111111111112222211


Q ss_pred             cccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008182          342 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  421 (575)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~  421 (575)
                      +.+. +.. ..+.+.      ...+.......+..++...+.+++.+|+.+|          +.+..+.+...++++.+.
T Consensus       242 ~~p~-~~~-~~g~s~------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        242 WLPS-LLV-GQGLSR------SQAGLVQIAFNIGGALGSLLIGALMDRLRPR----------RVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHH-HHH-hCCCCh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHH
Confidence            1111 111 111111      1122333444455555555666665544332          123334444444443333


Q ss_pred             HHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 008182          422 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLV  501 (575)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~  501 (575)
                      ..                   .+...+....++.+++.....+..+++..+.+|++.||+++|+.+....+|..+++.+.
T Consensus       304 ~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~  364 (406)
T PRK11551        304 AA-------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA  364 (406)
T ss_pred             hc-------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhH
Confidence            21                   12334455666777777777888889999999999999999999999999999999999


Q ss_pred             Hhhhh
Q 008182          502 AVVKK  506 (575)
Q Consensus       502 ~~v~~  506 (575)
                      +.+.+
T Consensus       365 g~l~~  369 (406)
T PRK11551        365 GQLLA  369 (406)
T ss_pred             hhhhc
Confidence            98764

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=4.2e-23  Score=223.45  Aligned_cols=401  Identities=11%  Similarity=0.041  Sum_probs=243.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .|.++.+.+..++..+..+.+.+.+|.+.. ++|.+..+.+++.+.+.++..++.+++|+++||+ ||||+++.+.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            456788888888988888888888888775 6999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.+++.++.                        +...++++|+++|++.+...|...+.+.|.+|+++      |++++
T Consensus        87 ~~~~~~~~~~------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  136 (471)
T PRK10504         87 LGSLFCALSG------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAM  136 (471)
T ss_pred             HHHHHHHHhC------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHH
Confidence            8888777652                        26668899999999999999999999999998877      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHH--HHHhccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVA--AIKKRKM  261 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  261 (575)
                      ++.....++|..++|.+++++.+..+|++.|++......+..+......++.+.++. +.+..........  .+... .
T Consensus       137 ~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~-~  214 (471)
T PRK10504        137 TFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLA-L  214 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHH-H
Confidence            999999999999999999999999999999998877666665555444443322111 1111111110000  00000 0


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHh------hhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHH
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAA------IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTII  335 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  335 (575)
                        .+..         +................      ..++..     ...|.  ...+ ....|.+...+...+....
T Consensus       215 --~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~-l~~~~~~~~~l~~~~~~~~  275 (471)
T PRK10504        215 --DGSK---------GLGLSPLAIAGLVAVGVVALLLYLLHARN-----NNRAL--FSLK-LFRTRTFSLGLAGSFAGRI  275 (471)
T ss_pred             --hcCC---------cCCcchHHHHHHHHHHHHHHHHHHHHHhc-----CCCCc--cCHH-HhcccchHHHHHHHHHHHH
Confidence              0000         00000000000000000      000000     00010  0111 1112222222111111111


Q ss_pred             HHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHH
Q 008182          336 FWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIV  415 (575)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~  415 (575)
                      ...........+.....+.+      ....+.......+..++..++..++    .+|+      ++.+.+..+..+.++
T Consensus       276 ~~~~~~~~~~~~~~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l----~~r~------g~~~~~~~~~~~~~~  339 (471)
T PRK10504        276 GSGMLPFMTPVFLQIGLGFS------PFHAGLMMIPMVLGSMGMKRIVVQV----VNRF------GYRRVLVATTLGLAL  339 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHc------CchHHHHHHHHHHHH
Confidence            11111111111211111111      1111122222233333333444444    4443      223335666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHH
Q 008182          416 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFF  495 (575)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~  495 (575)
                      +.+.+.....                ..+..++....++.|++.++.++..+..+.+.+|++.+|+++|++++.+.+|..
T Consensus       340 ~~~~~~~~~~----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~  403 (471)
T PRK10504        340 VSLLFMLVAL----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS  403 (471)
T ss_pred             HHHHHHhccc----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH
Confidence            6555443210                112222344567778888888989999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcC
Q 008182          496 VSSFLVAVVKKVTG  509 (575)
Q Consensus       496 lg~~l~~~v~~~~~  509 (575)
                      +|+.+.+.+.+..+
T Consensus       404 ig~~i~g~ll~~~g  417 (471)
T PRK10504        404 IGVTIAGLLLGLFG  417 (471)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999998876654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.93  E-value=1.5e-23  Score=223.32  Aligned_cols=392  Identities=13%  Similarity=0.047  Sum_probs=241.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+..++...++..++.......+|.+.. +++.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~   94 (417)
T PRK10489         17 PAFRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGL   94 (417)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHH
Confidence            34445555666666666656666666654 6788999999999999999999999999999999 999999998888777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.++++.....+.                   .+...+++.|++.|++.+...++..+++.|.+++++      |+++.+
T Consensus        95 ~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  149 (417)
T PRK10489         95 GFIGLALNAFLPE-------------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGA  149 (417)
T ss_pred             HHHHHHHHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHH
Confidence            7666543211011                   236677888999999988888888899999999887      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccC-CCCCchhHHHHHHHHHHHhccccC
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK-SSGSPIVHIFQVIVAAIKKRKMDL  263 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  263 (575)
                      +.+...++|..+||.+++.+.+..+|++.|++.++..+++.+..+..++ .+.++ +++++..+                
T Consensus       150 ~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~----------------  212 (417)
T PRK10489        150 ITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPREHPLRS----------------  212 (417)
T ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCcccccchHH----------------
Confidence            9999999999999999999988889999998877766655554433321 11100 00000000                


Q ss_pred             CCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008182          264 PCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQM  343 (575)
Q Consensus       264 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  343 (575)
                                              ..+..                      +.....+.+................... 
T Consensus       213 ------------------------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  245 (417)
T PRK10489        213 ------------------------LLAGF----------------------RFLLASPVVGGIALLGGLLTMASAVRVL-  245 (417)
T ss_pred             ------------------------HHHHH----------------------HHHHcChHHHHHHHHHHHHHHHHhHHHh-
Confidence                                    00000                      0000001111111111111111111111 


Q ss_pred             cchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008182          344 ITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALV  423 (575)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  423 (575)
                      ...+..+..+.+.      ...+.+.....+..++...+.+++    .+|.      ++.+.+..+.++.+++++.+...
T Consensus       246 ~p~~~~~~~g~~~------~~~g~~~~~~~~g~~ig~~~~~~l----~~~~------~~~~~l~~~~~~~~~~~~~~~~~  309 (417)
T PRK10489        246 YPALADEVWQMGA------AQIGLLYAAVPLGAALGALTSGWL----AHSA------RPGLLMLLSTLGSFLAVGLFGLM  309 (417)
T ss_pred             hHHHHHhccCCCh------hHhHHHHHHHHHHHHHHHHHHHHh----hhcc------CcchHHHHHHHHHHHHHHHHHcc
Confidence            1111111111111      112223333444444444444433    3321      12233556666666666555432


Q ss_pred             HHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008182          424 ERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAV  503 (575)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~  503 (575)
                                         .+........++.|++.+...+...+++.+..|++.||+++|+++....+|..+|+.+.|.
T Consensus       310 -------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~  370 (417)
T PRK10489        310 -------------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGG  370 (417)
T ss_pred             -------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHH
Confidence                               2233455667778888888788888899999999999999999999999999999999998


Q ss_pred             hhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcc
Q 008182          504 VKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKA  558 (575)
Q Consensus       504 v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~~~  558 (575)
                      +.+..+                ....++..++..++..++.+...+++++.++++
T Consensus       371 l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        371 LGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            875332                123445555555554444545545555444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.92  E-value=3e-23  Score=215.55  Aligned_cols=358  Identities=13%  Similarity=0.109  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 008182           29 LVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGM  108 (575)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l  108 (575)
                      .++...++..++.......+|.|.. +++.+..+.+++.+++.++..+++++.|+++||+ ||||+++++.++..++..+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            4556677777777777777888876 5799999999999999999999999999999999 9999999999988888887


Q ss_pred             HHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhh
Q 008182          109 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  188 (575)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  188 (575)
                      .+++...+.                   .+.+.++++|++.|++.+...+...+++.|++|+++      |++.+++.+.
T Consensus        81 ~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  135 (365)
T TIGR00900        81 LPFVALLGG-------------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQA  135 (365)
T ss_pred             HHHHHHcCC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHH
Confidence            777632111                   247778999999999999999999999999999887      9999999999


Q ss_pred             hHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchh-HHHHHHHHHHHhccccCCCCc
Q 008182          189 FISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIV-HIFQVIVAAIKKRKMDLPCNV  267 (575)
Q Consensus       189 ~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  267 (575)
                      +.++|..++|.+++++.+..+|++.|++.++..+++.+.....+.+.+.++++ .+.+ +..                  
T Consensus       136 ~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------------  196 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAASEI-QALSNAVL------------------  196 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccc-cccchhHH------------------
Confidence            99999999999999999889999999987776665554444332211110000 0000 000                  


Q ss_pred             cccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHH-HHHHHHHHHHhhhcccch
Q 008182          268 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP-IWATTIIFWTTYAQMITF  346 (575)
Q Consensus       268 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~  346 (575)
                                        .+..+.                 +     +...+.+.+..... .+................
T Consensus       197 ------------------~~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (365)
T TIGR00900       197 ------------------RDTREG-----------------I-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFPY  236 (365)
T ss_pred             ------------------HHHHhH-----------------H-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence                              000000                 0     00000111111111 111111111111111111


Q ss_pred             hhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 008182          347 SVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERK  426 (575)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  426 (575)
                      +..+..+.+      ....+.+.....+..++...+.+++    .+|.      ++.+.+..+..+.+++++......  
T Consensus       237 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~--  298 (365)
T TIGR00900       237 VQSKYLGRG------STHYGWVLAAFGLGALLGALLLGLL----GRYF------KRMALMTGAIFVIGLAILVVGLTP--  298 (365)
T ss_pred             HHHHHhCCc------hHHHHHHHHHHHHHHHHHHHHHHHH----HHHh------chhHHHHHHHHHHHHHHHHHHhhc--
Confidence            211111111      1112223333444444444444433    3332      222334455555566555554331  


Q ss_pred             HHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008182          427 RLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  506 (575)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  506 (575)
                                     + +.+..++..++.+++.+...+...++..+..|++.||+++|+++....++..+++.+.+.+.+
T Consensus       299 ---------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 ---------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ---------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1 234456678888999999999999999999999999999999999999999999999998764

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.92  E-value=3.2e-23  Score=225.72  Aligned_cols=396  Identities=12%  Similarity=0.071  Sum_probs=245.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |..+..+++..++..+..-.+.+.+|.. .+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i-~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTL-SMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            4556666777777766666666666655 568999999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccC-CCCChHhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQF-DEKDEKEKTQMAYF  182 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~  182 (575)
                      ++++++++++                        +...++++|+++|+|.+...+.....+.+.+ ++++      |+++
T Consensus        83 ~~~~~~~~a~------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~  132 (495)
T PRK14995         83 LASLAAAFSP------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMA  132 (495)
T ss_pred             HHHHHHHHcC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHH
Confidence            9999999873                        3777999999999999998888888787776 4455      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH------HHHHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQV------IVAAI  256 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  256 (575)
                      ++++....++|..+||.+++++.+..+||+.|++...+.++.+++..+..|+.+.++.++.+.......      ....+
T Consensus       133 ~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~  212 (495)
T PRK14995        133 LGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSA  212 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987776666555555444332222111121111100      00111


Q ss_pred             HhccccCCCCccccccCCcccccccCCcchh-h----hhH-HhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHH
Q 008182          257 KKRKMDLPCNVGMLYEDTPEASRIHHTEQFH-F----LDK-AAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIW  330 (575)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  330 (575)
                      +.. .+               .......... .    ... .....+.     ....|..  ..+-.++ +.+.......
T Consensus       213 ~~~-~~---------------~~~~~~~~~~~~~~~~~~l~~f~~~e~-----~~~~p~~--~~~lf~~-~~~~~~~~~~  268 (495)
T PRK14995        213 KTA-LK---------------GFLSLWVTSLTLLTGALLLGLFIRTQL-----AASRPMI--DMRLFTH-RIILSGVVMA  268 (495)
T ss_pred             Hhc-cc---------------cCCchHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCc--CHHHhCC-cccHHHHHHH
Confidence            110 00               0000000000 0    000 0000000     0111210  1111111 1111111111


Q ss_pred             HHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHH
Q 008182          331 ATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGL  410 (575)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~  410 (575)
                      +.....+.........+.+...+.+      ....+.......+...+..++.+++.+|..+          .+.+..|.
T Consensus       269 ~~~~~~~~~~~~~~~~~lq~v~g~s------~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~----------~~~~~~g~  332 (495)
T PRK14995        269 MTAMITLVGFELLMAQELQFVHGLS------PLEAGMFMLPVMVASGFSGPIAGILVSRLGL----------RLVATGGM  332 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----------hHHHHHHH
Confidence            1111111111111111111111111      1112333344445555566666665443322          22356677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHH
Q 008182          411 VLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTL  490 (575)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~  490 (575)
                      ++.+++++.+.....                ..+.+......++.|+|.++..+.....+.+.+|++.+|.+++++++.+
T Consensus       333 ~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  396 (495)
T PRK14995        333 ALSALSFYGLAMTDF----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAY  396 (495)
T ss_pred             HHHHHHHHHHHHhcC----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHH
Confidence            777777665544311                1233344567888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 008182          491 SLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       491 ~lg~~lg~~l~~~v~~~  507 (575)
                      .+|+.+|+.+.+.+.+.
T Consensus       397 ~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        397 ELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.92  E-value=1.7e-22  Score=213.63  Aligned_cols=179  Identities=14%  Similarity=0.161  Sum_probs=151.7

Q ss_pred             CCCCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q 008182           17 DPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA   96 (575)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~   96 (575)
                      +...+..|+.+..+.+..++.....|.....++. +.+++|+++.+.++..+.+.++..+++++.|+++||+ ||||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~   89 (394)
T PRK10213         12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI   89 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence            3344556776666666666666666655566665 4568999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      ++.++.+++.+++++++                        +.+.+++.|+++|++.+...+...+++.|++|+++    
T Consensus        90 ~~~~~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~----  141 (394)
T PRK10213         90 LFAVLLTLSCLLVSFAN------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT----  141 (394)
T ss_pred             HHHHHHHHHHHHHHHHC------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH----
Confidence            99999999988887763                        37779999999999999999999999999999888    


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                        |+++.++...+.++|..++|.+++++.+..+||+.|++.++..++..+.
T Consensus       142 --~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~  190 (394)
T PRK10213        142 --VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFW  190 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999999999999899999999877655544433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.92  E-value=5.9e-23  Score=217.70  Aligned_cols=382  Identities=13%  Similarity=0.079  Sum_probs=243.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchh-----hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSAT-----SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIF   98 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   98 (575)
                      .|.+..+++..++..++++...+.++.|++ ++|.+..+     .+++.+++.+...++.++.|+++||+ |||+++.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~   90 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHH
Confidence            345667777888888888888888999886 58888655     48889999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhh
Q 008182           99 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  178 (575)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (575)
                      .++..++.+++.+++                        +.+.+++.|++.|++.+ ..+...+.+.|.+++++      
T Consensus        91 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------  139 (408)
T PRK09874         91 ALGMGIVMVLMGLAQ------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------  139 (408)
T ss_pred             HHHHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------
Confidence            988888888777653                        36678899999999865 45777788899998888      


Q ss_pred             hhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHh
Q 008182          179 MAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKK  258 (575)
Q Consensus       179 r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (575)
                      |+++.++.....++|..++|.+++.+.+..+|++.|++.++..++..+...+..++.+...+++.+ .+           
T Consensus       140 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------  207 (408)
T PRK09874        140 SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEM-LH-----------  207 (408)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhh-hH-----------
Confidence            999999999999999999999999998888999999988877666555444433321100000000 00           


Q ss_pred             ccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 008182          259 RKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWT  338 (575)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  338 (575)
                                                   ..+....                      .++.+.......   .......
T Consensus       208 -----------------------------~~~~~~~----------------------~~~~~~~~~~~~---~~~~~~~  233 (408)
T PRK09874        208 -----------------------------MREVVTS----------------------LKNPKLVLSLFV---TTLIIQV  233 (408)
T ss_pred             -----------------------------HHHHHHh----------------------CcCCchHHHHHH---HHHHHHH
Confidence                                         0000000                      000011110111   1111111


Q ss_pred             hhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHH
Q 008182          339 TYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMA  418 (575)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~  418 (575)
                      ........+..................+.+..+..+..++..+..+++.+|+.+|          +.+..+..+..++++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~  303 (408)
T PRK09874        234 ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE----------KILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------hhHHHHHHHHHHHHH
Confidence            1111111111110000000000000011122233344445555555554433322          224455555555444


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHH
Q 008182          419 AAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSS  498 (575)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~  498 (575)
                      .....                   .+.+.+.+..++.|++.+...|...+.+.+..|++.+|+.+++++....+|..+|+
T Consensus       304 ~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp  364 (408)
T PRK09874        304 PMSFV-------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGP  364 (408)
T ss_pred             HHHHh-------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhH
Confidence            43322                   12334555677889999999999998888999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          499 FLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       499 ~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                      .+.+.+.+..                ++...|++.+++.+++.+..+...+
T Consensus       365 ~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        365 LMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999875422                1356677788877777666555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.92  E-value=1.2e-22  Score=217.71  Aligned_cols=169  Identities=9%  Similarity=-0.003  Sum_probs=141.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++..++..++..+..+.+...++.+ .+++|++..+.+++.+.+.++..++++++|+++||+ |||+++.++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            33444444555555445555556555 457999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .++++++.+                        ...+++.|++.|++.|...+...+++.|++++++      |++++++
T Consensus       102 ~~~~~~~~~------------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~  151 (434)
T PRK11663        102 NILFGFSSS------------------------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAI  151 (434)
T ss_pred             HHHHHHHhH------------------------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHH
Confidence            988887733                        6668888999999999888889999999999888      9999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAII  226 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~  226 (575)
                      ++.+.++|..++|.+.+++.+..+||+.|++.++..++..+
T Consensus       152 ~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~  192 (434)
T PRK11663        152 WNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGL  192 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999889999999987766554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.92  E-value=2.8e-22  Score=212.82  Aligned_cols=359  Identities=14%  Similarity=0.095  Sum_probs=222.3

Q ss_pred             CcchhHHHHHHHHHHHH---HHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERL---STMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      +.+..+..+...+++..   +...+.+.++. +.+++|.+..+.++..+.+.+++.+++++.|+++||+ ||||+++++.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence            34444444444444433   44444455554 4578999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      .+..++.+++.++.                        +...+++.|++.|++.+...+...+.+.|.+++++      |
T Consensus        86 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~  135 (406)
T PRK15402         86 AFFILTCLAILLAQ------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------A  135 (406)
T ss_pred             HHHHHHHHHHHHHc------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------H
Confidence            99998888887763                        26668899999999999888888899999999887      8


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhc
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKR  259 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (575)
                      .+..++......+|..++|.+++++.+..+|++.|++.++..++..+......|+.+++++++.+..+..+         
T Consensus       136 ~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  206 (406)
T PRK15402        136 IKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGR---------  206 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHH---------
Confidence            88888888788899999999999998888999999987777666555444333322111100000000000         


Q ss_pred             cccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHh
Q 008182          260 KMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTT  339 (575)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  339 (575)
                                                    +....                      .++++................ .
T Consensus       207 ------------------------------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-~  233 (406)
T PRK15402        207 ------------------------------DYKLV----------------------LKNRRFVAGALALGLVSLPLL-A  233 (406)
T ss_pred             ------------------------------HHHHH----------------------HcCcHHHHHHHHHHHHHHHHH-H
Confidence                                          00000                      011111111111111111111 1


Q ss_pred             hhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHH
Q 008182          340 YAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA  419 (575)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~  419 (575)
                      +......+..+..+.+..      ..+.......+..++..++.+++    .+|.      +..+.+..+.++..++.+.
T Consensus       234 ~~~~~p~~~~~~~g~~~~------~~g~~~~~~~~~~~~g~~~~g~l----~~r~------~~~~~~~~~~~~~~~g~~~  297 (406)
T PRK15402        234 WIALSPVILISGEQLSSY------EYGLLQVPVFGALIAGNLTLARL----TSRR------PLRSLIRMGLWPMVAGLLL  297 (406)
T ss_pred             HHHHhHHHHHHHhCCCHH------HHHHHHHHHHHHHHHHHHHHHHH----HHhc------CHHHHHHHHHHHHHHHHHH
Confidence            111111111111111100      01111111222233333343443    3332      2333466677777777776


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 008182          420 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSF  499 (575)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~  499 (575)
                      +......              ...+..+++...++.+++++...+..+..... .+++.||+..+++++.+.+|..+|+.
T Consensus       298 ~~~~~~~--------------~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~  362 (406)
T PRK15402        298 AALATVI--------------SSHAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIE  362 (406)
T ss_pred             HHHHHHc--------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHH
Confidence            6654211              02244556778888999998888777665543 34589999999999999999999999


Q ss_pred             HHHhhhh
Q 008182          500 LVAVVKK  506 (575)
Q Consensus       500 l~~~v~~  506 (575)
                      +.+.+.+
T Consensus       363 ~~~~l~~  369 (406)
T PRK15402        363 LSKHAYL  369 (406)
T ss_pred             HHHhccc
Confidence            9987753

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.92  E-value=3.6e-22  Score=223.12  Aligned_cols=156  Identities=17%  Similarity=0.156  Sum_probs=132.8

Q ss_pred             HHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008182           45 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  124 (575)
Q Consensus        45 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  124 (575)
                      ...+.+++.+++|++..+.+++.+++.++..++++++|+++||+ |||+++++++++.+++.++++++++          
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s----------  254 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG----------  254 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence            44556677788999999999999999999999999999999999 9999999999999999888887733          


Q ss_pred             CcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhh
Q 008182          125 ETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l  204 (575)
                                    ...++++|++.|+|.|+..+...++++|.+|++.      |++.+++......+|.++++.++..+
T Consensus       255 --------------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~i  314 (742)
T TIGR01299       255 --------------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAI  314 (742)
T ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          6778999999999999999999999999999888      99999999999999999998877655


Q ss_pred             ccc-------------ccchhHHHHHHHHHHHHHHHHHhc
Q 008182          205 QDE-------------ISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       205 ~~~-------------~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ...             .+||+.|++.++..++.++..++.
T Consensus       315 l~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l  354 (742)
T TIGR01299       315 IPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM  354 (742)
T ss_pred             HHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence            432             358998888777666555554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.92  E-value=5.1e-23  Score=212.91  Aligned_cols=350  Identities=20%  Similarity=0.258  Sum_probs=226.1

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008182           31 LGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLA  110 (575)
Q Consensus        31 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~  110 (575)
                      ++..++..+........++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.+++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4556677777777777777688999999999999999999999999999999999998 999999999999999966665


Q ss_pred             HHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhH
Q 008182          111 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  190 (575)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  190 (575)
                      +++                        +.+.++++|++.|++.+...+...+++.|++++++      |++.+++.....
T Consensus        81 ~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~  130 (352)
T PF07690_consen   81 FAS------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGF  130 (352)
T ss_dssp             HHC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHH
T ss_pred             hhh------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchh
Confidence            542                        25579999999999999999999999999999988      999999999999


Q ss_pred             HHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCcccc
Q 008182          191 SLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGML  270 (575)
Q Consensus       191 ~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (575)
                      ++|..++|.+++++.+..+|++.|++.++..++..++.....++.+.+++++++.++                       
T Consensus       131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----------------------  187 (352)
T PF07690_consen  131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES-----------------------  187 (352)
T ss_dssp             HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT-----------------------
T ss_pred             hhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc-----------------------
Confidence            999999999999999889999999999888877766533333221111111000000                       


Q ss_pred             ccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHH-HHHHHhhhcccchhhh
Q 008182          271 YEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATT-IIFWTTYAQMITFSVE  349 (575)
Q Consensus       271 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  349 (575)
                             .   ...+                     .+++. ..+...+.+.+.......... ..+... ......+..
T Consensus       188 -------~---~~~~---------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  234 (352)
T PF07690_consen  188 -------E---SKKP---------------------KPLKP-GFKSLFKNPVLWILLIAFFLFFFVFSGF-SFFLPLYLQ  234 (352)
T ss_dssp             -------T-----HH---------------------HCCCH--CTHHHHHHCCHHHHHHHHHHHHHHHHH-HHHHHHHCC
T ss_pred             -------c---cccc---------------------ccccc-ccccccccchhhhhhhhhhHHHHHHHHh-hcccchhhh
Confidence                   0   0000                     00000 001111222111111111111 111111 111111111


Q ss_pred             hhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          350 QATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLS  429 (575)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  429 (575)
                      +..+.+ .    ....+.+..+..+...+..++.+++.+|+.+          .+..........++.+.+.....    
T Consensus       235 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~----  295 (352)
T PF07690_consen  235 EVLGFS-G----PSQAGLLFSIFGIVGIIGSLLAGRLSDRFGR----------RRRLLIAILLLILGALGLLLLPF----  295 (352)
T ss_dssp             HHHHCC-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHCCSHH----
T ss_pred             hccCCC-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHHHHHHH----
Confidence            111111 0    0112223344444555555555555443222          12233333333333333332211    


Q ss_pred             HHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHH
Q 008182          430 VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSS  498 (575)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~  498 (575)
                                  ..+..+.+...++.|++.+...+...+++.+.+|++.||+++|+.++..++|..++|
T Consensus       296 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 ------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                        123345666788899999999999999999999999999999999999999999886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.91  E-value=2e-22  Score=211.10  Aligned_cols=157  Identities=20%  Similarity=0.195  Sum_probs=138.8

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      ....+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++++++.            
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------   80 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------   80 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence            4455668889999999999999999999999999999999999 999999999999999988888773            


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                                  +.+.++++|++.|++.+...+....++.|.+|+++      |++.+++.....++|..+++.+++++.
T Consensus        81 ------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~  142 (399)
T TIGR00893        81 ------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWIL  142 (399)
T ss_pred             ------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence                        37779999999999999999999999999999888      999999999999999999999999998


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +..+|++.|++.++..++..+...+..+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (399)
T TIGR00893       143 IHFSWQWAFIIEGVLGIIWGVLWLKFIP  170 (399)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHhhheec
Confidence            8899999999887776665555444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=2e-22  Score=218.46  Aligned_cols=156  Identities=13%  Similarity=0.064  Sum_probs=125.5

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCcc
Q 008182           56 MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQAS  135 (575)
Q Consensus        56 l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (575)
                      ++.+..+.+++.+++.++..++++++|+++||+ ||||+++++.+++.++.++++++...-.            .-..++
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~------------~~~~~~  116 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT------------SIGPDN  116 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc------------cccccc
Confidence            388999999999999999999999999999999 9999999999999888877765411000            000112


Q ss_pred             chhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc--------cc
Q 008182          136 GFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ--------DE  207 (575)
Q Consensus       136 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~--------~~  207 (575)
                      ......++++|+++|++.|...+...++++|++|+++      |++++++...+..+|..+++.+++.+.        +.
T Consensus       117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  190 (479)
T PRK10077        117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT  190 (479)
T ss_pred             hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence            2335678899999999999999999999999999998      999999999999999999887765443        35


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHh
Q 008182          208 ISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       208 ~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      .+||++|++.++..++..+..++
T Consensus       191 ~gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        191 DGWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHc
Confidence            68999999877766665544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=9.3e-23  Score=220.58  Aligned_cols=181  Identities=13%  Similarity=-0.018  Sum_probs=140.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhH---HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIA---VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~---~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      |..+.++...++..+..|...   ....+.+.+++|++..+.+++.+.+.+++.++++++|+++||+ |||+++.+++++
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~  103 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLIL  103 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHH
Confidence            334444544444444444322   2335567889999999999999999999999999999999999 999999999888


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+++.++.++.....                   ..+...+++.|++.|++.+...|...++++|++|+++      |++
T Consensus       104 ~~~~~~~~~~~~~~~-------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~  158 (467)
T PRK09556        104 SAICMLGFGASLGSG-------------------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGR  158 (467)
T ss_pred             HHHHHHHHHHHHhcc-------------------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eee
Confidence            888776666531100                   0247789999999999999999999999999999999      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccc---cchhHHHHHHHHHHHHHHHHHhc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEI---SRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~---~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +++++..+.++|..+++.+..++.+..   +|+..|.+.++..++..+..++.
T Consensus       159 a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        159 FLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             eEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998887765543   58988888776655544444433

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.91  E-value=2.6e-22  Score=216.03  Aligned_cols=146  Identities=18%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccch
Q 008182           58 LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGF  137 (575)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (575)
                      .+..+.+++.+++.++..++++++|+++||+ |||++++++.++..++.+++.+..+.                     .
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~---------------------~  125 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA---------------------L  125 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc---------------------c
Confidence            3389999999999999999999999999999 99999999999999998888665321                     1


Q ss_pred             hhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH---hhhcccccchhHH
Q 008182          138 QMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL---VYIQDEISRSVGY  214 (575)
Q Consensus       138 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~---~~l~~~~~~~~~f  214 (575)
                      +.+.++++|+++|+|.+...+...++++|++++++      |++++++.+.+.++|..+++.++   +...+..+||+.|
T Consensus       126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f  199 (481)
T TIGR00879       126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL  199 (481)
T ss_pred             chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            25578999999999999999999999999999998      99999999999999999999998   7776778999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 008182          215 GICSVAMFMAIIIFLAG  231 (575)
Q Consensus       215 ~~~~~~~~~~~~~~~~~  231 (575)
                      ++.++..++.++..++.
T Consensus       200 ~~~~~~~~~~~~~~~~l  216 (481)
T TIGR00879       200 GLQLIPAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99666555554444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.91  E-value=1.2e-22  Score=216.93  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=144.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +++.+....+..+++.+..+.. .+..+++.+++|+++.+.+++.+++.++..+++++.|+++||+ |||+++.++.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~   93 (426)
T PRK12307         16 QKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY   93 (426)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            3555666666666766666554 4455667889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +++.++++++.                        +...++++|++.|++.+...+....++.|.+|+++      |+++
T Consensus        94 ~~~~~~~~~~~------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~  143 (426)
T PRK12307         94 SVGTGLSGLAS------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKA  143 (426)
T ss_pred             HHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHh
Confidence            99998888873                        36778999999999999999999999999999988      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVA  220 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~  220 (575)
                      .++...+.++|..+++.+.+.+.+..+|++.|++....
T Consensus       144 ~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        144 SAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999999998889999999875443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1.1e-21  Score=210.23  Aligned_cols=175  Identities=17%  Similarity=0.160  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC---CCchhhHHHHH---HHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMH---LPSATSANIVT---DFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~~~~---~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      .+....+..+++.+.... ...+.+++.++++   .+..+.+.+.+   ..+++..++++++|+++||+ ||||++.++.
T Consensus        23 ~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~  100 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISV  100 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHH
Confidence            343444445666665544 5667778888874   45554444444   44455559999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      +++++++++++++++...                ........+++.|+++|+|.|...|...++++|++|+++      |
T Consensus       101 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------r  158 (432)
T PRK10406        101 CMMCFGSLVIACLPGYET----------------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------K  158 (432)
T ss_pred             HHHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------c
Confidence            999999999988743210                000123468899999999999999999999999999988      9


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhc--------ccccchhHHHHHHHHHHHH
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQ--------DEISRSVGYGICSVAMFMA  224 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~--------~~~~~~~~f~~~~~~~~~~  224 (575)
                      ++..++.+...+.|..+++.+...+.        +.+|||++|++.++..++.
T Consensus       159 g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        159 GFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            99999888888888888877655543        2579999999877655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.91  E-value=3.8e-22  Score=212.24  Aligned_cols=180  Identities=11%  Similarity=0.008  Sum_probs=150.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      .+|+.++.+++..+++......+ ....+.+++++|++..+.+++.+++.+++.+++++.|+++||+ |||+++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            35666666666666665555544 4445588999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.++++++++                        ...++++|++.|++.+...|....+++|++|+++      |++
T Consensus        83 ~~~~~~~~~~~~~------------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~  132 (412)
T TIGR02332        83 WGIASTATMFATG------------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RAR  132 (412)
T ss_pred             HHHHHHHHHHhcC------------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHH
Confidence            9999999988733                        6678999999999999998988899999999888      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcc------cccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQD------EISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .+++++...++|..+++.+++++.+      ..|||+.|++.++..++..++..+..|
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence            9999999999999999999998863      368999999977766554444433333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.91  E-value=3.5e-22  Score=210.98  Aligned_cols=176  Identities=15%  Similarity=0.192  Sum_probs=151.0

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q 008182           19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIF   98 (575)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~   98 (575)
                      ..+.+|+.+....+..+++.+..+.+....+ .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            4456778788888888888887776655554 56778999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhh
Q 008182           99 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  178 (575)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (575)
                      .++..++.+++++++                        +...+++.|++.|++.+...+...+++.|++++++      
T Consensus        84 ~~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------  133 (405)
T TIGR00891        84 IVLFSAGTLACGFAP------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------  133 (405)
T ss_pred             HHHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------
Confidence            999999988887763                        26678899999999999999999999999999988      


Q ss_pred             hhhhhhhhhhhHHHhHHHHHHHHhhhccccc--chhHHHHHHHHHHHHHH
Q 008182          179 MAYFFSRFFFFISLGTLMAVTVLVYIQDEIS--RSVGYGICSVAMFMAII  226 (575)
Q Consensus       179 r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~--~~~~f~~~~~~~~~~~~  226 (575)
                      |++++++.....++|..+++.+.+.+.+..+  |++.|++.++..++.++
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~  183 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALW  183 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887666  99999876655444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.91  E-value=5.9e-22  Score=209.53  Aligned_cols=365  Identities=13%  Similarity=0.090  Sum_probs=229.2

Q ss_pred             HHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhh
Q 008182           35 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTK  114 (575)
Q Consensus        35 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~  114 (575)
                      ...+..++.+.+.+| .+.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..++.+.+++.++++++++
T Consensus        19 ~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~~   96 (393)
T PRK09705         19 LNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYPQ   96 (393)
T ss_pred             HHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCcc
Confidence            333334444544454 56779999999999999999999999999999999999 9999999999999999999998843


Q ss_pred             hcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhH
Q 008182          115 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  194 (575)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  194 (575)
                                              +..++++|+++|+|.+...+....++.++++ ++      |+++++.+..+.+.|.
T Consensus        97 ------------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~  145 (393)
T PRK09705         97 ------------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGG  145 (393)
T ss_pred             ------------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHH
Confidence                                    6668899999999999988998999999986 66      8999999999999999


Q ss_pred             HHHHHHHhhhcccc-cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccC
Q 008182          195 LMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYED  273 (575)
Q Consensus       195 ~l~~~i~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (575)
                      .+++.+++++.++. +||..+.+.++..++.+...+...++.+++++++ +                             
T Consensus       146 ~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------------------  195 (393)
T PRK09705        146 GLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT-T-----------------------------  195 (393)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC-C-----------------------------
Confidence            99999999988775 7998876655444433333322221111000000 0                             


Q ss_pred             CcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcc
Q 008182          274 TPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATT  353 (575)
Q Consensus       274 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (575)
                               .                       .+.   +  ..++.+.....+........++....+.+..+ .+ .+
T Consensus       196 ---------~-----------------------~~~---~--~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l-~~-~g  236 (393)
T PRK09705        196 ---------T-----------------------TPV---R--VVFTPRAWTLGVYFGLINGGYASLIAWLPAFY-IE-IG  236 (393)
T ss_pred             ---------c-----------------------CCc---c--cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cC
Confidence                     0                       000   0  00011111111112222222222222222222 11 11


Q ss_pred             cccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008182          354 MERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARA  433 (575)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  433 (575)
                      .+..      ..+....+..+..++...+.+++    .+|..      +.+.+..+..+..++.+.+...          
T Consensus       237 ~s~~------~ag~~~~~~~i~~i~g~~~~g~l----~~r~~------~~~~~~~~~~l~~~~~~~~~~~----------  290 (393)
T PRK09705        237 ASAQ------YSGSLLALMTLGQAAGALLMPAM----ARHQD------RRKLLMLALVLQLVGFCGFIWL----------  290 (393)
T ss_pred             CChh------hhhHHHHHHHHHHHHHHHHHHHH----Hhhcc------chHHHHHHHHHHHHHHHHHHHc----------
Confidence            1111      12233344444455555444444    44322      2233555666666665544322          


Q ss_pred             hCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008182          434 VGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKG  512 (575)
Q Consensus       434 ~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~  512 (575)
                              +.+...+  ..++.+++.+...|.......+..| ++.+|+.+|+.+....++..+++.+.+.+.+..+   
T Consensus       291 --------~~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g---  357 (393)
T PRK09705        291 --------PLQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG---  357 (393)
T ss_pred             --------cchHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence                    1111111  2344567777777777666666664 6789999999999999999999999998876432   


Q ss_pred             CCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008182          513 GGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK  552 (575)
Q Consensus       513 ~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~  552 (575)
                                  .+...|.+.++..++..++.+.+.++++
T Consensus       358 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        358 ------------NYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             ------------CchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                        1245566666666666666666655543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=8.9e-23  Score=206.28  Aligned_cols=408  Identities=14%  Similarity=0.046  Sum_probs=256.5

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHH---HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAV---NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI   97 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~   97 (575)
                      +.++|--+.+++..+....++|.+.-   ...+++.++.++|.+|.|++.+++++++.++..+.|.++||. +.|+.+-+
T Consensus        21 ~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~   99 (448)
T COG2271          21 KTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAF   99 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehH
Confidence            33445556677777788888887753   355789999999999999999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhh
Q 008182           98 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  177 (575)
Q Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  177 (575)
                      ++++.++..++++++++                        ...+.+..++.|...|.-.|.+...++.+|++++     
T Consensus       100 gLilsai~nil~Gfs~s------------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e-----  150 (448)
T COG2271         100 GLILSAIVNILFGFSPS------------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE-----  150 (448)
T ss_pred             HHHHHHHHHHHHhhhhH------------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc-----
Confidence            99999999999999854                        6667788888999999999999999999999999     


Q ss_pred             hhhhhhhhhhhhHHHhHHHHHHHH--hhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHH
Q 008182          178 QMAYFFSRFFFFISLGTLMAVTVL--VYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAA  255 (575)
Q Consensus       178 ~r~~~~~~~~~~~~ig~~l~~~i~--~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (575)
                       ||+..++.+.+.|+|+++.|.+.  +++..+.+||..|++++++.++..+..++..+..+++..- .+.++.       
T Consensus       151 -RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~~-------  221 (448)
T COG2271         151 -RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEEY-------  221 (448)
T ss_pred             -cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHHh-------
Confidence             99999999999999999999999  9999989999999999988776555554443322211110 111110       


Q ss_pred             HHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHH
Q 008182          256 IKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTII  335 (575)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  335 (575)
                          +.    ++...++.     .. ..+..+.                    |+.+ .+.+...|.+..+...-++.-+
T Consensus       222 ----~~----d~~e~~~~-----~~-~~~~ls~--------------------~~i~-~~YVL~Nk~iW~la~a~vfvYi  266 (448)
T COG2271         222 ----RG----DPLEIYEE-----EK-ENEGLTA--------------------WQIF-VKYVLKNKLIWLLALANVFVYV  266 (448)
T ss_pred             ----hc----Cchhhhhh-----hc-cCCCccH--------------------HHHH-HHHHHcChHHHHHHHHHHHHHH
Confidence                00    00000000     00 0000000                    1100 0111112222222111111111


Q ss_pred             HHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHH
Q 008182          336 FWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIV  415 (575)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~  415 (575)
                      .-.....+...|..+..+.+..      .......+.-...+....+.++++|++.+.++.     +.  ..+..+...+
T Consensus       267 vR~gi~dW~p~YL~e~k~~s~~------~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~-----p~--~~i~~~~i~~  333 (448)
T COG2271         267 VRYGINDWGPLYLSEVKGFSLV------KANWAISLFEVAGLPGTLLAGWLSDKLFKGRRG-----PM--ALIFMLLITA  333 (448)
T ss_pred             HHHHHhhhHHHHHHHhcCCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHhcccccc-----hH--HHHHHHHHHH
Confidence            1111233334454544444433      223334445556666666778888777754221     11  1222222233


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhh--hhheecccCCcchhHHHHHHHHHHHHH-
Q 008182          416 GMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTG--QLDFFITKSPKGMKTMSTGLFLTTLSL-  492 (575)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~--~~~~~~~~~P~~~rg~~~g~~~~~~~l-  492 (575)
                      +++.+-..+                 ..+....  ..++..+|.....|-  .-..+.|.+|++..|++.|+..++..+ 
T Consensus       334 ~~~~~w~~~-----------------~~~~~l~--~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~  394 (448)
T COG2271         334 SLVLYWLAP-----------------NGSYLLD--AILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLI  394 (448)
T ss_pred             HHHHHHcCC-----------------CccHHHH--HHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHh
Confidence            333332210                 1122223  333333444443333  223456899999999999999999988 


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          493 GFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       493 g~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                      |..++.+..+++.+.      -+|          ...|+++.+.++++.+.+....+.
T Consensus       395 Ga~~a~~~~g~i~d~------~gW----------~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         395 GAALAGLPLGYIADT------WGW----------DGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             hHHhcCCcceeeEec------CCC----------cchHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888877543      256          455677777777776666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.91  E-value=7.9e-22  Score=206.44  Aligned_cols=172  Identities=12%  Similarity=0.038  Sum_probs=137.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHHH
Q 008182           31 LGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI-FAAVQTLGTGML  109 (575)
Q Consensus        31 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~-~~~~~~~~~~l~  109 (575)
                      ++..++..++.....+.++.|+.+++|.+..+.+++.+.+.+...+.+++.|+++||+ ||||.+++ +..+..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            4557778888888889999999999999999999999999999999999999999999 99887655 455555666666


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh--hhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF--FSRFF  187 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~  187 (575)
                      ++++                        +...+++.|++++.+.+...|...++..|..++++      |...  .+...
T Consensus        82 ~~~~------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~  131 (375)
T TIGR00899        82 AWNR------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMR  131 (375)
T ss_pred             Hhcc------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHH
Confidence            6652                        25667788888887777777887888888776655      5543  57777


Q ss_pred             hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      ...++|..++|.+++++.+..+||++|++.++..++..+..++..|
T Consensus       132 ~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       132 AQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             HHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7889999999999999998899999999988776665555444333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=7.8e-22  Score=206.29  Aligned_cols=156  Identities=15%  Similarity=0.085  Sum_probs=123.1

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      ....+.+.+++|++..+.+++.+.+.+++.+++++.|+++||+ |||+++..++.....+.. ....  .+         
T Consensus        11 ~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~--~~---------   77 (368)
T TIGR00903        11 SPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLD--PF---------   77 (368)
T ss_pred             HhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHH--hc---------
Confidence            3344555778999999999999999999999999999999999 999887665554444332 2222  01         


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                                  +...+++.|+++|+|.+.. +.....++|++|+++      |++++++...+.++|..+++.+++++.
T Consensus        78 ------------~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903        78 ------------NYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             ------------cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        3778999999999999864 455555689999887      999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +..|||+.|++.++..++..++.++..|
T Consensus       139 ~~~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       139 TAGGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999877665555444444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=2e-22  Score=217.12  Aligned_cols=352  Identities=10%  Similarity=-0.005  Sum_probs=211.1

Q ss_pred             HHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCc
Q 008182           49 VTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETAT  128 (575)
Q Consensus        49 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  128 (575)
                      .+.+.+++|.+.++.+++.+.+.++..++.+++|+++||+ |||++++.+.++..++.++++++++              
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------  106 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN--------------  106 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh--------------
Confidence            3455678999999999999999999999999999999999 9999999999999999888887733              


Q ss_pred             ccccCccchhhHHHH-HHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc
Q 008182          129 HTCEQASGFQMGVLY-IALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE  207 (575)
Q Consensus       129 ~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~  207 (575)
                                ...++ ..|++.|++.+...+...+++.++++ ++      |+++.++.+.+.++|..++|.+++++.+.
T Consensus       107 ----------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~  169 (455)
T TIGR00892       107 ----------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFES  169 (455)
T ss_pred             ----------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence                      44454 45688899988766666777888885 56      99999999999999999999999999998


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchh
Q 008182          208 ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFH  287 (575)
Q Consensus       208 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  287 (575)
                      .|||++|++.++..+++.+..++.++..+.++..+.+..             +...++..       .  +........+
T Consensus       170 ~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-------~--~~~~~~~~~~  227 (455)
T TIGR00892       170 FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK-------------EGLPPDGS-------T--KKLSKKSTAE  227 (455)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc-------------ccCCCCCc-------c--ccccccchhh
Confidence            999999999888766655554444332111000000000             00000000       0  0000000000


Q ss_pred             hhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccc
Q 008182          288 FLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGS  367 (575)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (575)
                      .                 ..++.  ..+-.++ +.+...+.   ...+....+......+.........+    ....+.
T Consensus       228 ~-----------------~~~~~--~~~~~~~-~~~~~~~~---~~~l~~~~~~~~~~~l~~~~~~~g~s----~~~~g~  280 (455)
T TIGR00892       228 K-----------------INRFL--DFSLFTH-RGFLVYLS---GNVIMFLGFFAPIIFLVPYAKDKGVD----EYEAAF  280 (455)
T ss_pred             h-----------------hhhhc--chHHhcC-chHHHHHH---HHHHHHHHccchHHHHHHHHHHcCCC----HHHHHH
Confidence            0                 00000  0000111 11111111   11111111111111111111111111    111223


Q ss_pred             cccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehh
Q 008182          368 LTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFL  447 (575)
Q Consensus       368 ~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (575)
                      +..+..+..++..++.+++.++    ...  +......+..+.++.+++++.....                   .+.++
T Consensus       281 ~~~~~~~~~~~~~~~~g~l~d~----~~~--~~~~~~~~~~~~~~~~l~~ll~~~~-------------------~~~~~  335 (455)
T TIGR00892       281 LLSIIGFVDIFARPSCGLIAGL----KWI--RPHVQYLFSFALLFNGLTHLLCALA-------------------GDYTG  335 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc----ccc--CHHHHHHHHHHHHHHHHHHHHHHHh-------------------chHHH
Confidence            3444555555666666655432    111  0111122233333333433333221                   23345


Q ss_pred             hHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008182          448 LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKK  506 (575)
Q Consensus       448 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  506 (575)
                      ++...++.|++.+...+...+++.+.+|++.+|+++|+++....+|..+|+.+.+.+.+
T Consensus       336 ~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       336 LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            56678888899888889999999999999999999999999999999999999997754

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.91  E-value=1.4e-22  Score=220.05  Aligned_cols=398  Identities=13%  Similarity=0.122  Sum_probs=242.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .+..+++..+...+........ .+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVA-IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            3444555555555555444444 4556678999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+++++++                        +...++++|+++|++.+...+...+++.|.+|+++      |++++++
T Consensus        81 ~~~~~~~~------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  130 (485)
T TIGR00711        81 SLLCGVAP------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAI  130 (485)
T ss_pred             HHHHhCcC------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence            99888763                        36778999999999999999999999999999888      9999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHH--HHHHHHHhccccC
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQ--VIVAAIKKRKMDL  263 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  263 (575)
                      +.....+|..++|.+++++.+..+|++.|++.+...++..+...+..++.++++.++.+......  .............
T Consensus       131 ~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~  210 (485)
T TIGR00711       131 WGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEG  210 (485)
T ss_pred             HHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999988776666555544443332211111111111000  0000000000000


Q ss_pred             CCCccccccCCcccccccCCcchhhhh--H-----HhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHH
Q 008182          264 PCNVGMLYEDTPEASRIHHTEQFHFLD--K-----AAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIF  336 (575)
Q Consensus       264 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  336 (575)
                      + .           ......++.....  .     .....+.     ..+.|..  ..+..++++.....+..+.....+
T Consensus       211 ~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  271 (485)
T TIGR00711       211 P-E-----------RGWFDSNEILILSITGLVAIIAFVVWEL-----TDDNPLV--DLRLFKYRNFTIGCVYMSLLGLGL  271 (485)
T ss_pred             C-C-----------CCCCCchHHHHHHHHHHHHHHHHHHHHH-----cCCCCcc--CHHHHcCCChHHHHHHHHHHHHHH
Confidence            0 0           0000000000000  0     0000000     0011110  011111111111121222222222


Q ss_pred             HHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHH
Q 008182          337 WTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG  416 (575)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~  416 (575)
                      +......+ .+..+..+.+      ....+.......+..++..++.+++.+|..+          .+.+..|..+.+++
T Consensus       272 ~~~~~~~p-~~~~~~~g~s------~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~----------~~~~~~g~~~~~~~  334 (485)
T TIGR00711       272 YGSFYLLP-LYLQQVLGYT------ALQAGLHILPVGLAPMLSSPIAGRMGDKIDP----------RKLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHH-HHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----------HHHHHHHHHHHHHH
Confidence            21111111 1111111111      1112333444555566666666665433322          23366677777777


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV  496 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  496 (575)
                      ..++.....               +..+...++...++.|+|.++..+.......+..|++.+|+++|++++.+.+|+.+
T Consensus       335 ~~~~~~~~~---------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~i  399 (485)
T TIGR00711       335 FYWRAFTFT---------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSI  399 (485)
T ss_pred             HHHHhccCC---------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHH
Confidence            666552100               02233445666888999999988888888888899999999999999999999999


Q ss_pred             HHHHHHhhhh
Q 008182          497 SSFLVAVVKK  506 (575)
Q Consensus       497 g~~l~~~v~~  506 (575)
                      |+.+.+.+.+
T Consensus       400 g~~i~g~~~~  409 (485)
T TIGR00711       400 GTALITTILT  409 (485)
T ss_pred             HHHHHHHHHH
Confidence            9999998765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09952 shikimate transporter; Provisional

Probab=99.91  E-value=1.9e-21  Score=208.49  Aligned_cols=180  Identities=9%  Similarity=0.101  Sum_probs=133.2

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcC--CCCchhhHHHH-----HHHHHHHHHHHHHHHHHhhcccchH
Q 008182           20 KTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTM--HLPSATSANIV-----TDFMGTSFLLCLLGGFLADTFLGRY   92 (575)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l--~~~~~~~~~~~-----~~~~~~~~~~~~~~G~laDr~~Gr~   92 (575)
                      ...++|.++..++..+++.+....+....+.++.+++  +.++.+ +++.     ++.+++..+++++.|+++||+ |||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr   94 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRK   94 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccH
Confidence            3444566667777777777766655444555666555  666663 4443     234555678888999999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCC
Q 008182           93 KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD  172 (575)
Q Consensus        93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  172 (575)
                      +++.++.+++++++++++++++.....                ......+++.|+++|++.|...+....++.|++|+++
T Consensus        95 ~~l~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~  158 (438)
T PRK09952         95 RMLMLTVWMMGIATALIGLLPSFSTIG----------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK  158 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcHHHHH----------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC
Confidence            999999999999999999884422100                0012257889999999999999999999999999998


Q ss_pred             hHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc--------ccccchhHHHHHHHHHHH
Q 008182          173 EKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ--------DEISRSVGYGICSVAMFM  223 (575)
Q Consensus       173 ~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~--------~~~~~~~~f~~~~~~~~~  223 (575)
                            |+...+....+..+|..++..+..++.        +.+|||.+|++.++..++
T Consensus       159 ------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        159 ------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             ------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence                  999988888888888888877666554        247999999987665433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=2.8e-22  Score=209.14  Aligned_cols=354  Identities=11%  Similarity=0.031  Sum_probs=221.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |+.+...+...++... .|. ...+.+++.+++|++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~   79 (377)
T TIGR00890         3 WYVLVGTVIMCFTSGY-VYT-WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYG   79 (377)
T ss_pred             EEEeHHHHHHHHHhhH-Hhh-hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHH
Confidence            3444444433333332 443 34566778889999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++++++++                        ...++++|++.|++.+...+.....+.++++ ++      |+++.
T Consensus        80 ~~~~~~~~~~~------------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~  128 (377)
T TIGR00890        80 LGFTFYAIADS------------------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLAS  128 (377)
T ss_pred             HHHHHHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHH
Confidence            99998888743                        6778899999999999877777788888886 45      89999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccC
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDL  263 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (575)
                      ++.....++|..+++.+.+.+.+..+||+.|++.++..++..+..++..++.++++.++.. .                 
T Consensus       129 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------  190 (377)
T TIGR00890       129 GIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-E-----------------  190 (377)
T ss_pred             HHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-c-----------------
Confidence            9999999999887766777777778999999988877666555544433221110000000 0                 


Q ss_pred             CCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008182          264 PCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQM  343 (575)
Q Consensus       264 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  343 (575)
                                      . ..+..++   ...                      .++++........+......... .  
T Consensus       191 ----------------~-~~~~~~~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~--  225 (377)
T TIGR00890       191 ----------------V-SVKDYTV---WEM----------------------LRTPQFWVLYLSFFLNAVSGLLL-I--  225 (377)
T ss_pred             ----------------c-chhhhhH---HHH----------------------HcCccHHHHHHHHHHHhHHHHHH-H--
Confidence                            0 0000000   000                      00111111111111111111111 1  


Q ss_pred             cchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008182          344 ITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALV  423 (575)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  423 (575)
                       ..+.........+    ....+.+..+..+...+..++.+++.+|..+|          +.+..+.++.+++.+.+...
T Consensus       226 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~~~~~~~~~~~~~  290 (377)
T TIGR00890       226 -GLYKPYGQSLGLS----DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ----------KTMSIVFGISAVGMAAMLFI  290 (377)
T ss_pred             -HHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHc
Confidence             1111110011111    00122334455555666666666665554433          12455666666666554432


Q ss_pred             HHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008182          424 ERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAV  503 (575)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~  503 (575)
                      .                 ..+....+...++.+++.+...+....+..+..|++.||++.|+.+....+|..+++.+.+.
T Consensus       291 ~-----------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~  353 (377)
T TIGR00890       291 P-----------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASH  353 (377)
T ss_pred             c-----------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            1                 11112233344556666666666677788899999999999999999999999999999998


Q ss_pred             hhh
Q 008182          504 VKK  506 (575)
Q Consensus       504 v~~  506 (575)
                      +.+
T Consensus       354 l~~  356 (377)
T TIGR00890       354 ALT  356 (377)
T ss_pred             HHh
Confidence            764

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.90  E-value=5.2e-24  Score=223.42  Aligned_cols=365  Identities=35%  Similarity=0.559  Sum_probs=240.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCC
Q 008182           92 YKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEK  171 (575)
Q Consensus        92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~  171 (575)
                      .|+++++.+++.+|.+++.+++..+.               .++..+...+++++.++++|.|+.+|++.++++|+++++
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~---------------~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~   65 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPS---------------LPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED   65 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSS---------------C------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcch---------------hhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc
Confidence            47899999999999999888855333               123345678999999999999999999999999999987


Q ss_pred             -ChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccccc-CCCCCchhH-H
Q 008182          172 -DEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK-KSSGSPIVH-I  248 (575)
Q Consensus       172 -~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~  248 (575)
                       +++    |.++|+++|++.|+|..+++.+.+++.+..||.+.|.++++..+++++.++..+++++.+ ++.+.+..+ .
T Consensus        66 ~~~~----~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~  141 (372)
T PF00854_consen   66 DDSR----RDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFI  141 (372)
T ss_dssp             TTTH----HHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--S
T ss_pred             chhh----hhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhH
Confidence             443    999999999999999999999999999999999999999999999999999998888776 566666555 4


Q ss_pred             HHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCcc-ccchhhhhHHHHHHHH
Q 008182          249 FQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKL-CSVTSVEEVKMVARLL  327 (575)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l  327 (575)
                      ..+.....+++....+....++..........................+.       ...|+. ++.+++++.|.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~k~~~~~~  214 (372)
T PF00854_consen  142 KLVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE-------IFFWALFCQVQRVEELKALIRFL  214 (372)
T ss_dssp             HHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC-------HHHHTTTSSTTTHHHCCHHHCHH
T ss_pred             HHHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh-------hhhcccCCccceeeeeeeeeecc
Confidence            44445555554443332221111110000000000001111111111000       011111 2345566667777777


Q ss_pred             HHHHHHHHHHHhhhcccchhhhhhccccccccc-ccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHH
Q 008182          328 PIWATTIIFWTTYAQMITFSVEQATTMERSIGR-FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM  406 (575)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~  406 (575)
                      +.+.....++..+.|.......+...+++...+ +.+|++.+++++.+..+++.|+.+++++|+.++..   .++...++
T Consensus       215 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~---~~~~~~k~  291 (372)
T PF00854_consen  215 PIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI---QPSPPQKF  291 (372)
T ss_dssp             HCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT---------HHHH
T ss_pred             ccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc---cchhhhhh
Confidence            777777777777777777777777777777777 89999999999999999999999999999998432   57899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHH
Q 008182          407 AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF  486 (575)
Q Consensus       407 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~  486 (575)
                      .+|.++..+++++.+..+..+.+..+..+      ..+..|.+..+++..++|.+..+...+..++.+|++..+..+|++
T Consensus       292 ~~G~~~~~~~~~~~~~v~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~  365 (372)
T PF00854_consen  292 GIGMVFAILAMFVAAIVEIRRLCYAQPCG------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIW  365 (372)
T ss_dssp             HHH-HHHHHHHHTTTHHHH---HH----T------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhcccccC------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHH
Confidence            99999999999998887765554444433      455578889999999999999999999777777777777777776


Q ss_pred             HHHHH
Q 008182          487 LTTLS  491 (575)
Q Consensus       487 ~~~~~  491 (575)
                      .....
T Consensus       366 ~~~~~  370 (372)
T PF00854_consen  366 FALSA  370 (372)
T ss_dssp             HHHH-
T ss_pred             HHHhc
Confidence            65543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.90  E-value=2.5e-21  Score=203.30  Aligned_cols=178  Identities=15%  Similarity=0.121  Sum_probs=147.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +++..+.+....+...++.....+.+| ++.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            344455455555555555554445454 45678999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.+++++++                        +...+++.|++.|++.+...+...+++.|.+|+++      |++.
T Consensus        81 ~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~  130 (385)
T TIGR00710        81 ALSSLGLALSN------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRI  130 (385)
T ss_pred             HHHHHHHHHHc------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHH
Confidence            99988887763                        26678899999999999999999999999999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      +++.+...++|..++|.+++++.+..+|+..|++.++..++..+...+..
T Consensus       131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (385)
T TIGR00710       131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFIL  180 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999889999999987776666555544433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.90  E-value=1.7e-21  Score=205.26  Aligned_cols=175  Identities=9%  Similarity=0.093  Sum_probs=150.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      ++.++.+.+..++.....+...+.++. +.+++|.+.++.+++.+.+.+++.+++++.|+++||+ |||+++.++..+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            356777777888887777777776765 4668999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.+++++++                        +.+.+++.|++.|++.+...+.....+.|++++++      |++.+
T Consensus        80 ~~~~l~~~~~------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~  129 (382)
T PRK10091         80 IGNAMFTLSS------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAV  129 (382)
T ss_pred             HHHHHHHHhC------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHH
Confidence            9999888873                        37779999999999999888888888899998877      89999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      +....+..+|..++|.+++++.+..+||+.|++.++..++..+....
T Consensus       130 ~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~  176 (382)
T PRK10091        130 AGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF  176 (382)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            99888999999999999999998899999999988766655544333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.90  E-value=2.4e-21  Score=209.95  Aligned_cols=175  Identities=12%  Similarity=0.046  Sum_probs=133.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      ++.+.......++..+..+.+.+. .+++.+++|++..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++.+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPL-LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            344444445555555555554433 3466789999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++++++++                        ...+++.|+++|++.+...+ ....+++++|+++      |++++
T Consensus       113 ~~~~~~~~~~s------------------------~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~  161 (476)
T PLN00028        113 PAVFCMSLVSS------------------------ATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTAN  161 (476)
T ss_pred             HHHHHHHHhcC------------------------HHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHH
Confidence            88888877633                        56678889999998876543 4557899999888      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcc---------cccchhHHHHHHHHHHHHHHHHHhc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQD---------EISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~---------~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++.+...++|+.+++.+.+.+..         ..|||+.|++.+++.++..+..++.
T Consensus       162 g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        162 GIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99887778888877666654421         2489999999887766555444443

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=4.3e-21  Score=203.00  Aligned_cols=175  Identities=12%  Similarity=0.096  Sum_probs=145.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +++|..+..++..++.....+..-..++. +.+++|+|.++.+++.+.+.++..++++++|+++||+ ||||++.++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~   81 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFAL   81 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence            45677777777777776666555555555 5678999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.+++++++                        +...+++.|+++|++.+...+...+.+.|.+|+++      |++
T Consensus        82 ~~i~~~l~~~~~------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~  131 (394)
T PRK03699         82 MILAVAGLMFSH------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGS  131 (394)
T ss_pred             HHHHHHHHHHcc------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHH
Confidence            999988888762                        36678899999999999888888999999998877      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhc-ccccchhHHHHHHHHHHHHHHHH
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQ-DEISRSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~-~~~~~~~~f~~~~~~~~~~~~~~  228 (575)
                      .++..+...++|+.++|.+.+++. +..+||++|.+.++..++..+..
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            998888888899999998888875 45799999998776655544443

>TIGR00895 2A0115 benzoate transport

Probab=99.90  E-value=1.5e-21  Score=205.21  Aligned_cols=176  Identities=15%  Similarity=0.158  Sum_probs=144.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      .++.+...++..++..+..+.. ....+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            3444444545555555544433 4455566778999999999999999999999999999999999 9999999999988


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.+++.++.                        +...+++.+++.|++.+...+...+++.|.+|+++      |+++
T Consensus        93 ~~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~  142 (398)
T TIGR00895        93 SVFTLLCALAT------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTA  142 (398)
T ss_pred             HHHHHHHHHcc------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchh
Confidence            88888877662                        26668889999999999999999999999999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      +++.....++|..+++.+++++.+..+|+..|++.++..++..++...
T Consensus       143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999899999999886554444444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.90  E-value=2.1e-21  Score=200.13  Aligned_cols=348  Identities=20%  Similarity=0.280  Sum_probs=255.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG  107 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~  107 (575)
                      +.+....++..+..+...+.++.|.+ ++|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            34566777888888888888888765 5799999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      +..+++                        +...+++.|++.|++.+...+...+++.|.+++++      |++.+++.+
T Consensus        80 ~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  129 (352)
T cd06174          80 LLAFAS------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFS  129 (352)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHH
Confidence            887762                        36778999999999999999999999999999988      999999999


Q ss_pred             hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCc
Q 008182          188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV  267 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (575)
                      ...++|..++|.+++.+.+..+|++.|++.++..++..+...+..|             ..                   
T Consensus       130 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-------------------  177 (352)
T cd06174         130 AGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR-------------LL-------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-------------------
Confidence            9999999999999999999889999999888776666555443320             00                   


Q ss_pred             cccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchh
Q 008182          268 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFS  347 (575)
Q Consensus       268 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  347 (575)
                                                                             ....+..+........ +......+
T Consensus       178 -------------------------------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~  201 (352)
T cd06174         178 -------------------------------------------------------LLLALAFFLLSFGYYG-LLTYLPLY  201 (352)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHhHHHH-HHHHHHHH
Confidence                                                                   0000001111111111 11111111


Q ss_pred             hhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          348 VEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR  427 (575)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  427 (575)
                      ..+..+.+      ....+.+.....+...+..++..++.+|..+|+      .   .+..+.++..++.+.....    
T Consensus       202 ~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~---~~~~~~~~~~i~~~~~~~~----  262 (352)
T cd06174         202 LQEVLGLS------AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR------L---LLLIGLLLAALGLLLLALA----  262 (352)
T ss_pred             HHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------H---HHHHHHHHHHHHHHHHHHh----
Confidence            11110111      112234455556666666666666654443331      0   3677777777777766643    


Q ss_pred             HHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          428 LSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  507 (575)
                                     .+.+......++.+++.+...+....++.+..|++.|++.+|+++....+|..+++.+.+.+.+.
T Consensus       263 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~  327 (352)
T cd06174         263 ---------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT  327 (352)
T ss_pred             ---------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                           22445677889999999999999999999999999999999999999999999999999987641


Q ss_pred             cCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHH
Q 008182          508 TGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYL  545 (575)
Q Consensus       508 ~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~  545 (575)
                      .      +          ....+++.+++.+++.+.++
T Consensus       328 ~------~----------~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         328 G------G----------YGGVFLILAALALLAALLLL  349 (352)
T ss_pred             c------C----------cchHHHHHHHHHHHHHHHhe
Confidence            1      1          24556777777776666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.90  E-value=4.2e-21  Score=202.98  Aligned_cols=167  Identities=13%  Similarity=0.192  Sum_probs=139.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.++...++..++...+...++.. .+++|.+..+.+++.+.+.+.+.++.+++|+++||+ ||||+++++.++.++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            456777778888877665555555554 568899999999999999999999999999999999 999999999999998


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.+++.++.+                           .++.|+++|++.+...|+..+++.|.+|+++      |+++.+
T Consensus        81 ~~~~~~~~~~---------------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~  127 (393)
T PRK11195         81 GCLLMLFGIH---------------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANG  127 (393)
T ss_pred             HHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            8877766521                           2678999999999999999999999999988      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      +.....++|..+||.++|++.+. .|+..+.+.+...+++.+.
T Consensus       128 ~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~  169 (393)
T PRK11195        128 WMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALF  169 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999874 4777777666554444433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.90  E-value=6.3e-21  Score=207.51  Aligned_cols=176  Identities=14%  Similarity=0.060  Sum_probs=132.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchh-hHH-----HHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSAT-SAN-----IVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI   97 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~   97 (575)
                      ++.+....+..+++.+.+.. ..+..+++.++++.+..+ ..+     +.++..++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            45566666777777766654 456667888887644422 122     24667788999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhh
Q 008182           98 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  177 (575)
Q Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  177 (575)
                      +++++++++++++++++...+.                .....++++.|+++|+|.|+..+...++++|++|+++     
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g----------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-----  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG----------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-----  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH----------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-----
Confidence            9999999999999884422100                0001248899999999999999999999999999998     


Q ss_pred             hhhhhhhhhhhhHHHhHHHHHHHHhhhc--------ccccchhHHHHHHHHHHH
Q 008182          178 QMAYFFSRFFFFISLGTLMAVTVLVYIQ--------DEISRSVGYGICSVAMFM  223 (575)
Q Consensus       178 ~r~~~~~~~~~~~~ig~~l~~~i~~~l~--------~~~~~~~~f~~~~~~~~~  223 (575)
                       |++..++...+..+|..+++.+...+.        ..+|||++|++.++..++
T Consensus       152 -Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        152 -RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence             999999888877888887776554432        257999999987654443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=4.7e-21  Score=207.16  Aligned_cols=150  Identities=9%  Similarity=0.082  Sum_probs=131.1

Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCc
Q 008182           55 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  134 (575)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (575)
                      +++++..+.|++.+.+.+++.++++++|+++||+ |||+++.++.++.+++.+++.++.+                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6899999999999999999999999999999999 9999999999988888877765422                    


Q ss_pred             cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc-ccchhH
Q 008182          135 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE-ISRSVG  213 (575)
Q Consensus       135 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~-~~~~~~  213 (575)
                        .+...+++.|+++|++.+...|....+++|++|+++      |++++++...+.++|..+++.+.+++.+. .+|+++
T Consensus       129 --~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       129 --GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             --cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence              125568899999999999999999999999999988      99999999999999999999999999888 499999


Q ss_pred             HHHHHHHHHHHHHHHHhcCc
Q 008182          214 YGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       214 f~~~~~~~~~~~~~~~~~~~  233 (575)
                      |++.++..++..++++...+
T Consensus       201 f~i~~~~~~~~~~~~~~~~~  220 (465)
T TIGR00894       201 FYVFGIVGCAWSLLWFVFPA  220 (465)
T ss_pred             hhhhhHHHHHHHHHHHHHhc
Confidence            99988776665555544433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.90  E-value=7.3e-21  Score=201.06  Aligned_cols=174  Identities=14%  Similarity=0.086  Sum_probs=144.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +.+|.++......++..+..+...+.+|. +.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~-i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIAD-MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            35667777777777777666655555554 4578999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.+++.+++                        +...+++.|++.|++.+...+....+..|.+++++      |++
T Consensus        83 ~~~~~~~~~~~~------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  132 (394)
T PRK11652         83 FILGTLVALFAH------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRH  132 (394)
T ss_pred             HHHHHHHHHHHc------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHH
Confidence            998888877662                        26678899999999988877777888889888777      888


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      +.++...+..++..++|.+++++.+..+|++.|++.++..++..+.
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~  178 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFS  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence            9999889999999999999999998889999999877655544433

>TIGR00897 2A0118 polyol permease family

Probab=99.90  E-value=8.6e-21  Score=201.23  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=141.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      -+.||.+....+..++...+.+....++++++ +++|++..+.+++.+.+.++..++.++.|+++||+ ||||++..+..
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            45677888888888888888887888899988 56899999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +..++.+++..... ..                   .+...+++.|++.|+|.+...+...+.+.+.+++++      |+
T Consensus        87 ~~~~~~~~~~~~~~-~~-------------------~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g  140 (402)
T TIGR00897        87 LWCVGHAAFIVFGL-GH-------------------ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LS  140 (402)
T ss_pred             HHHHHHHHHHHHhc-cC-------------------ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HH
Confidence            98888765532111 00                   136667788999999988777777778889898888      99


Q ss_pred             hhhhhhhhhHHHhH-HHHHHHHhhhcccccchhHHHHHHHH
Q 008182          181 YFFSRFFFFISLGT-LMAVTVLVYIQDEISRSVGYGICSVA  220 (575)
Q Consensus       181 ~~~~~~~~~~~ig~-~l~~~i~~~l~~~~~~~~~f~~~~~~  220 (575)
                      +++++.+.+.++|. .++|.+++++.+..||+..+|.....
T Consensus       141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~  181 (402)
T TIGR00897       141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF  181 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            99999999999996 57899999998888877666654433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.89  E-value=2.9e-21  Score=208.02  Aligned_cols=174  Identities=9%  Similarity=-0.029  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHHhh---HHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGI---AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~---~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++...++.....|..   .....+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++++.++.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i  105 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAA  105 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHH
Confidence            44444444444544433   23445677877 99999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.++++++....                    .+...+++.|++.|++.+...+.....+.|++++++      |+++++
T Consensus       106 ~~~~~~~~~~~~--------------------~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~  159 (452)
T PRK11273        106 VMLFMGFVPWAT--------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS  159 (452)
T ss_pred             HHHHHHhhhccc--------------------ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHH
Confidence            888887752100                    136667888999999999888888888899999888      999999


Q ss_pred             hhhhhHHHhHH-HHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Q 008182          185 RFFFFISLGTL-MAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       185 ~~~~~~~ig~~-l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  229 (575)
                      +++.+.++|+. .+|+.+..+....+||+.|++.++..++..++..
T Consensus       160 ~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        160 VWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999998875 4555433333345899999988776555444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.89  E-value=1.4e-20  Score=198.89  Aligned_cols=180  Identities=15%  Similarity=0.130  Sum_probs=130.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHhhcccchHHHHH-HH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADTFLGRYKTIA-IF   98 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~-~~   98 (575)
                      +..-...+..++..++.+++.....+.++.|+++++|++.++.|++.+.+.+ +..++++++|+ +||+ ||||.++ .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~   88 (393)
T PRK15011         11 KSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFC   88 (393)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHH
Confidence            3334466777788999999999899999999999999999999999876655 55555555666 9999 9998754 45


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHH-HHHHHHcccccccchhccccccCCCCChHhhh
Q 008182           99 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIA-LYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  177 (575)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  177 (575)
                      .++.+++..+.+++.+                        ...+++. +++.+++ +...|....+..|..++++     
T Consensus        89 ~~~~~~~~~~~~~~~~------------------------~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----  138 (393)
T PRK15011         89 CLLGVLACTLFAWNRN------------------------YFVLLFVGVFLSSFG-STANPQMFALAREHADKTG-----  138 (393)
T ss_pred             HHHHHHHHHHHHHhhH------------------------HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc-----
Confidence            5555566666666532                        4444444 4444444 4556777777777665544     


Q ss_pred             hh--hhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          178 QM--AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       178 ~r--~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                       |  +...++.+.+.++|..++|.+++++.+..|||..|++.++..++..+..+...|
T Consensus       139 -~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        139 -REAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcC
Confidence             4  344577888899999999999999998899999999888766655555444333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.89  E-value=6.5e-21  Score=203.35  Aligned_cols=393  Identities=11%  Similarity=0.036  Sum_probs=227.7

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .+.+|.+.+..++..++++...++++.|+.+++|++..+.+.+.+.+.+...+++++.|+++||+ ||||+++++..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~   87 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL   87 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            35677777888888888888899999999999999999999999999999999999999999999 99999988766655


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++..........+.                    .......+..+.++..+...+...+.+.++.++..+    +++..+
T Consensus        88 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~  143 (420)
T PRK09528         88 VLFGPFFIYVFAPL--------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEY  143 (420)
T ss_pred             HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccc
Confidence            54432211100000                    000011122222222222222223333333321111    167778


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccC
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDL  263 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (575)
                      +......++|..++|.+++++.+ .+|+.+|++.++..++.++..+..+++.++++...+. .                 
T Consensus       144 g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------  204 (420)
T PRK09528        144 GRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA-L-----------------  204 (420)
T ss_pred             hhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc-h-----------------
Confidence            88888889999999999999976 5899999988877666665555443321111000000 0                 


Q ss_pred             CCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHH-HHHHHhhhc
Q 008182          264 PCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATT-IIFWTTYAQ  342 (575)
Q Consensus       264 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~  342 (575)
                       +            .   .++...+-+.....                      ++ +.+.......... ..+.....+
T Consensus       205 -~------------~---~~~~~~~~~~~~~l----------------------~~-~~~~~l~l~~~~~~~~~~~~~~~  245 (420)
T PRK09528        205 -G------------A---NASAVSLKDALALL----------------------KL-PKFWFLVLYVIGVACFYDVFDQQ  245 (420)
T ss_pred             -h------------c---ccccccHHHHHHHc----------------------cC-CCeEeehHHHHHHHHHHHHHHHH
Confidence             0            0   00000000000000                      00 1111111111111 112222222


Q ss_pred             ccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 008182          343 MITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAAL  422 (575)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  422 (575)
                      .+..+....  .+....  ....+.+..++.+...+..++.+++.+|+.+|          +.+..+.++.+++++.+++
T Consensus       246 ~~~~~~~~~--~~~~~~--~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~~~~~~~l~~~~~~l~~~  311 (420)
T PRK09528        246 FPNFFASFF--ATPEQG--TRVFGYLNSFQVFLEALIMFFAPFIINRIGAK----------NALLLAGTIMAVRIIGSGF  311 (420)
T ss_pred             HHHHHHHHH--hccCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------hhhHHHHHHHHHHHHHHHh
Confidence            222221110  010100  00112334444555555566666665444433          2256666666776666654


Q ss_pred             HHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH-HHHHHHHHHHHHHHHH
Q 008182          423 VERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLV  501 (575)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~l~  501 (575)
                      .                   .++++++...++.+++.....+....++.+..|++.+++..++ +++...+|..+++.+.
T Consensus       312 ~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~  372 (420)
T PRK09528        312 A-------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLA  372 (420)
T ss_pred             c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHH
Confidence            3                   2344566667788888888888888899999999999988765 6777889999999999


Q ss_pred             HhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhh
Q 008182          502 AVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  548 (575)
Q Consensus       502 ~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  548 (575)
                      |.+.+..+                .+..|...+++.++..++.+...
T Consensus       373 G~l~~~~G----------------~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        373 GNLYDSIG----------------FQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHhhC----------------chHHHHHHHHHHHHHHHHHHHHh
Confidence            98875331                25567777777766665554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.89  E-value=9.9e-21  Score=199.26  Aligned_cols=159  Identities=13%  Similarity=0.177  Sum_probs=139.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +.|.++.+++..++..++...+.+.+|.|+. ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++.++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~   81 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIF   81 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHH
Confidence            3567888899999999998888899998887 6799999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +++..++++++                        +...++++|++.|++.+...+...+.+.+..++++      |++.
T Consensus        82 ~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~  131 (381)
T PRK03633         82 AAGCAGLGLMV------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRL  131 (381)
T ss_pred             HHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence            99988888763                        36778899999999999888887777788888777      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVG  213 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~  213 (575)
                      ++++..+.++|..+||.+++.+.+...+...
T Consensus       132 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~  162 (381)
T PRK03633        132 LAAYMMVYYLGTVLGQLLVSKVSTELMSVLP  162 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence            9999999999999999999998775433333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.89  E-value=2.7e-20  Score=203.22  Aligned_cols=182  Identities=15%  Similarity=0.117  Sum_probs=135.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhh----cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVG----TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      +.+....+..++..+....+....+..-.+    +.+.+..+.+++.+.+.++..++++++|+++||+ |||+++.++++
T Consensus        16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~   94 (502)
T TIGR00887        16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELI   94 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHH
Confidence            344444444455544443333333332221    1345566788999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ++.++.++++++.+.                  ....+...++++|+++|++.|...+....+++|.+|+++      |+
T Consensus        95 ~~~v~~~~~~~~~~~------------------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg  150 (502)
T TIGR00887        95 IMIIATVASGLSPGS------------------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RG  150 (502)
T ss_pred             HHHHHHHHHHHccCc------------------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HH
Confidence            999998888775220                  011235679999999999999999999999999999999      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcc-----------------------cccchhHHHHHHHHHHHHHHHHHhc
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQD-----------------------EISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~-----------------------~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++.++.+....+|..+++.+...+..                       ..+||++|.+.++..++..+..++.
T Consensus       151 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l  224 (502)
T TIGR00887       151 AMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI  224 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999887765421                       1379999987776655554444333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.89  E-value=5e-21  Score=208.56  Aligned_cols=169  Identities=17%  Similarity=0.199  Sum_probs=145.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      +.+++.+..+.+..++..+..+.... +.+++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITL-VLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            34566777777777777776665544 44566788999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +.+++.++++++.                        +...+++.|++.|++.+...+...+++.|.+++++      |+
T Consensus        94 ~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~  143 (496)
T PRK03893         94 LFSVGTLACGFAP------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RN  143 (496)
T ss_pred             HHHHHHHHHHHHh------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HH
Confidence            9999998888763                        36778999999999999989999999999999888      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHH
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAM  221 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~  221 (575)
                      +++++.....++|..++|.+.+++.+..+|++.|++..+..
T Consensus       144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~  184 (496)
T PRK03893        144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI  184 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998754433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=3.7e-20  Score=197.01  Aligned_cols=148  Identities=15%  Similarity=0.132  Sum_probs=130.8

Q ss_pred             hhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccc
Q 008182           52 LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC  131 (575)
Q Consensus        52 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  131 (575)
                      +.+++|.+..+.++..+++.+++.+++++.|+++||+ |||++++.+..+..++.+++++++                  
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------  102 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------  102 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence            5678999999999999999999999999999999999 999999999999999998888763                  


Q ss_pred             cCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccch
Q 008182          132 EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRS  211 (575)
Q Consensus       132 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~  211 (575)
                            +...++++|+++|++.+...+.....+.|.+++++      |++.+++.....++|..++|.+++.+.+..+||
T Consensus       103 ------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403        103 ------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence                  37778999999999988766666778899999888      899999999999999999999999998888999


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q 008182          212 VGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       212 ~~f~~~~~~~~~~~~~~~~  230 (575)
                      +.|++.++..+++.+..++
T Consensus       171 ~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999988776666555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.88  E-value=4.3e-20  Score=197.88  Aligned_cols=173  Identities=14%  Similarity=0.049  Sum_probs=127.8

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHH-HHH-----HHHHHHHHHHHHHHhhcccchHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIV-TDF-----MGTSFLLCLLGGFLADTFLGRYKTIA   96 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~-~~~-----~~~~~~~~~~~G~laDr~~Gr~~~~~   96 (575)
                      +++.....++..+++.+....+ ....+.+.++++.++.+.+... +..     .+...+++++.|+++||+ ||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            4455555566666666555544 5556678889998887765443 222     222246789999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      .+.+++.++.++++++++...+.                ......++++|+++|++.+...+....+++|++|+++    
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~----  150 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIG----------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR----  150 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHH----------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc----
Confidence            99999999999998874321100                0001246889999999999999988999999999999    


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhh--------cccccchhHHHHHHH
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYI--------QDEISRSVGYGICSV  219 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l--------~~~~~~~~~f~~~~~  219 (575)
                        |++.+++.....++|..+++.+++.+        .+..|||++|++..+
T Consensus       151 --rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        151 --KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence              99999998888888888877777665        246799999987543

>TIGR00898 2A0119 cation transport protein

Probab=99.88  E-value=8e-21  Score=207.51  Aligned_cols=148  Identities=20%  Similarity=0.241  Sum_probs=129.6

Q ss_pred             HHhhhcCCCC---chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           50 TYLVGTMHLP---SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        50 ~yl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      +.+.++++++   ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.++++             
T Consensus       113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------  178 (505)
T TIGR00898       113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------  178 (505)
T ss_pred             ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc-------------
Confidence            4567789999   89999999999999999999999999998 999999999999999988888773             


Q ss_pred             CcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                                 +...+++.|++.|++.+...+....++.|.+|+++      |+...++...+..+|..+++.++..+.+
T Consensus       179 -----------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~  241 (505)
T TIGR00898       179 -----------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD  241 (505)
T ss_pred             -----------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                       37779999999999999999999999999999988      9999999888899999999988776654


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhc
Q 008182          207 EISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       207 ~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                         ||+.|++.++..++..+..++.
T Consensus       242 ---wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       242 ---WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhc
Confidence               9999998887766665555443

>PRK11043 putative transporter; Provisional

Probab=99.88  E-value=3.6e-20  Score=196.22  Aligned_cols=162  Identities=14%  Similarity=0.195  Sum_probs=134.9

Q ss_pred             HHHHhhHHHHHHH--hhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008182           39 LSTMGIAVNLVTY--LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLR  116 (575)
Q Consensus        39 ~~~~~~~~~l~~y--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~  116 (575)
                      ++++....++|.+  +.+++|.+..+.+++.+++.++..++++++|+++||+ |||+++.++..+..++.+++.++.   
T Consensus        17 ~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~---   92 (401)
T PRK11043         17 LGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE---   92 (401)
T ss_pred             HHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc---
Confidence            3333444444433  6778999999999999999999999999999999999 999999999998888888887762   


Q ss_pred             ccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHH
Q 008182          117 QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLM  196 (575)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l  196 (575)
                                           +...+++.|+++|++.+...+...+++.|.+++++      +++.++......++|..+
T Consensus        93 ---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  145 (401)
T PRK11043         93 ---------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPAL  145 (401)
T ss_pred             ---------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHH
Confidence                                 36678899999999988777777888999999877      888888888888999999


Q ss_pred             HHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          197 AVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       197 ~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +|.+++++.+..+|++.|++.++..++..+..+..
T Consensus       146 g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        146 APLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998999999998877666655554443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.88  E-value=7.9e-20  Score=192.50  Aligned_cols=365  Identities=11%  Similarity=0.016  Sum_probs=223.8

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT-LG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~-~~  105 (575)
                      .+.+.+..++...++....+++|.|++ ++|++..+.+++.+.+.+...+++++.|.++||+ ||++.....+.+.. +.
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~   83 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF   83 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence            344555566666666666788999986 6899999999999999999999999999999998 98543322211111 11


Q ss_pred             HH-HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          106 TG-MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       106 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      .+ ++..+                        .+.+.+++.|.+++.+.+...|...++..+.  +++      |++.++
T Consensus        84 ~~~~~~~~------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g  131 (382)
T TIGR00902        84 AAAFSAGA------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYG  131 (382)
T ss_pred             HHHHHHhh------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCcc
Confidence            11 22222                        2367788889999988888888888876543  344      889999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCC
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLP  264 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (575)
                      ......++|..++|.+++++.+.+||+..|++..+...+.++ .....++.++++++ ++ .                  
T Consensus       132 ~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~------------------  190 (382)
T TIGR00902       132 KVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFMLI-GFLIKPTIPPKDAI-PE-D------------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHcCCCCCCCccc-cc-c------------------
Confidence            999999999999999999999999999999876554332222 22222211100000 00 0                  


Q ss_pred             CCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008182          265 CNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI  344 (575)
Q Consensus       265 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  344 (575)
                                   +   ..+..++.                         +-.++++.+...+..++....+...+... 
T Consensus       191 -------------~---~~~~~~~~-------------------------~~l~~~~~~~~l~~~~l~~~~~~~~~~~~-  228 (382)
T TIGR00902       191 -------------E---SQGDSAFI-------------------------ALLKNPMNLRFLAAVCLIQGAHAAYYGFS-  228 (382)
T ss_pred             -------------c---cccchhHH-------------------------HHHcChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                         0   00000000                         00111121111111222222222222211 


Q ss_pred             chhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008182          345 TFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVE  424 (575)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  424 (575)
                      ..+.. ..+.+..      ..+....+..+..++...+.    .++.+|      .+..+.+..+.++.++.++.++.. 
T Consensus       229 ~~~l~-~~g~s~~------~~g~l~~~~~~~~i~~~~~~----~~l~~r------~g~~~~l~~~~~~~~~~~~~~~~~-  290 (382)
T TIGR00902       229 AIYWQ-AAGISAS------ATGLLWGIGVLAEIIIFAFS----NKLFQN------CSARDLLLISAIACVGRWAIIGAI-  290 (382)
T ss_pred             HHHHH-HCCCCHh------HHHHHHHHHHHHHHHHHHHh----HHHHhh------CCHHHHHHHHHHHHHHHHHHHHhH-
Confidence            11211 1111111      11222233333333333333    333444      345555778888888888777653 


Q ss_pred             HHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHh
Q 008182          425 RKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAV  503 (575)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~  503 (575)
                                        .+++.++...++.++..++..+....++.+. |++.|++++++++ +..++|..+++.+.|.
T Consensus       291 ------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~  351 (382)
T TIGR00902       291 ------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF  351 (382)
T ss_pred             ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              2344566778999999999999999999988 9999999999987 4678999999999999


Q ss_pred             hhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHH
Q 008182          504 VKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLV  542 (575)
Q Consensus       504 v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~  542 (575)
                      +.+..+                 ...|+..+++++++.+
T Consensus       352 l~~~~g-----------------~~~~~~~~~~~~~~~~  373 (382)
T TIGR00902       352 IYPTLG-----------------AGTFVFMAIIAAAAFF  373 (382)
T ss_pred             HHHhcc-----------------HHHHHHHHHHHHHHHH
Confidence            875432                 2446777777765543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=6.7e-21  Score=198.82  Aligned_cols=155  Identities=14%  Similarity=0.046  Sum_probs=135.1

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      ....+++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.++++++.            
T Consensus        15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------   81 (379)
T TIGR00881        15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------   81 (379)
T ss_pred             hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence            3345578889999999999999999999999999999999999 999999999999999999888873            


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHH-HHHhhh
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV-TVLVYI  204 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~-~i~~~l  204 (575)
                                  +.+.+++.|++.|++.+...+...+++.|.+|+++      |++++++...+.++|..++| .+++.+
T Consensus        82 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~  143 (379)
T TIGR00881        82 ------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGI  143 (379)
T ss_pred             ------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHH
Confidence                        36778899999999999999999999999999888      99999999999999999999 577777


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          205 QDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       205 ~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      .+..+|++.|++.++..++..+..++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (379)
T TIGR00881       144 AELYSWHWVFIVPGIIAIIVSLICFLL  170 (379)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHhee
Confidence            777899999988777665554444433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.88  E-value=1.5e-20  Score=200.27  Aligned_cols=378  Identities=16%  Similarity=0.208  Sum_probs=250.7

Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCc
Q 008182           55 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  134 (575)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (575)
                      ++++++.|.+++.+.+..++.++++++|+++||+ |-|+++..+.++.++++++.+++....                  
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~~~------------------  127 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAASIG------------------  127 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence            5889999999999999999999999999999999 999999999999999999999986522                  


Q ss_pred             cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc-ccchhH
Q 008182          135 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE-ISRSVG  213 (575)
Q Consensus       135 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~-~~~~~~  213 (575)
                          ...+++.|+++|++.|...|+...+.+.+.|+++      |++..++.+.+..+|.+++-.++|++.+. .||+.+
T Consensus       128 ----~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si  197 (466)
T KOG2532|consen  128 ----FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI  197 (466)
T ss_pred             ----chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence                3467899999999999999999999999999999      99999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHh
Q 008182          214 YGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAA  293 (575)
Q Consensus       214 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  293 (575)
                      |++.+++.++..++++....+.+    ++++.-                                   ..+++..+++..
T Consensus       198 fY~~g~~g~i~~~~w~~~~~d~P----~~h~~i-----------------------------------s~~El~~I~~~k  238 (466)
T KOG2532|consen  198 FYVFGIVGLIWFILWFLFYSDSP----SKHPNI-----------------------------------SEKELKYIEKGK  238 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCc----ccCCCC-----------------------------------CHHHHHHHHhcc
Confidence            99999888877777666544222    111100                                   001111111110


Q ss_pred             hhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchh
Q 008182          294 IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFV  373 (575)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (575)
                      ...+.   ......||+..-.    +...+...+..+.....++....+.++++ .+..+++..      ..+.+.+++.
T Consensus       239 ~~~~~---~~~~~vP~~~i~t----s~~vwai~~~~f~~~~~~~~l~~y~PtY~-~~VL~f~v~------~~G~~salP~  304 (466)
T KOG2532|consen  239 SEAHV---KKKPPVPYKAILT----SPPVWAIWISAFGGNWGFYLLLTYLPTYL-KEVLGFDVR------ETGFLSALPF  304 (466)
T ss_pred             ccccc---CCCCCCCHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhCCChh------hhhHHHHHHH
Confidence            00000   0012456632111    01111111222222333333333333322 222233322      3566777888


Q ss_pred             HHHHHHHHHHhHHHhhhhhhccCCCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHH
Q 008182          374 SAILITLAVYDRLIMPLWKKWKGKPGFTNLQRM--AIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQ  451 (575)
Q Consensus       374 ~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  451 (575)
                      +...+...+.+.+.|++.+| .-  +.+..+++  .++....++.++.+++..                  ....++.+.
T Consensus       305 l~~~~~k~~~g~lsD~l~~~-~l--s~t~~rkifn~i~~~~~ai~l~~l~~~~------------------~~~~~~a~~  363 (466)
T KOG2532|consen  305 LAMAIVKFVAGQLSDRLTFR-IL--SETTVRKIFNTIAFGGPAVFLLVLAFTS------------------DEHRLLAVI  363 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-cC--chHhHHHHHHhHHHHHHHHHHHeeeecC------------------CCcchHHHH
Confidence            88888888888888888776 22  23444444  445555555555555541                  111122222


Q ss_pred             HHHHHHHHHHhh-hhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHH
Q 008182          452 FFLVGAGEAFIY-TGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFY  530 (575)
Q Consensus       452 ~~l~g~g~~~~~-~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f  530 (575)
                      ....+.+..... +..+.-..+.+| +.-+..+|+.+....+.++++|.+++.+.. .  +...+|          ..+|
T Consensus       364 ~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~--~t~~eW----------~~VF  429 (466)
T KOG2532|consen  364 LLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVT-D--NTREEW----------RIVF  429 (466)
T ss_pred             HHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--CCHHHH----------HHHH
Confidence            233333333333 333333333355 669999999999999999999999998763 1  123355          7889


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 008182          531 GLLAILSIINLVIYLICAV  549 (575)
Q Consensus       531 ~~~a~l~~v~~~~~~~~~~  549 (575)
                      ++.+++.++..++|.+++.
T Consensus       430 ~i~a~i~~~~~i~f~~f~s  448 (466)
T KOG2532|consen  430 LIAAGILIVGNIIFLFFGS  448 (466)
T ss_pred             HHHHHHHHHhchheeEeec
Confidence            9999999999988877753

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.88  E-value=1.2e-20  Score=202.38  Aligned_cols=159  Identities=8%  Similarity=-0.000  Sum_probs=129.3

Q ss_pred             HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           47 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        47 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      ...+++++ +|++..+.+++.+++.++..+++++.|+++||+ |||+.+.++.++.+++.+++++.++..          
T Consensus        48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~----------  115 (438)
T TIGR00712        48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT----------  115 (438)
T ss_pred             hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence            34456665 599999999999999999999999999999999 999999999988888887776542110          


Q ss_pred             CcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhh-c
Q 008182          127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI-Q  205 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l-~  205 (575)
                                .+...+++.|++.|++.+...+.....+.|++|+++      |++++++++...++|+.+++.+.+.. .
T Consensus       116 ----------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       116 ----------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             ----------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence                      135567788999999999888888899999999999      99999999999999999998777654 4


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +..+||..|++.++..++..+..++..+
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4568999999988776665544444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.4e-21  Score=199.34  Aligned_cols=180  Identities=13%  Similarity=0.161  Sum_probs=160.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      ..++.+.+++++++.++..=|.+.. .-.-.++.+|++.+..|.+.+.+.+.+.++.|+.|+++||+ .||+++.+|..+
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~i  107 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFI  107 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHH
Confidence            3345677777888888887776655 33455778999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      +.++++.++++.                        .++.+.+.|.+.|+|.+.+.|..+++++|.|++.+      |++
T Consensus       108 W~~Av~~~~fs~------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~  157 (493)
T KOG1330|consen  108 WTLAVFASGFSN------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSR  157 (493)
T ss_pred             HHHHHHHHHHHH------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhH
Confidence            999999999882                        38889999999999999999999999999999999      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcCc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .++++|+++++|.++|.++++++.+..+ ||+.|+..+++.++..++..++.+
T Consensus       158 ~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~  210 (493)
T KOG1330|consen  158 VLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR  210 (493)
T ss_pred             HHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence            9999999999999999999999988877 999999999888887777666654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=8.3e-20  Score=193.23  Aligned_cols=390  Identities=8%  Similarity=0.021  Sum_probs=231.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+|......++...++..+.++++.|+++++|++..+.+++.+++.+...+++++.|+++||+ ||||.++.+....++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            5678888889999999999999999999999999999999999999999999999999999999 999999888766655


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..........+..                .......+++++++.+++.+...+....+..|.-  ++      ++..++
T Consensus        81 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~------~~~~~g  136 (396)
T TIGR00882        81 LFAPFFIYVFGPLL----------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RN------SNFEYG  136 (396)
T ss_pred             HHHHHHHHHhhhHH----------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hh------cccccc
Confidence            44322211000100                0011334566678888888877777766665532  22      445667


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCC
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLP  264 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (575)
                      ......++|..++|.+++.+.+ .+|+.+|++.++..++..+..+...++.++++.   . .+            ..   
T Consensus       137 ~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~------------~~---  196 (396)
T TIGR00882       137 KARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT---V-AN------------AL---  196 (396)
T ss_pred             hhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh---h-hc------------cc---
Confidence            7778889999999999998866 699999998877766655444433322111000   0 00            00   


Q ss_pred             CCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008182          265 CNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI  344 (575)
Q Consensus       265 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  344 (575)
                             ++    .. +..+.++.   ...                      .++ |.+...+.........+....+..
T Consensus       197 -------~~----~~-~~~~~~~~---~~~----------------------l~~-~~~~~~~l~~~~~~~~~~~~~~~~  238 (396)
T TIGR00882       197 -------GA----NA-SAFSLKLA---LEL----------------------FRQ-RKFWMFVLYVVGVACVYDVFDQQF  238 (396)
T ss_pred             -------cc----cc-CCCCHHHH---HHH----------------------HcC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00    00 00000000   000                      011 111111111111111111111111


Q ss_pred             chhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008182          345 TFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVE  424 (575)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  424 (575)
                      ..+.... ..+....  ....+....+..+...+.....+++    .+|..      +.+.+.++.++.++++...... 
T Consensus       239 ~~y~~~~-~~~~~~~--~~~~g~~~~~~~i~~~~~~~~~g~l----~~r~g------~~~~l~~~~~l~~l~~~~~~~~-  304 (396)
T TIGR00882       239 ANFFTSF-FATPQQG--TRVFGYVTTMGELLNALIMFCAPLI----INRIG------AKNALLIAGTIMSVRIIGSSFA-  304 (396)
T ss_pred             HHHHHHh-ccccccc--hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc------cchhHHHHHHHHHHHHHHHHhc-
Confidence            1121111 0000000  0011223333444444444444444    34322      2223566666666666554432 


Q ss_pred             HHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH-HHHHHHHHHHHHHHHHHh
Q 008182          425 RKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFLVAV  503 (575)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~l~~~  503 (575)
                                        .+.+++++..++.+++..........+..+..|++.+++..+. ++....+|+.+++.+.|.
T Consensus       305 ------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~  366 (396)
T TIGR00882       305 ------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN  366 (396)
T ss_pred             ------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence                              3444556667788888777777777788888899999887766 678889999999999998


Q ss_pred             hhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHH
Q 008182          504 VKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYL  545 (575)
Q Consensus       504 v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~  545 (575)
                      +.+..                +++..|.+.+++.++..++..
T Consensus       367 l~~~~----------------G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       367 MYDSI----------------GFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence            86532                135667777777766665543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.4e-19  Score=189.72  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=136.9

Q ss_pred             hhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008182           43 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  122 (575)
Q Consensus        43 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  122 (575)
                      ...+.++.+.+ ++|++..+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..++.+++         
T Consensus         9 ~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------   77 (377)
T PRK11102          9 MYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------   77 (377)
T ss_pred             HHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc---------
Confidence            34566776665 6899999999999999999999999999999999 999999999999999988888762         


Q ss_pred             CCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                                     +...+++.|++.|++.+...+...+++.|.+++++      |++.+++.+...++|..++|.+++
T Consensus        78 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~  136 (377)
T PRK11102         78 ---------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGG  136 (377)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           36678899999999999988999999999999888      999999999999999999999999


Q ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          203 YIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       203 ~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++.+..+|++.|++.++..++..+...+.
T Consensus       137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102        137 WLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            99998899999998777666655444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=2e-19  Score=189.98  Aligned_cols=173  Identities=13%  Similarity=0.073  Sum_probs=143.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .+-+..+..+....+.....+.+|.+ .+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+.++++.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~   81 (392)
T PRK10473          4 FLLCSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIA   81 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHH
Confidence            34445555556666666555555554 567999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+++..++                        +...++++|+++|++.+...+...+++.|.+++++      |++..++
T Consensus        82 ~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~  131 (392)
T PRK10473         82 SLLCSLAE------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSL  131 (392)
T ss_pred             HHHHHHhC------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHH
Confidence            88887662                        25668889999999999888889999999999888      9999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      .+...++|..++|.+++.+.+..+|++.|++.++..++..+....
T Consensus       132 ~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~  176 (392)
T PRK10473        132 LNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF  176 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888889999999887766655554433

>TIGR00889 2A0110 nucleoside transporter

Probab=99.87  E-value=2.3e-19  Score=191.10  Aligned_cols=387  Identities=14%  Similarity=0.070  Sum_probs=224.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHHH
Q 008182           29 LVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR-YKTIAIFAAVQTLGTG  107 (575)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~~~~~  107 (575)
                      .+.+..++..+++-...++++.|+.+++|++..+.|++.+.+.++..+++++.|.++||+ || |+++.++.+..+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            355566666677767779999999999999999999999999999999999999999998 65 7788888877777777


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccC--------CCCChHhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQF--------DEKDEKEKTQM  179 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~--------~~~~~~~~~~r  179 (575)
                      +..+.++                        ...+++.|++.+++.+...+...++..+..        .+..      |
T Consensus        85 ~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~  134 (418)
T TIGR00889        85 FAAQVTT------------------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------P  134 (418)
T ss_pred             HHHHhcC------------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------C
Confidence            7666522                        555677788888877666665555432222        1112      4


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCC-CchhHHHHHHHHHHHh
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSG-SPIVHIFQVIVAAIKK  258 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  258 (575)
                      .+.+|      .+|.+++|.+++.+.....|. +|++.+++.++..+..+ ..++.+++++++ .+..+           
T Consensus       135 ~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~-----------  195 (418)
T TIGR00889       135 IRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVAKSTAKMSIKV-----------  195 (418)
T ss_pred             eeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCCccccccCHHH-----------
Confidence            44443      578899999998884433343 46665555554444332 223211110000 00000           


Q ss_pred             ccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 008182          259 RKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWT  338 (575)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  338 (575)
                                                . ...+.....                      ++.+.....+..++.......
T Consensus       196 --------------------------~-~~~~~~~~~----------------------k~~~~~~~~~~~~~~~~~~~~  226 (418)
T TIGR00889       196 --------------------------M-LGLDAFILF----------------------KNKRMAIFFFFSMLLGAPLQI  226 (418)
T ss_pred             --------------------------H-hhhhHHHHh----------------------cCCCeeeHHHHHHHHHhHHHH
Confidence                                      0 000000000                      000101111111111111111


Q ss_pred             hhhcccchhhhhhcccccccc-ccc-ccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHH
Q 008182          339 TYAQMITFSVEQATTMERSIG-RFQ-IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG  416 (575)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~  416 (575)
                      .+ .....+..+ ...+.... ++. ...+....+..+..++...+.+++.+|+.          +.+.+..+.++.+++
T Consensus       227 ~~-~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g----------~r~~l~~~~~~~~v~  294 (418)
T TIGR00889       227 TN-IFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG----------IKKVMLLSLVAWALR  294 (418)
T ss_pred             HH-HhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHHHHH
Confidence            11 111111111 01010000 000 01122334444444455555555543333          233467777777777


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHH-HHHHHHHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL-TTLSLGFF  495 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~  495 (575)
                      ++.+.....               ...+...+++..++.+++++...+....++.+.+|++.||+++|+.+ ...++|..
T Consensus       295 ~~l~~~~~~---------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~  359 (418)
T TIGR00889       295 FGFFAYGDP---------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL  359 (418)
T ss_pred             HHHHHHcCc---------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence            666554210               01122345567888999999988999999999999999999999997 56789999


Q ss_pred             HHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          496 VSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  551 (575)
Q Consensus       496 lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~  551 (575)
                      +|+.+.|.+.+..+..+..+          ++..|.+.+++.++..+.++++.++.
T Consensus       360 iGp~l~G~l~~~~g~~~~~~----------~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       360 LGYILSGVMVEKMFAYGTFD----------WQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHhccccCCc----------hHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999886543211112          25667778888777777777776643

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.1e-19  Score=184.23  Aligned_cols=393  Identities=16%  Similarity=0.065  Sum_probs=264.8

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           20 KTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      ++.++|.+++-.+ .+..++....+...+.+++++++|+|+.|.+++..+..+...+.+++-|.+.||+ |.|++..++.
T Consensus         9 k~~~~~~L~~S~~-af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~   86 (417)
T COG2223           9 KRIARRNLWLSTL-AFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM   86 (417)
T ss_pred             ccchhHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence            3455666664443 4444444455667788899999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      ++..+-.+..+++.+.|+                     .+.+++.+++.|++-+ ..+...+.++.+||+++      +
T Consensus        87 ~l~~IP~~~~~~a~~~~~---------------------~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~------q  138 (417)
T COG2223          87 LLLLIPCLGLAFAVTYPS---------------------TWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEK------Q  138 (417)
T ss_pred             HHHHHHHHHHHHHccCCc---------------------hHHHHHHHHHHhcccc-eehcccccccccCChhh------h
Confidence            999999999999866443                     5678888999999855 45777888999999999      9


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhccccc---chhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHH
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQDEIS---RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAI  256 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (575)
                      |.++|++. ..|+|..+...+++++....+   |+.+-.+..+..+++.+..++..+..++.++..++...         
T Consensus       139 G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~---------  208 (417)
T COG2223         139 GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP---------  208 (417)
T ss_pred             hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------
Confidence            99999999 999999999999999999888   99888888877777666666655543332221111110         


Q ss_pred             HhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHH
Q 008182          257 KKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIF  336 (575)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  336 (575)
                                                         .                    +.+.+...+....+..+...+..-
T Consensus       209 -----------------------------------~--------------------~~~~v~~~~~~W~lsllY~~tFG~  233 (417)
T COG2223         209 -----------------------------------A--------------------QLKAVFSNKDTWLLSLLYFATFGG  233 (417)
T ss_pred             -----------------------------------h--------------------HHHHHhcCcchHHHHHHHHHHHHH
Confidence                                               0                    000111111122222222223332


Q ss_pred             HHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHH
Q 008182          337 WTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG  416 (575)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~  416 (575)
                      ++.+......+...  +...+    ....+.+....++...+.-|+.+++.||+..+          +...+....++++
T Consensus       234 Fvgfs~~l~~~~~~--~fg~~----~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~----------rv~~~~f~~~~~~  297 (417)
T COG2223         234 FVGFSAYLPMYLVT--QFGLS----PVTAGLIAFLFPLIGALARPLGGWLSDRIGGR----------RVTLAVFVGMALA  297 (417)
T ss_pred             HHHHHHHHHHHHHH--hcCCC----hhhHHHHHHHHHHHHHHHHhccchhhhhccch----------hHHHHHHHHHHHH
Confidence            22222211112111  11111    22233556666777777778888876666554          2255666666666


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV  496 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  496 (575)
                      ...........            +...+....+..++.+++..++-+-..+.++....|+ +.|.+.|+......+|++.
T Consensus       298 ~~~l~~~~~~~------------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~  364 (417)
T COG2223         298 AALLSLFLTGF------------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF  364 (417)
T ss_pred             HHHHHcccccc------------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence            66665542110            0012333334445555566666666777777777765 6889999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          497 SSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  551 (575)
Q Consensus       497 g~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~  551 (575)
                      -|...+...+..+               .....|+++..+.+++.+..+....|.
T Consensus       365 lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         365 LPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             hhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999988766443               135668888888888888887776654

>PRK10133 L-fucose transporter; Provisional

Probab=99.86  E-value=4.3e-19  Score=190.14  Aligned_cols=154  Identities=18%  Similarity=0.202  Sum_probs=122.6

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +...+..+.++.+.-.+....... +.+.+++++|++..+.+++.+.+.+++.+++++.|+++||+ ||||++.+++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~-~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDI-LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            344555555555555555544444 44456889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +++.+++..+...                     .++..++++|+++|+|.|...+..++++.|..++++      |...
T Consensus       102 ~~~~~l~~~~~~a---------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~  154 (438)
T PRK10133        102 ALGAALFWPAAEI---------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFR  154 (438)
T ss_pred             HHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHH
Confidence            9999876432111                     237789999999999999999999999998765555      6667


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                      ++.......+|..+++.+++.+.
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999998876543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=1.4e-19  Score=191.66  Aligned_cols=179  Identities=13%  Similarity=0.018  Sum_probs=131.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |.++...+..+.....++. ...+.+.+.+ ++|++.+|.+++.+++.+++.+++++.|++.||+ |.|+++.++.++.+
T Consensus        34 r~l~~s~~~f~~~F~~w~~-~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~  111 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWML-FSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence            5555544444444444443 3444555544 8999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      +.+++.+++.+.+.                   .++..+++.|++.|++ +...+.....++++||+++      |++++
T Consensus       112 i~~~~~~~a~~~~~-------------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~  165 (462)
T PRK15034        112 IPCVWLGIAVQNPN-------------------TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSAL  165 (462)
T ss_pred             HHHHHHHHHHcccC-------------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHH
Confidence            98888887511000                   2377899999999998 6677888899999999999      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhc-----c-------------cccchhHHHHHHHHHHHHHHHHHhc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQ-----D-------------EISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~-----~-------------~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++.....|+|..+++++.+.+.     .             ..+|+.++++..+..+++.+..++.
T Consensus       166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9987777777776655554432     2             2346666666666555555554444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=6e-19  Score=191.07  Aligned_cols=360  Identities=14%  Similarity=0.155  Sum_probs=238.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+..+.+..+..+++......-++-++. ++.-|+...+++..+..+-..+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            45556667777777777666666666655 4567889999999999999999999999999999 999999999888877


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ..+++++......                   .+.+.+++.-++.|++.+...|+..+++.+..|+++      ..++.+
T Consensus        88 ~~~~L~~l~~~~~-------------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~a  142 (524)
T PF05977_consen   88 VALLLAVLAFFGL-------------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANA  142 (524)
T ss_pred             HHHHHHHHHHhCc-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHH
Confidence            6655554432222                   246778888899999999999999999999999988      899999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCC
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLP  264 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (575)
                      +.....|+...+||.++|.+....|-.++|.+.++..++.+..+...+++.+   +++.+.++..+.+...++.      
T Consensus       143 l~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~ry------  213 (524)
T PF05977_consen  143 LNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLRY------  213 (524)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHHH------
Confidence            9999999999999999999998889999999998887776655554443221   1111111111111111111      


Q ss_pred             CCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHH-HHHHHHHHHHhhhcc
Q 008182          265 CNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP-IWATTIIFWTTYAQM  343 (575)
Q Consensus       265 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~  343 (575)
                                                                          +...+.+...+. .+++..........+
T Consensus       214 ----------------------------------------------------v~~~~~l~~~l~~~~~~~l~~~a~~aLl  241 (524)
T PF05977_consen  214 ----------------------------------------------------VRSSPPLRSVLLRSFLFNLFASAVWALL  241 (524)
T ss_pred             ----------------------------------------------------HhcchHHHHHHHHHHHHHHhhhHHHHhh
Confidence                                                                000111111111 111111111111111


Q ss_pred             cchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008182          344 ITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALV  423 (575)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  423 (575)
                       ..+..+  ..+..    ....+.+....+++.++.+.+..+    +.+|      .+..+.+..+.++.+++++.+++.
T Consensus       242 -Pl~a~~--~l~~~----a~~yGll~a~~gvGai~Gal~~~~----l~~~------~~~~~lv~~~~~~~a~~~~~lal~  304 (524)
T PF05977_consen  242 -PLFARD--VLGGG----ASGYGLLLAAFGVGAILGALLLPR----LRRR------LSSRRLVLLASLLFALALLLLALS  304 (524)
T ss_pred             -hHHHHH--HhCCc----HHHHHHHHHHHHHHHHHHHHHHHH----hhcc------cCcchhhHHHHHHHHHHHHHHhcc
Confidence             111111  11111    111223334444444444333322    2222      333445667777777777777654


Q ss_pred             HHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 008182          424 ERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAV  503 (575)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~  503 (575)
                                         .+.+..++..++.|++.....+...+.+.+..|+++||+.++++.+....+..+|+++.|.
T Consensus       305 -------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~  365 (524)
T PF05977_consen  305 -------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGF  365 (524)
T ss_pred             -------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               2334456678888999999999999999999999999999999999999999999999998


Q ss_pred             hhhhc
Q 008182          504 VKKVT  508 (575)
Q Consensus       504 v~~~~  508 (575)
                      +.+..
T Consensus       366 la~~~  370 (524)
T PF05977_consen  366 LADHF  370 (524)
T ss_pred             HHHHh
Confidence            87644

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.85  E-value=5.4e-19  Score=211.73  Aligned_cols=156  Identities=13%  Similarity=0.177  Sum_probs=128.6

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      .+.+..+++..++..+...+....+..++...++.+.  ...+++.+++.+++.++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            4566666777777777766666667777766666654  3468899999999999999999999999 999999999877


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.++..++...+                     +.+.+++.|+++|++.+...+...++++|++++++      |++
T Consensus        87 ~~~~~~~~~~~~~~~---------------------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~  139 (1146)
T PRK08633         87 EVGLTLLIVLAYYLG---------------------WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSR  139 (1146)
T ss_pred             HHHHHHHHHHHHHHc---------------------cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chh
Confidence            776665555442211                     37789999999999999999999999999999988      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDE  207 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~  207 (575)
                      ++++...+.++|.++|+.+++++.+.
T Consensus       140 ~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        140 ANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.85  E-value=7.4e-19  Score=185.12  Aligned_cols=337  Identities=10%  Similarity=0.054  Sum_probs=202.4

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchH----HHHHHHHHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY----KTIAIFAAVQTLGTGML  109 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~----~~~~~~~~~~~~~~~l~  109 (575)
                      .++-.+++..+.+.+|.|++ ++|.|..+.|++.+++.+...+++++.|.++||+ ||+    +.+.+...+..  ....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHH
Confidence            45555666667788999996 5799999999999999999999999999999999 984    33322221111  1111


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      ..+                        ++.+.+++.|++.+++.+...|...++..++  +++      |++.++.....
T Consensus        89 ~~~------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~  136 (382)
T PRK11128         89 FGA------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLW  136 (382)
T ss_pred             Hhc------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHH
Confidence            111                        2367778899999999888888888777765  334      78888888888


Q ss_pred             HHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccc
Q 008182          190 ISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGM  269 (575)
Q Consensus       190 ~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (575)
                      .++|..+||.+++++.+.+||+..|++.++..++..+.. +..++.   ++++++.+                       
T Consensus       137 ~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~-----------------------  189 (382)
T PRK11128        137 GSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQ-LLRPTI---MPQGESRQ-----------------------  189 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHH-HccCCC---CCcccccc-----------------------
Confidence            999999999999999999999999988776544443332 222211   11100000                       


Q ss_pred             cccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHH-HHHHHHHHHHhhhcccchhh
Q 008182          270 LYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP-IWATTIIFWTTYAQMITFSV  348 (575)
Q Consensus       270 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~  348 (575)
                              +  .++...++                          .+..+.|.++..+. .++....+...+... ..+.
T Consensus       190 --------~--~~~~~~~~--------------------------~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~  232 (382)
T PRK11128        190 --------Q--ESAGWPAW--------------------------KALLKEPTVWRFLLCVSLLQGSHAAYYGFS-AIYW  232 (382)
T ss_pred             --------c--cccccchH--------------------------HHHHcChhHHHHHHHHHHHHHHhHhHHHHH-HHHH
Confidence                    0  00000000                          00111122222111 111111111111111 1111


Q ss_pred             hhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          349 EQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRL  428 (575)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  428 (575)
                      .+ .+.+..      ..+.+..+..+..++...+.+    ++.+|+      +..+.+..+.++.+++++.+...     
T Consensus       233 ~~-~g~s~~------~~g~~~~~~~~~~~~~~~~~g----~l~~r~------~~~~~l~~~~~~~~~~~~~~~~~-----  290 (382)
T PRK11128        233 QA-AGYSAS------TIGYLWSLGVVAEVLIFAFSN----RLFRRW------SARDLLLLSAICGVVRWGLMGST-----  290 (382)
T ss_pred             HH-CCCCHh------HHHHHHHHHHHHHHHHHHHHH----HHHHHC------CHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            11 111111      112223333333333333333    334442      33444666777777776665543     


Q ss_pred             HHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q 008182          429 SVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~v~~~  507 (575)
                                    .+.+.+++..++.++++++..+....+..+. |++.+++.+++++ ..+.+|..+|+.+.|.+.+.
T Consensus       291 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        291 --------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          2334456678888999999999999988887 5555789999886 55678889999999988753

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=7.7e-20  Score=190.80  Aligned_cols=167  Identities=15%  Similarity=0.096  Sum_probs=137.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++..++..+.....++...+.+|.++++++|++..+.+++.+.+.++..++++++|+++||+ |||++++++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456677777777777777778888789999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+++++++.                       +...+++.|+++|++.+.. +...++++|++++++      |++..++
T Consensus        81 ~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~  130 (366)
T TIGR00886        81 CLWAGLAVQ-----------------------SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGL  130 (366)
T ss_pred             HHHHHHHhh-----------------------hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHH
Confidence            988887730                       3677889999999986654 556788999999888      9999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcc----------cccchhHHHH-HHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQD----------EISRSVGYGI-CSVAMFM  223 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~----------~~~~~~~f~~-~~~~~~~  223 (575)
                      .....++|..+++.+++.+..          ..+|++.|++ .++...+
T Consensus       131 ~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  179 (366)
T TIGR00886       131 AAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLL  179 (366)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Confidence            888888888888777766654          2479999943 3444333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=5.4e-19  Score=211.47  Aligned_cols=337  Identities=11%  Similarity=0.030  Sum_probs=194.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH--HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchh
Q 008182           61 ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV--QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQ  138 (575)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (575)
                      ...++..+++.+.+.++++++|+++||+ |||+++......  ......+.++..                       .+
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-----------------------~s  107 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-----------------------NS  107 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hh
Confidence            4567788899999999999999999999 999976442222  222222222210                       13


Q ss_pred             hHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHH
Q 008182          139 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS  218 (575)
Q Consensus       139 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~  218 (575)
                      .+.++++|+++|++.+...|+..+++.|++++++      |++++++..++.++|.++||.++|++.+..+|++.|+..+
T Consensus       108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~  181 (1140)
T PRK06814        108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLM  181 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            7789999999999999999999999999999988      9999999999999999999999999999899999985554


Q ss_pred             HHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcC
Q 008182          219 VAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEG  298 (575)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  298 (575)
                      +..++++++.+...+. +..++.........+.....++                                         
T Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------  219 (1140)
T PRK06814        182 GIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITLLK-----------------------------------------  219 (1140)
T ss_pred             HHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHHHH-----------------------------------------
Confidence            4444444443333221 1111100000000000000000                                         


Q ss_pred             CcCCCCCCCCCccccchhhhhHHHHHH-HHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHH
Q 008182          299 DFEAGSTPNPWKLCSVTSVEEVKMVAR-LLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAIL  377 (575)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (575)
                                       .....+.+.. .+..++..........+++ .+..+..+.+      ....+.+.....++.+
T Consensus       220 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~------~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        220 -----------------YAKADKRIWLAILGISWFWLVGAVVLSQLP-LLAKETLGGD------ENVATLFLAVFSVGVA  275 (1140)
T ss_pred             -----------------HHhcCchHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHcCCc------hHHHHHHHHHHHHHHH
Confidence                             0001111111 1111111112212222222 1211111111      1112334455555555


Q ss_pred             HHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCCccceehhhHHHHHH
Q 008182          378 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGL---TTATLPVSVFLLIPQFFL  454 (575)
Q Consensus       378 i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~~l  454 (575)
                      +...+.+++.    ++...      .+.+..+.++.+++.+.+.+....  ........   ..-....+.+.+++..++
T Consensus       276 ig~~~~g~l~----~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (1140)
T PRK06814        276 VGSFLASKLS----EGRIT------LLYVPIGALLMGLFGLDLAFASSS--VPAEPAQLKSILVFLSKRHGWRILIDLFG  343 (1140)
T ss_pred             HHHHHHHHHh----CCcee------eeeehHHHHHHHHHHHHHHhcccc--cccccccccchhhhhcccccHHHHHHHHH
Confidence            5555555543    22111      111333333333333322221000  00000000   000001234456677888


Q ss_pred             HHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182          455 VGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  505 (575)
Q Consensus       455 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  505 (575)
                      +|++.++..+...+++.+.+|++.||+++|++++.+.+|..+++.+.+.+.
T Consensus       344 ~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        344 LAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998875

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.85  E-value=2.5e-18  Score=186.91  Aligned_cols=178  Identities=13%  Similarity=0.108  Sum_probs=140.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc----cchHHH-HHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF----LGRYKT-IAI   97 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~~-~~~   97 (575)
                      .+|..+.++.+.+...+..+.....++.++.+ .|.+.++.+...... .. .++.+++|.++||+    +||||. +++
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            45567778888888888888888888999775 599999998863322 22 26899999999995    288886 556


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhh
Q 008182           98 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  177 (575)
Q Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  177 (575)
                      +.+..+++...+++..  |.                   .+...+.+.+++.+++.+...+...++..|++|+++     
T Consensus        87 ~~i~~~~~~~~~a~~~--~~-------------------~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-----  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE--PG-------------------TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-----  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC--Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-----
Confidence            6666667766666642  11                   346778888999999989888999999999999888     


Q ss_pred             hhhhhhhhhhhhHHHhHHHHHHHHhhhcc-cccchhHHHHHHHHHHHHHHHHHh
Q 008182          178 QMAYFFSRFFFFISLGTLMAVTVLVYIQD-EISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       178 ~r~~~~~~~~~~~~ig~~l~~~i~~~l~~-~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                       |+++.++...+.++|..+++.+.+++.+ ..|||.+|++.++..++..+..++
T Consensus       141 -rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        141 -RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence             9999999999999999999999999988 469999999988776665554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.84  E-value=7.6e-19  Score=188.12  Aligned_cols=357  Identities=12%  Similarity=0.104  Sum_probs=217.4

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHH-HHHHHHHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYK-TIAIFAAVQTLGTGML  109 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~-~~~~~~~~~~~~~~l~  109 (575)
                      .+...+.+..+..+++.|+++++|+++.++|.+.++..+...+..|+.|+++||.   +|||| .++++....+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            3445566666778899999999999999999999999999999999999999983   38855 5667777777777777


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCC-CChHhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF  188 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~  188 (575)
                      ...++.+.                  ......+++.+++.+++.+.......++..|..++ ++      |++..++...
T Consensus        88 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~  143 (437)
T TIGR00792        88 FTTPDFSA------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRF  143 (437)
T ss_pred             HhCCCCCc------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHH
Confidence            65421110                  12245566777788888888777778888888754 44      8899998888


Q ss_pred             hHHHhHHHHHHHHhhhc-------ccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          189 FISLGTLMAVTVLVYIQ-------DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       189 ~~~ig~~l~~~i~~~l~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      ..++|+.+++.+.+.+.       +..+|++.+.+.+++.++..+...+..++.+++.+++++                 
T Consensus       144 ~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-----------------  206 (437)
T TIGR00792       144 GATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-----------------  206 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc-----------------
Confidence            88888877766655543       245799998887777666555544433322110000000                 


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  341 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (575)
                                            ++.+..+..                      +...+.|.+...+...+.....+....
T Consensus       207 ----------------------~~~~~~~~~----------------------~~l~~~~~~~~~~~~~~~~~~~~~~~~  242 (437)
T TIGR00792       207 ----------------------KKLSLKQIF----------------------KALFKNDQLLILCLAYLFYNLAFNIKN  242 (437)
T ss_pred             ----------------------cCCCHHHHH----------------------HHHhCCHHHHHHHHHHHHHHHHHHHHc
Confidence                                  000000000                      000111222211111111111111111


Q ss_pred             cccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008182          342 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  421 (575)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~  421 (575)
                      .....+..+  ... +    ....+.+..+..+..++..++..++.+|+.+          .+.+..+.++.+++++.+.
T Consensus       243 ~~~~~~~~~--~~~-~----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~----------~~~~~~~~~~~~~~~~~~~  305 (437)
T TIGR00792       243 GVQVYYFTY--VLG-D----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGR----------KILFAGGILLMVLGYLIFF  305 (437)
T ss_pred             chhheeEee--ecC-C----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------HHHHHHHHHHHHHHHHHHH
Confidence            111111111  011 0    0011223334455556666666665443332          2335667777677666554


Q ss_pred             HHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCC-------cchhHHHHHHHHHHHHHHH
Q 008182          422 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTLSLGF  494 (575)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg~  494 (575)
                      +.                  +.+.+..++..++.+++.+..++..+++..+..|       ++.+|++.|++++...+|.
T Consensus       306 ~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~  367 (437)
T TIGR00792       306 FA------------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ  367 (437)
T ss_pred             Hc------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence            42                  1122344556677888888888888888887765       5678999999999999999


Q ss_pred             HHHHHHHHhhhhhcCC
Q 008182          495 FVSSFLVAVVKKVTGS  510 (575)
Q Consensus       495 ~lg~~l~~~v~~~~~~  510 (575)
                      .+++.+.+.+.+..+.
T Consensus       368 ~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       368 ALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999998876543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.83  E-value=1.9e-18  Score=181.35  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=117.5

Q ss_pred             HHHHHhhhcCC--CCchhhHHHHHH-----HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008182           47 NLVTYLVGTMH--LPSATSANIVTD-----FMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  119 (575)
Q Consensus        47 ~l~~yl~~~l~--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~  119 (575)
                      ....++.++..  .++++.+.+.+.     ..+...+++++.|+++||+ ||||+++++.++..++.++++++++.+.. 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~-   91 (394)
T TIGR00883        14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI-   91 (394)
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence            45556665543  445555554443     2233346889999999999 99999999999999999988887432110 


Q ss_pred             CCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHH
Q 008182          120 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  199 (575)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  199 (575)
                                     .......+++.|+++|++.+...+...++++|.+++++      |++..++...+..+|..+++.
T Consensus        92 ---------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~  150 (394)
T TIGR00883        92 ---------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAAL  150 (394)
T ss_pred             ---------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHH
Confidence                           00012357889999999999999999999999999988      999999999999999999988


Q ss_pred             HHhhhc--------ccccchhHHHHHHHHHHHHHHH
Q 008182          200 VLVYIQ--------DEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       200 i~~~l~--------~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      ++..+.        +..+||++|++.++..+++...
T Consensus       151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            776653        3568999998877665544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00896 CynX cyanate transporter

Probab=99.83  E-value=8.9e-19  Score=182.47  Aligned_cols=333  Identities=12%  Similarity=0.147  Sum_probs=205.6

Q ss_pred             HHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008182           41 TMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP  120 (575)
Q Consensus        41 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  120 (575)
                      ++.....+.+.+.+++|++.++.+++.+.+.++..++.++.|+++||+ ||||++.++.++..++.+.. .+   +    
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~---~----   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA---P----   85 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh---c----
Confidence            333334444556779999999999999999999999999999999999 99999999988877776665 33   2    


Q ss_pred             CCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHH
Q 008182          121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV  200 (575)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i  200 (575)
                                       +...+++.|++.|++.+...+..+..+.|.++ ++      |++++++++...++|..+++.+
T Consensus        86 -----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~  141 (355)
T TIGR00896        86 -----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAA  141 (355)
T ss_pred             -----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHH
Confidence                             25667899999999999887888888888885 46      8999999999999999999999


Q ss_pred             Hhhhcccc--cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccc
Q 008182          201 LVYIQDEI--SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS  278 (575)
Q Consensus       201 ~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (575)
                      ++.+.+..  +||+.|.+.++..++....+.   ++.+++++++.+.                                 
T Consensus       142 ~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------------------------  185 (355)
T TIGR00896       142 TVPLAQHSGGHWQQALAWWALPALLALLAWI---PQVRRRVAANQTT---------------------------------  185 (355)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh---hhhccccCCCCCC---------------------------------
Confidence            98887654  389888766554433322221   1111111000000                                 


Q ss_pred             cccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccccc
Q 008182          279 RIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSI  358 (575)
Q Consensus       279 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (575)
                           +.                    ..+++.     .++.+.........+....++....+.+..+ . ..+.+.. 
T Consensus       186 -----~~--------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~-~~g~~~~-  232 (355)
T TIGR00896       186 -----TR--------------------LTPVRI-----WRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL-I-SHGASAA-  232 (355)
T ss_pred             -----CC--------------------CCCchh-----hcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HcCCCHH-
Confidence                 00                    000000     0111111111111111222222222222111 1 1111111 


Q ss_pred             ccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 008182          359 GRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTT  438 (575)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (575)
                           ..+.+.....+..++..++.+++.    +|.++     ..+.+.++.++.+++.+.+.+..              
T Consensus       233 -----~~g~~~~~~~~~~i~~~~~~g~l~----dr~~~-----~~~~~~~~~~~~~~~~~~~~~~~--------------  284 (355)
T TIGR00896       233 -----TAGSLLALMQLAQAASALLIPALA----RRVKD-----QRGIVAVLAVLQLVGLCGLLFAP--------------  284 (355)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhHHHHH----hhhcc-----chHHHHHHHHHHHHHHHHHHHhh--------------
Confidence                 123344445555555555555553    33311     11224556666666666555431              


Q ss_pred             CCccceehhhHHHHHHHHHHHHHhhhhhhheecccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008182          439 ATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS-PKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTG  509 (575)
Q Consensus       439 ~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  509 (575)
                          .+..+  ...++.|++.+..+|...+.+.+.. +++.+|..+++.+....++..+++.+.|.+.+..+
T Consensus       285 ----~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       285 ----MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             ----hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                11111  2456778999888888777766554 46778999999998889999999999999876554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.1e-17  Score=176.53  Aligned_cols=397  Identities=14%  Similarity=0.079  Sum_probs=235.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHH
Q 008182           63 SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVL  142 (575)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (575)
                      -+.+++++.+++++++.++|+++||+ |||..++++.++..++.++..++...+.                     ..++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~~---------------------~e~l  119 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAPS---------------------FEML  119 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhhh---------------------HHHH
Confidence            34678889999999999999999999 9999999999999998888888755444                     7889


Q ss_pred             HHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH-hhhc-ccccchhHHHHHHHH
Q 008182          143 YIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL-VYIQ-DEISRSVGYGICSVA  220 (575)
Q Consensus       143 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~-~~l~-~~~~~~~~f~~~~~~  220 (575)
                      +++|++.|+..|......+-++.|..|++.      ||..-....++..+|..++..++ ..+. ..-.|++.+.+..+.
T Consensus       120 i~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~  193 (485)
T KOG0569|consen  120 ILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIP  193 (485)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999      99999999999999999995554 3343 334599888888887


Q ss_pred             HHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCc
Q 008182          221 MFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDF  300 (575)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  300 (575)
                      .++.++.+.+..+.-+.--.++++.++..+.    ++.           ++..++++..++        +......+.+.
T Consensus       194 ~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~s----l~~-----------y~G~~~~~~~~e--------~~~~e~~~~~~  250 (485)
T KOG0569|consen  194 ALLQLALLPFLPESPKYLLIKKGDEEEARKA----LKF-----------YRGKEDVEAEIE--------EMLREIEEEEL  250 (485)
T ss_pred             HHHHHHHHhcCCCCcchHHHHcCCHHHHHHH----HHH-----------HhCCCcchhHHH--------HHHHHHHHhcc
Confidence            7777777666543211100111122211111    111           001000000000        00000000000


Q ss_pred             CCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhh--hhhccccccccccccc-ccccccchhHHHH
Q 008182          301 EAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSV--EQATTMERSIGRFQIP-AGSLTVFFVSAIL  377 (575)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  377 (575)
                      ...+....++..+.++  .++.....+.+        ...+|+.+...  .+....-.+. |+... ....+....+..+
T Consensus       251 ~~~~~~sl~~~~~~~~--lR~~~~i~~~v--------~~~qq~sGi~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~  319 (485)
T KOG0569|consen  251 EKKKQISLRQLLKNPT--LRRPLLIGIVV--------SFAQQFSGINAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNL  319 (485)
T ss_pred             ccccCCcHHHHhcCcc--hhHHHHHHHHH--------HHHHHhcCcceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence            0000011111111111  11111111111        11222222110  0000000000 11111 1122333333344


Q ss_pred             HHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehh--hHHHHHHH
Q 008182          378 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFL--LIPQFFLV  455 (575)
Q Consensus       378 i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~l~  455 (575)
                      +..-+...+++++.||          ..++.+..++.+..+.+.......+..           . ++.+  .+...++.
T Consensus       320 ~~t~~~~~lid~~gRR----------pLll~~~~~~~~~~~~~~~~~~l~~~~-----------~-~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  320 LSTLVSPFLIDRLGRR----------PLLLISLSLMAVALLLMSIALFLSNSF-----------G-SWLSYLCIAAIFLF  377 (485)
T ss_pred             HHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------h-hHHHHHHHHHHHHH
Confidence            4444444454444443          236667777777776666554432211           1 1211  23444444


Q ss_pred             HHHHHHh-hhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHH
Q 008182          456 GAGEAFI-YTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLA  534 (575)
Q Consensus       456 g~g~~~~-~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a  534 (575)
                      .++..+. .|..+-+.+|.+|++.|..++++....+.+++++-......+.+..+                 .++|+++.
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~  440 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFV  440 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHH
Confidence            4444444 58889999999999999999999999999999999999888765443                 36788889


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCcccc
Q 008182          535 ILSIINLVIYLICAVWYKPKKPKAGI  560 (575)
Q Consensus       535 ~l~~v~~~~~~~~~~~~~~~~~~~~~  560 (575)
                      +.+++..+..+...+++|+|+..+..
T Consensus       441 i~~~~~~i~~~~~lPETkgr~~~eI~  466 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPETKGRTPYEII  466 (485)
T ss_pred             HHHHHHHHHHHHhCcccCCCCHHHHH
Confidence            99999999899999999988866543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=2.7e-17  Score=174.67  Aligned_cols=173  Identities=14%  Similarity=0.201  Sum_probs=139.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++.++...+.-.+.. ++...+.+.+++++|++..+.+++.+.+.+++.++.++.|++.||+ |||+++.+++++++++
T Consensus         4 ~~~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g   81 (410)
T TIGR00885         4 PFALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALG   81 (410)
T ss_pred             HHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            3445555555555444 4444555666889999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .++...+...                     .++..+++.|++.|+|.|...+..++++.+..|+++      |++..++
T Consensus        82 ~~l~~~~~~~---------------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~  134 (410)
T TIGR00885        82 AFLFWPAAEI---------------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNL  134 (410)
T ss_pred             HHHHHHHHhh---------------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHH
Confidence            8876554221                     237788999999999999999999999999988887      8888999


Q ss_pred             hhhhHHHhHHHHHHHHhhhccc--------------------------ccchhHHHHHHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDE--------------------------ISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~--------------------------~~~~~~f~~~~~~~~~~~~~  227 (575)
                      .+...++|..++|.+++.+...                          .+||++|++.+++.++..+.
T Consensus       135 ~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       135 AQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998877422                          35999998877655544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.81  E-value=5.6e-17  Score=172.03  Aligned_cols=169  Identities=13%  Similarity=0.095  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc----cchHH-HHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF----LGRYK-TIAIFAAVQTL  104 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~-~~~~~~~~~~~  104 (575)
                      ++...+...+.+.-....+|.|++++ |++.++.|++......  .+..+++|+++||+    +|||| .++++.++.++
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          4 MLLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            44556666666666778899999965 9999999999776665  69999999999997    26765 67777888877


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..++++...                     ..+.+.+++..++.++..+...+...+++.|++|+++      |+++.+
T Consensus        81 ~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~  133 (402)
T PRK11902         81 SIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAA  133 (402)
T ss_pred             HHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHH
Confidence            7777666521                     1235556666667778888888999999999999988      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhccc-ccchhHHHHHHHHHHHHHHHH
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDE-ISRSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~-~~~~~~f~~~~~~~~~~~~~~  228 (575)
                      +...+.++|..+++.+++++.+. .|||..|++.++..++..+..
T Consensus       134 ~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        134 VKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888875 599999999887665554443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.80  E-value=8.7e-17  Score=175.94  Aligned_cols=400  Identities=13%  Similarity=0.118  Sum_probs=225.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHH
Q 008182           62 TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGV  141 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (575)
                      +.+++.+.+.++..++++++|+++|++ |||++++++.+++.+|.++++++.                        +..+
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~------------------------~~~~  144 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP------------------------SWYQ  144 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh------------------------hHHH
Confidence            458999999999999999999999999 999999999999999999999983                        3888


Q ss_pred             HHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc--ccchhHHHHHHH
Q 008182          142 LYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE--ISRSVGYGICSV  219 (575)
Q Consensus       142 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~--~~~~~~f~~~~~  219 (575)
                      ++++|++.|+|.|......+.+++|..|++.      |+...+..+...++|..++. +.++..+.  .+||..+++..+
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~~~~i  217 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLGLALI  217 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHHHHHH
Confidence            9999999999999999999999999999988      99999999999999999995 44554443  489988888777


Q ss_pred             HHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCC
Q 008182          220 AMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGD  299 (575)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  299 (575)
                      ..++..+.+++ .|+.++.--+.....+..+.+.....   .. +++               ...+...+...... +..
T Consensus       218 ~~~~~~~~~~~-~pesp~~L~~~g~~~~a~~~l~~l~g---~~-~~~---------------~~~~~~~~~~~~~~-~~~  276 (513)
T KOG0254|consen  218 PAVILALGMLF-LPESPRWLIEKGRLEEAKRSLKRLRG---LS-PED---------------VEVELELLKIKLLV-EAE  276 (513)
T ss_pred             HHHHHHHHHHh-CCCChHHHHHcCChHHHHHHHHHHhC---CC-Ccc---------------hHHHHHHHHHHHHH-hhh
Confidence            66665555333 33211111111112221111111111   00 000               00000000000000 000


Q ss_pred             cCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHH
Q 008182          300 FEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILIT  379 (575)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  379 (575)
                        ..+....|..+..  ...+|+....+.+..++..  ..++. ...|..+.  ....  +...+......+..+...+.
T Consensus       277 --~~~~~~~~~~l~~--~~~~~~~~i~~~l~~fqq~--tG~~~-~~~Y~~~i--f~~~--g~~~~~~~~~~~~~~v~~~~  345 (513)
T KOG0254|consen  277 --VAEGKASWGELFS--PKVRKRLIIGLLLQLFQQL--TGINY-VFYYSTTI--FKSA--GLKSDTFLASIILGVVNFLG  345 (513)
T ss_pred             --cccccccHHHhcC--cchHHHHHHHHHHHHHHHH--hCCce-EEeehHHH--HHhc--CCCCchHHHHHHHHHHHHHH
Confidence              0000001111111  1122222222222111111  11111 11111111  1111  11111112222223333333


Q ss_pred             HHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHH-HHHHHHH
Q 008182          380 LAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQ-FFLVGAG  458 (575)
Q Consensus       380 ~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~l~g~g  458 (575)
                      ..+...+++++.||          ..+..|.+.+.+++++++.......+.       .+......++.+.. .+.....
T Consensus       346 t~~~~~lvd~~gRr----------~lll~s~~~m~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~f  408 (513)
T KOG0254|consen  346 TLVATYLVDRFGRR----------KLLLFGAAGMSICLVILAVVGVFALYY-------PNSSKGAGWLAIVFLCLFIFSF  408 (513)
T ss_pred             HHHHHHHHHHhccH----------HHHHHhHHHHHHHHHHHHHHHHHhccC-------CCcccchhHHHHHHHHHHHHHH
Confidence            33334555555444          337888889999988888664321100       00001112222222 2333333


Q ss_pred             HHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHH
Q 008182          459 EAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSI  538 (575)
Q Consensus       459 ~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~  538 (575)
                      .....|..+.+..|.+|.+.|+++.++....+.+.+.+-...........+                ....|...++.+.
T Consensus       409 ~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~----------------~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  409 AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG----------------IGGTFGYFGGICL  472 (513)
T ss_pred             hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------ccchHHHHHHHHH
Confidence            333447777888999999999999999999988888777666554432110                1234555666666


Q ss_pred             HHHH-HHHhhhhhcCCCCCcc
Q 008182          539 INLV-IYLICAVWYKPKKPKA  558 (575)
Q Consensus       539 v~~~-~~~~~~~~~~~~~~~~  558 (575)
                      +... ..+++.++++.++.++
T Consensus       473 ~~~~~fv~~~~pETkg~slee  493 (513)
T KOG0254|consen  473 LSLIIFVFFFVPETKGLTLEE  493 (513)
T ss_pred             HHHHHHheEEcccCCCCcHHH
Confidence            6666 6778889988887664

>TIGR00901 2A0125 AmpG-related permease

Probab=99.80  E-value=1.7e-17  Score=172.79  Aligned_cols=160  Identities=13%  Similarity=0.108  Sum_probs=120.8

Q ss_pred             HHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc----cchHHHH-HHHHHHHHHHHHHHHHHhhhcccC
Q 008182           45 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF----LGRYKTI-AIFAAVQTLGTGMLAMVTKLRQLR  119 (575)
Q Consensus        45 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~----~Gr~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  119 (575)
                      .....+.+.+++|+|.++.++.... .+...+ .++.|.++||+    +||||.+ +.+.++.++....+++...     
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            3444444555789999999999755 333334 89999999997    4899975 5666666666666655421     


Q ss_pred             CCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHH
Q 008182          120 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  199 (575)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  199 (575)
                                      ..+...+....++.+++.+...+...+++.|++|+++      |+++.++...+.++|..+++.
T Consensus        80 ----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~  137 (356)
T TIGR00901        80 ----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGS  137 (356)
T ss_pred             ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHH
Confidence                            1235556666667778888888999999999999888      999999999999999999999


Q ss_pred             HHhhhccccc--------chhHHHHHHHHHHHHHHHHHhcCc
Q 008182          200 VLVYIQDEIS--------RSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       200 i~~~l~~~~~--------~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +++++.+..+        ||.+|++.++..+++.+..++..|
T Consensus       138 l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~  179 (356)
T TIGR00901       138 LALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK  179 (356)
T ss_pred             HHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999988888        999999888876665555444333

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.79  E-value=2.6e-16  Score=167.99  Aligned_cols=438  Identities=15%  Similarity=0.137  Sum_probs=253.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc----ccchHHHHHHH-HH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADT----FLGRYKTIAIF-AA  100 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr----~~Gr~~~~~~~-~~  100 (575)
                      .++.+..+.+...+++-...+++++|+ +++|.+..+.+.+..+..+...+.+|+.|+++||    + ||||.++++ .+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~   82 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence            456677777777888777778888886 5799999999999999999999999999999995    7 999998875 55


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ...++.++++++.+...+..    +  . ............+.++..+..++.....+...++++|.+|+++++    ++
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~----~--~-~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~  151 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFG----D--N-LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TR  151 (477)
T ss_pred             HHHHHHHHHHhCchhhhhcc----c--c-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HH
Confidence            56666677766533211000    0  0 000000011133444555556677777788899999999988732    46


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhh--cccc-------------cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCch
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYI--QDEI-------------SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPI  245 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l--~~~~-------------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (575)
                      .+.++.....++|..+|+.++++.  .+.+             +.+..|++.++..++..++.++..++.+..++++.+.
T Consensus       152 ~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~  231 (477)
T TIGR01301       152 IANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN  231 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh
Confidence            789999999999999999988765  2111             5688999888877777776666555432211110000


Q ss_pred             hHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHH
Q 008182          246 VHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVAR  325 (575)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (575)
                      .                       .++  ++ +.  ......+.+.-...                 +    .--|.+.+
T Consensus       232 ~-----------------------~~~--~~-~~--~~~~~~~~~i~~~~-----------------~----~mP~~m~~  262 (477)
T TIGR01301       232 S-----------------------EAA--PP-SK--HGEEAFFGELFGAF-----------------K----YLPRPVWI  262 (477)
T ss_pred             h-----------------------hcc--cc-cc--cchhhhHHHHHHHH-----------------H----HCCHHHHH
Confidence            0                       000  00 00  00000000000000                 0    00123334


Q ss_pred             HHHHHHHHHHHHHhhhcccchhhhhhcccccccc--cc--ccccc-ccccchhHHHHHHHHHHhHHHhhhhhhccCCCCC
Q 008182          326 LLPIWATTIIFWTTYAQMITFSVEQATTMERSIG--RF--QIPAG-SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGF  400 (575)
Q Consensus       326 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~  400 (575)
                      .+...++...-|..+..+.+.+.-+..+-..+-.  .+  +...+ +....+.+...    +...+..++.+|...    
T Consensus       263 l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~----  334 (477)
T TIGR01301       263 LLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGA----  334 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc----
Confidence            4455556666666666555555433222111100  00  00001 11122222222    333344444555321    


Q ss_pred             CchhHH-HHHHHHHHHHHHHHHHHHHHHHH--HHHhhCCCCCCccce-ehhhHHHHHHHHHHHHHhhhhhhheecccCCc
Q 008182          401 TNLQRM-AIGLVLSIVGMAAAALVERKRLS--VARAVGLTTATLPVS-VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPK  476 (575)
Q Consensus       401 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~  476 (575)
                        .+.+ .++.++.+++++...+......|  ..+.++..- .++.. .+..+..+.+.|+..+..+..-++++++..|+
T Consensus       335 --~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       335 --GKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL-PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             --chhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc-CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence              1123 67777888888777665321100  000000000 00111 24566778899999999999999999999994


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          477 --GMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       477 --~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                        +.+|..+|+.|+.-.+...+.++..|.+.+..+++              ....+.+.++.++++.+..+...++
T Consensus       412 ~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       412 LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhCCC
Confidence              55699999999999999999998888765444321              1344566666666666666655554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.78  E-value=6.2e-16  Score=162.82  Aligned_cols=387  Identities=14%  Similarity=0.135  Sum_probs=220.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q 008182           29 LVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGM  108 (575)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l  108 (575)
                      .+....+...+.+-...++++.|+++ .|++..|.|.+.++..+...+.++++|+++||...+||.+.+..++.++...+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~   84 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL   84 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Confidence            34445555555555667889999995 58999999999999999999999999999999845677777776666665544


Q ss_pred             HHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhh
Q 008182          109 LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFF  188 (575)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  188 (575)
                      .....                        +.+.+++..++..+......|...++.-+...+        ++.-++....
T Consensus        85 ~~~~~------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRl  132 (400)
T PF03825_consen   85 LAFSS------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRL  132 (400)
T ss_pred             HHHhc------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchh
Confidence            44431                        245555556666777777777777776665542        4455666666


Q ss_pred             hHHHhHHHHHHH-Hhhhccccc---chhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCC
Q 008182          189 FISLGTLMAVTV-LVYIQDEIS---RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLP  264 (575)
Q Consensus       189 ~~~ig~~l~~~i-~~~l~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (575)
                      .+++|.+++... ++.+....+   ....+++.+...++.... .+..|+.+.++..+.+.++                 
T Consensus       133 wGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~~~~-----------------  194 (400)
T PF03825_consen  133 WGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKESVKK-----------------  194 (400)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCCccc-----------------
Confidence            677777776443 233322222   234455554433322222 2222322211110000000                 


Q ss_pred             CCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 008182          265 CNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMI  344 (575)
Q Consensus       265 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  344 (575)
                                           ....+...+                      .++++.+...+..++.....-. +..+.
T Consensus       195 ---------------------~~~~~~~~l----------------------lk~~~~~~Fll~~~l~~~~~~~-~~~f~  230 (400)
T PF03825_consen  195 ---------------------LLGLDALKL----------------------LKNPRFLVFLLAAFLIGISHAA-YYTFF  230 (400)
T ss_pred             ---------------------ccchHHHHH----------------------hcCccHHHHHHHHHHHHHHHHH-HHHHH
Confidence                                 000000000                      0111111111222222222222 12222


Q ss_pred             chhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 008182          345 TFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVE  424 (575)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  424 (575)
                      +.+..+......      ...+...++..+..+.+--+.+    ++.+|      .+..+.+.++.+..++-+.+++...
T Consensus       231 ~~yl~~~gg~~~------~~~g~~~~l~~~aEi~~f~~~~----~~~~r------~g~~~ll~~a~~~~~vR~~l~a~~~  294 (400)
T PF03825_consen  231 SIYLQELGGYSG------STIGILWALGVVAEIPFFFFSG----RFLKR------FGIKWLLLLALVAYAVRWLLYAYFS  294 (400)
T ss_pred             HHHHHHcccchh------hHHHHHHHHHHHHHHHHHHHHH----HHHHh------cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222221110110      1112223333333333333333    33444      4566678889999999888887651


Q ss_pred             HHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 008182          425 RKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTT-LSLGFFVSSFLVAV  503 (575)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~-~~lg~~lg~~l~~~  503 (575)
                      .              +........+....+.|+..++...+...++.+.+|++.|++++++++.. .++|..+|+.++|+
T Consensus       295 ~--------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~  360 (400)
T PF03825_consen  295 D--------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW  360 (400)
T ss_pred             C--------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            1              00111112233356799999999999999999999999999999998876 57999999999999


Q ss_pred             hhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          504 VKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       504 v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                      +.+..+..+.-.          ...+|.+.+++.++..++++++.|+
T Consensus       361 l~~~~g~~~~~~----------~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  361 LYDAFGARGMFD----------WSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHhcchhhhh----------HHHHHHHHHHHHHHHHHHHHhhccC
Confidence            987654322111          2455677777777777777777554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.76  E-value=1.9e-16  Score=165.12  Aligned_cols=157  Identities=10%  Similarity=-0.001  Sum_probs=136.7

Q ss_pred             hhHHHHHHHhhhcCCCCchh-hHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008182           43 GIAVNLVTYLVGTMHLPSAT-SANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  121 (575)
Q Consensus        43 ~~~~~l~~yl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  121 (575)
                      ...++..+|+.+++|++..| .|.+.+++..++.++.+++|+++||+ |.|+++.++.+...+..++++++++       
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S-------  114 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS-------  114 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            34566788999999999999 99999999999999999999999999 9999999999999999999999854       


Q ss_pred             CCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH
Q 008182          122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  201 (575)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~  201 (575)
                                       ...+.+.|++.|++.|... +...++..++|+++      |+++.++...+.++|.+++++++
T Consensus       115 -----------------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~  170 (511)
T TIGR00806       115 -----------------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLG  170 (511)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence                             6679999999999999998 99999999999998      99999999999999999999999


Q ss_pred             hhhcccccchhHHHH---HHHHHHHHHHHHHhcC
Q 008182          202 VYIQDEISRSVGYGI---CSVAMFMAIIIFLAGT  232 (575)
Q Consensus       202 ~~l~~~~~~~~~f~~---~~~~~~~~~~~~~~~~  232 (575)
                      +++ ..+||+.-+.+   ......+++++.++++
T Consensus       171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            995 45788876543   4444455555555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.75  E-value=2.9e-16  Score=170.16  Aligned_cols=368  Identities=12%  Similarity=0.071  Sum_probs=207.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh----cccchHH-HHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----TFLGRYK-TIAIFAAVQTL  104 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr~~-~~~~~~~~~~~  104 (575)
                      --+..+..++.+..+.++++.|+++.+|+++.++|.+..+.-+...+..|+.|+++|    |+ |||| -++++.+..++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence            334556667777777889999999999999999999999999999999999999999    66 9955 55556666667


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.+++...   |..               +.......+++..++..++.........++..|+.++.++     |.+..+
T Consensus        90 ~~~llf~~---p~~---------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~  146 (473)
T PRK10429         90 VLFLLFSA---HLF---------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVP  146 (473)
T ss_pred             HHHHHHcC---CCC---------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHH
Confidence            66555322   210               0111244455555667788888888888999998854332     889888


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcc-------cccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHH
Q 008182          185 RFFFFISLGTLMAVTVLVYIQD-------EISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIK  257 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (575)
                      +.....++|+.+++.+...+..       ..+|+....+.+++.++..+..++..|+... ++...+..           
T Consensus       147 ~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~-----------  214 (473)
T PRK10429        147 YPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYS-SDNQVSAE-----------  214 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCC-cccccccc-----------
Confidence            8777777776666555443321       1245555555555544444443333332110 00000000           


Q ss_pred             hccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHH
Q 008182          258 KRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFW  337 (575)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  337 (575)
                                               .+..++.+..                      +.....|.+...+...+......
T Consensus       215 -------------------------~~~~~~~~~~----------------------~~~~~n~~~~~ll~~~~~~~~~~  247 (473)
T PRK10429        215 -------------------------GSHLTLKDIV----------------------ALIYKNDQLSCLLGMALAYNIAS  247 (473)
T ss_pred             -------------------------ccCCCHHHHH----------------------HHHhcCHHHHHHHHHHHHHHHHH
Confidence                                     0000000000                      00001122222222222222222


Q ss_pred             HhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHH
Q 008182          338 TTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM  417 (575)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~  417 (575)
                      .........+...  ... +    ....+.+..+..+..++..++..++.+|+.+          .+.+..+.++..++.
T Consensus       248 ~~~~~~~~y~~~y--~~~-~----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk----------k~~~~~~~~~~~~~~  310 (473)
T PRK10429        248 NIINGFAIYYFTY--VIG-D----ADLFPYYLSYAGAANLVTLILFPRLVKSLSR----------RILWAGASIFPVLSC  310 (473)
T ss_pred             HHHhhheeeEEEE--ECC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHH
Confidence            2222111111111  011 0    0011123334445555666666555333322          233455555555444


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCC-------cchhHHHHHHHHHHH
Q 008182          418 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTL  490 (575)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~  490 (575)
                      +.+......              .+.+.+.+++..++.+++.+...+..+++..|..+       ++..|...|.+++.+
T Consensus       311 ~~~~~~~~~--------------~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~  376 (473)
T PRK10429        311 GVLLLMGLA--------------APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV  376 (473)
T ss_pred             HHHHHHhcc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence            443321000              01223345566777889999999888888988866       455677999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcCCC
Q 008182          491 SLGFFVSSFLVAVVKKVTGSK  511 (575)
Q Consensus       491 ~lg~~lg~~l~~~v~~~~~~~  511 (575)
                      -+|..+++.+.|.+.+..+..
T Consensus       377 K~~~al~~~i~g~~l~~~Gy~  397 (473)
T PRK10429        377 KGGSAFAAFFIGVVLGLIGYV  397 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999988776643

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=7.6e-16  Score=166.29  Aligned_cols=380  Identities=13%  Similarity=0.099  Sum_probs=217.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-----hHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-----RYKTIAIFAA  100 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~~~~~~~~  100 (575)
                      ....+....++..+. +.+...+++++++++|++.++.+...+...+...+-.+ +|.++||+ +     ||+.++++.+
T Consensus        27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~  103 (468)
T TIGR00788        27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGL  103 (468)
T ss_pred             HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHH
Confidence            344555578888888 77888899999999999999999998888888777554 99999998 7     7777777765


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +.. ...+..++.. +                    .......+.+++.+++.+....+..++..|..+ ++++   .++
T Consensus       104 l~~-~~~~~~l~~~-~--------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~  157 (468)
T TIGR00788       104 LGS-AILYGLLPGK-V--------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGP  157 (468)
T ss_pred             HHH-HHHHHhcccc-c--------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCC
Confidence            552 1222222210 1                    112333346778899989888999999999998 3311   134


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcc
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  260 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (575)
                      ...++.+.+.++|..+++.++|++.+.++|+..|++.++..++..+...+.+++.+...++.......            
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~------------  225 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEM------------  225 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchh------------
Confidence            45556666678999999999999999899999999988776666444444433210011110000000            


Q ss_pred             ccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHH-HHHh
Q 008182          261 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTII-FWTT  339 (575)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~  339 (575)
                                +.     .....+.....  +....                 ........+.+...+.+   ..+ +...
T Consensus       226 ----------~~-----~~~~~~~~~~~--~~~~~-----------------~l~~~l~~~~i~~~l~f---ifl~~~~~  268 (468)
T TIGR00788       226 ----------NM-----ALLTLGVLANV--KVQIL-----------------GLRGAIQLLEIAKPLIF---IFLSYANL  268 (468)
T ss_pred             ----------hh-----hhhhhhHHHHH--HHHHH-----------------HHHHHHhcHHHHHHHHH---HHHHHhhc
Confidence                      00     00000000000  00000                 00000001111111111   111 1111


Q ss_pred             hhcccchhhhhhccccccccccccccc---ccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHH
Q 008182          340 YAQMITFSVEQATTMERSIGRFQIPAG---SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG  416 (575)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~  416 (575)
                      .......+..+..    .   .+.++.   .+.....+..++...+.+++    .+|      .+..+.+.++.++.+++
T Consensus       269 ~~~~~~~f~~~~~----~---lG~s~~~~G~~~~~~~v~~i~g~~~~~~~----~~~------~~~r~~l~~~~~l~~~~  331 (468)
T TIGR00788       269 PGASGSVFCATTQ----C---LPGGPSFSGMSKVVGNLGSLCGVGGYDRF----LKT------FPYRLLFGVTTLLYTLS  331 (468)
T ss_pred             CCCCceeEEEEcc----c---CCCCcchhhhHHHHHHHHHHHHHHHHHHH----Hhh------CCHHHHHHHHHHHHHHH
Confidence            1111111111111    1   122222   22333333444443333332    332      45555567777777776


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV  496 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  496 (575)
                      .+........    .+..    .+ ..+.+++....++.+++.++...+...++.+..|++.+|+..++.+...++|..+
T Consensus       332 ~~~~~~l~~~----~~~~----~g-i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v  402 (468)
T TIGR00788       332 SLFDLILVKR----WNLA----FG-ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSV  402 (468)
T ss_pred             HhCceeeeec----cccc----cC-CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHH
Confidence            6443211100    0000    00 0122344556778888888889889999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcC
Q 008182          497 SSFLVAVVKKVTG  509 (575)
Q Consensus       497 g~~l~~~v~~~~~  509 (575)
                      ++.+++.+.+..+
T Consensus       403 ~~~~gg~l~~~~g  415 (468)
T TIGR00788       403 SGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHcC
Confidence            9999998876554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=3e-16  Score=156.42  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=108.8

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCccccc
Q 008182           53 VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCE  132 (575)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  132 (575)
                      .+..+-+..-+|.+-+.|.+.+++.++.+|.++||+ |||.++++|++..++...+.+.+.                   
T Consensus        60 ~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-------------------  119 (451)
T KOG2615|consen   60 GEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-------------------  119 (451)
T ss_pred             CCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            334445667889999999999999999999999999 999999999999999888888873                   


Q ss_pred             CccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          133 QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       133 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                           ++..+.++|++.|+..|.. ..+.++++|.+++++      |+.+++.+..+..+|.++||+++|++..
T Consensus       120 -----~F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  120 -----NFAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -----HHHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhhHHHh
Confidence                 3666788899999999874 677899999999998      9999999999999999999999999987

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.74  E-value=2.6e-15  Score=158.56  Aligned_cols=179  Identities=13%  Similarity=0.038  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHH--HHHHHHHHHHHHHHH-HHHhhcccchHHHHHHHHHHH-
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANI--VTDFMGTSFLLCLLG-GFLADTFLGRYKTIAIFAAVQ-  102 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-G~laDr~~Gr~~~~~~~~~~~-  102 (575)
                      ...+....+.+.+.+....+.+|.|+++ .|+|.++.|.+  .........+.+|+. ++.+||+ ||||..++...+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~-~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE-DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            4556677788888888888889999875 59999999997  466688888888887 5579998 9999976665332 


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .+....++..  .+.                  ......+.....+.++..+...+...++..|..++++      ++..
T Consensus        81 ~~~~~~~~~~--~~~------------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~  134 (390)
T TIGR02718        81 SACLASLALV--GPD------------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKG  134 (390)
T ss_pred             HHHHHHHHcC--Ccc------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHH
Confidence            2122222211  011                  0112233333444555556666666667677666665      6777


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .+....+..+|..+++.+.+++.+..||+.+|++.++..++..+..++..+
T Consensus       135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777777778999999988899999999999999988776665555544433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=99.73  E-value=1.2e-15  Score=164.13  Aligned_cols=184  Identities=10%  Similarity=0.011  Sum_probs=125.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHH-HHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKT-IAIFA   99 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~-~~~~~   99 (575)
                      ++.-+.--+..+..+..+..+..+++.|+++.+|++..++|.+..+.-+...+..|+.|+++||.   +||||- ++.+.
T Consensus         8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~   87 (444)
T PRK09669          8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA   87 (444)
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence            33333344455566666667778899999999999999999999999999999999999999993   288655 44566


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      +..++..+++...   |...               .......+++..++.+.+.........++.+|+.++.++     |
T Consensus        88 ~~~~i~~~l~f~~---p~~~---------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R  144 (444)
T PRK09669         88 IPFGVVCLLTFYT---PDFG---------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----R  144 (444)
T ss_pred             HHHHHHHHHHHhC---CCCC---------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----H
Confidence            6666665544433   2210               112345556666666766667777778899998755332     8


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhcc-------cccchhHHHHHHHHHHHHHHHHHh
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQD-------EISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ++..++.....++|+.+++.+...+..       ..+|+..+.+.+++.++..+..++
T Consensus       145 ~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        145 HSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            888888888888888877665443322       235777776666665555444433

>PRK09848 glucuronide transporter; Provisional

Probab=99.73  E-value=1.9e-15  Score=162.70  Aligned_cols=158  Identities=9%  Similarity=0.035  Sum_probs=103.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHHH-HHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTI-AIFAA  100 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~~~  100 (575)
                      +.-+.-....+..++.+....++++.|+++.+|++..++|.+.++..+...+..|+.|+++||.   +||||.. +++.+
T Consensus         8 ~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~   87 (448)
T PRK09848          8 RTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTA   87 (448)
T ss_pred             HHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHH
Confidence            3344444556667777777778899999999999999999999999999999999999999995   3777755 45544


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ...+..+++...   |.              +..........++..++.+++.+...+...++..+...+.++     |.
T Consensus        88 ~~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~  145 (448)
T PRK09848         88 PLMIFSVLVFWV---PT--------------DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RA  145 (448)
T ss_pred             HHHHHHHHHHhC---cC--------------CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HH
Confidence            444443333211   10              000001233344555667888888888778877777665432     66


Q ss_pred             hhhhhhhhh-----HHHhHHHHHHHHhhh
Q 008182          181 YFFSRFFFF-----ISLGTLMAVTVLVYI  204 (575)
Q Consensus       181 ~~~~~~~~~-----~~ig~~l~~~i~~~l  204 (575)
                      +..++..++     .+++..++|.+.+..
T Consensus       146 ~~~~~r~~~~~~~~~~~~~~~~p~i~~~~  174 (448)
T PRK09848        146 RLGAARGIAASLTFVCLAFLIGPSIKNSS  174 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            665554433     345566666665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=2.3e-15  Score=165.28  Aligned_cols=142  Identities=17%  Similarity=0.113  Sum_probs=126.5

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccC
Q 008182           54 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQ  133 (575)
Q Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  133 (575)
                      +..+.+........+++.++..+++++.|.++||+ |||+++++++++.+++.++.+++.+                   
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~-------------------  170 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN-------------------  170 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence            45667888899999999999999999999999997 9999999999999999999999843                   


Q ss_pred             ccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhH
Q 008182          134 ASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVG  213 (575)
Q Consensus       134 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~  213 (575)
                           +..+++.|++.|++.+....+...+++|.++++.      |+.+..+ ......++.+++.+++++..  +||+.
T Consensus       171 -----~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~  236 (521)
T KOG0255|consen  171 -----YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL  236 (521)
T ss_pred             -----HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence                 7889999999999999999999999999999999      9999999 77778888888888888877  89999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008182          214 YGICSVAMFMAIIIFL  229 (575)
Q Consensus       214 f~~~~~~~~~~~~~~~  229 (575)
                      +++..+...+.++.++
T Consensus       237 ~~~~~~~~~~~~~~~~  252 (521)
T KOG0255|consen  237 FWIISIPSGLFLLLWF  252 (521)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998877776655533

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=9.9e-16  Score=158.92  Aligned_cols=391  Identities=11%  Similarity=0.071  Sum_probs=227.3

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .+.+|......++-.+++-...++++.+++++.|++.++.|.+.++..+...+.+|+.|.++||+ |.||.++..+....
T Consensus         6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~   84 (412)
T PF01306_consen    6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILL   84 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHH
Confidence            44677777777777777777889999999998999999999999999999999999999999998 97776655443322


Q ss_pred             H--HHHHH-HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          104 L--GTGML-AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       104 ~--~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +  +.... .+.   |.+.                 .|   ++++.++.++..+.......+. .|.+.++..|   +.+
T Consensus        85 ~l~~pff~~v~~---pll~-----------------~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~sr---~~~  137 (412)
T PF01306_consen   85 LLFGPFFIYVFG---PLLQ-----------------SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVSR---RNG  137 (412)
T ss_dssp             HTCHHHHHHTHH---HHHH-----------------TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHHH---HHS
T ss_pred             HHHHHHHHHHHH---HHHH-----------------HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHHH---Hhc
Confidence            2  22222 222   2210                 01   3333344344444433333332 2443332221   134


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcc
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  260 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (575)
                      --+|-..+.+++|.+++..++|.+.+ .+.+..||+.....++..++.+..++..+++.+..+..               
T Consensus       138 feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~---------------  201 (412)
T PF01306_consen  138 FEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL---------------  201 (412)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS---------------
T ss_pred             CCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc---------------
Confidence            44566777899999999999999976 56678888876655555444444443221111100000               


Q ss_pred             ccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHH-HHHHHh
Q 008182          261 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATT-IIFWTT  339 (575)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  339 (575)
                                         ..+.+..+.-|..                       ++...|.++....+.... ..+...
T Consensus       202 -------------------~~~~~~~~~~~~~-----------------------~l~k~~~fw~~~l~v~g~~~~Y~vf  239 (412)
T PF01306_consen  202 -------------------GAKKDKVSLKDVL-----------------------SLFKMRNFWFFVLFVIGVAAIYDVF  239 (412)
T ss_dssp             -------------------SS------HHHHH-----------------------HHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------ccCCCCCcHHHHH-----------------------HHhcchhHHHHHHHHHHHHHHHHHH
Confidence                               0000000000000                       011122333333333333 344444


Q ss_pred             hhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHH
Q 008182          340 YAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAA  419 (575)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~  419 (575)
                      .+|++.++..+   .+..-.+ ....+..+++..+...+...+..++    .+|      +++.+.+.++..++.+-.+.
T Consensus       240 dqqf~~y~~~~---f~~~~~g-~~~~G~l~s~~v~~E~~~m~~~p~l----i~r------ig~k~~Lllag~i~~iRi~~  305 (412)
T PF01306_consen  240 DQQFPIYFASF---FQSAGQG-NQMYGYLWSVQVFLEALMMFFSPWL----INR------IGAKNLLLLAGVIMAIRIIG  305 (412)
T ss_dssp             HHHHHHHHHHT---SSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHH------H-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hcccccC-hhHHhHHHHHHHHHHHHHHHHHHHH----HHh------cChHhHHHHHHHHHHHHHHH
Confidence            44544333321   1111000 0012233333344443333333333    444      34445578888888888888


Q ss_pred             HHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHH-HHHHHHHHHHHH
Q 008182          420 AALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF-LTTLSLGFFVSS  498 (575)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~  498 (575)
                      .++.                   .+++++++.-.+.++-..+...+..-|+.+.+|++..++...+. ++..++|..+.+
T Consensus       306 ~~~~-------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s  366 (412)
T PF01306_consen  306 SGFA-------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILS  366 (412)
T ss_dssp             HHT---------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             Hhhh-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            7764                   45667888899999999999999999999999999999988885 688899999999


Q ss_pred             HHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          499 FLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       499 ~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                      .++|.+++..+                .+..|++++++.+...++..+..+
T Consensus       367 ~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  367 PLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             hhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeec
Confidence            99999876443                345678888887777776666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.72  E-value=1.2e-15  Score=163.26  Aligned_cols=359  Identities=14%  Similarity=0.136  Sum_probs=228.4

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHH-HHHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD----TFLGRYKTIA-IFAAVQTLGTGM  108 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----r~~Gr~~~~~-~~~~~~~~~~~l  108 (575)
                      .+...+.+.....++..|.++.+|+++...+.+..+..+...+..|+.|+++|    |+ ||||-.+ ++.+..+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            34555555566678999999999999999999999999999999999999999    67 9877555 566777777666


Q ss_pred             HHHHhhhc-ccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          109 LAMVTKLR-QLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       109 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      +...  .| ...               .......+.+..++..++.........++..|..+++++     |.+..++..
T Consensus        89 lf~~--~p~~~~---------------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~  146 (428)
T PF13347_consen   89 LFSP--PPAGLS---------------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRM  146 (428)
T ss_pred             hhcc--ccchhh---------------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHH
Confidence            6543  01 100               001234456666777889899889999999999886542     899999888


Q ss_pred             hhHHHhHHHHHHHHhhhcccc-------cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhcc
Q 008182          188 FFISLGTLMAVTVLVYIQDEI-------SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRK  260 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (575)
                      ....+|..+...+.+.+.+..       +|++..++.+++.++..++..+..|+.+.+.+++.+..              
T Consensus       147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~--------------  212 (428)
T PF13347_consen  147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI--------------  212 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccc--------------
Confidence            888888876666666554322       57777777776666665555555443111111000000              


Q ss_pred             ccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 008182          261 MDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY  340 (575)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  340 (575)
                                                ++.                 ..++     ...+.|.+...+...+.....+...
T Consensus       213 --------------------------~~~-----------------~~~~-----~~~~nr~~~~l~~~~~~~~~~~~~~  244 (428)
T PF13347_consen  213 --------------------------SLR-----------------DSLR-----SLFRNRPFRILLLAFFLQWLAFALM  244 (428)
T ss_pred             --------------------------ccc-----------------cchh-----hhcccchHHHHHHHHHHHHhhhhhh
Confidence                                      000                 0000     0011111221222222222222211


Q ss_pred             hcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHH
Q 008182          341 AQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAA  420 (575)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~  420 (575)
                      +....++..+  ....+     ...+.+..+..+..++..|++.++..|+.+|          +.+..+.++.+++.++.
T Consensus       245 ~~~~~y~~~~--vl~~~-----~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----------~~~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  245 NTFLPYYFTY--VLGNE-----GLISIFMLIFFVASIVGSPLWGRLSKRFGKK----------KVYIIGLLLAALGFLLL  307 (428)
T ss_pred             hhHHHHHHHH--HhcCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHccce----------eehhhhHHHHHHHHHHH
Confidence            1111111111  11111     1123334455666677777777775544333          23677888888888777


Q ss_pred             HHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCC-------cchhHHHHHHHHHHHHHH
Q 008182          421 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMSTGLFLTTLSLG  493 (575)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~~~~lg  493 (575)
                      .+..                 ..+.+++++..++.|++.+..++..+++..|..+       ++..|...|++++...++
T Consensus       308 ~~~~-----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~  370 (428)
T PF13347_consen  308 FFLG-----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG  370 (428)
T ss_pred             HHHH-----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence            6652                 1456678888999999999999999999998886       355799999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCC
Q 008182          494 FFVSSFLVAVVKKVTGSK  511 (575)
Q Consensus       494 ~~lg~~l~~~v~~~~~~~  511 (575)
                      ..+++.+.+.+.+..+..
T Consensus       371 ~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  371 QGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HHHHHHHHHHHHHHhCcC
Confidence            999999999988777654

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.71  E-value=4.6e-15  Score=165.44  Aligned_cols=205  Identities=16%  Similarity=0.192  Sum_probs=153.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      ..+|.+...+....+......++.....+.+.++++++.++.|++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            3345454444444444445556667777788899999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcc----------------cCCCCCCCcC---------cccccCcc--chhhHHHHHHHHHHHHccc
Q 008182          102 QTLGTGMLAMVTKLRQ----------------LRPRPCKETA---------THTCEQAS--GFQMGVLYIALYLIALGTG  154 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~----------------~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~l~g~g~g  154 (575)
                      +++|.++.++......                ..+..|.++.         ...|....  ...+.+++++|+++|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            9999999887631110                0011222110         00122111  1235678899999999999


Q ss_pred             ccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccc----------------------cchh
Q 008182          155 GLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI----------------------SRSV  212 (575)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~----------------------~~~~  212 (575)
                      ...+...+++.|++|+++      |+..+++++.+..+|..+|+++++++.+.+                      +|+.
T Consensus       188 ~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl  261 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI  261 (633)
T ss_pred             cchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence            999999999999999999      999999999999999999999999887532                      2777


Q ss_pred             HHHHHHHHHHHHHHHHHhcCc
Q 008182          213 GYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       213 ~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .|++.+++.++..+.+++..+
T Consensus       262 ~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       262 GFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhCcc
Confidence            788877766665554444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=1.2e-14  Score=146.84  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML  109 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~  109 (575)
                      ++..-|+..-.....+..+.+.+++.++++..|++.+..+++.++.+++++.|++.+|+ |+|+.++.++.++++|..+.
T Consensus        17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF   95 (422)
T COG0738          17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALF   95 (422)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence            33333333333445567788889999999999999999999999999999999999999 99999999999999999888


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      .=+++.                     ..+..++.+.++.+.|.+......+++++.+.++++      -..-+++.+..
T Consensus        96 ~pAa~~---------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~f  148 (422)
T COG0738          96 WPAASS---------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAF  148 (422)
T ss_pred             hhhhhh---------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHh
Confidence            755332                     348889999999999999999999999999999877      66667888889


Q ss_pred             HHHhHHHHHHHHhhhcc
Q 008182          190 ISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       190 ~~ig~~l~~~i~~~l~~  206 (575)
                      +.+|..++|.+++++..
T Consensus       149 n~lGa~~gp~~g~~lil  165 (422)
T COG0738         149 NGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            99999999999999876

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.71  E-value=8.5e-15  Score=158.65  Aligned_cols=386  Identities=14%  Similarity=0.041  Sum_probs=214.7

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      .....++..++|-+ ....|+.+...++..+..++.|.++|.+ |||..++++.++..+|.++++-+.+           
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~-----------  130 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN-----------  130 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc-----------
Confidence            44557888999854 6777999999999999999999999998 9999999999999999999998743           


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                                   ...++.+..+.|+|.|... .....++|..|.+.      |..+..+.....-+....++.++..+.
T Consensus       131 -------------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~  190 (599)
T PF06609_consen  131 -------------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFA  190 (599)
T ss_pred             -------------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence                         6669999999999977654 45566899999888      877666655544455556777777776


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhc-Cccc-cccCCCCCchhH------HHHHHHHHHHhccccCCCCccccccCCccc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAG-TKRY-RYKKSSGSPIVH------IFQVIVAAIKKRKMDLPCNVGMLYEDTPEA  277 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (575)
                      ...+|||.|++.++...++++...++ +|.. ++...++.+..+      ....++...---...++-+    +... ..
T Consensus       191 ~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~----wgG~-~~  265 (599)
T PF06609_consen  191 AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS----WGGY-PY  265 (599)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh----ccCC-CC
Confidence            66789999999888767665554333 3221 111111111111      1111111100000000000    0000 00


Q ss_pred             ccccCCcchhhhhH--HhhhhcCCcCC-C---CCCCCCccccchhhhhHHHHHHHH-HHHHHHHHHHHhhhcccchhhhh
Q 008182          278 SRIHHTEQFHFLDK--AAIVAEGDFEA-G---STPNPWKLCSVTSVEEVKMVARLL-PIWATTIIFWTTYAQMITFSVEQ  350 (575)
Q Consensus       278 ~~i~~~~~~~~~~~--~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~  350 (575)
                      ..+.+....-.+-.  ..+..-..+|. .   ..-.|++.+     +++|.+...+ ..++....+    .....+++.+
T Consensus       266 ~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf-----~~~r~~~~~lvi~fi~G~~~----~s~~~l~p~~  336 (599)
T PF06609_consen  266 YPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLF-----KDRRGFAALLVISFISGMNF----FSVNILWPQQ  336 (599)
T ss_pred             CCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHh-----ccchHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            01111111111110  11110011110 0   111333322     2223222221 222222222    2222334333


Q ss_pred             hccccccccccc-ccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          351 ATTMERSIGRFQ-IPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLS  429 (575)
Q Consensus       351 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  429 (575)
                      ..++..+-. .. ...+.......+...+.+.+...+.    ++.+     +.+..+..+.+++.+.+..++...     
T Consensus       337 ~~~vf~~d~-~~~~~~~~~s~~~~fg~~~g~~i~g~l~----~~ir-----~~Kw~li~~~~~~ta~~Gama~~~-----  401 (599)
T PF06609_consen  337 VVNVFGSDP-ISITEIGWISSPVGFGSCAGAVILGLLF----SKIR-----HIKWQLIFGSVLMTAFCGAMAAVR-----  401 (599)
T ss_pred             HhhhccCCC-cccceeehhhhhHHHHHHHHHHHHHHHH----HHcc-----chhHHHHHHHHHHHHHHHHHHHcc-----
Confidence            322221100 00 0122333344444444444444432    2211     112235566666666555554331     


Q ss_pred             HHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182          430 VARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  505 (575)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  505 (575)
                                  +-+....+...++.+++.+.........+.-..|++.-|+++|+....+.+|+.+|..+...+.
T Consensus       402 ------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  402 ------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             ------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                        1112223455677788888888788888888899999999999999999999999998886654

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=2.6e-16  Score=157.72  Aligned_cols=149  Identities=17%  Similarity=0.138  Sum_probs=135.4

Q ss_pred             hcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccC
Q 008182           54 GTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQ  133 (575)
Q Consensus        54 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  133 (575)
                      ++++-.+++.|++.+.+.+.+.+..|+.|.+.||+ |+|-.+++|++++...++++++..+                   
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s-------------------  158 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS-------------------  158 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch-------------------
Confidence            35677789999999999999999999999999998 9999999999999999999999844                   


Q ss_pred             ccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhH
Q 008182          134 ASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVG  213 (575)
Q Consensus       134 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~  213 (575)
                           +++++++|.++|+|.++...+-.++++|.||++++     |++++|+.-....+|-.+||.++|.+.+..|++.+
T Consensus       159 -----y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aP  228 (464)
T KOG3764|consen  159 -----YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAP  228 (464)
T ss_pred             -----hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCc
Confidence                 66799999999999999999999999999998774     89999999889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcC
Q 008182          214 YGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       214 f~~~~~~~~~~~~~~~~~~  232 (575)
                      |.+.+.+.++...+-++..
T Consensus       229 FlVL~~v~Lld~~L~l~vi  247 (464)
T KOG3764|consen  229 FLVLAIVLLLDGALQLLVI  247 (464)
T ss_pred             HHHHHHHHHHHHHHHHhee
Confidence            9999988877666555443

>PTZ00207 hypothetical protein; Provisional

Probab=99.69  E-value=3.4e-14  Score=154.86  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=127.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |..+...+.+..+.... |+.. .....+++++|++..+.+++.++.. ...++++++|+++||+ |||+++.++.+++.
T Consensus        27 w~~lva~~~~~~~~g~~-y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~  102 (591)
T PTZ00207         27 FALLVLGAFCSICTSFM-YAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFC  102 (591)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHH
Confidence            43444344444444332 3333 4555778899999999999987744 3446777899999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      +|.++++++.+. .+                 ..+.+.+++.|++.|+|.+...+.....+.++|| ++      |+.+.
T Consensus       103 iG~ll~ala~~~-~i-----------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~  157 (591)
T PTZ00207        103 LGTLLFALTFQE-VI-----------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVV  157 (591)
T ss_pred             HHHHHHHHHhcc-cc-----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHH
Confidence            999999986221 00                 1247788999999999998888888888899996 56      99999


Q ss_pred             hhhhhhHHHhHHH-HHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          184 SRFFFFISLGTLM-AVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       184 ~~~~~~~~ig~~l-~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      ++.....++|+++ +++..+++.  .+|+..|++.++..++..++
T Consensus       158 Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        158 AIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHH
Confidence            9999999999975 555555554  35777777766655554333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.68  E-value=3e-15  Score=152.68  Aligned_cols=398  Identities=15%  Similarity=0.110  Sum_probs=216.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccch
Q 008182           58 LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGF  137 (575)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (575)
                      +++.-.+.+..+..++..+++++.||++||+ |||+++-..++++.+++++++++...                 .+...
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~-----------------~~~~~  142 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGT-----------------TSPLG  142 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCC-----------------CCCcc
Confidence            6677788899999999999999999999999 99999999999999999977665221                 12223


Q ss_pred             hhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhh----ccc------
Q 008182          138 QMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI----QDE------  207 (575)
Q Consensus       138 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l----~~~------  207 (575)
                      -+.++...|+++|+|.|+-+|...+..+|...++.      ||...+......+.|...|.++.-.+    ...      
T Consensus       143 ~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~  216 (538)
T KOG0252|consen  143 VMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPST  216 (538)
T ss_pred             hhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCC
Confidence            46788899999999999999999999999887777      88888876666665555554443332    111      


Q ss_pred             -----ccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccC
Q 008182          208 -----ISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHH  282 (575)
Q Consensus       208 -----~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  282 (575)
                           .=||..|.+.++..++.+..-+.++...+++.-...+..+       +.++  .+.+.+.           .++.
T Consensus       217 ~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~-------a~~d--~~k~~~~-----------~~~~  276 (538)
T KOG0252|consen  217 YPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQ-------AAGD--MKKVLSV-----------DIEA  276 (538)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhh-------hhhc--ccccccc-----------ccch
Confidence                 1288777766554433333322222211221100001110       0000  0000000           0000


Q ss_pred             CcchhhhhHHhhhhcCCcCCCCCCCCC-ccccchhhh-hHHHHHHHHHHHHHHHHHHHhhh-cccchhhhhhcccccccc
Q 008182          283 TEQFHFLDKAAIVAEGDFEAGSTPNPW-KLCSVTSVE-EVKMVARLLPIWATTIIFWTTYA-QMITFSVEQATTMERSIG  359 (575)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  359 (575)
                      +++.          +..   -+.+..+ +++...... ..|.+       +.+..-|..+. -..+.-..|..-++    
T Consensus       277 ~~~~----------~~~---~~~~~~~~~~F~~~f~~~hg~~L-------lgt~~~WFllDiafy~~nL~~s~I~~----  332 (538)
T KOG0252|consen  277 ESTA----------ESD---VPPPSNSFGLFSRLFLRWHGKHL-------LGTAGTWFLLDIAFYGQNLFQSVIFS----  332 (538)
T ss_pred             hhcc----------ccC---CCCcccccchHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhccccHHHHHHH----
Confidence            0000          000   0001111 101100000 11222       22222222221 11110001100000    


Q ss_pred             cccccccc--c-----ccchhHHHHHHHHH-----HhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          360 RFQIPAGS--L-----TVFFVSAILITLAV-----YDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKR  427 (575)
Q Consensus       360 ~~~~~~~~--~-----~~~~~~~~~i~~~l-----~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  427 (575)
                      ..++.++.  .     .+........++.+     ...+++.+.||          ..-+.|++++++-++.++..-.  
T Consensus       333 ~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk----------~iq~~GF~~~~i~~~~~~~~y~--  400 (538)
T KOG0252|consen  333 AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRK----------YIQLMGFFIMTIFFFVIAGPYN--  400 (538)
T ss_pred             hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhH----------HHHHhhHHHHHHHHHHHcCCcc--
Confidence            00111111  1     11111112222222     12233333333          3367788888888777764311  


Q ss_pred             HHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          428 LSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  507 (575)
                             +     .......++...+.+.+++..-+.+...+.+|.+|.+.||+.-|++....=.|.+++........+.
T Consensus       401 -------~-----~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~  468 (538)
T KOG0252|consen  401 -------Q-----LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH  468 (538)
T ss_pred             -------c-----ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence                   0     0111112333334444555555677888889999999999999999999999999999988876542


Q ss_pred             cCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 008182          508 TGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKKPKAG  559 (575)
Q Consensus       508 ~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~  559 (575)
                      -       + |   ...+....++++++.+.+..++.+++- +.++++.++.
T Consensus       469 ~-------y-p---~~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~leei  508 (538)
T KOG0252|consen  469 N-------Y-P---PNIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSLEEI  508 (538)
T ss_pred             c-------C-C---ccccchHHHHHHHHHHHHhHheeEEee-cccccCHHHh
Confidence            2       1 1   122346778999999998888776664 7777766543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.67  E-value=3.7e-20  Score=199.21  Aligned_cols=142  Identities=20%  Similarity=0.301  Sum_probs=119.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhH
Q 008182           61 ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMG  140 (575)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (575)
                      .+.+++.+...++..++++++|+++||+ |||++++++.++..++.++.++++..                     .+..
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~---------------------~~~~  103 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY---------------------NNFW  103 (451)
T ss_pred             HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc---------------------cccc
Confidence            3567899999999999999999999999 99999999999999999999988411                     1367


Q ss_pred             HHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccc---cchhHHHHH
Q 008182          141 VLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI---SRSVGYGIC  217 (575)
Q Consensus       141 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~---~~~~~f~~~  217 (575)
                      .+.++|++.|++.|+..+....++.|..|++.      |+...++.+....+|..++..+.-.+.+..   +||..+.+.
T Consensus       104 ~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~  177 (451)
T PF00083_consen  104 MLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG  177 (451)
T ss_pred             cccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999      999999999999999988887765443333   499999887


Q ss_pred             HHHHHHHHHHHHh
Q 008182          218 SVAMFMAIIIFLA  230 (575)
Q Consensus       218 ~~~~~~~~~~~~~  230 (575)
                      ++..++.++...+
T Consensus       178 ~~~~l~~~~~~~~  190 (451)
T PF00083_consen  178 AIPSLLVLLLRFF  190 (451)
T ss_pred             ccccccccccccc
Confidence            7766554444333

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.65  E-value=9e-14  Score=138.61  Aligned_cols=353  Identities=15%  Similarity=0.209  Sum_probs=237.2

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      ..+-.-+++++|+|.+++|.+.+...+...+.+++..+++.|+ |.+|.+..++++.++|..+=...             
T Consensus        32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~-------------   97 (395)
T COG2807          32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG-------------   97 (395)
T ss_pred             hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence            4455677889999999999999999999999999999999999 99999999999999998776543             


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                                  +...++.+-.+.|.|.+......++++.+.||++       -+..+++|....++|+++++.+...+.
T Consensus        98 ------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla  158 (395)
T COG2807          98 ------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLA  158 (395)
T ss_pred             ------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHH
Confidence                        2556888889999999999999999999999976       488999999999999999999998888


Q ss_pred             ccc-cchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCc
Q 008182          206 DEI-SRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTE  284 (575)
Q Consensus       206 ~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  284 (575)
                      ++. +|+.....=+...+++++.++....|.+....+....                                       
T Consensus       159 ~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~---------------------------------------  199 (395)
T COG2807         159 QHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLV---------------------------------------  199 (395)
T ss_pred             HhhccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc---------------------------------------
Confidence            877 7999988878888888888776532211000000000                                       


Q ss_pred             chhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccccccccccc
Q 008182          285 QFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIP  364 (575)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (575)
                                         +..+.|+        +...+...+.+-+-+..+|..+.+++..+..+.  .+..      .
T Consensus       200 -------------------~~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa~------~  244 (395)
T COG2807         200 -------------------SVRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSAA------E  244 (395)
T ss_pred             -------------------ccccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCHH------H
Confidence                               0111121        111222233445666777777777776665542  2222      1


Q ss_pred             ccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccce
Q 008182          365 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  444 (575)
Q Consensus       365 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (575)
                      .+.+..+..+..+...-+...+    .+|.+     +.+........++.++++.+.+..                  .+
T Consensus       245 aG~llsl~~l~~~~~~ll~P~l----a~R~~-----n~r~~~~~~~~~~l~G~~G~~~~P------------------~~  297 (395)
T COG2807         245 AGSLLSLMQLAQLPTALLIPLL----ARRSK-----NQRPLVVLALLLMLVGLVGLLLAP------------------GQ  297 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHH----HHHhc-----ccchHHHHHHHHHHHHHHHHHHhh------------------hh
Confidence            2222233333333322222222    23322     233345666677777777666542                  22


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhhheecccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcc
Q 008182          445 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-KGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINR  523 (575)
Q Consensus       445 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~  523 (575)
                      ..+  ...+++|+|.+..+|....++..... ++..+..+|+.+....+=...||.++|++-+..+     +|       
T Consensus       298 ~~~--lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g-----sw-------  363 (395)
T COG2807         298 LPI--LWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG-----SW-------  363 (395)
T ss_pred             HHH--HHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC-----Ch-------
Confidence            111  12588999999999998888887665 4556667788888888888889999998876554     44       


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          524 GRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       524 ~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                         ...+..++...++..+.-+...|
T Consensus       364 ---~~~~~~l~~~~i~m~i~Gl~a~r  386 (395)
T COG2807         364 ---SAPLVLLALATLLMLIFGLRAGR  386 (395)
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhcch
Confidence               34455555555555554444433

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.8e-13  Score=146.56  Aligned_cols=153  Identities=15%  Similarity=0.079  Sum_probs=128.3

Q ss_pred             hhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccc
Q 008182           52 LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC  131 (575)
Q Consensus        52 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  131 (575)
                      +.+++++...+.+.+.++|+++++++.+++|.|.||+ .-.+.+....+..++-.++....                   
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------  131 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------  131 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence            3478899999999999999999999999999999999 86776666666655555444444                   


Q ss_pred             cCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhh------c
Q 008182          132 EQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI------Q  205 (575)
Q Consensus       132 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l------~  205 (575)
                           .+.+.+++.|++.|+..++..|+...+++.+|.+++      |+.-+++++.+.++|+++|.++...+      .
T Consensus       132 -----~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~  200 (495)
T KOG2533|consen  132 -----HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSG  200 (495)
T ss_pred             -----hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCC
Confidence                 247779999999999999999999999999999999      99999999999999999999988775      3


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      ...|||+.|.+.+++.++..++.++..|..
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence            346899999999988777666665555533

>PRK11462 putative transporter; Provisional

Probab=99.64  E-value=9e-14  Score=149.98  Aligned_cols=179  Identities=12%  Similarity=0.090  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHHHHH-HHHHHHH
Q 008182           29 LVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTIAI-FAAVQTL  104 (575)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~-~~~~~~~  104 (575)
                      .--+..+...+.+..+..++..|.++.+|+++..+|.+..+.-+.-.+.-|+.|+++||.   +||||-.++ +.+.+++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            344556666677777778899999999999999999999999999999999999999973   498876654 5566777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.+++...   |...               .......+++...+..++.........++.+++.++.++     |++..+
T Consensus        93 ~~~llf~~---p~~s---------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s  149 (460)
T PRK11462         93 VCVLAYST---PDLS---------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQS  149 (460)
T ss_pred             HHHHHHhC---CCCC---------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHH
Confidence            76665433   2211               112234455566667888888888888899998875442     999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccc-------cchhHHHHHHHHHHHHHHHHHh
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEI-------SRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      +.....++|..+++.+...+....       +|+....+.+++.++...+.+.
T Consensus       150 ~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        150 WRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            998899998888876655443322       4665555555544444433333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.63  E-value=3.8e-14  Score=153.10  Aligned_cols=421  Identities=16%  Similarity=0.104  Sum_probs=249.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhHH---HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAV---NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~---~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      --|.+.+..|...+..+++..   .+-..+.++++.+.++.+|+.++......+..|+.+.+.||+ |.|.+.++|.++.
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~  121 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVA  121 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHH
Confidence            356677777777777776643   355677889999999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHH-HHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYI-ALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ++|.++.+++++                        .+.+++ .-++.|+|.|.........++.+|+ ++      |+.
T Consensus       122 ~~g~~lssF~~~------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kk------R~l  170 (509)
T KOG2504|consen  122 ALGLLLSSFATS------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KK------RAL  170 (509)
T ss_pred             HHHHHHHHHHhh------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HH------HHH
Confidence            999999999965                        433444 4466899999988888888887775 34      899


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      +.|+...+..+|..+-|.+..++.+.+|||..+++.+.+.+-........+|...+.++.  ..++.- .   .    ..
T Consensus       171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~~-~---~----~~  240 (509)
T KOG2504|consen  171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDLR-N---S----AA  240 (509)
T ss_pred             HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhhc-c---c----cc
Confidence            999988889999999999999999999999999987777655555555555533222221  000000 0   0    00


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccc---------cchhhhhHHHHHHHHHHHHH
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLC---------SVTSVEEVKMVARLLPIWAT  332 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~  332 (575)
                      ..+...... +...+++...... .........        +..+..++..         ..+..++...+.......+.
T Consensus       241 ~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~  310 (509)
T KOG2504|consen  241 SVESTPKPV-ELRISERDSGLKK-LSLSNLATL--------KRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFA  310 (509)
T ss_pred             ccccccccc-ccccccCCCCCCc-ccccchhhh--------hhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHH
Confidence            000000000 0000000000000 000000000        0001111100         01111121111111111111


Q ss_pred             HHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHH
Q 008182          333 TIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL  412 (575)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~  412 (575)
                      ...+...+.    .+.........+    ....+....+..+...+.-++.+++.    ++.    ..+......++.++
T Consensus       311 ~~g~~~p~~----~l~~~~~~~g~~----~~~aa~l~Siigi~~i~gRi~~G~la----D~~----~~~~~~~~~~~ll~  374 (509)
T KOG2504|consen  311 YLGFNVPFV----YLPSYAKSLGLS----SNDAAFLLSIIGVSDIIGRIILGLLA----DKP----GIRALVLFLLTLLI  374 (509)
T ss_pred             HHHHHHHHH----HHHHHHhhcCCC----hhhhHHHHHHHHHhhhhhhhhhhhhc----Ccc----ccchHHHHHHHHHH
Confidence            111111111    111111111000    11122233444444445445545443    221    12233445666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHH
Q 008182          413 SIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL  492 (575)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l  492 (575)
                      .+++.++....                   .+...++...+++|++.+...........+..+.+.-..+.|+..+.+++
T Consensus       375 ~gl~~~~~p~~-------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi  435 (509)
T KOG2504|consen  375 AGLARLFLPFA-------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI  435 (509)
T ss_pred             HHHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence            66666555543                   23345777788888888888877778888999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhh
Q 008182          493 GFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICA  548 (575)
Q Consensus       493 g~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~  548 (575)
                      +..+|+.+.+.+.+..+               .+...|+..++..+++.+..++..
T Consensus       436 ~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  436 GALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999997654332               134556777777777766555544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.54  E-value=3.8e-12  Score=133.62  Aligned_cols=371  Identities=15%  Similarity=0.121  Sum_probs=227.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHHH-HHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTI-AIF   98 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~-~~~   98 (575)
                      ..|+-..--..-+..++.+-.+..++..|.++..|+++..+|.+..+.=+.-++.-|+.|.+.||.   +||+|-. +.+
T Consensus        10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            344444455566667777777889999999999999999999999999999999999999999984   4777754 445


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhh
Q 008182           99 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  178 (575)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (575)
                      .+-.++.++++..+   |...               ........++..++.++++........++.+++.++.++     
T Consensus        90 ~ip~~i~~~l~F~~---p~~~---------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----  146 (467)
T COG2211          90 AIPFAIVAVLLFIT---PDFS---------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----  146 (467)
T ss_pred             hHHHHHHHHHHHcC---CCcc---------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----
Confidence            56777777777665   2111               112355566777888999999988889999998876553     


Q ss_pred             hhhhhhhhhhhHHHhHHHHHHHHhhhccc-------ccchhHHHHHHHHHHHHHHHHHhcCccccc-cCCCCCchhHHHH
Q 008182          179 MAYFFSRFFFFISLGTLMAVTVLVYIQDE-------ISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIVHIFQ  250 (575)
Q Consensus       179 r~~~~~~~~~~~~ig~~l~~~i~~~l~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  250 (575)
                      |.+..++-....++|..+...+.+.+...       .||+..-.+.+++..+.++.+++..++... ..+.++.      
T Consensus       147 R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~------  220 (467)
T COG2211         147 RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG------  220 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc------
Confidence            99999999889999988776666555432       345555555555555554444443332211 1111000      


Q ss_pred             HHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHH
Q 008182          251 VIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIW  330 (575)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  330 (575)
                                                       ..+++-+.-.                      .....|.+...+...
T Consensus       221 ---------------------------------~~~~~~~~~~----------------------~~~~Nrp~~~~l~~~  245 (467)
T COG2211         221 ---------------------------------VKLKLKDSFL----------------------LIFKNRPLLLLLLMN  245 (467)
T ss_pred             ---------------------------------ccccHHHHHH----------------------HHHccchHHHHHHHH
Confidence                                             0000000000                      011222222222222


Q ss_pred             HHHHHHHHhhhcccchhhhhh-cccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHH
Q 008182          331 ATTIIFWTTYAQMITFSVEQA-TTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIG  409 (575)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g  409 (575)
                      ++..   ...+...+...+.. ..++..    ...............+++.++...+    .+|      .++.+...++
T Consensus       246 l~~~---~~~~i~~s~~~yy~~y~lg~~----~l~~~~~~~~~~~~~l~~~~~~p~L----~~~------~gkk~~~~~~  308 (467)
T COG2211         246 LLLF---IAFNIRGSIMVYYVTYVLGDP----ELFAYLLLLASGAGLLIGLILWPRL----VKK------FGKKKLFLIG  308 (467)
T ss_pred             HHHH---HHHHHHhhhhheeEEEEcCCh----HHHHHHHHHHHHHHHHHHHHhHHHH----HHH------hchHHHHHHH
Confidence            2222   22222222222211 112211    1111122222222333334444444    333      2333447778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCC-------cchhHHH
Q 008182          410 LVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSP-------KGMKTMS  482 (575)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~  482 (575)
                      .++..++.+.+.+..                 ..+..++++..++.++|.+...+..++++.+...       .+..|..
T Consensus       309 ~~~~~i~~~~~~f~~-----------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~  371 (467)
T COG2211         309 LLLLAVGYLLLYFTP-----------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIV  371 (467)
T ss_pred             HHHHHHHHHHHHhhc-----------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhH
Confidence            888888877776651                 2344456666788899999999999999987763       3566788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008182          483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSK  511 (575)
Q Consensus       483 ~g~~~~~~~lg~~lg~~l~~~v~~~~~~~  511 (575)
                      .|.+++.+=+|..++..+.+++....+..
T Consensus       372 ~s~~tF~~K~g~ala~~~~g~~L~~~Gyv  400 (467)
T COG2211         372 YSGMTFFRKLGLALAGFIPGWILGAIGYV  400 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88889998899999999999888776643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.54  E-value=2.7e-11  Score=130.31  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccc
Q 008182          446 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  525 (575)
Q Consensus       446 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~  525 (575)
                      +.+.+..++.|+..+..++...++..+..|++..+...|++.+..-.+.++||++.+.+.+..++               
T Consensus       381 ~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------  445 (477)
T PF11700_consen  381 WEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------  445 (477)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence            33556677889999999999999999999999999999999999999999999999998875542               


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh
Q 008182          526 LDLFYGLLAILSIINLVIYLICA  548 (575)
Q Consensus       526 ~~~~f~~~a~l~~v~~~~~~~~~  548 (575)
                      ..+-+..+.++.+++.++.+...
T Consensus       446 ~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  446 QRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             chhHHHHHHHHHHHHHHHHhhcc
Confidence            23445666666666666664443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.53  E-value=7.3e-12  Score=124.46  Aligned_cols=160  Identities=13%  Similarity=0.078  Sum_probs=124.5

Q ss_pred             HHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008182           39 LSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQL  118 (575)
Q Consensus        39 ~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (575)
                      .........+.+-+....|.+..+..++......+..+++-.+|.++|++ |||+.+.+......+.-++-+.+   |  
T Consensus        91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---p--  164 (528)
T KOG0253|consen   91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---P--  164 (528)
T ss_pred             HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---C--
Confidence            33434455566667777899999999999999999999999999999999 99999888877766665665555   3  


Q ss_pred             CCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHH
Q 008182          119 RPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAV  198 (575)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~  198 (575)
                                         |+..+++.|.+.++|.|+ .|...++-.+..|...      |....-.. ....+|.....
T Consensus       165 -------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea  217 (528)
T KOG0253|consen  165 -------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEA  217 (528)
T ss_pred             -------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHH
Confidence                               366788999999999999 7888888888888777      77766555 66788999888


Q ss_pred             HHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          199 TVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       199 ~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      .+.-.+...+||||......+...+....+.+.
T Consensus       218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~  250 (528)
T KOG0253|consen  218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWV  250 (528)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhc
Confidence            888777888999998777665444444444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.51  E-value=4.6e-14  Score=135.15  Aligned_cols=375  Identities=14%  Similarity=0.212  Sum_probs=225.0

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKE  125 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  125 (575)
                      .-+.++.+.+.++..++..++.+.|..-..+.+.++||+.||.+|-|..-++-.+...+|-++.+...-           
T Consensus        64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-----------  132 (459)
T KOG4686|consen   64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-----------  132 (459)
T ss_pred             hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-----------
Confidence            457788898999999999999999999999999999999999889887666666666677666654321           


Q ss_pred             cCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          126 TATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                                .+.++.+..+|+++|+|.-....+.+.+...+|..++      ....+|+......+|+.+-..+.+++.
T Consensus       133 ----------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly  196 (459)
T KOG4686|consen  133 ----------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLY  196 (459)
T ss_pred             ----------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHH
Confidence                      1348889999999999988888889999999999999      999999999899999988888888887


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQ  285 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  285 (575)
                      +..+--.+   ...-..+++.+++-. +.        +..+-.. .......                            
T Consensus       197 ~~~~~~~~---~~ghT~LG~~l~~~~-~t--------c~~slic-al~lg~~----------------------------  235 (459)
T KOG4686|consen  197 DTMGRMFP---GVGHTLLGLWLCFEV-KT--------CKQSLIC-ALSLGLS----------------------------  235 (459)
T ss_pred             HHHHHhcc---cchHHHHHHHHHHHH-HH--------HHHHHHH-HHHhhhh----------------------------
Confidence            65431100   000111111111000 00        0000000 0000000                            


Q ss_pred             hhhhhHHhhhh-cCCcC-CCCCCCCCccccchhhhhHHHHH-HHHHHHHHHHHHHHhhhcccchhhhhhccccccccccc
Q 008182          286 FHFLDKAAIVA-EGDFE-AGSTPNPWKLCSVTSVEEVKMVA-RLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ  362 (575)
Q Consensus       286 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (575)
                          |+.+..+ +.+.+ .++.+      +.   ++++.+- ..-.+.+..+.+++....+.+   .-...+..   .|+
T Consensus       236 ----D~rAerilh~e~g~~Ge~p------kL---tdv~~f~ppfw~~~iicv~yyva~fPFi~---lg~~fF~~---rfG  296 (459)
T KOG4686|consen  236 ----DDRAERILHLEEGFLGEEP------KL---TDVNTFYPPFWVLVIICVLYYVAWFPFIT---LGPMFFQK---RFG  296 (459)
T ss_pred             ----hhHHHHHHhhhcCcccCCc------cc---ccccccCccHHHHHHHHHHHHHHHHHHhh---hhHHHHHH---hhC
Confidence                0000000 00000 00000      00   0111100 001122233333333222211   11011111   123


Q ss_pred             ccccccccchh---HHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 008182          363 IPAGSLTVFFV---SAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTA  439 (575)
Q Consensus       363 ~~~~~~~~~~~---~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (575)
                      .++....+++.   ....+..|+.+.++++..++.         ..+..+.+...++-....+.+               
T Consensus       297 lS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~---------~wv~~a~~~tl~~H~~l~Ft~---------------  352 (459)
T KOG4686|consen  297 LSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL---------WWVASACILTLLGHSGLFFTF---------------  352 (459)
T ss_pred             CChhhccchhhhhhhhhhhhhhhHHHhHhhhccee---------hhHHHHHHHHHHHhhhHHhhh---------------
Confidence            34433333333   334455677888877766553         225555555555544444321               


Q ss_pred             CccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC
Q 008182          440 TLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD  519 (575)
Q Consensus       440 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~  519 (575)
                         .+   -...+.++|++..+.....|..+...+|++.-|++-|+.+..+++|-.+.+.+++++.+..++   ..    
T Consensus       353 ---ls---Py~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~---y~----  419 (459)
T KOG4686|consen  353 ---LS---PYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGS---YD----  419 (459)
T ss_pred             ---cc---HHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCc---hh----
Confidence               22   235688899999999999999999999999999999999999999999999999988754431   12    


Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          520 NINRGRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       520 ~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                           ..+.+|.....+++....+.+.+-+
T Consensus       420 -----~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  420 -----NLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHhheec
Confidence                 2467777777777666665555433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.45  E-value=1.6e-12  Score=141.52  Aligned_cols=180  Identities=12%  Similarity=0.163  Sum_probs=131.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +++.....+...++....+|++..++|.|+++.+|++..+.+.......++..++.+++|+++||+ |||+++.++.+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444445566788899999999999989999998888888888889999999999999999 9999988887654


Q ss_pred             HHHHHH-HHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          103 TLGTGM-LAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       103 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .++... .....+                      .+...+++++++.+++.+...+....++.+.+|++.      |++
T Consensus       327 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~  378 (490)
T PRK10642        327 FVLAIPAFILINS----------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYS  378 (490)
T ss_pred             HHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chH
Confidence            443332 222111                      124556777888777766666667778889999999      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccc-cchhHHHHHHHHHHHHHHHHHhc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +++..+....+++.++|.+.+++.+.. +|+.++++..+..+++++..++.
T Consensus       379 ~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~  429 (490)
T PRK10642        379 ALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM  429 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999855556777888999999987754 47777666555555555554444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=1.1e-12  Score=142.03  Aligned_cols=178  Identities=14%  Similarity=0.048  Sum_probs=135.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.+|...+..++....++++..++|.|+++.+|++..++++....+.++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4578888888888888888889999999999999999999999999999999999999999999 999887766544444


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..+..+...                      .+....++.+++.|+..............|.+|++.      |+++.+
T Consensus       337 ~~~~~~~~~~----------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~g  388 (467)
T PRK09556        337 IFTLGVYQHA----------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANG  388 (467)
T ss_pred             HHHHHHHHhc----------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHH
Confidence            3322222210                      123345566666665433322233355669999888      999999


Q ss_pred             hhhhhHHH-hHHHHHHHHhhhcc------------cccchhHHHHHHHHHHHHHHHHHhc
Q 008182          185 RFFFFISL-GTLMAVTVLVYIQD------------EISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       185 ~~~~~~~i-g~~l~~~i~~~l~~------------~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +.+...++ |+.++|.+.|++.+            ..+|+..|++..+..+++.+..++.
T Consensus       389 i~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        389 IKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999886 77999999999999            5789999988877777765555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.44  E-value=2e-12  Score=136.05  Aligned_cols=194  Identities=12%  Similarity=0.098  Sum_probs=149.5

Q ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccch-H
Q 008182           15 PADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR-Y   92 (575)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~   92 (575)
                      ..++..+.+||.+++..+..+.....++.+.+..-+|+++ |.+-+.+..|++++...++..+..|..|+++.|. |+ |
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k  102 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVK  102 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcc
Confidence            3455557789999999999999999888888888899886 5788889999999999999999999999999998 75 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCC
Q 008182           93 KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD  172 (575)
Q Consensus        93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  172 (575)
                      +-++.+.++.++|.++.......|+                   +...+++++|++.|+|.|. ....-++++|....++
T Consensus       103 ~Pli~s~ii~~~g~llY~~l~~~~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~d  162 (488)
T KOG2325|consen  103 KPLIVSFLIAIIGNLLYLALAYVPN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADASTVED  162 (488)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccc
Confidence            7788899999999998844433333                   2477889999999999886 4677788999877778


Q ss_pred             hHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc----cc---------cchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          173 EKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD----EI---------SRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       173 ~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~----~~---------~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                            |.++++....+..+|..+||.+...+..    .+         -|..+-|+.+++.++..+...+..++.
T Consensus       163 ------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  163 ------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             ------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence                  8888888777667777777666544422    11         144566777777676666655554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.44  E-value=3.3e-10  Score=116.05  Aligned_cols=346  Identities=16%  Similarity=0.216  Sum_probs=201.7

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-----hHH-HHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           53 VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-----RYK-TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-----r~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      ..+++++..-.+.+++..++.+. .++..|+.||+. +     ||- =+..+..+++.+..+.+++.-.  +.      +
T Consensus         7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~--l~------~   76 (403)
T PF03209_consen    7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLL--LA------E   76 (403)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHH--Hc------c
Confidence            45788999988888888877755 689999999997 5     443 3445566777776666665321  11      0


Q ss_pred             CcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      .....+.+.........++..+.|+|.+....+..++++|..||++      |++..++.+...-+|..++..+.+.+.+
T Consensus        77 ~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen   77 SGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            0001122222333445566667888888888899999999999999      9999999999999999999999998888


Q ss_pred             cccchhHHHH----HHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccC
Q 008182          207 EISRSVGYGI----CSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHH  282 (575)
Q Consensus       207 ~~~~~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  282 (575)
                      .++..-..-+    +.+...+.++..+-..++.++..+.++                                       
T Consensus       151 ~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~---------------------------------------  191 (403)
T PF03209_consen  151 PFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAE---------------------------------------  191 (403)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCC---------------------------------------
Confidence            7764332222    222222222222322232221110000                                       


Q ss_pred             CcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhccccccccccc
Q 008182          283 TEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQ  362 (575)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (575)
                      .++.++.+......                ..   .+.++++..  +++....+.+-..-. -.|--+       .  ++
T Consensus       192 ~~~~~f~~a~~~~~----------------~~---~~a~~f~~f--l~l~t~a~~~QD~iL-EPygg~-------V--fg  240 (403)
T PF03209_consen  192 RPRPPFREAWRQVW----------------AS---PQARRFFVF--LFLGTLAFFMQDVIL-EPYGGE-------V--FG  240 (403)
T ss_pred             CCCccHHHHHHHHH----------------hC---CChhHHHHH--HHHHHHHHHhhHHHc-CCchhH-------H--cC
Confidence            00111111111100                00   011222111  111111111110000 011111       0  13


Q ss_pred             cccc---ccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 008182          363 IPAG---SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTA  439 (575)
Q Consensus       363 ~~~~---~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (575)
                      ++.+   .++..-....++...+.+++..   +|      .++.+....|.....+++....+...              
T Consensus       241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~------~~~~~~a~~G~~~~~~~f~lii~a~~--------------  297 (403)
T PF03209_consen  241 MSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR------LGKKRTAALGCLLGALAFALIILAGP--------------  297 (403)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC------CCchHHHHHHHHHHHHHHHHHHHHHh--------------
Confidence            3332   2344445555555545454432   22      23333455666666666665554321              


Q ss_pred             CccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 008182          440 TLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTG  509 (575)
Q Consensus       440 ~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~  509 (575)
                        ..+.+.+....+++|++.++......+...+.++++..|+.+|.|...+.++..++..+.+.+-+...
T Consensus       298 --~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~  365 (403)
T PF03209_consen  298 --LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR  365 (403)
T ss_pred             --cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              23455677889999999999999999999999999999999999999999999888888887766543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.43  E-value=5.2e-12  Score=133.60  Aligned_cols=178  Identities=13%  Similarity=0.096  Sum_probs=132.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +++|..+..+...++....++....++|.|+++++|++..+.+.+.+...+...++.+++|+++||+ |||+.+..+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~  291 (393)
T PRK15011        213 RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVA  291 (393)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence            3445444444444555455555667899999999999999999988888888888999999999998 999988777655


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..+.........                        +...+++.+++.+++.+...+.......|.+|+ +      |++
T Consensus       292 ~~~~~~~~~~~~------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~  340 (393)
T PRK15011        292 GVCFYAGMLMAH------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGS  340 (393)
T ss_pred             HHHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cch
Confidence            544433333221                        244455667766666665555556667787764 5      788


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +.++++...++|..++|.++|++.+..+|+.+|++.++..+++++..+..
T Consensus       341 ~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        341 ATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99998888899999999999999998899999998887777766666554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=6.9e-12  Score=132.73  Aligned_cols=175  Identities=13%  Similarity=0.026  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG  107 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~  107 (575)
                      +.......+..++++.+..+++.|+.+ .|+  .+.+...+.+.++..++.++.|++.||+ ||||.+.++..+..++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~  294 (399)
T PRK05122        219 WPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLL  294 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence            333333444556666777888888764 465  3456667778888889999999999998 999999988888888777


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      +..+.+                        +...+++.+++.|++.+...+.......|.+|+++      |++++++++
T Consensus       295 ~~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~  344 (399)
T PRK05122        295 LLWLAP------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYS  344 (399)
T ss_pred             HHHHhc------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence            666542                        24456677888999988888877777888888877      999999999


Q ss_pred             hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccc
Q 008182          188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYR  236 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  236 (575)
                      ...++|..+++.+.|++.+..||+..|++.++..+++++......++.+
T Consensus       345 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        345 VFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999899999999888877777766665555433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3.9e-12  Score=129.50  Aligned_cols=180  Identities=19%  Similarity=0.158  Sum_probs=143.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhccc-chHHHH-HHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL-GRYKTI-AIFAAVQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Gr~~~~-~~~~~~~  102 (575)
                      |.+|.+++..++.-+.-|++..+.|.|+.|..|+|..++++..+.|-.+...+.+++||+|||++ |||... +++++..
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999987 777644 4444445


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.+...++   |.                   ++..+..+..+.+|+-.-+..-.+.....|..|++-      -|++
T Consensus       332 ~~~~~~~w~~---~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA  383 (448)
T COG2271         332 TASLVLYWLA---PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTA  383 (448)
T ss_pred             HHHHHHHHcC---CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccch
Confidence            5555555554   22                   245566666666666555555555556678888777      8999


Q ss_pred             hhhhhhhHHH-hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          183 FSRFFFFISL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       183 ~~~~~~~~~i-g~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      .|....+..+ |..++....+++.|.+||...|.+..+..+++.++++...
T Consensus       384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999988 9999999999999999999999887777666666554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.38  E-value=4e-12  Score=132.39  Aligned_cols=171  Identities=13%  Similarity=0.076  Sum_probs=136.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.++.+....++..+.........++|. +++|.+..+.+.+.+.+.++..+++++.|+++||+ |||+.+.++.++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3455555555555555555666677775 46899999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.++..+..+                      .+...++...++.+++.+...+..+.++.|.+|+++      |++.++
T Consensus       283 ~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g  334 (377)
T TIGR00890       283 GMAAMLFIPM----------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYG  334 (377)
T ss_pred             HHHHHHHccc----------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhH
Confidence            8776665421                      112234455667778878777777888999999888      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHH
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAI  225 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~  225 (575)
                      +.+...++|..++|.+.|++.+..||+..|.+.++..++++
T Consensus       335 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       335 FLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988877666543

>PRK09952 shikimate transporter; Provisional

Probab=99.37  E-value=9.9e-12  Score=133.44  Aligned_cols=182  Identities=15%  Similarity=0.063  Sum_probs=133.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      +++.....+...++..+.+|...++++.|+++.+|++......+.........++.++.|+++||+ ||||+++.+.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            444444445567777888999999999999999999988766666666777788899999999999 9999998887665


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++...+.......                    .....+++..++.+++.+...+...++++|.+|.+.      |+++
T Consensus       327 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg  380 (438)
T PRK09952        327 TLSAFPFFMALEAQ--------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSG  380 (438)
T ss_pred             HHHHHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHH
Confidence            55443333221100                    113333445556677777777888899999999988      9888


Q ss_pred             hhhhhh-hHHHhHHHHHHHHhhhcccc--cchhHHHHHHHHHHHHHHHHHhc
Q 008182          183 FSRFFF-FISLGTLMAVTVLVYIQDEI--SRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       183 ~~~~~~-~~~ig~~l~~~i~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      .++.+. +..+|+.++|.+.+++.+..  +|+.++.+.++..+++.+..+..
T Consensus       381 ~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        381 AGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            888544 45589999999999997743  48888887777777666665554

>PRK03699 putative transporter; Provisional

Probab=99.36  E-value=1.1e-11  Score=131.28  Aligned_cols=174  Identities=10%  Similarity=0.122  Sum_probs=135.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.++...+..++....++++..++|.|+++.+|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4566666666777777888889999999999999999999999999999999999999999999 999998887766666


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ...+....+                        +...+.+..++.|++.+...+...+...+..++ +      +++..+
T Consensus       284 ~~~~~~~~~------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~g  332 (394)
T PRK03699        284 LMYLFVNTD------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-A------SPKLVN  332 (394)
T ss_pred             HHHHHHHcC------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C------CHHHHH
Confidence            554444331                        233344556677777776777777777776653 3      455677


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ....+.++|..++|.+.|++.+..|++..|++.++..+++.+.++.
T Consensus       333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHH
Confidence            7777889999999999999999999999998877776666554443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.36  E-value=1.5e-11  Score=126.62  Aligned_cols=174  Identities=21%  Similarity=0.242  Sum_probs=152.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK-TIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~~~~~~~~~~  103 (575)
                      |.++...+..++..........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            4456666677777788888888999999988899999999999999999999999999999999 9999 9999999888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++.....                        +....++..++.+++.+...+....++.|..|+++      |++.+
T Consensus       254 i~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  303 (352)
T cd06174         254 LGLLLLALAP------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTAS  303 (352)
T ss_pred             HHHHHHHHhc------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHH
Confidence            8888777652                        25567788899999999999999999999999887      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  229 (575)
                      +..+...++|..++|.+.+++.+..+|+..|++.++..+++.+...
T Consensus       304 ~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         304 GLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999889999999998888777666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00889 2A0110 nucleoside transporter

Probab=99.36  E-value=7.8e-12  Score=133.32  Aligned_cols=180  Identities=12%  Similarity=0.060  Sum_probs=139.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCC--------chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLP--------SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAI   97 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~   97 (575)
                      .++..++..++..........+++.|+.+ .|.+        .+..+.+.++..+...++.++.|+++||+ |||+++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~  286 (418)
T TIGR00889       209 RMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLL  286 (418)
T ss_pred             CeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHH
Confidence            34455555666555555566777888764 4544        36678999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhh
Q 008182           98 FAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT  177 (575)
Q Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~  177 (575)
                      +.++..++..++.....  .                  ..+...+++.+++.+++.+...+....+++|.+|+++     
T Consensus       287 ~~~~~~v~~~l~~~~~~--~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~-----  341 (418)
T TIGR00889       287 SLVAWALRFGFFAYGDP--E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI-----  341 (418)
T ss_pred             HHHHHHHHHHHHHHcCc--c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence            99988887766655311  0                  0124556778889999988888888899999999888     


Q ss_pred             hhhhhhhhhh-hhHHHhHHHHHHHHhhhccc------ccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          178 QMAYFFSRFF-FFISLGTLMAVTVLVYIQDE------ISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       178 ~r~~~~~~~~-~~~~ig~~l~~~i~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                       |++++++.+ ...++|..+||.++|++.+.      +||+..|.+.++..+++.++..+..+
T Consensus       342 -~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       342 -RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence             999999986 56789999999999999887      46999999887776666555555444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.35  E-value=2e-11  Score=127.68  Aligned_cols=173  Identities=16%  Similarity=0.118  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++.+....++.....+.....++.|+.+++|.++.+.+.+.........++.+++|+++||+ |||+.+.++.+...+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAF  278 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHH
Confidence            344444444444444455567789999999999999999988887777788899999999998 9999988877665555


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .......+                        +.+.+++.+++.+++.+...+....+..|..|+ +      +++++++
T Consensus       279 ~~~~~~~~------------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~------~~~~~~~  327 (375)
T TIGR00899       279 YTGLAADN------------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-R------AGAATTL  327 (375)
T ss_pred             HHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-h------hhHHHHH
Confidence            44443331                        244556667778888887777777888888765 4      5689999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ++...++|..++|.+.|++.+..||+..|++.++..+++.+...+
T Consensus       328 ~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  372 (375)
T TIGR00899       328 YTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLL  372 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence            999999999999999999999899999999888877777666544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.35  E-value=4e-10  Score=115.19  Aligned_cols=346  Identities=15%  Similarity=0.137  Sum_probs=186.8

Q ss_pred             hHHHHHHHhhhcCCC---C----chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHHHHHHHhhh
Q 008182           44 IAVNLVTYLVGTMHL---P----SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-IFAAVQTLGTGMLAMVTKL  115 (575)
Q Consensus        44 ~~~~l~~yl~~~l~~---~----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~~~~~l~~~~~~~  115 (575)
                      +...+|+|+++..+-   +    ++..+...++..+...+..|+.|.++|.. |+||-.. ....+..+...++.++++ 
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~-  111 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP-  111 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC-
Confidence            456789999887654   2    24556677778888889999999999998 8766544 445555556666766622 


Q ss_pred             cccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHH
Q 008182          116 RQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTL  195 (575)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~  195 (575)
                                          ..++....+..++..++........++++.|..++++      .++..+.-+...++|+.
T Consensus       112 --------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~  165 (438)
T COG2270         112 --------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSV  165 (438)
T ss_pred             --------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccch
Confidence                                1235555666667788888888899999999999888      44444444445556665


Q ss_pred             HHHHHH--hhh-c---------------ccccchhHHHHHHHHHHHHHHHHHhcCccccccC-CCCCchhHHHHHHHHHH
Q 008182          196 MAVTVL--VYI-Q---------------DEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKK-SSGSPIVHIFQVIVAAI  256 (575)
Q Consensus       196 l~~~i~--~~l-~---------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  256 (575)
                      +.-++.  ..+ .               +...-|..+.++++-.++..+-++...++..+.. +.++....-.+.+...+
T Consensus       166 i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~  245 (438)
T COG2270         166 ILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTF  245 (438)
T ss_pred             HHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence            554332  111 1               2223566666666665555554444444322111 11111111111111111


Q ss_pred             HhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHH
Q 008182          257 KKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIF  336 (575)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  336 (575)
                      ++                                                          .+.+|.+.    .|+..-.+
T Consensus       246 k~----------------------------------------------------------i~~~~~i~----~FLiA~~~  263 (438)
T COG2270         246 KE----------------------------------------------------------IRGRKNLV----LFLIARFF  263 (438)
T ss_pred             HH----------------------------------------------------------HhcccchH----HHHHHHHH
Confidence            11                                                          11111111    11111111


Q ss_pred             HHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHH
Q 008182          337 WTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVG  416 (575)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~  416 (575)
                      +  .....+....-..+-..+   ++++...+..+..... +.+.+...+..++.+|+..      .+.+..+.++..+.
T Consensus       264 ~--~DGv~til~~~~~fg~~~---~gls~~~lll~g~~~~-vvA~lg~ii~g~Ld~rfg~------k~vl~~~lvi~~~~  331 (438)
T COG2270         264 Y--IDGVNTILAMGGVFGAAD---LGLSSTELLLIGIALS-VVAALGAIIAGFLDERFGS------KPVLMIGLVILSIA  331 (438)
T ss_pred             H--HhhHHHHHHHHHHHHHHH---cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC------ceeehHHHHHHHHH
Confidence            1  011111111000000000   1122211111111111 2222233333334455432      23345555555544


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFV  496 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~l  496 (575)
                      .+...+..                   ......+...+.+...+-.+....++..+.+|++..+...|+++++...+.++
T Consensus       332 ~~~~~~~~-------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~  392 (438)
T COG2270         332 ALYLIFLE-------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFL  392 (438)
T ss_pred             HHHHHHcc-------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHH
Confidence            44333321                   11223344567788888889999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCC
Q 008182          497 SSFLVAVVKKVTGS  510 (575)
Q Consensus       497 g~~l~~~v~~~~~~  510 (575)
                      ||.+++.+.+.+++
T Consensus       393 gp~lv~v~t~iTg~  406 (438)
T COG2270         393 GPFLVAVITQITGS  406 (438)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999998876653

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.34  E-value=3.9e-11  Score=126.97  Aligned_cols=178  Identities=12%  Similarity=-0.035  Sum_probs=138.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +..+.+.+..++...+++++..++|.|+.+ +|++..+.+...+.+.++..++.++.|+++||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            456666666777778888999999999986 799999999999999999999999999999998 999999998877777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCC-CChHhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  183 (575)
                      +..+....   +.                    +....  ..++.+++.+...+.......+.+++ ++      |++.+
T Consensus       283 ~~~~~~~~---~~--------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~  331 (393)
T PRK09705        283 GFCGFIWL---PL--------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLV  331 (393)
T ss_pred             HHHHHHHc---cc--------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHH
Confidence            76554432   11                    11112  12356777777777777667777753 44      89999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      ++.+...+++..++|.+.|++.+..| |...|++.++..++.++..+...++.
T Consensus       332 g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        332 AFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999999876 88888887776666666655555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.34  E-value=9.1e-12  Score=130.55  Aligned_cols=168  Identities=18%  Similarity=0.122  Sum_probs=131.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.++......++....++....+++.|+++++|.++.+.+.+.....++..++.+++|+++||+ |||+.+.++..+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  297 (394)
T TIGR00883       219 KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAAL  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence            3466777777788888888889999999989999999999999999999999999999999999 999988766544443


Q ss_pred             HH-HHH-HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          105 GT-GML-AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       105 ~~-~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .. .+. .+...                      .+...+++..++.+++.+...+...+++.|.+|++.      |+++
T Consensus       298 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~  349 (394)
T TIGR00883       298 LAVPLLMALLDS----------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTG  349 (394)
T ss_pred             HHHHHHHHHhcC----------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeE
Confidence            32 222 12100                      124455666777888888888889999999999988      9999


Q ss_pred             hhhh-hhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHH
Q 008182          183 FSRF-FFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAM  221 (575)
Q Consensus       183 ~~~~-~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~  221 (575)
                      ++.. .....+|..++|.++|++.+..| |+..++......
T Consensus       350 ~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       350 ASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            9984 45567899999999999999888 887776655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.33  E-value=1.5e-11  Score=138.30  Aligned_cols=135  Identities=10%  Similarity=0.031  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHH
Q 008182           65 NIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYI  144 (575)
Q Consensus        65 ~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (575)
                      ....+..++..++.+++|+++||+ |||++++++.++.+++.++++++.+                        ...+++
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s------------------------~~~ll~  653 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS------------------------ESAMIA  653 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc------------------------HHHHHH
Confidence            334556688889999999999998 9999999999999998888877632                        334556


Q ss_pred             HHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Q 008182          145 ALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMA  224 (575)
Q Consensus       145 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~  224 (575)
                      .+++.++..+...+...++++|++|++.      |++++++.+...++|.+++|++++++.+. +...+|++.+++.+++
T Consensus       654 ~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~  726 (742)
T TIGR01299       654 LLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACG  726 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Confidence            6667777767777888899999999998      99999999999999999999999988763 4667888777776666


Q ss_pred             HHHHHhc
Q 008182          225 IIIFLAG  231 (575)
Q Consensus       225 ~~~~~~~  231 (575)
                      .++.+++
T Consensus       727 ~ll~~~L  733 (742)
T TIGR01299       727 GLLALKL  733 (742)
T ss_pred             HHHHHhC
Confidence            5555544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.32  E-value=6.2e-11  Score=125.14  Aligned_cols=175  Identities=7%  Similarity=-0.063  Sum_probs=135.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++..+...++.....++...++++|+.+.+|.+..+.+++.+.+.++..+++++.|+++||+ |||+.. .+..+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~  283 (390)
T PRK03545        206 ALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVC  283 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHH
Confidence            344555555666666677778889999988999999999999999999999999999999998 987654 444444444


Q ss_pred             HHHH-HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          106 TGML-AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       106 ~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ..+. ...                        .+...+++..++.|++.+...+.....+.+..| +.      |+++++
T Consensus       284 ~~~l~~~~------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g  332 (390)
T PRK03545        284 LLLLLPAA------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMA  332 (390)
T ss_pred             HHHHHHHh------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHH
Confidence            3332 222                        124556667778888877776777777777765 46      889999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      ++....++|..+||.++|++.+..|++..|++.+++.+++++......+
T Consensus       333 ~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        333 LFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            9988899999999999999999999999999988888887777665544

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.31  E-value=5.7e-10  Score=114.62  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=107.6

Q ss_pred             HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           47 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        47 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      ....|....+| +...+.|...+|.+.+.....++-|+.||+ |-|.+.+++..+..+|..+=..+. .|.+.+      
T Consensus        66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~------  136 (480)
T KOG2563|consen   66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP------  136 (480)
T ss_pred             hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc------
Confidence            45567777778 777788999999999999999999999999 999999999999999988776663 232111      


Q ss_pred             CcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                               ..-..+.+.+..+.+.+.-.......-+-+-+|++++      |..+..+-.+++.+|.+++.++.+.+..
T Consensus       137 ---------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  137 ---------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             ---------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence                     0012366777788777777666665666788899998      9999988888888888888888777765


Q ss_pred             cc
Q 008182          207 EI  208 (575)
Q Consensus       207 ~~  208 (575)
                      +.
T Consensus       202 ~~  203 (480)
T KOG2563|consen  202 SS  203 (480)
T ss_pred             CC
Confidence            44

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.30  E-value=5.2e-11  Score=126.17  Aligned_cols=167  Identities=17%  Similarity=0.067  Sum_probs=129.7

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCch---hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSA---TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLA  110 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~  110 (575)
                      .++.......+.+.++.|+.+..+....   ..+.+.++..++..++.+..|+++||+ |||+.+..+..+..++.+...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3344444445567788888765432221   244555666778888899999999999 999999998887777666655


Q ss_pred             HHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhH
Q 008182          111 MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFI  190 (575)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  190 (575)
                      +..                        +...+++.+++.|++.+...+...+.+.+..+++.      |++.+++++...
T Consensus       307 ~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~  356 (408)
T PRK09874        307 FVQ------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFR  356 (408)
T ss_pred             Hhc------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHH
Confidence            441                        24556778888999999988888888888888888      999999999999


Q ss_pred             HHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          191 SLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       191 ~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++|..+||.++|++.+..||+..|++.+++.+++.+..+..
T Consensus       357 ~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        357 DIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888777776665543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.30  E-value=5.3e-11  Score=126.19  Aligned_cols=171  Identities=15%  Similarity=0.030  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG  107 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~  107 (575)
                      +.+....++.....+....++|.|+.+ .|+++.+.+.+.+.+.++..++.++.|+++||+ |||+.+.++.+...++..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            344444555556677777888999875 799999999999999999999999999999998 999998887666666655


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      +.....                        +...+.+..++.+++.+...+...++..|.+|+++      |++..++.+
T Consensus       301 ~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~  350 (406)
T PRK11551        301 ALAAAP------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAV  350 (406)
T ss_pred             HHHhcC------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHH
Confidence            544331                        13344555666777777777888889999999988      999999999


Q ss_pred             hhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHh
Q 008182          188 FFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ...++|..++|.+.|++.+..+ |...+++.....+++.+..+.
T Consensus       351 ~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        351 AVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988654 555666555555555444443

>TIGR00897 2A0118 polyol permease family

Probab=99.29  E-value=8.7e-11  Score=124.63  Aligned_cols=177  Identities=13%  Similarity=0.087  Sum_probs=131.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH-HHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-IFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-~~~~~~~  103 (575)
                      |.++...+..++...++++..+++|.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44666777778888888999999999986 5899999999999999999999999999999998 9988764 3333333


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.+.+........                   .+....++..++.|++.+...+ ..+...+.. +++      |++++
T Consensus       300 ~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~------~g~~~  352 (402)
T TIGR00897       300 IFTLALYYIPQHFG-------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKH------KGAAM  352 (402)
T ss_pred             HHHHHHHHHHHccC-------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cch------hHHHH
Confidence            43333332211000                   1244455666777777766544 345556654 446      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ++.+...++|..++|.+.+++.+..||+.+|++.++..+++.++..+
T Consensus       353 g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       353 SVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888877776665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.29  E-value=3.6e-11  Score=126.95  Aligned_cols=164  Identities=13%  Similarity=0.127  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  113 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~  113 (575)
                      .++..+.+..+..+.+.|+.+ .|++  +.+.....+.++..+++++.|++.||+ ||||.+.++..+..++.++..+..
T Consensus       225 ~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~  300 (392)
T PRK12382        225 LALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP  300 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc
Confidence            334455566667778888865 4654  355666677778889999999999998 999999999888888877766542


Q ss_pred             hhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHh
Q 008182          114 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  193 (575)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  193 (575)
                                              +....++..++.+++.+...+.......|.+++++      |++.+++++...++|
T Consensus       301 ------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g  350 (392)
T PRK12382        301 ------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIA  350 (392)
T ss_pred             ------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHH
Confidence                                    24556677888899988888888888889898888      999999999999999


Q ss_pred             HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          194 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       194 ~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ..++|.+.+++.+..||+..|.+.++..+++.+..+..
T Consensus       351 ~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        351 YGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999888777776665544

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.29  E-value=2e-11  Score=130.22  Aligned_cols=173  Identities=13%  Similarity=0.051  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      ++.+++..++....+......++.|+.+.+   +.+..+.+.+.++..+...++.+++|+++||+ |||+.+.++.++..
T Consensus       225 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~  303 (420)
T PRK09528        225 FWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMA  303 (420)
T ss_pred             eEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHH
Confidence            333333333343444444556777776543   56777889999999999999999999999999 99999999988888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.+++++++                        +.+.+++.+++.+++.+...+....++.+.+|++.      |++..
T Consensus       304 ~~~~l~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~  353 (420)
T PRK09528        304 VRIIGSGFAT------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIY  353 (420)
T ss_pred             HHHHHHHhcc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeee
Confidence            8887777652                        25557777888888888777777788899998887      88777


Q ss_pred             hh-hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          184 SR-FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       184 ~~-~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      +. ++...++|..++|.+.|++.+..||+..|.+.+++.++..++.++
T Consensus       354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            66 667788999999999999999999999999877766655544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.29  E-value=6e-11  Score=124.06  Aligned_cols=177  Identities=13%  Similarity=0.015  Sum_probs=130.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-HHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT-IAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~-~~~~~~~~~  103 (575)
                      |.++..++..++....++....+++.|+.+.+|.++.+.+++.+...+...++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4577777788888888888899999999999999999999999999999999999999999998 98861 111111111


Q ss_pred             HHH---HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          104 LGT---GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       104 ~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ++.   .+........                    ...........+.+.+.+ ..+...++.+|.+|+++      |+
T Consensus       294 ~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g  346 (399)
T TIGR00893       294 IAGLVLSLLMFATNYV--------------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AG  346 (399)
T ss_pred             HHHHHHHHHHHHhccc--------------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HH
Confidence            111   1111110000                    112222222333344444 67888999999999988      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHH
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~  229 (575)
                      +.+++.+...++|..++|.+.|++.+..| |+..|++.++..+++.+..+
T Consensus       347 ~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       347 LTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888 99999888777666655544

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.28  E-value=6.2e-11  Score=129.18  Aligned_cols=150  Identities=19%  Similarity=0.159  Sum_probs=115.4

Q ss_pred             hhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008182           43 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  122 (575)
Q Consensus        43 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  122 (575)
                      ....++|.|+++++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++......        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4567899999989999999999999999999999999999999998 9999988887666655443332211        


Q ss_pred             CCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                                    .+...+.+..++.+.......+..++++.|.+|++.      |++.+++.+...++|+.++|.+.|
T Consensus       364 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g  423 (496)
T PRK03893        364 --------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGA  423 (496)
T ss_pred             --------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHH
Confidence                          122333333333332222334666778899999888      999999999999999999999999


Q ss_pred             hhcccccchhHHHHHHHHH
Q 008182          203 YIQDEISRSVGYGICSVAM  221 (575)
Q Consensus       203 ~l~~~~~~~~~f~~~~~~~  221 (575)
                      ++.+.+||+..+...+...
T Consensus       424 ~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        424 LIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHhccCChHHHHHHHHHHH
Confidence            9999999998876555433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.28  E-value=9.6e-11  Score=123.35  Aligned_cols=163  Identities=13%  Similarity=0.194  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  113 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~  113 (575)
                      .+...+.+.....++|.|+++ .|.++.+.+.+.+...++..+++++.|+++||+ |||+.+..+..+..++.+... . 
T Consensus       209 ~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-  284 (381)
T PRK03633        209 CIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-
Confidence            333344444556778889875 699999999999999999999999999999999 999999888877777654432 1 


Q ss_pred             hhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHh
Q 008182          114 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLG  193 (575)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig  193 (575)
                                               ......++++.+++.+...|...+.+.|..|+++      ++...+.++...++|
T Consensus       285 -------------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG  333 (381)
T PRK03633        285 -------------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVG  333 (381)
T ss_pred             -------------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHH
Confidence                                     1113345566777666777888888889887766      777777777888999


Q ss_pred             HHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          194 TLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       194 ~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ..++|.++|++.+.++|++.|.+.+...+++.+..++.
T Consensus       334 ~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        334 SLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999998877776655554443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.28  E-value=1.1e-11  Score=109.64  Aligned_cols=134  Identities=18%  Similarity=0.240  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHH
Q 008182           67 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL  146 (575)
Q Consensus        67 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (575)
                      .+.+.++..++.++.|+++||+ |||+.+..+..+..++.++.....                        +...+.+.+
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~   58 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS------------------------NITVLIIAR   58 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHH
Confidence            3456678889999999999998 999999999888888877776652                        256677888


Q ss_pred             HHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHH
Q 008182          147 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAII  226 (575)
Q Consensus       147 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~  226 (575)
                      ++.+++.+...+...+++.|.+|+++      |++..++.+...++|..++|.+.+++.+..+|++.|++.++..+++.+
T Consensus        59 ~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        59 FLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            99999999888999999999999988      999999999999999999999999999988999999888777666655


Q ss_pred             HHHhc
Q 008182          227 IFLAG  231 (575)
Q Consensus       227 ~~~~~  231 (575)
                      .....
T Consensus       133 ~~~~~  137 (141)
T TIGR00880       133 LLAFL  137 (141)
T ss_pred             HHhhc
Confidence            55443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.28  E-value=5.1e-11  Score=126.97  Aligned_cols=175  Identities=9%  Similarity=-0.008  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      ++..++..++... .+++..++|.|+++.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++.+++.
T Consensus       226 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~  303 (417)
T PRK10489        226 VGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAV  303 (417)
T ss_pred             HHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHH
Confidence            3333333444322 456677889999988999999999999999999999999999999997 88888888888777777


Q ss_pred             HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh
Q 008182          107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  186 (575)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  186 (575)
                      +++.+.+                        +.....+..++.|++.+...+...+++.|.+|++.      |++.++++
T Consensus       304 ~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~  353 (417)
T PRK10489        304 GLFGLMP------------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLW  353 (417)
T ss_pred             HHHHccc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHH
Confidence            6665542                        24455667777888877776777788899999888      99999999


Q ss_pred             hhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          187 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       187 ~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +...++|..+||.+.|++.+..|++..+++.++..++..++.....+
T Consensus       354 ~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        354 TAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999888888776655554444433333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.28  E-value=4.4e-11  Score=128.93  Aligned_cols=177  Identities=16%  Similarity=0.075  Sum_probs=124.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccch--HHHH-HHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR--YKTI-AIFAAV  101 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~-~~~~~~  101 (575)
                      +.+|...+..++.....|+...++|.|+++..|++..+.+.....+.++..++.+++|+++||+ ++  |+.. .....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            4577777777787788888899999999999999999999999999999999999999999997 53  3322 222233


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.++..+.   +.                   .+.....+..++.|.+..........+..|.+|++.      |++
T Consensus       332 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~  383 (452)
T PRK11273        332 VTIATIVYWLN---PA-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  383 (452)
T ss_pred             HHHHHHHHHHh---cc-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhh
Confidence            33333322221   10                   112233334444444322222223345678999888      999


Q ss_pred             hhhhhhhhHHHhHHH-HHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          182 FFSRFFFFISLGTLM-AVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l-~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ++++.+...++|+.+ +|.+.|++.+..||+..|++.++..+++++....
T Consensus       384 ~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        384 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            999998888888765 7999999999999999999887766666555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.27  E-value=1.1e-10  Score=122.92  Aligned_cols=170  Identities=6%  Similarity=-0.029  Sum_probs=144.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++.....+...++.++|+++ +|.++.+.+.+.+...+...+..+++|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            457777777888888888888999999975 899999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ..++.++++                        +.+.+++.+.+.|+..+...+....++.+. |+++      |+++.+
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~  331 (382)
T TIGR00902       283 RWAIIGAIE------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQA  331 (382)
T ss_pred             HHHHHHhHh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHH
Confidence            988887763                        366788889999999999999999999987 7777      888888


Q ss_pred             hhh-hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHH
Q 008182          185 RFF-FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       185 ~~~-~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~  228 (575)
                      +++ ....+|..++|.++|++.+..|+ ..|++.+++.++++++.
T Consensus       332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            876 46789999999999999999886 66777766666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.27  E-value=6.1e-11  Score=121.04  Aligned_cols=186  Identities=17%  Similarity=0.079  Sum_probs=149.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      -|..|.+++.++...-++-++..+++.|+++++++++.+++.....+.+...+.++.+|+|+||+ |.+|++.+....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            46789999988888888889999999999999999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++..+.....+...         |        ..+...++...+.+++..|.-...+..++...|+++       -+...
T Consensus       296 ~~~~~l~~~~~~~~---------~--------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~  351 (417)
T COG2223         296 LAAALLSLFLTGFG---------H--------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVT  351 (417)
T ss_pred             HHHHHHHccccccc---------c--------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHH
Confidence            98888876521110         0        112333333344444555555556688888888764       58889


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcCcc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKR  234 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~  234 (575)
                      ++...+.++|+..-|...+...+.+| +...|++.....+++.+..+..+.|
T Consensus       352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r  403 (417)
T COG2223         352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYAR  403 (417)
T ss_pred             HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988887 9999999888888887776665443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.26  E-value=8.1e-11  Score=126.21  Aligned_cols=180  Identities=15%  Similarity=0.056  Sum_probs=122.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR--YKTIAIFAAVQT  103 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr--~~~~~~~~~~~~  103 (575)
                      .++.+.+..++..+.++++..++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+|  +.......+...
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            466666666666777778888999999889999999999999999999999999999999997322  222222211111


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      +....+...   +.                   .+.....+..+.+|++............+|.++++.      |++..
T Consensus       324 ~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  375 (434)
T PRK11663        324 LSVGSLWLM---PF-------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAAT  375 (434)
T ss_pred             HHHHHHHHc---cc-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHH
Confidence            111111111   11                   012222233333343322222223445678888777      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      ++.+...++|..++|.+.|++.+..||+..|++.++..+++.+..+...+
T Consensus       376 g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  425 (434)
T PRK11663        376 GFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN  425 (434)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999888777666555554433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.24  E-value=7.9e-10  Score=112.98  Aligned_cols=86  Identities=19%  Similarity=0.053  Sum_probs=71.8

Q ss_pred             hhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc---------
Q 008182          137 FQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---------  207 (575)
Q Consensus       137 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~---------  207 (575)
                      .++..++++.++.|.|.+...+..++++++..++++      +++.+++...+..+|..++|.+++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            357889999999999999999999999999999888      89999999999999999999999987632         


Q ss_pred             -------ccchhHHHHHHHHHHHHHHHH
Q 008182          208 -------ISRSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       208 -------~~~~~~f~~~~~~~~~~~~~~  228 (575)
                             ..|+++|++.+++..+..+.+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   368899886655544444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.23  E-value=4e-09  Score=112.49  Aligned_cols=350  Identities=13%  Similarity=0.058  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHhh---HHHHHHHhhhcCCCCchh-hHHHHHHH----HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           33 IELCERLSTMGI---AVNLVTYLVGTMHLPSAT-SANIVTDF----MGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        33 ~~~~~~~~~~~~---~~~l~~yl~~~l~~~~~~-~~~~~~~~----~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      ..+...++++..   ..+...+.....+.+... .+......    .+...+..+..|.++||+ |||..+.+.++...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHH
Confidence            334444444433   355555655554443332 22333333    567788899999999999 999999999888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHH--cccccccchhccccccCCCCChHhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIAL--GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      ..+...+.                          .+++++   +.++  +.+.......++++|...+++      |...
T Consensus       105 ~~~~~~~~--------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~  149 (463)
T KOG2816|consen  105 PALCLLFQ--------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSS  149 (463)
T ss_pred             hHHHHHHH--------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHH
Confidence            77666654                          122222   3333  334556777889999999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCC-chhHHHHHHHHHHHhccc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGS-PIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  261 (575)
                      +++.......+..++|..++++.+..|...+|++..+..+++.+..++..|+...++.++. +..               
T Consensus       150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~---------------  214 (463)
T KOG2816|consen  150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLR---------------  214 (463)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccccc---------------
Confidence            9999999999999999999999999999999999999888888777766654433222210 000               


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  341 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (575)
                        ...               ..++.++-..               .+++...  ..+.+|..+..+.  ......+.-..
T Consensus       215 --~~~---------------~~~~~~~~~~---------------~~~~~~~--~~~~~r~~l~l~l--~~~~~~~~~~~  258 (463)
T KOG2816|consen  215 --ELT---------------PGSLDSSHVA---------------DAFQSLT--KVGPDRLLLLLLL--VAFLSSLPEAG  258 (463)
T ss_pred             --ccC---------------CCcccchhhh---------------hhhhhhc--ccCCCccchHHHH--HHHHHHHHHhc
Confidence              000               0000000000               0000000  0111222221111  11111111111


Q ss_pred             ccc-chhhhhhccccccccccccccc---ccccc----hhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHH
Q 008182          342 QMI-TFSVEQATTMERSIGRFQIPAG---SLTVF----FVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLS  413 (575)
Q Consensus       342 ~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~  413 (575)
                      +.. ..+.    +....   +++...   .+...    ..+..+++.|+....   +..          .+.+..|+..-
T Consensus       259 ~~~~~~~~----yl~~~---f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~---l~~----------~~~i~lGl~~~  318 (463)
T KOG2816|consen  259 GASDVLLL----YLKAK---FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI---LGE----------KRLISLGLLSE  318 (463)
T ss_pred             CceeEEEE----EEeee---cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh----------hhHhhHHHHHH
Confidence            111 1111    11212   122221   12222    233333333333222   111          12478899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHH
Q 008182          414 IVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLG  493 (575)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg  493 (575)
                      .+..+++++.+.                    .|................|...+++...+.++.+|+..++......++
T Consensus       319 ~~~~~~~af~~~--------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~  378 (463)
T KOG2816|consen  319 FLQLLLFAFATE--------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLS  378 (463)
T ss_pred             HHHHHHHHHhcc--------------------chhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHh
Confidence            999999987632                    244455556666677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcC
Q 008182          494 FFVSSFLVAVVKKVTG  509 (575)
Q Consensus       494 ~~lg~~l~~~v~~~~~  509 (575)
                      +.+++.+.+.++....
T Consensus       379 ~~~~~~~~~~i~~~t~  394 (463)
T KOG2816|consen  379 GVVSPALYGNIFALTL  394 (463)
T ss_pred             hhhhHHHHHHHHHHHH
Confidence            9999999998877654

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.23  E-value=2.5e-10  Score=124.28  Aligned_cols=180  Identities=13%  Similarity=0.122  Sum_probs=131.3

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVT-DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .+.+++..++..+..+....+.++|+.+++|++..+.+.+.. ...++..++.+++|+++||+ ||||.+.++.++.+++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            344444455555666666778889988889999999999875 55678899999999999999 9999888776665555


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+........+                    .+...+.+..++..+..|...+...++..+..+++.      +++.+++
T Consensus       303 ~l~~~~l~~~~--------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl  356 (491)
T PRK11010        303 NAGYWLLSITD--------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFAL  356 (491)
T ss_pred             HHHHHHHHhcc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHH
Confidence            43332211100                    113333444455444445444556777888888887      7888999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .+...++|..+++.+.|++.+..||+..|.+.++..+++++.....++
T Consensus       357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999889999999999999999888888887777666544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.22  E-value=1.2e-10  Score=122.81  Aligned_cols=157  Identities=19%  Similarity=0.139  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML  109 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~  109 (575)
                      +.....+..........+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..+.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence            33344444555556677899999999999999999999999999999999999999998 99999988876553332222


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      ... .                      .+...+.+..++.++..+...+..++++.|.+|+++      |++.+++.+..
T Consensus       322 ~~~-~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~  372 (405)
T TIGR00891       322 FAI-G----------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQL  372 (405)
T ss_pred             HHh-C----------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHH
Confidence            111 0                      123445555556666556666777889999999988      99999999999


Q ss_pred             HHHhHHHHHHHHhhhccccc-chhHHHH
Q 008182          190 ISLGTLMAVTVLVYIQDEIS-RSVGYGI  216 (575)
Q Consensus       190 ~~ig~~l~~~i~~~l~~~~~-~~~~f~~  216 (575)
                      .++|..++|.+.|++.+..| |+..|..
T Consensus       373 ~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       373 GNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            99999999999999999888 8776654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.21  E-value=2.5e-10  Score=122.45  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HH
Q 008182           31 LGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG-ML  109 (575)
Q Consensus        31 ~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~-l~  109 (575)
                      +...++....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.++++.++..+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3444456677788889999999988999999999888888899999999999999999 999988876554433221 11


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      .....  .                   .+.....+..++.+++.+...+...+++.|.+|++.      |++++++.+..
T Consensus       323 ~~~~~--~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~  375 (434)
T PRK15075        323 SWLVA--A-------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSL  375 (434)
T ss_pred             HHHHc--C-------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHH
Confidence            11111  0                   112223333444555666666666778899999998      99999985554


Q ss_pred             HH-HhHHHHHHHHhhhcccccch
Q 008182          190 IS-LGTLMAVTVLVYIQDEISRS  211 (575)
Q Consensus       190 ~~-ig~~l~~~i~~~l~~~~~~~  211 (575)
                      .+ +++.++|.+.+++.+..|++
T Consensus       376 ~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        376 ATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHhhhHHHHHHHHHHhcCCc
Confidence            44 46788999999999988853

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.20  E-value=3.9e-10  Score=120.81  Aligned_cols=169  Identities=15%  Similarity=0.070  Sum_probs=112.0

Q ss_pred             HHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-Hh
Q 008182           35 LCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAM-VT  113 (575)
Q Consensus        35 ~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~-~~  113 (575)
                      ++....+|++.+++|.|+.+++|++..+.+...++......+++++.|+++||+ |||+.+.++.++.++....... ..
T Consensus       253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T PRK10406        253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ  331 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344778888999999999999999999999988888888889999999999998 9999887766544333322211 11


Q ss_pred             hhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHH-
Q 008182          114 KLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISL-  192 (575)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i-  192 (575)
                      ...                     +....+....+...+.+...+....+.+|.+|++.      |++++|+.+...++ 
T Consensus       332 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~  384 (432)
T PRK10406        332 NVS---------------------SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANAL  384 (432)
T ss_pred             cCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHH
Confidence            100                     11111111111222223333456677899999999      99999997766553 


Q ss_pred             hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          193 GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       193 g~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      ++...|.+.+++.....|...+++.++..+++++..++.
T Consensus       385 ~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        385 FGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            355588888866443336666666666666655555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.20  E-value=2.1e-10  Score=123.75  Aligned_cols=172  Identities=10%  Similarity=-0.020  Sum_probs=135.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHH--HH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIFA--AV  101 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~--~~  101 (575)
                      |.++..++..++..++++....+++.|+.+ +|++..+.+.+.++..++..++++++|+++||. .++|+...++.  +.
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            446666677777778888888899999875 799999999999999999999999999999984 14444444433  22


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..++.+++.+.                        .+...+++.+++.|++.+...+...+++.|.+|+++      +++
T Consensus       320 ~~l~~ll~~~~------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~  369 (455)
T TIGR00892       320 NGLTHLLCALA------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSS  369 (455)
T ss_pred             HHHHHHHHHHh------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------Hhh
Confidence            33333343333                        135567788889999999988999999999999887      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccc-cchhHHHHHHHHHHHHHHH
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~-~~~~~f~~~~~~~~~~~~~  227 (575)
                      .+++++...++|..+||.++|++.+.. +|+..|++.++..+++.+.
T Consensus       370 ~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       370 AVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999999999999999999998877 5999999888776665554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=3.2e-10  Score=121.90  Aligned_cols=166  Identities=11%  Similarity=0.028  Sum_probs=119.7

Q ss_pred             HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           47 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        47 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      +..++..+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++..++.+++++...... .       
T Consensus       305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------  375 (481)
T TIGR00879       305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV-T-------  375 (481)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc-C-------
Confidence            334444557899998899999999999999999999999998 9999999998888887776664311010 0       


Q ss_pred             CcccccCccchhhHHH-HHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          127 ATHTCEQASGFQMGVL-YIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                         . ... ......+ ....+..+.+.+ ..+....++.|.+|++.      |++++++.+.+.++|.+++|.+.+++.
T Consensus       376 ---~-~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~  443 (481)
T TIGR00879       376 ---G-SSK-SSGNVAIVFILLFIAFFAMG-WGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTML  443 (481)
T ss_pred             ---C-ccc-chhHHHHHHHHHHHHHHHcc-ccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0 000 0012222 222222233333 34666777799999888      999999999999999999999999999


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          206 DEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       206 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +..+|++.|++.++..+++.+..++..+
T Consensus       444 ~~~~~~~~f~~~~~~~~~~~i~~~~~~~  471 (481)
T TIGR00879       444 ESIGVGGVFIFFGGLNVLGLIFVYFFLP  471 (481)
T ss_pred             HhcCccceehhHHHHHHHHHHHHheecc
Confidence            8889999999888777776666555444

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.19  E-value=2.4e-10  Score=122.77  Aligned_cols=179  Identities=16%  Similarity=0.024  Sum_probs=123.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.+|...+..++.....+++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ |+++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            3466666677777777888999999999998999999999999999999999999999999998 765433333322222


Q ss_pred             H---HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          105 G---TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       105 ~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .   ..++...   +.                   .+.....+..++.|.+.............|.+|++.      |++
T Consensus       330 ~~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  381 (438)
T TIGR00712       330 VTIAVIVYWMN---PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGT  381 (438)
T ss_pred             HHHHHHHHHhc---CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eee
Confidence            1   1111111   10                   112222333334444322222222345678889888      999


Q ss_pred             hhhhhhhhHHHhH-HHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          182 FFSRFFFFISLGT-LMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       182 ~~~~~~~~~~ig~-~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      +.++.+...++|+ .++|.+.|.+.+..||...|++.++..+++.+..++..
T Consensus       382 ~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       382 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             ehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888875 68999999999999999999887776666666555443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.1e-09  Score=112.86  Aligned_cols=178  Identities=13%  Similarity=0.112  Sum_probs=145.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +.++..++..++...+.|...+++.+++.+..|++.+..+++...|.++..++.+++|+++||  +.|+++.....++++
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~  288 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL  288 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence            457788888999999999999999999999999999999999999999999999999999999  788888888888887


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ..+.+.+..+                       +.....+..++.|+..+........-+++ ..++.      ++.+.+
T Consensus       289 ~~l~l~~~~~-----------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~------~~~a~s  338 (394)
T COG2814         289 ALLALTFTGA-----------------------SPALALALLFLWGFAFSPALQGLQTRLAR-LAPDA------ADLAGS  338 (394)
T ss_pred             HHHHHHHhcc-----------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCc------hHHHHH
Confidence            7776665532                       23444455555666665554544555555 33445      789999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR  234 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  234 (575)
                      ++..+.|+|..+|..++|.+.+++|+....++.++..+.++++.+...++
T Consensus       339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999888888877665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.15  E-value=5.3e-10  Score=107.57  Aligned_cols=172  Identities=15%  Similarity=0.118  Sum_probs=136.4

Q ss_pred             CCCCCCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 008182           15 PADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT   94 (575)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~   94 (575)
                      |.....+...+.+|.+.++.++-....+=..+.-+.+.++++|+|+..++.+.+..+..+.+.+|+.|.++||+ ||+-.
T Consensus       254 pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~  332 (459)
T KOG4686|consen  254 PKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLW  332 (459)
T ss_pred             cccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceeh
Confidence            33334455667899998888887777766667788899999999999999999999999999999999999999 99988


Q ss_pred             HHHHHHHHHH-HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCCh
Q 008182           95 IAIFAAVQTL-GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDE  173 (575)
Q Consensus        95 ~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~  173 (575)
                      .+.+..+..+ +-.++.++                          ...=+++..++|+.......+..+.++...|+++ 
T Consensus       333 wv~~a~~~tl~~H~~l~Ft--------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q-  385 (459)
T KOG4686|consen  333 WVASACILTLLGHSGLFFT--------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ-  385 (459)
T ss_pred             hHHHHHHHHHHHhhhHHhh--------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH-
Confidence            8777655444 44555443                          2223566778888888776668888999999988 


Q ss_pred             HhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccccc---chhHHHHHHH
Q 008182          174 KEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS---RSVGYGICSV  219 (575)
Q Consensus       174 ~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~---~~~~f~~~~~  219 (575)
                           .|++++..+...|+|-++-|++.|.+.+.-|   |--.|.+...
T Consensus       386 -----LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  386 -----LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             -----hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence                 9999999999999999999999999988655   4444544433

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.15  E-value=4.8e-12  Score=137.91  Aligned_cols=197  Identities=17%  Similarity=0.241  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML  109 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~  109 (575)
                      +++..+.. ...+++.....+-+.++++++++++|++.+.+-++..+..++..++++|. -|-|-+-++.+++++|.+++
T Consensus         8 ~~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    8 LCLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHH
Confidence            33334444 56666777777788999999999999999999999999999999999997 88888889999999999888


Q ss_pred             HHHhhhcccCCCCCCCc-----------Ccccc-------------------cCccchhhHHHHHHHHHHHHcccccccc
Q 008182          110 AMVTKLRQLRPRPCKET-----------ATHTC-------------------EQASGFQMGVLYIALYLIALGTGGLKSS  159 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~-----------~~~~~-------------------~~~~~~~~~~~~~~~~l~g~g~g~~~~~  159 (575)
                      ++    |.+..+++...           ....|                   +........+++++.++.|+|.....+.
T Consensus        86 ~l----Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tL  161 (539)
T PF03137_consen   86 AL----PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTL  161 (539)
T ss_dssp             ----------------------------------------------------------------------SSS-------
T ss_pred             hc----cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccc
Confidence            65    54433333110           11122                   1122223577889999999999999999


Q ss_pred             hhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc---------------------c-cchhHHHHH
Q 008182          160 VSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---------------------I-SRSVGYGIC  217 (575)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~---------------------~-~~~~~f~~~  217 (575)
                      -.+++=|..++++      -+...|+.+....+|.++|.++++.+...                     . .|+..|.+.
T Consensus       162 G~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~  235 (539)
T PF03137_consen  162 GITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLIC  235 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHH
Confidence            9999999998888      78889999999999999998888876431                     1 388888888


Q ss_pred             HHHHHHHHHHHHhcCcccccc
Q 008182          218 SVAMFMAIIIFLAGTKRYRYK  238 (575)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~  238 (575)
                      +...++..+.++.+.|+.+..
T Consensus       236 g~~~~l~aipl~~FPk~lp~~  256 (539)
T PF03137_consen  236 GILLFLSAIPLFFFPKKLPGT  256 (539)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHcCCccCCCc
Confidence            777777666666666655443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.15  E-value=1.1e-09  Score=118.01  Aligned_cols=183  Identities=15%  Similarity=0.091  Sum_probs=151.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY--KTIAIFAAVQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~~  102 (575)
                      |.....++..++-+-+..++......|.++.+|++..+...+..+..+...+++++.|++.||+ |.|  +++++++++.
T Consensus       281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLILW  359 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHH
Confidence            5566677777887788888889999999999999999999999999999999999999999999 999  8988888776


Q ss_pred             HHHHHHHHH--HhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          103 TLGTGMLAM--VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       103 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      .+..+...+  .++.                  ....+.+.+++.-++.|+..|...+..-++.+++.|+++      .+
T Consensus       360 ~~i~~~g~~G~~~~~------------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~  415 (477)
T PF11700_consen  360 IIIPLYGLFGFWPSF------------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EA  415 (477)
T ss_pred             HHHHHHHHHHhhhcc------------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hh
Confidence            443332222  2110                  011235567777789999999999999999999999998      89


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcC
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      ..||++.......+.+||++.|.+.+.++ .|..+....++.+++++++....
T Consensus       416 efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~  468 (477)
T PF11700_consen  416 EFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD  468 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999886 88888888888777777765543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=7.1e-10  Score=120.10  Aligned_cols=158  Identities=11%  Similarity=0.045  Sum_probs=125.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+...+...++..+++.......|.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++.++..+..+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3455666667777777665566778888878999999999999988888888889999999999 999999999887777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..++.+...  .                   .+...+.+..++.|++.+...+..+.+..+.+|++.      ++..++
T Consensus       340 ~~~~~~~~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~  392 (471)
T PRK10504        340 VSLLFMLVAL--L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNS  392 (471)
T ss_pred             HHHHHHhccc--c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHH
Confidence            7666554311  0                   123334445667788888888888888889999888      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISR  210 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~  210 (575)
                      +.+....+|..+|+.++|.+.+..++
T Consensus       393 ~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        393 LLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999988776655

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.13  E-value=1.3e-08  Score=111.68  Aligned_cols=203  Identities=13%  Similarity=0.205  Sum_probs=153.2

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .+.+..++....+......++.....+-+.+.++++.++.|++.+.+-++..+...+..+.+-|. =|-|.+-++.++++
T Consensus        95 ~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~  173 (735)
T KOG3626|consen   95 IKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMG  173 (735)
T ss_pred             cchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHH
Confidence            34455555555554444457888888889999999999999999999999999999999999998 88889999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCc----------------------cccc-----C----ccch-hhHHHHHHHHHHHH
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETAT----------------------HTCE-----Q----ASGF-QMGVLYIALYLIAL  151 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~----------------------~~~~-----~----~~~~-~~~~~~~~~~l~g~  151 (575)
                      +|.++.++    |.+..+|+.....                      ..|.     .    .... -+.+++++.++.|+
T Consensus       174 lgsll~al----PHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI  249 (735)
T KOG3626|consen  174 LGSLLFAL----PHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI  249 (735)
T ss_pred             HHHHHHhC----hHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc
Confidence            99988875    3222222211110                      0111     0    1111 23478899999999


Q ss_pred             cccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc-------------------ccchh
Q 008182          152 GTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE-------------------ISRSV  212 (575)
Q Consensus       152 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~-------------------~~~~~  212 (575)
                      |.....+.-.+++=|...+++      -...+|+.+....+|.++|.++++++...                   ..|+.
T Consensus       250 G~Tpi~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWl  323 (735)
T KOG3626|consen  250 GATPIFTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWL  323 (735)
T ss_pred             CCCCCccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHH
Confidence            999999999999988887777      78889999999999999999999887431                   13888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCccccc
Q 008182          213 GYGICSVAMFMAIIIFLAGTKRYRY  237 (575)
Q Consensus       213 ~f~~~~~~~~~~~~~~~~~~~~~~~  237 (575)
                      .|++++.+.++..+.++++.++.++
T Consensus       324 GFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  324 GFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccCcc
Confidence            8988888888888887777665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.13  E-value=2.4e-09  Score=113.65  Aligned_cols=172  Identities=10%  Similarity=-0.104  Sum_probs=128.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++...+..++.....+......|.|+.+++|+++.+.+.......++..++.++.|+++||+ |||+.+.++.++..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            455555555555565666667788898889999999999888878888889999999999999 9999999998888888


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .++..+....+.                   .+...++++.++.++|.+...+.......+. ++++      |++..+.
T Consensus       295 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~  348 (406)
T PRK15402        295 LLLAALATVISS-------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAA  348 (406)
T ss_pred             HHHHHHHHHccc-------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHH
Confidence            777766521111                   2355566778888888887766665554433 3455      8999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMA  224 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~  224 (575)
                      +++...+|..+|+.+.+++.+..++....+...+..++.
T Consensus       349 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        349 MGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999999999988777665444444333333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.12  E-value=7.1e-10  Score=118.08  Aligned_cols=166  Identities=8%  Similarity=-0.021  Sum_probs=118.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH-HHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVG-TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT-IAIFAAVQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~-~~~~~~~~  102 (575)
                      +.+|...+..+|....++++.+++|.|+++ ..|.+..+.+.......++..++.+++|+++||+ |||+. +.+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            456777788888888999999999999987 3577888999999999999999999999999998 87774 34444344


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++..+....   +                     +....+++..+.++|.....+.......+.+|++.      |+++
T Consensus       321 ~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a  370 (412)
T TIGR02332       321 AAGWLLASAT---D---------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIA  370 (412)
T ss_pred             HHHHHHHHhc---C---------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHH
Confidence            4433222111   1                     01111222223333333333333444566778777      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAM  221 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~  221 (575)
                      +++.+...++|++++|.+.+.+.+..| |++.|++.++..
T Consensus       371 ~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       371 IAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             HHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            999999999999999999999999875 999998776643

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.12  E-value=2e-08  Score=107.41  Aligned_cols=163  Identities=15%  Similarity=0.162  Sum_probs=117.4

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc--cc--hHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF--LG--RYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  121 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~--~G--r~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  121 (575)
                      .....|+++++|+++++.....+...+- ...-++.|.++|-+  .|  ||.-++++.++.+++...++..+...     
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-----   83 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-----   83 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-----
Confidence            4456788999999999988766655554 45678889999986  34  44455556665555555454432100     


Q ss_pred             CCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH
Q 008182          122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  201 (575)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~  201 (575)
                                     .......+..++..+|....-.+..++..|...++...    |+...+..+.+..+|+.++..++
T Consensus        84 ---------------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~  144 (433)
T PF03092_consen   84 ---------------SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLS  144 (433)
T ss_pred             ---------------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhh
Confidence                           12334455667778888888888889999987655533    78888888889999999999999


Q ss_pred             hhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          202 VYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       202 ~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      |.+.+..+++..|.+.++...+..+..++..+
T Consensus       145 G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  145 GPLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             hhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999999999999887776666555555444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.10  E-value=2.1e-09  Score=113.51  Aligned_cols=176  Identities=16%  Similarity=0.087  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHH-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMG-TSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      .++..+...++...+.+....+.++|+.+ +|+++++.+++...... ...++.+++|++.||+ |+|+.+.++..+..+
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            45556666677777777777888899975 79999999999887764 5667789999999999 999999888766544


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCC-CChHhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~  183 (575)
                      ...+.........                  ..+....+....+.+++.+...+...+...+..++ +.      +++.+
T Consensus       287 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~  342 (390)
T TIGR02718       287 LALLWFAQAAFWL------------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDV  342 (390)
T ss_pred             HHHHHHHHHHccc------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHH
Confidence            3322221111000                  01122333444455566666667777777676665 56      89999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      +..+...++|..++|.++|++.+..||+..|++.++..+++.+.
T Consensus       343 ~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       343 TAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.09  E-value=2.2e-09  Score=114.56  Aligned_cols=148  Identities=18%  Similarity=0.085  Sum_probs=108.3

Q ss_pred             HHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccC
Q 008182           40 STMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLR  119 (575)
Q Consensus        40 ~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~  119 (575)
                      ..+.+..++|.|+.+ .|.++.+.+.+.+...++..++.++.|+++||+ |||+.+..+.++..++.++....   +.  
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~---~~--  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRI---PQ--  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHH---cc--
Confidence            334466788999886 599999999999999999999999999999999 99999988887766655444322   11  


Q ss_pred             CCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHH
Q 008182          120 PRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVT  199 (575)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~  199 (575)
                                       .....+....+..+.+..+..+..+.++.|.+|++.      |++++++.+...++|+.++|.
T Consensus       319 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~  375 (426)
T PRK12307        319 -----------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSM  375 (426)
T ss_pred             -----------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHH
Confidence                             011112122222223333334556677899999888      999999999999999999999


Q ss_pred             HHhhhcccccchhHHHHH
Q 008182          200 VLVYIQDEISRSVGYGIC  217 (575)
Q Consensus       200 i~~~l~~~~~~~~~f~~~  217 (575)
                      +.+++.+..|+....++.
T Consensus       376 ~~g~l~~~~g~~~~~~~~  393 (426)
T PRK12307        376 AATWLGITMGLGAALTFI  393 (426)
T ss_pred             HHHHHHHcccHHHHHHHH
Confidence            999999988866544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.09  E-value=2.1e-09  Score=116.69  Aligned_cols=174  Identities=11%  Similarity=0.057  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHH-------HHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYK-------TIAIF   98 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-------~~~~~   98 (575)
                      .+|.+.+..++.....+....++|.|+.+++|++..+++.+.+++.++..++++++|+++||+ |||+       ...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            345555555555555566777899999999999999999999999999999999999999998 8762       22222


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhh
Q 008182           99 AAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ  178 (575)
Q Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~  178 (575)
                      .++..+..++.+..                        .+.....+..++.+++.+...+...++..+..+ +.      
T Consensus       332 ~~l~~i~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------  380 (476)
T PLN00028        332 QTLGGVFCIWLGRA------------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------  380 (476)
T ss_pred             HHHHHHHHHHhccc------------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------
Confidence            22222222222221                        112333333444455444344444555555443 45      


Q ss_pred             hhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          179 MAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       179 r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      |+...++.+.+.++|+.++|.+.+ ..+..+|+..|++.++..+++.++.++.+
T Consensus       381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            899999988777888888876654 23345699999998887777776665554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.09  E-value=2.6e-09  Score=112.46  Aligned_cols=169  Identities=8%  Similarity=-0.012  Sum_probs=131.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++....+....++++.|+. +.|+++.+.+.+.+...++..+..++.|++.||+ |+|+.+.++++...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45666666667666777777788899996 5899999999999988888889999999999998 999999999988888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.++.+.++                        +.+.+++..++.|++.+...+....+..+. ++++      +++..+
T Consensus       283 ~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~  331 (382)
T PRK11128        283 RWGLMGSTT------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQA  331 (382)
T ss_pred             HHHHHHhhh------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHH
Confidence            777666552                        366677888889999888777777777665 4444      677777


Q ss_pred             hhh-hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          185 RFF-FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       185 ~~~-~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      .+. ....+|..+||.++|.+.+..|+ ..|+..+++.++++++
T Consensus       332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        332 LYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            765 45678889999999999998887 4566555555544433

>TIGR01272 gluP glucose/galactose transporter

Probab=99.07  E-value=2.3e-09  Score=109.53  Aligned_cols=161  Identities=10%  Similarity=0.044  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhc--CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGT--MHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .++...+..++-...--++..+++.|+.+.  +|+++.+.+...+.+..+..+++.+++++.||+ |+||.+.++..+..
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~  219 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence            344444444443334446678899999854  799999999999999999999999999999999 99999988887777


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++....   +.                     .. ...+.++.|++.+...|...+...+.++++.       +++.
T Consensus       220 ~~~~l~~~~---~~---------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~as  267 (310)
T TIGR01272       220 LLSIGAALT---HG---------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGS  267 (310)
T ss_pred             HHHHHHHHc---CC---------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhH
Confidence            766544432   11                     11 2235557899999999999998888887643       2333


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVA  220 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~  220 (575)
                      ++. ....+|+.+.|.+.|.+.|..|.+..|++..+.
T Consensus       268 ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       268 GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            443 467799999999999999988998888765543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.06  E-value=4.3e-09  Score=110.83  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      .+..+...++...+.+....++++|+.+.+|+++.+.+.+.+...++..++.++.|+++||+ |+|+.+.++..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444454455555667788899888999999999999999999999999999999998 99999998888888777


Q ss_pred             HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccc-cccCCCCChHhhhhhhhhhhh
Q 008182          107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFG-TDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      ++.....+                       +.....+..++.++|.....+...... .+..+++.      ++...  
T Consensus       280 ~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~--  328 (382)
T PRK10091        280 LMLFFFGG-----------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAAG--  328 (382)
T ss_pred             HHHHHHHh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHHH--
Confidence            55543211                       122334444445555444333333333 33333333      44432  


Q ss_pred             hhhhHHHhHHHHHHHHhhhccc-ccchhHHHHHHHHHHHHHHHHHh
Q 008182          186 FFFFISLGTLMAVTVLVYIQDE-ISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~-~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      .+...++|..+||.++|++.+. .+|+..+.+.++..+++......
T Consensus       329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            3556789999999999999885 68999999887666655444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.05  E-value=5.3e-09  Score=111.39  Aligned_cols=187  Identities=12%  Similarity=0.041  Sum_probs=128.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +..|.+.+..+|..-+|.+...++|.|+++.+  +.........+..+...+.+|++|+++||+ |++|++.++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            35788888888877777778789999998865  333333334455677889999999999999 999999999887777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCCh-----------
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDE-----------  173 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~-----------  173 (575)
                      +.......  .|.                ....+...+.+..+.+.++.|....++..++.+.||+++.           
T Consensus       329 ~~~~~~l~--lp~----------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~  390 (462)
T PRK15034        329 FSALLFLT--LPG----------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDE  390 (462)
T ss_pred             HHHHHHHH--hcc----------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchh
Confidence            66443332  121                0012345555555555555565566667778777774100           


Q ss_pred             ----HhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccc-cchhHHHHHHHHHHHHHHHHHhcC
Q 008182          174 ----KEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI-SRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       174 ----~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                          +.+++-+...|+......+|+++.|.+.+...+.. ++...|+...+..+++.++.+...
T Consensus       391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence                00113567778888889999999998877776654 488889888888777777665543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.04  E-value=1.9e-09  Score=111.83  Aligned_cols=155  Identities=13%  Similarity=0.089  Sum_probs=128.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhH-HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIA-VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |.++..+...++....++... ...|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            445566666666666666666 6778888777999999999999999999999999999999998 99999988877777


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++..+..+...                       +...+++..++.|++.+...+...+++.|.+|+++      |++.+
T Consensus       289 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~  339 (365)
T TIGR00900       289 LAILVVGLTPP-----------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVF  339 (365)
T ss_pred             HHHHHHHhhch-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHH
Confidence            76666655411                       24556777888999999888999999999999888      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS  209 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~  209 (575)
                      ++.+...++|..++|.++|++.+..|
T Consensus       340 ~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       340 GAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999987543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.04  E-value=4.9e-09  Score=113.44  Aligned_cols=178  Identities=15%  Similarity=0.036  Sum_probs=122.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH--------H
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTI--------A   96 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~--------~   96 (575)
                      +.+|...+..++....++....++|.|+.+.+|++..+.++..++..++..++.+++|+++||+ ++|+..        .
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~  339 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF  339 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence            4678888888999999999999999999999999999999999999999999999999999997 644211        1


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      .+......+..++..... .                    .+....++...+.+.+.+...+.......|..|. .    
T Consensus       340 ~~~~~~~~~~~~~~~~~~-~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~----  393 (465)
T TIGR00894       340 NGIGGLGPGIFAYALPYL-S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F----  393 (465)
T ss_pred             HHHHHHHHHHHHHHHHHc-C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H----
Confidence            111111111111111100 0                    0122233333344444444444444444555543 4    


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhhcccc---cchhHHHHHHHHHHHHHHHHHhc
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYIQDEI---SRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~---~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                        ++...++.+...++|+.++|.+.|++.+..   +|+.+|++.++..+++.+.....
T Consensus       394 --~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       394 --LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence              899999999999999999999999987643   48888888887777766655443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.03  E-value=1.9e-09  Score=115.43  Aligned_cols=162  Identities=16%  Similarity=0.056  Sum_probs=123.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++..++++......+.|++..++ ++.+.+.+.....++..++.++.|+++||+ |||+++.++.++..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            456667777777777777666666666666666 566777788888899999999999999999 999999999888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHh-hhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~  183 (575)
                      +.++..+..                       .+...+++..++.+++.+...+...++++|..+.++.+. .+.++..+
T Consensus       300 ~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  356 (437)
T TIGR00792       300 GYLIFFFAG-----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVY  356 (437)
T ss_pred             HHHHHHHcc-----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHH
Confidence            776665531                       124455666777888888888888999999876432110 11278889


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccch
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRS  211 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~  211 (575)
                      ++.++...+|..+++.+.|++.+..||.
T Consensus       357 ~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       357 SVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999998777663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.03  E-value=4.5e-09  Score=111.17  Aligned_cols=171  Identities=13%  Similarity=0.057  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTM---HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      .++..+...++....+.......+.|+.+.+   +.+....+.+.+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus       216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~  294 (396)
T TIGR00882       216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM  294 (396)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence            3444555555555555455566788887765   55666778888888888889999999999999 9999999998888


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +++..+...++                        +...+++.+++.+++..........+..+..+++.      +++.
T Consensus       295 ~l~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~  344 (396)
T TIGR00882       295 SVRIIGSSFAT------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATI  344 (396)
T ss_pred             HHHHHHHHhcC------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEe
Confidence            88777665542                        25556777888888766554455556666677666      7776


Q ss_pred             hhh-hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          183 FSR-FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       183 ~~~-~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      .+. ++....+|..+++.++|++.+..||+.+|.+.++..++..++
T Consensus       345 ~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       345 YLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             ehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            666 567889999999999999999999999999877776655444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.02  E-value=1.6e-09  Score=112.82  Aligned_cols=162  Identities=14%  Similarity=0.060  Sum_probs=117.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH--HH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA--VQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~--~~  102 (575)
                      |.++.+.+..++.....+.+..+++.|+.+.+|++..+.+.+.+.+.++..++.++.|+++||..+||+.......  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4566667777777777778888999999999999999999999999999999999999999986244443322211  11


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.......   +.                   .+.....+..++.|+......+....+..|.+|++.      |+++
T Consensus       296 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  347 (379)
T TIGR00881       296 IVSLLVYWLN---PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTA  347 (379)
T ss_pred             HHHHHHHhcC---cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHH
Confidence            1111111111   11                   123334444555565544455555677899999888      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGY  214 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f  214 (575)
                      .++.+...++|..++|.+.|.+.+..||+..|
T Consensus       348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999998764

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.01  E-value=1.7e-07  Score=94.80  Aligned_cols=155  Identities=18%  Similarity=0.120  Sum_probs=107.4

Q ss_pred             HHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcc
Q 008182           50 TYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH  129 (575)
Q Consensus        50 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  129 (575)
                      ..+-++.|++..|.+.+...-.+.+.+..++.|.++||+ ||||..++..+++++..+.--.                  
T Consensus        58 Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~------------------  118 (354)
T PF05631_consen   58 YALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS------------------  118 (354)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc------------------
Confidence            344467999999999999999999999999999999999 9999999999888887754322                  


Q ss_pred             cccCccchhhHHHHHHHHHHHHcccccccchhccc-cccCCCCChHhhhhhhhhhhhhh-hhHHHhHHHHHHHHhhhccc
Q 008182          130 TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFG-TDQFDEKDEKEKTQMAYFFSRFF-FFISLGTLMAVTVLVYIQDE  207 (575)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~l~~~i~~~l~~~  207 (575)
                             .++..++++|++.|++......+-.+.. .|+-...-+++.  .+.-++... ..+.+-.+++.+++-++.+.
T Consensus       119 -------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~--L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~  189 (354)
T PF05631_consen  119 -------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEW--LSDTFSLATFFGNGVVAIGAGVVANVLADW  189 (354)
T ss_pred             -------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH--HHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence                   2488899999999999999888777754 443222211111  333333322 22233334444455555555


Q ss_pred             cc--chhHHHHHHHHHHHHHHHHHhcC
Q 008182          208 IS--RSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       208 ~~--~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      .+  ...+|..+.+..+++.++.....
T Consensus       190 ~~~g~vaPF~~a~~~l~~~~~~I~~~W  216 (354)
T PF05631_consen  190 FGFGPVAPFDAAIVLLAVAAVLILKTW  216 (354)
T ss_pred             hCCCCcchHHHHHHHHHHHHHHHHhcc
Confidence            44  47899888877776666544433

>PRK10054 putative transporter; Provisional

Probab=99.00  E-value=4.7e-09  Score=111.12  Aligned_cols=174  Identities=10%  Similarity=-0.017  Sum_probs=131.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhh--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVG--TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      |.++...+..++..+.+.......+.|+..  +.+.+....+.+...........+++.|++.||+ ++|+.+.+++.+.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            455556666666666655555666777653  4456666777777777777777788999999998 9999999998888


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .++.....+..+                       +.+.+.++.++.++|.+...|.....+.+..|++.      |++.
T Consensus       285 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~  335 (395)
T PRK10054        285 VIGLVGFIFSGN-----------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASY  335 (395)
T ss_pred             HHHHHHHHHcch-----------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceeh
Confidence            888766655311                       24445667788999988888888888999998887      8888


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  229 (575)
                      ++... ...+|..+||.++|++.+..|....|++.++...++++...
T Consensus       336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            88654 56689999999999999999999888886666665555554

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=1.3e-08  Score=108.01  Aligned_cols=173  Identities=13%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      ++..++..++...+.+....+.++|+.+++|+++.+.+++..... .+..++.+++|++.||+ |||+.+.++..+..+.
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            444444444444433333344556777889999999999887654 45788999999999999 9999888777666655


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHH----HHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL----YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+........+.                    +.+.+++..    +..+++.+...+....++.+.+|.++      +  
T Consensus       290 ~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~--  341 (402)
T PRK11902        290 NLGYWVLAVTPK--------------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y--  341 (402)
T ss_pred             HHHHHHHHhcCC--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H--
Confidence            443322111111                    133344333    33455566666666677777766444      3  


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                        +++....++|..+++.++|++.+..||+..|.+.++..+++.++...
T Consensus       342 --~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        342 --ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence              44444556777766778999999999999999988877776555443

>TIGR00896 CynX cyanate transporter

Probab=98.99  E-value=8e-09  Score=107.53  Aligned_cols=156  Identities=15%  Similarity=-0.001  Sum_probs=118.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.+.+..++....++....++|.|+++ .|++..+.+.+.+.+.++..+++++.|+++||+-+||+.+.++.++.++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~  275 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLV  275 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHH
Confidence            445656666666777788888899999975 6999999999999999999999999999999983456677777777777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.+++.+..+                        .... ...++.|++.+...+...+.+.+..++++.     ++..++
T Consensus       276 ~~~~~~~~~~------------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~  325 (355)
T TIGR00896       276 GLCGLLFAPM------------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSA  325 (355)
T ss_pred             HHHHHHHhhh------------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHH
Confidence            7766655421                        1111 234677999988888877777665554331     688888


Q ss_pred             hhhhhHHHhHHHHHHHHhhhccccc-ch
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEIS-RS  211 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~-~~  211 (575)
                      +.+...++|..++|.+.|++.+..| |.
T Consensus       326 ~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       326 MAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            8888889999999999999988775 44

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.99  E-value=1.7e-08  Score=105.80  Aligned_cols=163  Identities=8%  Similarity=0.033  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++...+...+....++....+.|.|+.+++|.++.+.+.+.....++..++.++.|++.||+ |||+.+.++..+..++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~  285 (385)
T TIGR00710       207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS  285 (385)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            345555555555666677777888899989999999999999999999999999999999999 9999999888887777


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+++......+.                   .....+++..++.|++.+...+.......|.+| ++      |+++.++
T Consensus       286 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  339 (385)
T TIGR00710       286 AVLLEITAILGL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASAL  339 (385)
T ss_pred             HHHHHHHHHhcc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHH
Confidence            766655421110                   123344555667888888888888888888776 45      8888998


Q ss_pred             hhhhHHH-hHHHHHHHHhhhcccccchhHHHH
Q 008182          186 FFFFISL-GTLMAVTVLVYIQDEISRSVGYGI  216 (575)
Q Consensus       186 ~~~~~~i-g~~l~~~i~~~l~~~~~~~~~f~~  216 (575)
                      .+..... |...++ +.+.+.+..+|...+..
T Consensus       340 ~~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       340 FGTLRLVLGAIVGY-LVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHH-HHHhccccChHHHHHHH
Confidence            7776655 455555 45566555555544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.98  E-value=6.1e-09  Score=113.87  Aligned_cols=169  Identities=14%  Similarity=0.087  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHH------------HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           32 GIELCERLSTMGIAVNLVTYLVGTMHLPSATSAN------------IVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        32 ~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      ...++..+.+|++..++|.+++ ++|++..+.+.            ...+..++..++.+++++++||+ |||++++++.
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~  372 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF  372 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence            3445566788888888888885 57877543221            12233445556788999999999 9999999988


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      .+.+++.++.++......                    +...+....+...++..+..+....+.+|.+|++.      |
T Consensus       373 ~~~~~~~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R  426 (502)
T TIGR00887       373 FILTVLFFVLGFAYNHLS--------------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------R  426 (502)
T ss_pred             HHHHHHHHHHHHHHHhcc--------------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------H
Confidence            887777666655421000                    01111111111222222234556677899999999      9


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhccc----------ccchhHHHHHHHHHHHHHHHH
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQDE----------ISRSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~----------~~~~~~f~~~~~~~~~~~~~~  228 (575)
                      +++.++.+....+|++++|.+.+++.+.          .++...|++.++..+++.+..
T Consensus       427 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       427 STAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998773          334556776666655554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.97  E-value=2e-08  Score=108.89  Aligned_cols=157  Identities=10%  Similarity=-0.026  Sum_probs=112.3

Q ss_pred             HHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcc
Q 008182           50 TYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH  129 (575)
Q Consensus        50 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  129 (575)
                      +++.+++|.+..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.++++.....+.            
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------  361 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------  361 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence            344457898888777777778888899999999999999 9999999999998888877765421111            


Q ss_pred             cccCccchhhHHHHHHHHHHHHcccc-cccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhh-----
Q 008182          130 TCEQASGFQMGVLYIALYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY-----  203 (575)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~-----  203 (575)
                             . ......+..+.+.+.+. ..|....+++|.+|++.      |++++++.+...++|..+++.+.+.     
T Consensus       362 -------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~  427 (479)
T PRK10077        362 -------P-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKNS  427 (479)
T ss_pred             -------c-cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence                   0 11222333344443332 34677889999999888      9999999999888888888655554     


Q ss_pred             -hcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          204 -IQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       204 -l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                       +.+..+|+..|++.++..+++.+..++..+
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (479)
T PRK10077        428 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  458 (479)
T ss_pred             chhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence             445678888888877666666555444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.97  E-value=3.7e-09  Score=114.71  Aligned_cols=156  Identities=13%  Similarity=0.062  Sum_probs=127.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++..+.+++...++|.|+++.+|+++.+.++......++..++.+++|++.||+ |||+.+.++..+.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4556667777778888888889999999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..+..+... +.                   .+...+....++.|+|.+...+.......+..|+++      |+++.+
T Consensus       334 ~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~  387 (485)
T TIGR00711       334 GFYWRAFTFT-PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSS  387 (485)
T ss_pred             HHHHHhccCC-CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHH
Confidence            7776653211 11                   124445566778899988877777777778788777      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhccc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDE  207 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~  207 (575)
                      +.+...++|+.+|+.+.+.+.+.
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=5.5e-09  Score=106.95  Aligned_cols=176  Identities=14%  Similarity=0.134  Sum_probs=143.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .+...++..+.-+=+.-++......|...++|+++.+...+.....+..++++++.|+|.||+ |.|+++.+++++..+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            455566666665555556777788899999999999999999999999999999999999999 9999999999888877


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+..-+.                        ++...+++.-++.|+..|...+..-++.++..|+++      -++.||+
T Consensus       332 ~~~~~~~------------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFgl  381 (438)
T COG2270         332 ALYLIFL------------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGL  381 (438)
T ss_pred             HHHHHHc------------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeeh
Confidence            6555443                        123345666678899999999999999999999998      8999999


Q ss_pred             hhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcC
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      +.+.....+.+||...+.+.+.++ -|..+....++..+++++++..+
T Consensus       382 yaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~  429 (438)
T COG2270         382 YALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK  429 (438)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence            999999999999999999988665 67777666666666666655443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.96  E-value=1.1e-08  Score=111.46  Aligned_cols=173  Identities=15%  Similarity=0.087  Sum_probs=143.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      +..++...++..+....+...+|.+.++.+|.++...|++.+++.++..++.++.+++.+|+ ++++.+..+.++++++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            33344444455555555667789999999999999999999999999999999999999998 99999999998888888


Q ss_pred             HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh
Q 008182          107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  186 (575)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  186 (575)
                      +.++++.+                        .+..+++.++.|++........++.+....|++.      ||+.++++
T Consensus       299 ~~lal~~~------------------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~  348 (524)
T PF05977_consen  299 LLLALSPS------------------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIY  348 (524)
T ss_pred             HHHhcchH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHH
Confidence            88887632                        5566777788888888887888888888899988      99999999


Q ss_pred             hhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          187 FFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       187 ~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      .+....+..+|..+.|.+.+..|.+..+.++++..+++.++...
T Consensus       349 ~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~  392 (524)
T PF05977_consen  349 QMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR  392 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877766555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.95  E-value=7e-09  Score=113.22  Aligned_cols=154  Identities=12%  Similarity=-0.001  Sum_probs=128.4

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+....+..++....+++...+++.|+++.+|+++.+++.....+.++..++.++.|++.||+ |||+.+..+.++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4455666777777788888888999999999999999999999999999999999999999999 999999989888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +.+++.....  .                   .+.....+..++.|+|.|...+.....+.+..|+++      ++.+.+
T Consensus       338 ~~~~l~~~~~--~-------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~  390 (495)
T PRK14995        338 SFYGLAMTDF--S-------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGA  390 (495)
T ss_pred             HHHHHHHhcC--C-------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHH
Confidence            7766654311  0                   123345566788899999888888888888888888      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      .++...++|+.+|+.+.+.+.+
T Consensus       391 ~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        391 IETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988854

>TIGR00895 2A0115 benzoate transport

Probab=98.95  E-value=6.5e-09  Score=109.12  Aligned_cols=147  Identities=13%  Similarity=0.039  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      ..+.+.+..++....++....++| ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+....+ ..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~-~~~~  327 (398)
T TIGR00895       251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLL-GAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHH-HHHH
Confidence            344455556666777777777777 66678899999999999999999999999999999999 99855444333 3333


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      ..++....                       .+...+++..++.|++.+...+...+++.|.+|+++      |++++++
T Consensus       328 ~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  378 (398)
T TIGR00895       328 AVLVGSTL-----------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGW  378 (398)
T ss_pred             HHHHHHHh-----------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHH
Confidence            22222210                       124456667778889888888999999999999888      9999999


Q ss_pred             hhhhHHHhHHHHHHHHhhh
Q 008182          186 FFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l  204 (575)
                      .+...++|..++|.++|++
T Consensus       379 ~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       379 AIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999876

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.93  E-value=4e-08  Score=103.97  Aligned_cols=166  Identities=10%  Similarity=-0.035  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++..++..++...+.++...++++++.+++|+++.+.+.+...+.++..++.++.|++.||. +|+..+....+...++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~  295 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence            455555555565566666667765555567899999999999999999999999999999996 5444343333333333


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .++.....                        +.+.+.+..++.|++.+...+...+++.+..|+ +      +++..+.
T Consensus       296 ~~l~~~~~------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~  344 (394)
T PRK10213        296 LVLTLWGS------------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-Q------AEKAGSI  344 (394)
T ss_pred             HHHHHHhh------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-c------HHHHHHH
Confidence            33333221                        244566677888999988888888888887764 3      4455666


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFM  223 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~  223 (575)
                      .....++|..+|+.++|++.+..|++..++..++..++
T Consensus       345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence            66777899999999999999999999888877655443

>PRK10133 L-fucose transporter; Provisional

Probab=98.92  E-value=2.3e-08  Score=107.40  Aligned_cols=167  Identities=17%  Similarity=0.141  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHh-hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYL-VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      ++...+..++.....++...+++.|+ ++.+|+++.+.+.....+.++..++++++|++.||+ |||+++..+.++..++
T Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            44444555666666666777888896 567899999999999999999999999999999999 9999998887776665


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      ..+..+.   +.                     . ..+....+.|++.+...|...+...+.++++       .+.+.++
T Consensus       339 ~~~~~~~---~~---------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l  386 (438)
T PRK10133        339 CLISAFA---GG---------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF  386 (438)
T ss_pred             HHHHHHc---CC---------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhH
Confidence            5444333   11                     1 1244567789999999999999999987753       3445555


Q ss_pred             hhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIII  227 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~  227 (575)
                      ..+ ..+|+.++|.+.|++.+..| -+..|+++.+..+..+..
T Consensus       387 ~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        387 IVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            433 44688889999999999887 788888766655544444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=1.9e-08  Score=106.76  Aligned_cols=154  Identities=8%  Similarity=0.037  Sum_probs=112.9

Q ss_pred             hHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Q 008182           44 IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPC  123 (575)
Q Consensus        44 ~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  123 (575)
                      ...++|.|+++..+ ++.+.+++.++..+....+..+.+++.||.++.++.+..+.++..++..+++++.+         
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---------  296 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---------  296 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---------
Confidence            45677888876655 77888888887777666555555666665437677777888777777776665522         


Q ss_pred             CCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhh
Q 008182          124 KETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVY  203 (575)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~  203 (575)
                                     ...+.+...+.++|.+...|...+++.+..|+++      |++.+++++...++|..+||.++|+
T Consensus       297 ---------------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~  355 (400)
T PRK11646        297 ---------------LQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGW  355 (400)
T ss_pred             ---------------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHH
Confidence                           4445556677888888888888999999999988      9999999999999999999999999


Q ss_pred             hcccc---c-chhHHHHHHHHHHHHHHHH
Q 008182          204 IQDEI---S-RSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       204 l~~~~---~-~~~~f~~~~~~~~~~~~~~  228 (575)
                      +.+..   + ...+|++.++..+...+..
T Consensus       356 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        356 LFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            98864   2 3455555555545444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.89  E-value=2.2e-08  Score=120.56  Aligned_cols=165  Identities=12%  Similarity=0.080  Sum_probs=131.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCch-hhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA-TSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      +.++..++..++.....+....+++.|+.+.+|++.. +.+++.+...++..++.+++|+++||+ ++++.+.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            3445555555555566666778899999999999999 999999999999999999999999998 99999988888887


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.+++.+..                        +...+++..++.|++.+...+...+++.+..|++.      |++++
T Consensus       311 ~~~~~~~~~~------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~  360 (1146)
T PRK08633        311 LSLFLLPTAP------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVL  360 (1146)
T ss_pred             HHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhh
Confidence            7777666552                        25556677788899989888888999999999998      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcc-cccchhHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQD-EISRSVGYGICSVA  220 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~-~~~~~~~f~~~~~~  220 (575)
                      ++.++..++|..+++.+++.+.. ..++...|++.+.+
T Consensus       361 ~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        361 AANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999888877776644 23455555554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.87  E-value=2.2e-08  Score=120.50  Aligned_cols=183  Identities=13%  Similarity=-0.098  Sum_probs=133.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++..+.++.+..++|.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            4566777777777777778888999999999999999999999999999999999999999987 777766666655555


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCccccc--CccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCE--QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +.+.+++... .....  .   ......  .....+.+.++++.+++|++.+...+...+++.+.+|++.      |+++
T Consensus       304 ~~~~l~~~~~-~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v  371 (1140)
T PRK06814        304 FGLDLAFASS-SVPAE--P---AQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARV  371 (1140)
T ss_pred             HHHHHHhccc-ccccc--c---ccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceee
Confidence            5444433200 00000  0   000000  0000124556677888899999988889999999999999      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcc-cccchhHHHHHHHH
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQD-EISRSVGYGICSVA  220 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~-~~~~~~~f~~~~~~  220 (575)
                      ++..++..++|..+++++++.+.+ ..++...|++.++.
T Consensus       372 ~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        372 IAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999999999874 44666666654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.87  E-value=6.9e-08  Score=101.16  Aligned_cols=167  Identities=11%  Similarity=-0.051  Sum_probs=114.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchH---HHHHH-HHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRY---KTIAI-FAA  100 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~---~~~~~-~~~  100 (575)
                      |.+|.+.+..++....+|++..++|.|+++ .|++.. .+...........   +..++++||. .||   +.... ...
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567888889999999999999999999965 678764 5555555554444   4457888886 543   33232 333


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +.+++..+.+...                        +....++...+.+++.....+...++.+|.+|++.      |+
T Consensus       266 ~~a~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rg  315 (368)
T TIGR00903       266 LIAAFFLALAFEL------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HG  315 (368)
T ss_pred             HHHHHHHHHHHcc------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cC
Confidence            3333333333221                        12223333444556666666777889999999999      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHH
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  229 (575)
                      ++.|+.+...++|+.++|.+.+.+..  +.+..|.+.++..+++.+...
T Consensus       316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887763  666777776666666555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=5.3e-08  Score=104.24  Aligned_cols=163  Identities=19%  Similarity=0.163  Sum_probs=134.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+..++...++..+++....+..+.|++..+|.+ ...+.+..+..+...++.++.++++||+ |+||++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            56777888888888888888888888888888877 5677888889999999999999999999 999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh-hhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK-TQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~  183 (575)
                      +.++..+...                      .+.+.+++..++.|++.+...+...++++|..+.++.+.. ...+..+
T Consensus       303 ~~~~~~~~~~----------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~  360 (428)
T PF13347_consen  303 GFLLLFFLGP----------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYF  360 (428)
T ss_pred             HHHHHHHHHh----------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHH
Confidence            9988877731                      2477788888999999999999999999999985542211 1157778


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccch
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRS  211 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~  211 (575)
                      +.+.....+|..+++.+.+.+.+..|+.
T Consensus       361 s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  361 SVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            8899999999999999999886655543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.84  E-value=1.3e-07  Score=94.98  Aligned_cols=173  Identities=14%  Similarity=0.027  Sum_probs=139.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      +..|.+.+..-..++.+|.+..++|.++.+ .|+|..++|.+.+...+.+....+..-++++|...+|+..+.....+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            357777777778999999999999999885 5999999999999999999999999999999887888888888888888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      |.+-+.+.+   .                    +..  +...+++|+|.|...|....++.+..++.+.     -++..+
T Consensus       287 G~~G~~~~P---~--------------------~~~--~lw~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSg  336 (395)
T COG2807         287 GLVGLLLAP---G--------------------QLP--ILWALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSG  336 (395)
T ss_pred             HHHHHHHhh---h--------------------hHH--HHHHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHH
Confidence            888777762   2                    222  2224789999999999999999998766541     566666


Q ss_pred             hhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHH
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIF  228 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~  228 (575)
                      ..+-.+.+=.+.||.+.|++.|..| |+.+++..+...+...+.-
T Consensus       337 maQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G  381 (395)
T COG2807         337 MAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG  381 (395)
T ss_pred             HhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            7777777778889999999998765 9888876665554444443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.84  E-value=2e-08  Score=108.92  Aligned_cols=176  Identities=16%  Similarity=0.182  Sum_probs=150.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG--RYKTIAIFAAVQ  102 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G--r~~~~~~~~~~~  102 (575)
                      +.++.+.+...+..++++.-..+++.|.+ ..+++..+++.++++..+...+++++.|+++|+. .  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            56777888888888888888899999988 8899999999999999999999999999999998 6  344555556666


Q ss_pred             HHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          103 TLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      .+..+.++++++                        +..++..-+++|+..|......+..+.|..+.++      ...+
T Consensus       376 gl~~~~~p~~~~------------------------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a  425 (509)
T KOG2504|consen  376 GLARLFLPFATT------------------------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNA  425 (509)
T ss_pred             HHHHHHHHHhcc------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchH
Confidence            666666666632                        6667777888999999888888888999999988      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcC
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      +|+...+..++..+||.+.|++.+..+ |...|+.+++..+++..++++..
T Consensus       426 ~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  426 YGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            999999999999999999999999887 99999999988888877766655

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.83  E-value=1.2e-07  Score=100.27  Aligned_cols=161  Identities=10%  Similarity=-0.024  Sum_probs=118.4

Q ss_pred             HHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008182           38 RLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQ  117 (575)
Q Consensus        38 ~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~  117 (575)
                      ..........++.|+.+.+|.++.+.|.+.....++..++.++.+++.||. ++++.+..++. .++...+.++..    
T Consensus       218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----  291 (393)
T PRK11195        218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----  291 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh----
Confidence            344445556677888888999999999999999999999999999999998 99988877753 333333333321    


Q ss_pred             cCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHH
Q 008182          118 LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMA  197 (575)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~  197 (575)
                                          +.+...+..++.|++.+...+...+.+.+..|++. +    ++++++..+...++|..++
T Consensus       292 --------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-~----~g~~~a~~~~~~~~~~~~~  346 (393)
T PRK11195        292 --------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-G----AGHSIAVQNFNENLAMLLM  346 (393)
T ss_pred             --------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-c----chhHHHHHhHHHHHHHHHH
Confidence                                24445566677888888877777888777544322 1    6889999999999999999


Q ss_pred             HHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          198 VTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       198 ~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      ..+.+.+ +..|-+..+++.+...++.+.+.+.
T Consensus       347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK11195        347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAMALL  378 (393)
T ss_pred             HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            9888866 4578777777766655555444433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.82  E-value=5.6e-07  Score=94.56  Aligned_cols=138  Identities=15%  Similarity=0.306  Sum_probs=98.0

Q ss_pred             ccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceeh
Q 008182          367 SLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVF  446 (575)
Q Consensus       367 ~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (575)
                      ....++-..-+++-++..++    .+|      .+..+.+..|+++..+-++.+..+                   .++|
T Consensus       410 v~~a~~~~gEI~~~ffs~kl----I~k------iGHv~v~~lgLa~~~~Rf~~~S~L-------------------~n~W  460 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKL----IEK------IGHVNVMYLGLACNVGRFLYYSYL-------------------QNPW  460 (618)
T ss_pred             ehhhhhccchHHHHHHHHHH----HHH------hcccceeeehhhHHHHHHHHHHHh-------------------cCch
Confidence            34445555555555555544    343      223334778888888888888765                   4666


Q ss_pred             hhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccc
Q 008182          447 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTL-SLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGR  525 (575)
Q Consensus       447 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~-~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~  525 (575)
                      .+++.-++.|+..+++..+.-+|+...+|+++|.++.++..... .+|..+|+++.|.+.+..+                
T Consensus       461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------  524 (618)
T KOG3762|consen  461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------  524 (618)
T ss_pred             heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------
Confidence            67788999999999999999999999999999999999987665 6888888888887654322                


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          526 LDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       526 ~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                      ....|...++.+++..+.+...-+
T Consensus       525 ~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  525 ARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhh
Confidence            245566666666666665555443

>PRK09848 glucuronide transporter; Provisional

Probab=98.81  E-value=3.3e-08  Score=106.51  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=123.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++..++..++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++..+
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4566666777777777777777777888888898776665555555667788999999999999 999999999988888


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHh-hhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE-KTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~  183 (575)
                      +.+++.+.   +.                   .+.+.+++..++.++|.+...+...++.+|..|+++.+. +..++..+
T Consensus       307 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~  364 (448)
T PRK09848        307 GYLLFFWV---SV-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTY  364 (448)
T ss_pred             HHHHHHHc---Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHH
Confidence            87766553   11                   234556667778899999999999999999887653211 01158888


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISR  210 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~  210 (575)
                      +.+++...+|..+++.+.+.+.+..||
T Consensus       365 ~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        365 SLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999888665554

>TIGR00901 2A0125 AmpG-related permease

Probab=98.80  E-value=4.3e-08  Score=102.04  Aligned_cols=145  Identities=16%  Similarity=0.114  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHH-HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFM-GTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      .++.+++..++..+.++...++++.|+++ +|+++.+.+.+.++.. +...++.+++|+++||+ |||+.+.++.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            36666667777788888889999999987 8999999998888766 56778999999999999 999999988888777


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      +..+..+..+...          + .+  .+..+...+..+.++.+++.+...+...+++.+.+|++.      |++.++
T Consensus       288 ~~~~~~~~~~~~~----------~-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  348 (356)
T TIGR00901       288 TNAGFVWLASNGH----------H-DG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMA  348 (356)
T ss_pred             HHHHHHHHHhcCc----------c-cc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHH
Confidence            6665544311000          0 00  001234556677788899999999999999999999999      999999


Q ss_pred             hhhhhHH
Q 008182          185 RFFFFIS  191 (575)
Q Consensus       185 ~~~~~~~  191 (575)
                      +++...+
T Consensus       349 ~~~~~~~  355 (356)
T TIGR00901       349 LLSSLSA  355 (356)
T ss_pred             HHHHHHh
Confidence            8877654

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=2.6e-06  Score=90.02  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHH
Q 008182           67 VTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIAL  146 (575)
Q Consensus        67 ~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (575)
                      ..+.+....+.+++++.+.|++ |.|..+.++...+..-.+...+                         .|...++.+-
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~-------------------------~N~y~~yfss  109 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF-------------------------PNSYYLYFSS  109 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh-------------------------cchHHHHHHH
Confidence            6677888889999999999998 9999999998877765443332                         2467788999


Q ss_pred             HHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH
Q 008182          147 YLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  201 (575)
Q Consensus       147 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~  201 (575)
                      .+.|+|.+..+.....++++..+++.      +.+..++.......+.++|..+.
T Consensus       110 allG~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  110 ALLGFGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             HHhhhhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhh
Confidence            99999999999999999999988888      77777776666666666664333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.79  E-value=1.5e-08  Score=104.52  Aligned_cols=144  Identities=22%  Similarity=0.192  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCC-chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLP-SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      +|..+...++..+.++....+++.|+.+++|++ ..+.+.+.++..+...++.++.|+++||+ |+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            444555666666677788899999999999999 79999999999999999999999999998 9988888877777776


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+.+.+....                     .+....+...++.|++.+...+...+++.|.+|+++      |++..++
T Consensus       287 ~~~~~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~  339 (352)
T PF07690_consen  287 ALGLLLLPFS---------------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGL  339 (352)
T ss_dssp             HHHHCCSHHH---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHH
T ss_pred             HHHHHHHHHh---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHH
Confidence            6655544221                     134556667778899999999999999999999888      9999999


Q ss_pred             hhhhHHHhHHHHH
Q 008182          186 FFFFISLGTLMAV  198 (575)
Q Consensus       186 ~~~~~~ig~~l~~  198 (575)
                      .+...++|..+||
T Consensus       340 ~~~~~~~~~~igP  352 (352)
T PF07690_consen  340 FNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC
Confidence            9999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11043 putative transporter; Provisional

Probab=98.77  E-value=3.4e-07  Score=96.97  Aligned_cols=159  Identities=9%  Similarity=-0.067  Sum_probs=111.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      .+...+...+....++....++|.|++ +.|++..+.+........+..++..+.+++.||+ |+|+.+.......+++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~  282 (401)
T PRK11043        205 YLGNVLIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSV  282 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            333334444445556666677888876 5799999999888888888889999999999998 99998766666555554


Q ss_pred             HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh
Q 008182          107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  186 (575)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  186 (575)
                      +.+.+....+.                   .+....++...+.+++.+...+.......+..| ++      ++++.+++
T Consensus       283 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~g~~  336 (401)
T PRK11043        283 IAIWLASLLSH-------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QA------TGKAAALQ  336 (401)
T ss_pred             HHHHHHHHhcc-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-cc------ChHHHHHH
Confidence            43332211111                   123344555667788888888887777777765 45      89999998


Q ss_pred             hhhHHHhHHHHHHHHhhhcccccchhH
Q 008182          187 FFFISLGTLMAVTVLVYIQDEISRSVG  213 (575)
Q Consensus       187 ~~~~~ig~~l~~~i~~~l~~~~~~~~~  213 (575)
                      +.....++..++.+.+.+.+.......
T Consensus       337 ~~~~~~~~~~~~~~~g~l~~~~~~~~~  363 (401)
T PRK11043        337 NTLQLGLCFLASLLVSALISTPLLTTG  363 (401)
T ss_pred             HHHHHHHHHHHHHHHHHccCCChhHHH
Confidence            888888888888888888775444433

>TIGR00898 2A0119 cation transport protein

Probab=98.76  E-value=6.4e-08  Score=105.82  Aligned_cols=143  Identities=11%  Similarity=-0.055  Sum_probs=102.6

Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCc
Q 008182           55 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  134 (575)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (575)
                      .++.+...   ......+....+.++.++++||+ |||+++.++.++.+++.+++.+..+                    
T Consensus       352 ~~~~~~~~---~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------  407 (505)
T TIGR00898       352 NLGGNIYL---DLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------  407 (505)
T ss_pred             ccCCChHH---HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------
Confidence            45555332   23344566678889999999998 9999999998888888777665521                    


Q ss_pred             cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHH
Q 008182          135 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGY  214 (575)
Q Consensus       135 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f  214 (575)
                        .......+..++.+++.+...+....+.+|.+|++.      |++++++.+....+|++++|.+.+ +.+ .++..++
T Consensus       408 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~  477 (505)
T TIGR00898       408 --DLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPL  477 (505)
T ss_pred             --CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHH
Confidence              111233333445555666666778889999999988      999999999999999999999988 433 5667777


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 008182          215 GICSVAMFMAIIIFLAG  231 (575)
Q Consensus       215 ~~~~~~~~~~~~~~~~~  231 (575)
                      ++.++..+++.+..++.
T Consensus       478 ~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       478 VLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            77776666665554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.72  E-value=5e-07  Score=94.60  Aligned_cols=150  Identities=7%  Similarity=-0.041  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      ..+..++..++...+.+....+.+.+..+.+|+++.+.+.+.....++..++.++.|+++||+ |||+++.++..+..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  273 (377)
T PRK11102        195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM  273 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence            344445555555555666666777888888999999999999999999999999999999999 9999999887765443


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .+........+                    .+.....++..+.+.+.+...+.....+.|..| +.      +++..+.
T Consensus       274 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~  326 (377)
T PRK11102        274 GIWLVVSALLD--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSL  326 (377)
T ss_pred             HHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHH
Confidence            32222211101                    112333334444444445555555566677665 45      7788877


Q ss_pred             hhhh-HHHhHHHHHHHHhh
Q 008182          186 FFFF-ISLGTLMAVTVLVY  203 (575)
Q Consensus       186 ~~~~-~~ig~~l~~~i~~~  203 (575)
                      .... ..+|..+++++++.
T Consensus       327 ~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        327 AGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            5443 45677777766543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.72  E-value=4.6e-07  Score=95.64  Aligned_cols=85  Identities=14%  Similarity=0.023  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      ++...+...+............+.|+.+++|+++.+.+.+.....+...++.++.|++.||+ |||+.+.++.++..++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  283 (392)
T PRK10473        205 FLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAG  283 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            33333333333333344455567788888999999999999999999999999999999998 99999999988888887


Q ss_pred             HHHHHH
Q 008182          107 GMLAMV  112 (575)
Q Consensus       107 ~l~~~~  112 (575)
                      +++.+.
T Consensus       284 ~~~~~~  289 (392)
T PRK10473        284 ITLALS  289 (392)
T ss_pred             HHHHHH
Confidence            777665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.69  E-value=3.6e-07  Score=91.64  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----------------C--CCCchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGT-----------------M--HLPSATSANIVTDFMGTSFLLCLLGGFLAD   86 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----------------l--~~~~~~~~~~~~~~~~~~~~~~~~~G~laD   86 (575)
                      .-+.+..+.|.+.++||+++-.-....+..                 .  ..+...--.=..+..+.-+-+.++.+++.|
T Consensus       327 ttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~ive  406 (528)
T KOG0253|consen  327 TTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVE  406 (528)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHH
Confidence            444566678889999998853322211111                 0  111111112233456667788899999999


Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccc
Q 008182           87 TFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTD  166 (575)
Q Consensus        87 r~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~  166 (575)
                      |+ |||+++..+++++.+..+++..+.+ +.                   ....+++.+|+++..+.    .+.+.+..|
T Consensus       407 rl-GRKkTMal~l~~f~iflfll~~c~~-rn-------------------~~tvllf~arafisg~f----qvaYvYtPE  461 (528)
T KOG0253|consen  407 RL-GRKKTMALSLILFGIFLFLLTTCKT-RN-------------------AYTVLLFTARAFISGAF----QVAYVYTPE  461 (528)
T ss_pred             Hh-cchhHHHHHHHHHHHHHHHHHHhcC-cc-------------------hhHHHHHHHHHHHhchh----eEEEEecCc
Confidence            98 9999999999999998887766532 11                   12456778888775544    455788899


Q ss_pred             cCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          167 QFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       167 ~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      .+|...      |+.+.|....+..+|+++.|.++ ...+ -.-..+..+.....+++.+..+++
T Consensus       462 VyPTav------RatgvGtcSsmaRIggI~~p~iA-~~~e-~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  462 VYPTAV------RATGVGTCSSMARIGGIFSPVIA-MRAE-LSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             ccchhh------hhcchhhhhhHHhhhhhhhhHHH-HHhc-cceeehHHHHHHHHHHHHHHheee
Confidence            999999      99999999999999999999888 3333 333344445555555555554444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.3e-07  Score=101.48  Aligned_cols=178  Identities=16%  Similarity=0.101  Sum_probs=121.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccc-------hHHHH-H
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLG-------RYKTI-A   96 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~G-------r~~~~-~   96 (575)
                      +.+|.+.+..+++..+++.+..++|+|+.+.+|++..+.|++.++..+...+..+++|.++||..-       +||.+ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            479999999999999999999999999999999999999999999999999999999999999833       11211 1


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      ++....++..+.+++.   +.              + ........+.++..+.|+..++.    ..-..|. .++.    
T Consensus       338 i~~~~~ai~l~~l~~~---~~--------------~-~~~~a~~~l~~~~~~~g~~~~Gf----~~~~~~~-apq~----  390 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFT---SD--------------E-HRLLAVILLTIAIGLSGFNISGF----YKNHQDI-APQH----  390 (466)
T ss_pred             HHHHHHHHHHHeeeec---CC--------------C-cchHHHHHHHHHHHHcccchhhh----Hhhhhhc-cchH----
Confidence            2222222233333322   11              0 00011111111112222222221    1112222 2333    


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhhccc---ccchhHHHHHHHHHHHHHHHHHhc
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYIQDE---ISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                        -+..+++.+...++.+.++|.+.+.+.+.   ..|+.+|++.+++.+++-+.+.+.
T Consensus       391 --a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  391 --AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence              68889999999999999999999999842   369999999998888877666555

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.63  E-value=1.1e-06  Score=93.68  Aligned_cols=189  Identities=12%  Similarity=0.077  Sum_probs=134.8

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      .+.....+.+.++..++.-.......+.+-++-|++..++-+++........+..+.+.++.||+ |||+.++++..++.
T Consensus       268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~  346 (485)
T KOG0569|consen  268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMA  346 (485)
T ss_pred             hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Confidence            34566677777777776655566667777778899999999999999999999999999999999 99999999999998


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccc-cccchhccccccCCCCChHhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGG-LKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                      +..+++..........               +..-....+++.++..+..+. ..|...-+.+|.+|++.      |..+
T Consensus       347 ~~~~~~~~~~~l~~~~---------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R~aa  405 (485)
T KOG0569|consen  347 VALLLMSIALFLSNSF---------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------RSAA  405 (485)
T ss_pred             HHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------hHHH
Confidence            8887776654332200               000001123444443333332 35677778899999999      9999


Q ss_pred             hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          183 FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       183 ~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      +++......+..++....-..+.+..|- ..|.+..+..++..+..++..|+.
T Consensus       406 ~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  406 QSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            9998888888888887777888887775 555555555555555555544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.63  E-value=3.5e-07  Score=99.26  Aligned_cols=165  Identities=15%  Similarity=0.064  Sum_probs=117.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.+++..++.....+......+.|.+..++ +....+.+.+...+...++.++.++++||+ |||++++++..+..+
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            566777777777777776666666555554444 556666777777788889999999999999 999999988877676


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh-hhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK-TQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~  183 (575)
                      +.+........+.                   .+...+++..++.+++.+...+...++++|..+..+.+.. ...+..+
T Consensus       309 ~~~~~~~~~~~~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~  369 (473)
T PRK10429        309 SCGVLLLMGLAAP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAY  369 (473)
T ss_pred             HHHHHHHHhccCc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHH
Confidence            6555433210011                   2345566666778889898888889999999774431100 0135577


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISR  210 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~  210 (575)
                      +...+...+|..+++.+.|++.+..||
T Consensus       370 s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        370 SVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888889999999999999998776655

>PRK09669 putative symporter YagG; Provisional

Probab=98.63  E-value=3.3e-07  Score=98.59  Aligned_cols=162  Identities=11%  Similarity=0.079  Sum_probs=108.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.++...++............+.|.+..++ ++...+.+.....+...++.+++++++||+ |+|+.+.++.++.++
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            345555555555544443333333334443343 333444555566677778889999999998 999999988776665


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh-hhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK-TQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~  183 (575)
                      +.....+.   +.                   ++...+++..++.+++.+...+...++++|..+.++.+.. ...+..+
T Consensus       307 ~~~~~~~~---~~-------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~  364 (444)
T PRK09669        307 LSALIFFI---PP-------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVF  364 (444)
T ss_pred             HHHHHHHh---Cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHH
Confidence            43333222   11                   2355667777889999999999999999999875442211 1135667


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISR  210 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~  210 (575)
                      +.+.++..+|.++|+.++|++.+..|+
T Consensus       365 s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        365 STNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888889999999999999998776666

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.59  E-value=1.1e-06  Score=92.82  Aligned_cols=180  Identities=11%  Similarity=0.059  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .+...++..++...+.-....+...|+++.-|.+....+.+.++-.+.-.+.-...+++..|+ |.|++++++.+..++=
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR  286 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR  286 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            455555666666666667788899999865447888888877777777778888999999998 9999999999988887


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      ..+.+..++ |.                  ........++..+.|+..+....+...++.+..|++.      |+++.++
T Consensus       287 ~~l~a~~~~-~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l  341 (400)
T PF03825_consen  287 WLLYAYFSD-PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGL  341 (400)
T ss_pred             HHHHHHhcC-Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHH
Confidence            777776521 11                  0012223444567899999999999999999999999      9999999


Q ss_pred             hhhh-HHHhHHHHHHHHhhhcccccch------hHHHHHHHHHHHHHHHHHhc
Q 008182          186 FFFF-ISLGTLMAVTVLVYIQDEISRS------VGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       186 ~~~~-~~ig~~l~~~i~~~l~~~~~~~------~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +... ..+|..+|..++|++.+.+|-+      ..+.++++..++..+++++.
T Consensus       342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~  394 (400)
T PF03825_consen  342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVIL  394 (400)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            7764 6899999999999999887644      44455555555554444443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.58  E-value=7.7e-07  Score=94.73  Aligned_cols=162  Identities=10%  Similarity=-0.002  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTM-HLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      ++..++..++-.....+..++++.|+.+.. +.+....+...+.+.....++++++|+++||+ ++||++.++.+...+.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            444444555544444466788999987532 44555556667777788899999999999998 9999998888877777


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      .++..+...                        .. .....++.++..+.+.|...++..+..+++.      ......+
T Consensus       313 ~ll~~~~~~------------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l  361 (410)
T TIGR00885       313 CLGSIFAGG------------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGL  361 (410)
T ss_pred             HHHHHHcCC------------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHH
Confidence            666655411                        11 2455667788888888999999999887655      3222222


Q ss_pred             hhhhHHHhHHHHHHHHhhhcccc------cchhHHHHHHHHHH
Q 008182          186 FFFFISLGTLMAVTVLVYIQDEI------SRSVGYGICSVAMF  222 (575)
Q Consensus       186 ~~~~~~ig~~l~~~i~~~l~~~~------~~~~~f~~~~~~~~  222 (575)
                       .+ ..+|+.+.|.+.|++.|..      +.+..|+++.+..+
T Consensus       362 -~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       362 -VM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             -HH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence             22 2399999999999999953      47888887665443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.58  E-value=3.1e-07  Score=95.60  Aligned_cols=141  Identities=12%  Similarity=0.075  Sum_probs=104.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .++...+..++.....+.+..+++.|+++.+|+++.+.+.+.....+...++.+++|+++||+ |||+.+..+.....++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~  304 (366)
T TIGR00886       226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG  304 (366)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence            455566666666666778888999999999999999999999999999999999999999998 9999888887776666


Q ss_pred             HHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhh
Q 008182          106 TGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSR  185 (575)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  185 (575)
                      ..++.+....+                    .+...+.+...+.+++.|...+...+++++.+| ++      +++..|+
T Consensus       305 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~  357 (366)
T TIGR00886       305 AFLVVLGLVSP--------------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGL  357 (366)
T ss_pred             HHHHHhcCCCc--------------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHH
Confidence            66555431100                    024444444555555556556666777888776 45      8999999


Q ss_pred             hhhhHHHhH
Q 008182          186 FFFFISLGT  194 (575)
Q Consensus       186 ~~~~~~ig~  194 (575)
                      .+...++|+
T Consensus       358 ~~~~~~~g~  366 (366)
T TIGR00886       358 VGAIGNLGG  366 (366)
T ss_pred             HHHhccCCC
Confidence            888777763

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.50  E-value=1.7e-06  Score=90.43  Aligned_cols=179  Identities=13%  Similarity=0.082  Sum_probs=139.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMH---LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      -|.+|.+.+........|+..-...+.|.+..++   .++...|.+.+.-.+.-++.-.++.++-+|+ |.|+.++++..
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            3567766665555555555555668888876443   4455677778888888888889999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ++++=...++++++                        .+.+.+.+.+.++-.+....+..-++++.+|++-      .+
T Consensus       298 i~~iRi~~~~~~~~------------------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sA  347 (412)
T PF01306_consen  298 IMAIRIIGSGFATN------------------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SA  347 (412)
T ss_dssp             HHHHHHHHHHT--S------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HH
T ss_pred             HHHHHHHHHhhhcc------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HH
Confidence            98888888888743                        6678899999999999988999999999999887      77


Q ss_pred             hhhhh-hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          181 YFFSR-FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       181 ~~~~~-~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +...+ ++.+..+|..+.+.++|++.|..|++..|++.+.+.+...++..+..+
T Consensus       348 t~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  348 TLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence            77777 567889999999999999999999999998877776666666555544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.49  E-value=4.8e-06  Score=87.95  Aligned_cols=142  Identities=11%  Similarity=-0.001  Sum_probs=98.9

Q ss_pred             HHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 008182           41 TMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRP  120 (575)
Q Consensus        41 ~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  120 (575)
                      ........+.|+++.+|+++.+.+++......+..++.++.+++.||+ ||+...  ......++.+..........   
T Consensus       223 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~---  296 (394)
T PRK11652        223 IAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWFGV---  296 (394)
T ss_pred             HHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHhcc---
Confidence            333345567788888999999999988888888888899999999998 733322  22222222222111100000   


Q ss_pred             CCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHH
Q 008182          121 RPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTV  200 (575)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i  200 (575)
                                      .+...+.+...+.++|.+...|...+...|.+| ++      ++...++.+...++|+.+++.+
T Consensus       297 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        297 ----------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YL------AGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cc------chHHHHHHHHHHHHHHHHHHHH
Confidence                            124456667788888888888999988888886 35      7888889888889999999999


Q ss_pred             Hhhhcccccch
Q 008182          201 LVYIQDEISRS  211 (575)
Q Consensus       201 ~~~l~~~~~~~  211 (575)
                      ++++.+...+.
T Consensus       354 ~~~~~~~~~~~  364 (394)
T PRK11652        354 SAMLPQTGQFS  364 (394)
T ss_pred             HHHccCCchHH
Confidence            99887654444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.9e-06  Score=82.72  Aligned_cols=154  Identities=18%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             HHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCc
Q 008182           47 NLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKET  126 (575)
Q Consensus        47 ~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  126 (575)
                      ....|+.+.+|+...+.+.+.-+-.....+...+.|-++||- ||||.-+.-.+.+.+    +.+.--            
T Consensus        58 PYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYiL----sCiTKh------------  120 (454)
T KOG4332|consen   58 PYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYIL----SCITKH------------  120 (454)
T ss_pred             ceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHHH----HHHhhc------------
Confidence            334577788999999999998888888899999999999998 999976555444443    332211            


Q ss_pred             CcccccCccchhhHHHHHHHHHHHHcccccccchhc-cccccCCCCChHhhhhhhhhhhh-hhhhHHHhHHHHHHHHhhh
Q 008182          127 ATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSG-FGTDQFDEKDEKEKTQMAYFFSR-FFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~l~~~i~~~l  204 (575)
                               ..++-.++++|++-|+..+....+..+ +++|...++.-. ++=...-++- ....+.+-.+++.+.+..+
T Consensus       121 ---------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~Fe-qqWls~TFskA~ffgNglvAiiaGlfgn~l  190 (454)
T KOG4332|consen  121 ---------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFE-QQWLSVTFSKAVFFGNGLVAIIAGLFGNLL  190 (454)
T ss_pred             ---------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccCCh-HhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence                     124667899999999999987777665 445654333211 0001111111 1122333344444445555


Q ss_pred             cccc--cchhHHHHHHHHHHHHHHH
Q 008182          205 QDEI--SRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       205 ~~~~--~~~~~f~~~~~~~~~~~~~  227 (575)
                      .+++  |.-.+|-.++....++..+
T Consensus       191 vd~~slGPVAPFdAAacfLaigmAv  215 (454)
T KOG4332|consen  191 VDTFSLGPVAPFDAAACFLAIGMAV  215 (454)
T ss_pred             HHHhccCCCCchHHHHHHHHHHHHH
Confidence            5554  4667776555444444333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.41  E-value=7.7e-06  Score=84.28  Aligned_cols=173  Identities=16%  Similarity=0.189  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML  109 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~  109 (575)
                      .+..-+...++++.=-..+-+|--+.+|++..|...+......+..++-...|++..|..+++++..+++...+++..+.
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            33334445555554456788899999999999999999999999999999999998865599999999999999988877


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      .++...                     .+.+.+..+.+++|+|+|.+....-+.+-|+.++++      .+..+|.+..+
T Consensus       293 i~a~~~---------------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaa  345 (403)
T PF03209_consen  293 ILAGPL---------------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAA  345 (403)
T ss_pred             HHHHhc---------------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHH
Confidence            777432                     237788999999999999998888888999988887      88999999999


Q ss_pred             HHHhHHHHHHHHhhhccc----------ccchhHHHHHHHHHHHHHHHHH
Q 008182          190 ISLGTLMAVTVLVYIQDE----------ISRSVGYGICSVAMFMAIIIFL  229 (575)
Q Consensus       190 ~~ig~~l~~~i~~~l~~~----------~~~~~~f~~~~~~~~~~~~~~~  229 (575)
                      ..+...++..++|.+.|.          .+|..+|.+-++..++++.+..
T Consensus       346 QA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888887552          3477778777777666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.41  E-value=2.7e-07  Score=95.53  Aligned_cols=143  Identities=17%  Similarity=0.227  Sum_probs=114.9

Q ss_pred             ccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccce
Q 008182          365 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  444 (575)
Q Consensus       365 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (575)
                      .+.++....+...++.|+.+++.++..|++-          +.+|..+..++.+..++.                   ..
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v----------~~vG~~iW~~Av~~~~fs-------------------~~  120 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRV----------IAVGIFIWTLAVFASGFS-------------------NH  120 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCcceE----------EeeHHHHHHHHHHHHHHH-------------------HH
Confidence            3556777888888999999999776666533          788999999998888775                   23


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCccc
Q 008182          445 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRG  524 (575)
Q Consensus       445 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~  524 (575)
                      .+.+++.-.+.|+||+...|...+++++.+|...|++..+++++...+|..+|-...+.+.++..     .|        
T Consensus       121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W--------  187 (493)
T KOG1330|consen  121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW--------  187 (493)
T ss_pred             HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce--------
Confidence            34567788999999999999999999999999999999999999999999998777666543322     24        


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          525 RLDLFYGLLAILSIINLVIYLICAVWY  551 (575)
Q Consensus       525 ~~~~~f~~~a~l~~v~~~~~~~~~~~~  551 (575)
                        ++-|++.++++++..++..++.++-
T Consensus       188 --r~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  188 --RWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             --EEEEEeehHHHHHHHHHHHhhccCc
Confidence              5567888999988888777776653

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.38  E-value=4e-06  Score=90.96  Aligned_cols=186  Identities=7%  Similarity=-0.053  Sum_probs=129.7

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCch----hhHHHHHHHHHHHHHHHHHHH----HHhhcccchHHHH--H
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA----TSANIVTDFMGTSFLLCLLGG----FLADTFLGRYKTI--A   96 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~G----~laDr~~Gr~~~~--~   96 (575)
                      +..+++...+....+.-..+.++.|..++.+.+..    ..+++.+.-.+...+.+++..    ++.||..+.+...  .
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            33334444444555555566688888776554432    256777777777777776655    4455421333433  6


Q ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182           97 IFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      +|.++.+++.+.++++...               .+.+...+.+++.+..++.++|+....|...+++++..|++.    
T Consensus       354 ~G~~l~~~~~~~~~~~~~~---------------~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~----  414 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWF---------------ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL----  414 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhh---------------cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence            7888888887777654110               011122467888999999999999999999999999999998    


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                        |++.++++.....+|..+++.+.....+..+|...|...++..++..++.++..|
T Consensus       415 --~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       415 --MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999988888777678888887777766666555555444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.37  E-value=9.3e-06  Score=86.54  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=114.1

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++...+..++....++.....+|.|+++.+|+++.+.++.......+..++..+.+.+.++. +++|.+.....+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            3466666666667777777778889999999999999999988888888888888888876555 455554444444445


Q ss_pred             HHHHHHHHhh-hcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          105 GTGMLAMVTK-LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      +.+++..... .+                    .+....+++.++.++|.+...|......-  .+.+.+     ++++.
T Consensus       297 g~~l~~~~~~~~~--------------------~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~a~  349 (413)
T PRK15403        297 GLALLIVGNLLWP--------------------HVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGTVS  349 (413)
T ss_pred             HHHHHHHHHHHcc--------------------ccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcHHH
Confidence            5444433210 01                    12333566777888888888777774322  222211     67777


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      +..+.....+..+++.+++++.+. +-..+|....+...+.+..
T Consensus       350 a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~  392 (413)
T PRK15403        350 ASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence            777777778888888888888664 5566666655554444333

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.37  E-value=4.1e-06  Score=88.59  Aligned_cols=162  Identities=19%  Similarity=0.156  Sum_probs=128.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+...++..++...++....+....|.+-.+|.++.+..........+..++.++..++++|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            4566666667777776666667778888888999999998888888888888899999999999 999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhh-hhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKT-QMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~  183 (575)
                      +.++..+..   .                   ++..+.++..++.++|.+...+...++++|..+..+-+... .-|..+
T Consensus       315 ~~~~~~f~~---~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~  372 (467)
T COG2211         315 GYLLLYFTP---A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY  372 (467)
T ss_pred             HHHHHHhhc---C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence            999888873   1                   35778888889999999999999999999988755432211 125555


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS  209 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~  209 (575)
                      +.+....-+|.+++..+.|++....|
T Consensus       373 s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         373 SGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            66777778888888888877755444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.35  E-value=1.3e-05  Score=78.57  Aligned_cols=155  Identities=15%  Similarity=0.214  Sum_probs=106.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |-.+...+.+..+.. ..|.. ....+.+++++|+|.+|.+.+...-.++..+ .++.|.+.|++ |++.++.+|.+...
T Consensus         2 W~~l~a~~~v~~~~G-t~Y~F-s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~   77 (250)
T PF06813_consen    2 WLSLVASIWVQLCSG-TTYTF-SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGF   77 (250)
T ss_pred             hhhHHHHHHHHHhcC-cccch-hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHH
Confidence            333333344444433 23322 4566778999999999999999999999886 58889999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      +|..++.++-+-.                 ......+.+.+...+.+.+.+....+...-..+.||+ +      ||++.
T Consensus        78 ~GY~~~~l~~~~~-----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vv  133 (250)
T PF06813_consen   78 VGYGLLWLAVSGR-----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVV  133 (250)
T ss_pred             HHHHHHHHHHhCc-----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCcee
Confidence            9999888874311                 1112345555555566566554444443444578874 6      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      ++.-....+++.+-..+-..+.+
T Consensus       134 gilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen  134 GILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             hhhhHHHHhHHHHHHHHHHHHcC
Confidence            99777777777765555544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.33  E-value=1.1e-05  Score=70.83  Aligned_cols=133  Identities=23%  Similarity=0.329  Sum_probs=92.7

Q ss_pred             cchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhH
Q 008182          370 VFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLI  449 (575)
Q Consensus       370 ~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  449 (575)
                      ....+...+..++.+++.++..+|          +.+..+..+..++.+.....                   .+.+...
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~----------~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~   55 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRK----------PVLLVGLFIFVLSTAMFALS-------------------SNITVLI   55 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchh----------HHHHHHHHHHHHHHHHHHHh-------------------ccHHHHH
Confidence            344556666677777765544333          23555666666665554432                   2334556


Q ss_pred             HHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHH
Q 008182          450 PQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLF  529 (575)
Q Consensus       450 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~  529 (575)
                      ...++.+++.....+....++.+..|++.|++++++.+....+|..+++.+.+.+.+..      +|          ...
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~----------~~~  119 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL------GW----------RAP  119 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc------ch----------HHH
Confidence            67888899999999999999999999999999999999999999999999998775321      12          455


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008182          530 YGLLAILSIINLVIYLIC  547 (575)
Q Consensus       530 f~~~a~l~~v~~~~~~~~  547 (575)
                      |++.+.+.++..+..+..
T Consensus       120 ~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       120 FLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            666666666665555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.26  E-value=0.0025  Score=67.68  Aligned_cols=190  Identities=10%  Similarity=-0.040  Sum_probs=106.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |..+.+....++.+.+--+...-.+.|+.+-+.-+.-..+..-..-.+...+..+..|.+.||. .|.+++..++++.-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            4566777888888888888878888888876554555555555556777788889999999998 999998888776554


Q ss_pred             HHHHHHHH----hhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          105 GTGMLAMV----TKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       105 ~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      ...+.+..    -..+..           . .+........+.+..++-++..=.......+.=-|+...=..++...+.
T Consensus        81 sv~~s~~~~~~l~~~~~~-----------~-~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La  148 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSS-----------S-SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA  148 (432)
T ss_pred             HHHHHHHHHHHHHhCCcc-----------c-cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH
Confidence            43222211    111110           0 0001111222222222222222222222233345553211111111144


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIII  227 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~  227 (575)
                      +..+...=.=-+.-.++|++.|.+....+......+.++..++++.+
T Consensus       149 ~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  149 RMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            44444333335677889999999988888877766666666655554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK11462 putative transporter; Provisional

Probab=98.23  E-value=3.3e-05  Score=83.57  Aligned_cols=162  Identities=10%  Similarity=0.028  Sum_probs=97.6

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+..++...++..+...........|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+.+..+..+..+
T Consensus       228 k~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~  305 (460)
T PRK11462        228 DQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAV  305 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3444555455555555444444444444444443 34455677778888889999999999998 999887755554444


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhh-hhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQ-MAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~  183 (575)
                      ..++..+.   |.                   .+...+++..++.+++.+...+...++++|..+.++-+.... -+..+
T Consensus       306 ~~~~~~~~---~~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~  363 (460)
T PRK11462        306 ISLAMFFV---PM-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF  363 (460)
T ss_pred             HHHHHHHh---ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence            33333222   11                   112233444455677777666667788888876432111110 24445


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISR  210 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~  210 (575)
                      +...++..+|..+++.++|++.+..||
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666678889999999888887665454

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.22  E-value=2.5e-05  Score=77.57  Aligned_cols=148  Identities=22%  Similarity=0.261  Sum_probs=110.8

Q ss_pred             hHHHHHHHhhhcCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 008182           44 IAVNLVTYLVGTMHLPS--ATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPR  121 (575)
Q Consensus        44 ~~~~l~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  121 (575)
                      .....+.+.. +++.+.  .+.++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+..+       
T Consensus        21 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-------   91 (338)
T COG0477          21 LSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-------   91 (338)
T ss_pred             HHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc-------
Confidence            3344444444 444444  5788999999999999999999999999 9998888888765566555555422       


Q ss_pred             CCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCC-CChHhhhhhhhhhhhhhh-hHHHhHHHHHH
Q 008182          122 PCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDE-KDEKEKTQMAYFFSRFFF-FISLGTLMAVT  199 (575)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~ig~~l~~~  199 (575)
                                     .....+++.|.+.|++.+...+...+++.|.+++ +.      |+...+.... ...+|..+++.
T Consensus        92 ---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  150 (338)
T COG0477          92 ---------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGPL  150 (338)
T ss_pred             ---------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                           2367788889889999998899999999999887 34      8888888777 57788888887


Q ss_pred             HHhhhccc--ccchhHHHHHHHHH
Q 008182          200 VLVYIQDE--ISRSVGYGICSVAM  221 (575)
Q Consensus       200 i~~~l~~~--~~~~~~f~~~~~~~  221 (575)
                      +++.+...  .+|+..|.+.....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         151 LAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHH
Confidence            77776553  56888665554443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.21  E-value=0.00035  Score=72.93  Aligned_cols=156  Identities=14%  Similarity=0.064  Sum_probs=108.0

Q ss_pred             HHHHHHHhhhc-CCCCchhhHHHHH-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008182           45 AVNLVTYLVGT-MHLPSATSANIVT-DFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  122 (575)
Q Consensus        45 ~~~l~~yl~~~-l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  122 (575)
                      -+++.+|+++. .|++..|...-+. +..-.+...-++...+.|.+ |.|++++++.+...+...++.+..+        
T Consensus        23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s--------   93 (412)
T PF01770_consen   23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS--------   93 (412)
T ss_pred             CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc--------
Confidence            46789999997 9999998874333 33445556678889999998 9999999998887777777777643        


Q ss_pred             CCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                                      ...+-+..++-|++.+. ..+..+++=...|+++      --++.+....+.-+|..++..++-
T Consensus        94 ----------------v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQ  150 (412)
T PF01770_consen   94 ----------------VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQ  150 (412)
T ss_pred             ----------------HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            55566777777777665 3445555555555544      455566666777777777777766


Q ss_pred             hhcc--cccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          203 YIQD--EISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       203 ~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                      .+..  ..++...+++......++++..++++
T Consensus       151 llvs~~~~sy~~L~~isl~~~~~a~~~~~fLP  182 (412)
T PF01770_consen  151 LLVSFGGVSYFQLNYISLASVSLALLIALFLP  182 (412)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            6554  33467777777766666666655543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.20  E-value=3.4e-05  Score=79.04  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=108.8

Q ss_pred             hhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 008182           43 GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRP  122 (575)
Q Consensus        43 ~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  122 (575)
                      ....+++.|+.+..|++..+++..++.+..+.++++.++-++-.|+ ...|.+.+..+...+-++..++..+        
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~~l~~g--------  324 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAVALIGG--------  324 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence            3457899999998999999999999999999999999999998898 8888777766555544444444421        


Q ss_pred             CCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          123 CKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                                       ..-+.+.++.|+.++.+.|...++..+..+++.        +.-|..-....+|+++.|.+.|
T Consensus       325 -----------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~maivGGAiiP~l~G  379 (422)
T COG0738         325 -----------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVMAIVGGAIIPPLQG  379 (422)
T ss_pred             -----------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeeeheecchHHHHHHH
Confidence                             223455678899999999999999999998443        3333334456789999999999


Q ss_pred             hhcccccchhHHH
Q 008182          203 YIQDEISRSVGYG  215 (575)
Q Consensus       203 ~l~~~~~~~~~f~  215 (575)
                      ++.|..+-...+.
T Consensus       380 ~i~d~~g~~~~~~  392 (422)
T COG0738         380 VIADMFGIQLTFL  392 (422)
T ss_pred             HHHHhhhhHHHHH
Confidence            9999998777766

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.18  E-value=2.3e-05  Score=87.95  Aligned_cols=133  Identities=11%  Similarity=0.096  Sum_probs=93.6

Q ss_pred             ccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 008182          365 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAV----------  434 (575)
Q Consensus       365 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------  434 (575)
                      .+.+.+...+...+..+++.++.++..||          +.+.+|.++++++.+++++.+...... .++          
T Consensus        70 ~G~i~s~~~i~~~~~~i~v~~~~~r~~r~----------~~i~~g~ll~~lg~ll~alphf~~~~y-~~~~~~~~~~~~~  138 (633)
T TIGR00805        70 SGLINGSYEIGNLLLIIFVSYFGTKLHRP----------IVIGIGCAIMGLGSFLLSLPHFLSGRY-SYSTTVSSTGNLS  138 (633)
T ss_pred             ceeeeehhhHHHHHHHHHHHHhhcccCcc----------eEEEecHHHHHHHHHHHhChHHhcCCc-ccccccccccccc
Confidence            34566667777777777777775544333          236778888888888877653211000 000          


Q ss_pred             ---------C-C-C----------CCCc--cceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHH
Q 008182          435 ---------G-L-T----------TATL--PVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLS  491 (575)
Q Consensus       435 ---------~-~-~----------~~~~--~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~  491 (575)
                               . . +          ....  ...+..+++.-++.|+|++...+....++.|.+|++.|+.+.|+++....
T Consensus       139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~  218 (633)
T TIGR00805       139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV  218 (633)
T ss_pred             ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence                     0 0 0          0000  11344567789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 008182          492 LGFFVSSFLVAVVKKVT  508 (575)
Q Consensus       492 lg~~lg~~l~~~v~~~~  508 (575)
                      +|..+|+.+.+.+.+..
T Consensus       219 iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       219 FGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             hhhHHHHHHHHHHHhcc
Confidence            99999999999877544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.14  E-value=3.1e-05  Score=83.30  Aligned_cols=208  Identities=8%  Similarity=-0.063  Sum_probs=144.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhc-CCCCch-----h-----hHHHHHHHHHHHHHHHHHHHHHhhc
Q 008182           19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGT-MHLPSA-----T-----SANIVTDFMGTSFLLCLLGGFLADT   87 (575)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-l~~~~~-----~-----~~~~~~~~~~~~~~~~~~~G~laDr   87 (575)
                      ..+..+|..+.++.++++..++++.+..+.+.|+.++ ++-++.     +     ..+....+.+...+.+++.-++.+|
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456678999999999999999999999999998853 332221     1     2244445555556777778888999


Q ss_pred             ccch-HHHHHHHHHHHHHHHHHHHHHhhhcc-cCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhcccc
Q 008182           88 FLGR-YKTIAIFAAVQTLGTGMLAMVTKLRQ-LRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGT  165 (575)
Q Consensus        88 ~~Gr-~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~  165 (575)
                      + |+ |++..++.++.+++.....+.++.++ ..  +.++..++.  .|........++...+.|+..+.......++++
T Consensus       332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s  406 (477)
T TIGR01301       332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSR--YYDGDGESL--PPPTGIKASALIVFAILGIPLAITYSIPFALAS  406 (477)
T ss_pred             h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccc--ccccccccc--CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHH
Confidence            8 95 77779998888888887776543211 00  000000000  111122355556667789999999999999999


Q ss_pred             ccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccccc--chhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          166 DQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS--RSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       166 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      +..+++.++    .|..+|+.+.++-+...+..+..|.+.+..|  -.+.+.+.++.++++.+..++..|+.
T Consensus       407 ~~~~~~~~~----~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       407 IRSSNLGAG----QGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             HHccccCCC----CcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999865422    6999999999999999999988888655554  56677888888888877777666643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.13  E-value=0.0017  Score=67.86  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008182          444 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  504 (575)
Q Consensus       444 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  504 (575)
                      +.+.+++..+..|+..+..+...+..+.+..|++.|..++|+....-++|..+++.+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3445556677778888999988888889999999999999999999999988887776543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=1e-05  Score=82.39  Aligned_cols=142  Identities=22%  Similarity=0.228  Sum_probs=115.7

Q ss_pred             ccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccce
Q 008182          365 AGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVS  444 (575)
Q Consensus       365 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (575)
                      .+.+...-.+..++..|+.+.+.+++..|.          -+.+|++++..+.+++++..                   +
T Consensus       108 iG~LFaskA~~qllvnp~~G~l~~~iGy~i----------pm~~Gl~vmf~sTilFafg~-------------------s  158 (464)
T KOG3764|consen  108 IGLLFASKALVQLLVNPFFGNLIDRIGYKI----------PMVAGLFVMFLSTILFAFGN-------------------S  158 (464)
T ss_pred             hhHHHHHHHHHHHHhcccchhhHHHhcccc----------HHHHHHHHHHHHHHHHHHcc-------------------h
Confidence            345556667777777788877766655552          38999999999999999863                   3


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhhheecccCCcch-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcc
Q 008182          445 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGM-KTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINR  523 (575)
Q Consensus       445 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~  523 (575)
                      ...+++.=.+.|+|.++.++...+++++.+|++. ||.++|+.....++|..+||.+.|.++++.++             
T Consensus       159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk-------------  225 (464)
T KOG3764|consen  159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK-------------  225 (464)
T ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC-------------
Confidence            3467888999999999999999999999999775 69999999999999999999999999987663             


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          524 GRLDLFYGLLAILSIINLVIYLICAVWY  551 (575)
Q Consensus       524 ~~~~~~f~~~a~l~~v~~~~~~~~~~~~  551 (575)
                         +..|.++++++++....-++..+.+
T Consensus       226 ---~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  226 ---SAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             ---cCcHHHHHHHHHHHHHHHHheeCcc
Confidence               3458999999988888766665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.09  E-value=1.8e-05  Score=85.37  Aligned_cols=164  Identities=12%  Similarity=0.063  Sum_probs=109.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTIAIFAAVQ  102 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~~~~~  102 (575)
                      .+|...+..+|.....|+...++|.|+++..|++..+++.+...+.++..++.+++|+++||.   ..+|..+...+.++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            588899999999999999999999999987789999999999999999999999999999993   16666666665554


Q ss_pred             HH-HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          103 TL-GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       103 ~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+ |.+.+.....                        ......+.+....+.....++...-..+....+.+     |-.
T Consensus       354 ~~~g~~~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k-----~~~  404 (495)
T KOG2533|consen  354 AIIGAISLLAAAV------------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTK-----ALT  404 (495)
T ss_pred             HHHHHHHHHhhcc------------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchHH-----hHH
Confidence            44 3233333211                        11222222333334444445555666666654441     444


Q ss_pred             hhhhhhhhH-HHhHHHHHHHHhhhcccccchhHHHHHH
Q 008182          182 FFSRFFFFI-SLGTLMAVTVLVYIQDEISRSVGYGICS  218 (575)
Q Consensus       182 ~~~~~~~~~-~ig~~l~~~i~~~l~~~~~~~~~f~~~~  218 (575)
                      ..+.+..+. ..|.+.+++..+.....++|...|+...
T Consensus       405 ~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~  442 (495)
T KOG2533|consen  405 TVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV  442 (495)
T ss_pred             HHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence            444444444 4444444555555666678888885433

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.07  E-value=5.5e-05  Score=82.69  Aligned_cols=178  Identities=11%  Similarity=-0.004  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhhHHHHHHHhhh--cCCCCc------hhhHHHHHHHHHHHHHHHHHH----HHHhhcccchHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVG--TMHLPS------ATSANIVTDFMGTSFLLCLLG----GFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~--~l~~~~------~~~~~~~~~~~~~~~~~~~~~----G~laDr~~Gr~~~~~~~~~~  101 (575)
                      .+.....+|.+...++.++..  ..+.+.      ...+++.++-.+...+..++.    +++.||+ +..+.+.+++++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            335556677777777776553  111111      124455555555555555555    6667776 777889999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+++.+.++++.....              + ...-+.+++.+..+++++|++...|...+++.+..|++.      |++
T Consensus       360 ~~l~f~~l~~~~~~~~--------------~-~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~  418 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN--------------D-AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGF  418 (500)
T ss_pred             HHHHHHHHHHHHHhcC--------------C-CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHH
Confidence            9999988877643211              0 011234578888999999999999999999999999998      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcc----------cccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQD----------EISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~----------~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      .+|.+.....+|..++..+.+....          ..++...|...++..++..++++...+
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998887777777777666643321          123667777666655544444444333

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.04  E-value=3.4e-05  Score=61.11  Aligned_cols=67  Identities=24%  Similarity=0.150  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 008182           34 ELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQ  102 (575)
Q Consensus        34 ~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~  102 (575)
                      .++...+...+.++++.|++ +.|+|..|.|.+.++..+...++++++|+++||+ ||+|.++....++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            33344444456789999988 5899999999999999999999999999999999 9888877765543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.01  E-value=1.4e-05  Score=84.28  Aligned_cols=174  Identities=7%  Similarity=-0.011  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q 008182           30 VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGML  109 (575)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~  109 (575)
                      +++......++...+.+++--+++ +++-.+..-|.....-..+-.+.-++.+++..|+ |+-+++.+++....+=++..
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~  453 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY  453 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence            455556666666666677766655 5676666677666666777778889999999999 99999999998888877777


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      +...                        |.|+.+..-+++|+..+..+.++.+++++..|++-      |.++.++....
T Consensus       454 S~L~------------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~  503 (618)
T KOG3762|consen  454 SYLQ------------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGI  503 (618)
T ss_pred             HHhc------------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHH
Confidence            7763                        47778888899999999999999999999999999      88888885554


Q ss_pred             -HHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          190 -ISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       190 -~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                       -.+|-.+|.+++|.+.+.++-+..|.+.++..++.++......+..
T Consensus       504 f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l  550 (618)
T KOG3762|consen  504 FHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLL  550 (618)
T ss_pred             hcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             5899999999999999999999999998888777777665554433

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.97  E-value=0.0023  Score=65.07  Aligned_cols=159  Identities=17%  Similarity=0.185  Sum_probs=92.8

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh-----cccchHHH
Q 008182           20 KTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLAD-----TFLGRYKT   94 (575)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----r~~Gr~~~   94 (575)
                      .++..+.+..+++..+...+- +|....+ +++-+.-|.|-++.+....++.  =+-.-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP-~GL~~~i-P~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIP-LGLIGAI-PLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCc-hhHhhhh-HHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            445556777777777766544 4566644 4444466888777665443332  2244678888999     88 99998


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChH
Q 008182           95 IAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK  174 (575)
Q Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  174 (575)
                      -++-. -+.+|.++..++...+.     +     +..+. ..++...+....+++-+..+.---++-...-.+..+++  
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~-----~-----~g~ng-~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~--  166 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDR-----G-----LGGNG-GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN--  166 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCc-----c-----cccCC-CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh--
Confidence            76653 34566666666643322     1     11111 11222222223344444444444455565666666677  


Q ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHH
Q 008182          175 EKTQMAYFFSRFFFFISLGTLMAVTVL  201 (575)
Q Consensus       175 ~~~~r~~~~~~~~~~~~ig~~l~~~i~  201 (575)
                          .+.+......+.+.|.+++..+.
T Consensus       167 ----lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 ----LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             ----cCchhHHHHHHHhhhHHhhccee
Confidence                77777777778888888886554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.97  E-value=8.2e-05  Score=81.03  Aligned_cols=107  Identities=13%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHhHHHhh-hhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHH
Q 008182          372 FVSAILITLAVYDRLIMP-LWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIP  450 (575)
Q Consensus       372 ~~~~~~i~~~l~~~~~~~-l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  450 (575)
                      ......+..++.+++.|+ +.+|          +.+.+|.++.+++.+.+++..                  .....+++
T Consensus        59 ~~~~~~~~~~~~G~laDr~~G~r----------~~~~~g~~~~~~g~~~~~~~~------------------~~~~ll~~  110 (489)
T PRK10207         59 FAALVYGLISIGGYVGDHLLGTK----------RTIVLGAIVLAIGYFMTGMSL------------------LKPDLIFI  110 (489)
T ss_pred             HHHHHHHHHhhHHHhhhhccchH----------HHHHHHHHHHHHHHHHHHHhc------------------cchhHHHH
Confidence            344444555666776655 4443          447889988888887776541                  11222446


Q ss_pred             HHHHHHHHHHHhhhhhhheecccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008182          451 QFFLVGAGEAFIYTGQLDFFITKSPKG--MKTMSTGLFLTTLSLGFFVSSFLVAVVKK  506 (575)
Q Consensus       451 ~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~l~~~v~~  506 (575)
                      ..++.++|.++..|...+++.+.+|++  .|+.+.+++.+..++|..+|+.+.+++.+
T Consensus       111 ~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        111 ALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             HHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999877  45778999999999999999999998864

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.00034  Score=72.74  Aligned_cols=163  Identities=14%  Similarity=0.157  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc---cchHHHHHHH-HH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF---LGRYKTIAIF-AA  100 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~---~Gr~~~~~~~-~~  100 (575)
                      +.++.+..+.+...+++-.=..++++|+. .+|.+.+-.+.+-.+-.+...+.+|+.|..+||+   +||||-++.. ..
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56777777777777877766788999988 7899999999999999999999999999999986   5888866665 45


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccc----hhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASG----FQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEK  176 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~  176 (575)
                      ..+++.++..++....           +..++.+..    .....++++.-+.=+.+-.....+-++++|+..++++   
T Consensus       111 ~i~~~l~Lig~aaDig-----------~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~---  176 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIG-----------LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK---  176 (498)
T ss_pred             HHHHHHhhhhhHhhhh-----------HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh---
Confidence            5666777777774322           233444433    4456677777777788777788889999999876662   


Q ss_pred             hhhhhhhhhhhhhHHHhHHHHHHHHhhh
Q 008182          177 TQMAYFFSRFFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       177 ~~r~~~~~~~~~~~~ig~~l~~~i~~~l  204 (575)
                        +.++.+++...+.+|+.+|-..+++.
T Consensus       177 --~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  177 --KTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             --hhccchhHHHHHHhcceeeeeccccc
Confidence              22288888888899999887777644

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.92  E-value=0.0091  Score=64.14  Aligned_cols=163  Identities=12%  Similarity=0.090  Sum_probs=99.9

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCC-----CchhhHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHL-----PSATSANIVTDFMGTSFLL-CLLGGFLADTFLGRYKTIAI   97 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~-----~~~~~~~~~~~~~~~~~~~-~~~~G~laDr~~Gr~~~~~~   97 (575)
                      +|.++...+..||-.+.|+.+.+     ++|.+..     +.....++-+...+...+. .++-+++++|+ +|++.+.+
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~   79 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT   79 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence            45566666777777776664432     3555554     3356666666665554544 78899999998 99999988


Q ss_pred             HHHHHHHHHHHHHHHhhhcc---cCCC-CCCCcCcccccCccch----------hhHHHHHHHHHHHHccccccc-chhc
Q 008182           98 FAAVQTLGTGMLAMVTKLRQ---LRPR-PCKETATHTCEQASGF----------QMGVLYIALYLIALGTGGLKS-SVSG  162 (575)
Q Consensus        98 ~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~g~g~g~~~~-~~~~  162 (575)
                      ....+.....+.++.-. |.   +++. .||+   .....|.+.          ....+++   ...+-.....+ .-.+
T Consensus        80 ~~~~F~~~f~lF~~vl~-p~~~~~~p~~~~~~---~~~~~~~~~~~~i~~~~~W~~~~FYv---~~elw~~~vvS~lFW~  152 (472)
T TIGR00769        80 VISPFLGFFALFAFVIY-PLSDLLHPTALADK---LLSLLPPGFMGFIAILRIWSFALFYV---MAELWGSVVLSLLFWG  152 (472)
T ss_pred             HHHHHHHHHHHHHHHHh-cchhhcCCcHHHHH---HHhhcchhhHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHH
Confidence            87777776666655521 21   1110 0000   000011101          1112222   22222223333 5678


Q ss_pred             cccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhc
Q 008182          163 FGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQ  205 (575)
Q Consensus       163 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~  205 (575)
                      +..|.++.++      -.|.++++..+.|+|..+++.+..++.
T Consensus       153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888      789999999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.89  E-value=2.1e-07  Score=100.10  Aligned_cols=185  Identities=14%  Similarity=0.099  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG  105 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~  105 (575)
                      .....+....+..+..+....+..+++.+..+.+..  -.......+...++.+++.++.||+ |||++++++..+.++.
T Consensus       253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence            444445555555555544555555666667777776  2223344455667778888999999 9999999999888887


Q ss_pred             HHHHH-HHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          106 TGMLA-MVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       106 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      .+.++ ...-.+.               .++..+................+..+....+.+|.||.+.      |.++.+
T Consensus       330 ~~~~~~~~~~~~~---------------~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~  388 (451)
T PF00083_consen  330 SLILGIIFFLGVS---------------SSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIG  388 (451)
T ss_pred             ccccccccccccc---------------cccccccccceeeeeccccccccccccccccccccccccc------cccccc
Confidence            76664 1100000               0000011111111111112222344666688899999999      999999


Q ss_pred             hhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcc
Q 008182          185 RFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKR  234 (575)
Q Consensus       185 ~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  234 (575)
                      +.+....+++.+++.+..++.+..+-...|.+.++..++..+...+..|+
T Consensus       389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpE  438 (451)
T PF00083_consen  389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPE  438 (451)
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEee
Confidence            99999999999999888888877663455555555555555554444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=97.87  E-value=2.9e-05  Score=84.09  Aligned_cols=143  Identities=9%  Similarity=-0.134  Sum_probs=110.1

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCccccc
Q 008182           53 VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCE  132 (575)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  132 (575)
                      .+.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++........+..++              
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~--------------  344 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNL--------------  344 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccc--------------
Confidence            457999999999999999999999999999999998 99999999998888876554321110000              


Q ss_pred             CccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccccc---
Q 008182          133 QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEIS---  209 (575)
Q Consensus       133 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~---  209 (575)
                      .....+........++.+++.+........++.+..|++.      +++.++++....++|..+++.+++++.+..|   
T Consensus       345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~  418 (468)
T TIGR00788       345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITC  418 (468)
T ss_pred             ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            0000112234444567777777777778899999999998      9999999999999999999999999988877   


Q ss_pred             --chhHHHH
Q 008182          210 --RSVGYGI  216 (575)
Q Consensus       210 --~~~~f~~  216 (575)
                        ++..+..
T Consensus       419 ~~~~~~~~~  427 (468)
T TIGR00788       419 DNSNNLWLL  427 (468)
T ss_pred             ccccchHHH
Confidence              6655543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.80  E-value=0.00028  Score=76.35  Aligned_cols=135  Identities=14%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             cchhHHHHHHHHHHhHHHhhh-hhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhh
Q 008182          370 VFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLL  448 (575)
Q Consensus       370 ~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  448 (575)
                      ........+..++.+++.||+ .+|          +.+.+|.++.+++.+.++..                  ..+...+
T Consensus        52 ~~~~~~~~l~~ligG~LaDRilGrr----------r~iliG~il~~lg~lll~~~------------------~~~~~~~  103 (493)
T PRK15462         52 SAYCSLVYVTPILGGFLADKVLGNR----------MAVMLGALLMAIGHVVLGAS------------------EIHPSFL  103 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcH----------HHHHHHHHHHHHHHHHHHHh------------------hcchhHH
Confidence            333444455556667776665 333          33677888888776655432                  1111223


Q ss_pred             HHHHHHHHHHHHHhhhhhhheecccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccch
Q 008182          449 IPQFFLVGAGEAFIYTGQLDFFITKSPKG--MKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  526 (575)
Q Consensus       449 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~  526 (575)
                      .....+..+|.++..|...+++.+.+|++  .|+++.++.....++|+.+++.+.+.+.+..      +|          
T Consensus       104 ~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------  167 (493)
T PRK15462        104 YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------  167 (493)
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------
Confidence            33444555677777777788899999875  7999999999999999999999999875422      33          


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhh
Q 008182          527 DLFYGLLAILSIINLVIYLICA  548 (575)
Q Consensus       527 ~~~f~~~a~l~~v~~~~~~~~~  548 (575)
                      +..|.+.++.++++.+.++...
T Consensus       168 ~~~F~iaaigm~l~li~~~~~~  189 (493)
T PRK15462        168 AMGFGLAAVGMIAGLVIFLCGN  189 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            5666666555555555554433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.77  E-value=0.00041  Score=76.13  Aligned_cols=193  Identities=16%  Similarity=0.068  Sum_probs=111.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           22 GGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      ..+|.....+.+..+..++.+....+....+-+..|.+... .+...+..+...++..++.++.||+ |||+.++.+...
T Consensus       291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~  368 (513)
T KOG0254|consen  291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG  368 (513)
T ss_pred             chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence            34555555555566655555544444444445566766554 5556666777778888889999999 999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      +.++.++++........         +..  .........+....+.......+..|....+.+|.+|.+.      |++
T Consensus       369 m~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~  431 (513)
T KOG0254|consen  369 MSICLVILAVVGVFALY---------YPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSK  431 (513)
T ss_pred             HHHHHHHHHHHHHHhcc---------CCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------Hhh
Confidence            99999888876432110         000  0000111112111222222223344555678899999998      888


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHH-HHHhcCc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAII-IFLAGTK  233 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~  233 (575)
                      +.++......+...+.......+.+..++...|...+........ ...+..|
T Consensus       432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~p  484 (513)
T KOG0254|consen  432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVP  484 (513)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcc
Confidence            888866555544444433333443333345555555555454444 3444444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.56  E-value=8.1e-05  Score=77.31  Aligned_cols=181  Identities=11%  Similarity=0.008  Sum_probs=124.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHH--------HHHHHHHHHHH-HHHHHHHHhhcccchHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSAN--------IVTDFMGTSFL-LCLLGGFLADTFLGRYKTI   95 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~--------~~~~~~~~~~~-~~~~~G~laDr~~Gr~~~~   95 (575)
                      +.+...+...|...+.+|+...+...-+. .+|+.+.+...        ...+....+.+ +-++...+.|++ |||++.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            55666777777888888888777666554 44554433222        22222333333 566778889998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHh
Q 008182           96 AIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKE  175 (575)
Q Consensus        96 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~  175 (575)
                      +-+.+++++..+.++..-+             ++.      .....+...-+.+-+++-+.......+-+|.||.+.   
T Consensus       382 ~~GF~~~~i~~~~~~~~y~-------------~~~------~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv---  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYN-------------QLE------NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV---  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCcc-------------ccc------ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH---
Confidence            9999999988777766421             111      111111111222334444444455566699999999   


Q ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc-----cccchhHHHHHHHHHHHHHHHHHhcC
Q 008182          176 KTQMAYFFSRFFFFISLGTLMAVTVLVYIQD-----EISRSVGYGICSVAMFMAIIIFLAGT  232 (575)
Q Consensus       176 ~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~-----~~~~~~~f~~~~~~~~~~~~~~~~~~  232 (575)
                         |+...++...++-.|++++.....++.+     ..+.+.+|++.+...+++.+..++..
T Consensus       440 ---R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p  498 (538)
T KOG0252|consen  440 ---RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP  498 (538)
T ss_pred             ---hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence               9999999999999999999999999998     77899999998888887777765553

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.51  E-value=0.0023  Score=68.06  Aligned_cols=107  Identities=15%  Similarity=0.053  Sum_probs=82.4

Q ss_pred             cccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehh
Q 008182          368 LTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFL  447 (575)
Q Consensus       368 ~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (575)
                      +.......-.++....+++.+++..|          +.+.++.+..++..++.++.                   .+...
T Consensus        67 I~s~F~ysYal~qIp~GlLaDrlG~K----------~vL~l~~l~Wsl~t~L~~fa-------------------~Sl~~  117 (511)
T TIGR00806        67 IIPVLPYSHLAVLVPVFLLTDYLRYK----------PVLVLQALSFVCVWLLLLLG-------------------TSVWH  117 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCch----------HHHHHHHHHHHHHHHHHHHH-------------------HHHHH
Confidence            33344444555555556664444433          33677777777777777664                   24556


Q ss_pred             hHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008182          448 LIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVV  504 (575)
Q Consensus       448 li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v  504 (575)
                      +.+.-+++|++|+... +...++++.+|++.|++++|+++....+|.++++.+++.+
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999 9999999999999999999999999999999999999983

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.50  E-value=0.001  Score=70.88  Aligned_cols=159  Identities=15%  Similarity=0.087  Sum_probs=105.0

Q ss_pred             cccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccc-e
Q 008182          366 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPV-S  444 (575)
Q Consensus       366 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  444 (575)
                      ++..+...++..+..|.++..    ..|..     +-.+-+.+|.+++.++.+++...+..               +. .
T Consensus        74 G~viaa~slg~~i~~liF~~W----s~k~~-----~~k~Pli~s~ii~~~g~llY~~l~~~---------------~~~~  129 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIW----SNKTG-----SVKKPLIVSFLIAIIGNLLYLALAYV---------------PNGV  129 (488)
T ss_pred             hHHHHHHHHHHHhcchhhccc----ccccC-----CcccCHHHHHHHHHHHHHHHHHHHhc---------------ccch
Confidence            445556777777777777655    22322     11222899999999999999666432               23 4


Q ss_pred             ehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC-CCcc
Q 008182          445 VFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINR  523 (575)
Q Consensus       445 ~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~-~~~~  523 (575)
                      -+++.+..++.|+|.+.. ...-.|+++..-.+.|-++++..+..+.+|..+||.+-..+..+.+++  -.|+++ .+|.
T Consensus       130 ~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G--~~i~~~~~~n~  206 (488)
T KOG2325|consen  130 KYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKG--FMILPGLIFNM  206 (488)
T ss_pred             HHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCc--eEEcCcceEEe
Confidence            566788899999886533 456677777666667777888777777788888877777665554432  234442 2332


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008182          524 GRLDLFYGLLAILSIINLVIYLICAVWYKP  553 (575)
Q Consensus       524 ~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  553 (575)
                        +...-|+++.+.++..++.+++.+|..+
T Consensus       207 --YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  207 --YTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             --cchHHHHHHHHHHHHHHHHHhheeeccc
Confidence              3444578888888888888777776543

>PTZ00207 hypothetical protein; Provisional

Probab=97.35  E-value=0.0023  Score=70.57  Aligned_cols=116  Identities=12%  Similarity=0.096  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHH
Q 008182          403 LQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMS  482 (575)
Q Consensus       403 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~  482 (575)
                      ++.+.+|.++..++.++.++....             .-..+.+.+.+..++.|+|++..++.....+.+.+| +.||++
T Consensus        91 R~vllig~ll~~iG~ll~ala~~~-------------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a  156 (591)
T PTZ00207         91 RPIFVLSMTVFCLGTLLFALTFQE-------------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAV  156 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHH
Confidence            344788999999999887764110             001345556778889999999998888888888887 679999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       483 ~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                      +|+......+|..+.+.+...+..       .+|          ..+|++.+++.++..++.+.+.+
T Consensus       157 ~Gi~~~~~gLGsaI~~~l~~~l~~-------~~~----------~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        157 VAIMKTFTGLGSAILGSIQLAFFS-------DNT----------SAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HhH----------HHHHHHHHHHHHHHHHHHHhhee
Confidence            999999999999865555444332       012          45567777777776666655544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.26  E-value=0.0038  Score=56.62  Aligned_cols=112  Identities=13%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchh
Q 008182           59 PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQ  138 (575)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (575)
                      +....-.-.++.+....+.++++..+.+++ |.|++++++.+.+.+-..... -   |                     +
T Consensus        35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~-~---~---------------------~   88 (156)
T PF05978_consen   35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFF-Y---P---------------------N   88 (156)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH-h---h---------------------h
Confidence            334444555666777788888889999998 999999999887776433322 1   2                     3


Q ss_pred             hHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          139 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       139 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                      ...++.+-++.|+|.+..+.+...++.+..++++      |++..+++....+.+.++|.++.-
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6678889999999999999999999999887777      888888877777777777765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.24  E-value=0.0048  Score=64.40  Aligned_cols=185  Identities=12%  Similarity=0.013  Sum_probs=115.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.+.++.+........+|++.+.+-.-+ ..-|++...+|.+.....+.+.++.+++|.++||..+-|.++++......+
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            3455555555555555555544443222 345788889999999999999999999999999985556666666666556


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhcccccc-CCCCChHhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQ-FDEKDEKEKTQMAYFF  183 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~  183 (575)
                      +...+...+..+                    .....++..-.++|.......|.-.-+..|. +|..+       +.-.
T Consensus       345 ~~~~l~~~t~~~--------------------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSs  397 (480)
T KOG2563|consen  345 GTLMLLTCTLFL--------------------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSS  397 (480)
T ss_pred             HHHHHHHhhccC--------------------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccc
Confidence            543222221111                    1234455555566666666777777777666 55555       4556


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc----chhHHHHHHHHHHHHHHHHHhcCccccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS----RSVGYGICSVAMFMAIIIFLAGTKRYRY  237 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~~~~  237 (575)
                      |+.....++-+.+=..+.+...+..+    |...-+......+..+++..+.++++++
T Consensus       398 Gll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  398 GLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             eeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            67666666666666667777777666    4433344444555555665666665544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.11  E-value=0.0054  Score=67.52  Aligned_cols=157  Identities=14%  Similarity=0.064  Sum_probs=110.6

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCch---hhHHHHHHHHHHHHHHHHHHHHHhhcccchHH-H
Q 008182           19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSA---TSANIVTDFMGTSFLLCLLGGFLADTFLGRYK-T   94 (575)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~-~   94 (575)
                      ++.++.|.+...+++.+.....+|.+..+.|......++.+..   +.++....+.++..+++++.|.+.-++ +|-| .
T Consensus       304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~  382 (599)
T PF06609_consen  304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQ  382 (599)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHH
Confidence            4444567888888889999988999888888877766666653   567888888888889999999999887 7655 4


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChH
Q 008182           95 IAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK  174 (575)
Q Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  174 (575)
                      ++++..++.++..+++.. + |                  +  |....+...++.|+|.|...........-..|++.  
T Consensus       383 li~~~~~~ta~~Gama~~-~-~------------------~--n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~--  438 (599)
T PF06609_consen  383 LIFGSVLMTAFCGAMAAV-R-P------------------D--NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED--  438 (599)
T ss_pred             HHHHHHHHHHHHHHHHHc-c-C------------------C--CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH--
Confidence            456666666655555433 1 1                  1  22223455667788888766555555555567666  


Q ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHHhhh
Q 008182          175 EKTQMAYFFSRFFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       175 ~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l  204 (575)
                          .+.+.++....-.+|+.+|..+-.-+
T Consensus       439 ----ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  439 ----IGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             ----HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                88999888888888888876655433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.02  E-value=0.0046  Score=63.17  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHh-hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYL-VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGR-YKTIAIFAAVQT  103 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr-~~~~~~~~~~~~  103 (575)
                      ..+.++....+...-.|...-+...++ .+.+|+++.|.|-+.+...+...+.+..-+...||.+|. +..+..++.++.
T Consensus       261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v  340 (451)
T KOG2615|consen  261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence            345555554444444443434444444 568999999999998888888888888888888988443 445555555555


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      -..++.+.+.+                        ...++++..+-.+..+...++...++....|++.      ||...
T Consensus       341 P~~llls~~~~------------------------~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~  390 (451)
T KOG2615|consen  341 PAFLLLSLART------------------------PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLN  390 (451)
T ss_pred             HHHHHHhcccc------------------------chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHH
Confidence            55556655522                        5568888889999989999999999999999888      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDE  207 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~  207 (575)
                      |+....+.++-++||.++|.+..+
T Consensus       391 Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  391 GIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHHHHHHHHHhhhhhhheeEEE
Confidence            999999999999999999988663

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.87  E-value=0.01  Score=47.59  Aligned_cols=67  Identities=12%  Similarity=0.057  Sum_probs=59.5

Q ss_pred             HHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHh
Q 008182           46 VNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVT  113 (575)
Q Consensus        46 ~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~  113 (575)
                      +.+-+.+.++.++|.++.+++-+.-++++.++.+...++.++. .+++.+..+++...+.++.+++..
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455667789999999999999999999999999999999997 889999999999999888888763

Note that many members are hypothetical proteins.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.83  E-value=0.0048  Score=69.22  Aligned_cols=96  Identities=24%  Similarity=0.425  Sum_probs=77.1

Q ss_pred             CCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 008182          438 TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWL  517 (575)
Q Consensus       438 ~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~  517 (575)
                      .++++.+.+|.++++++.++||.+...+.+++.++++|+++|....+++.+..++|+.+...+..+-.            
T Consensus       558 ~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~------------  625 (654)
T TIGR00926       558 VSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFEN------------  625 (654)
T ss_pred             cCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------
Confidence            55667899999999999999999999999999999999999999999999999999999988776421            


Q ss_pred             cCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          518 ADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       518 ~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                         .++  ...-|..+++++++..+++.++++.
T Consensus       626 ---~~~--~~~~~~~~~~~~~~~~~~f~~~a~~  653 (654)
T TIGR00926       626 ---FSV--QAAEFFLFASLMLVVMAIFSILAYF  653 (654)
T ss_pred             ---ChH--HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               101  1233566677777666666666543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.74  E-value=0.006  Score=65.53  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=117.7

Q ss_pred             CcchhHHHHHHHHHHHHHHH-hhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           23 GWVPAALVLGIELCERLSTM-GIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      +.|..+.+++..+.....-. +..-.+..|+..+++++..+.+...+.......+++++...+--+.+|-|+++.+|+..
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            34445554444444333222 22224467888899999999999999999999999988885544445999999999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      ..+...+.++++.                        .++.+.+..+.++. +...|...++.+.+.++++      +|+
T Consensus       318 ~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e------~g~  366 (463)
T KOG2816|consen  318 EFLQLLLFAFATE------------------------TWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE------QGK  366 (463)
T ss_pred             HHHHHHHHHHhcc------------------------chhhhHHHHHHHhh-cchhHHHHhHHHhhccccc------ccc
Confidence            9999999999843                        55566666665555 6677999999999999999      999


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      .+++....-.+.+.++|.+-+.+..
T Consensus       367 v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  367 VFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            9999999999999999888877744

>PRK03612 spermidine synthase; Provisional

Probab=96.44  E-value=0.089  Score=57.68  Aligned_cols=170  Identities=12%  Similarity=0.046  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH---HHHH
Q 008182           33 IELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLG---TGML  109 (575)
Q Consensus        33 ~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~---~~l~  109 (575)
                      +.+...++.-.......-.+...+|-+..+.+.+++++.++..++..++|+++++. -|+. ..+-+.+..++   ..++
T Consensus        22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~-~~~e~~i~l~~~~~~~ll   99 (521)
T PRK03612         22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGF-VAVELLLALLGGLSALIL   99 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHH-HHHHHHHHHHHHHHHHHH
Confidence            33344444444445555566667788999999999999999999999999887554 2222 22211111111   1111


Q ss_pred             HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhh
Q 008182          110 AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF  189 (575)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  189 (575)
                      ........                   .....++...++.++-.|+..|....+..+... ++      -++..|..|.+
T Consensus       100 ~~~~~~~~-------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~  153 (521)
T PRK03612        100 YAAFAFQG-------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAA  153 (521)
T ss_pred             HHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhH
Confidence            11100000                   001112233344566666666665555443221 12      35667788888


Q ss_pred             HHHhHHHHHHHHhhhcc-cccch-hHHHHHHHHHHHHHHHHHh
Q 008182          190 ISLGTLMAVTVLVYIQD-EISRS-VGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       190 ~~ig~~l~~~i~~~l~~-~~~~~-~~f~~~~~~~~~~~~~~~~  230 (575)
                      ..+|+++|.++.+++.- ..|-. ..+.++.+-.+++++.++.
T Consensus       154 ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~  196 (521)
T PRK03612        154 DYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWL  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888654 56644 4444443333444444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.41  E-value=0.00051  Score=75.43  Aligned_cols=134  Identities=16%  Similarity=0.185  Sum_probs=3.0

Q ss_pred             cccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhCC----
Q 008182          366 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSV----AR-AVGL----  436 (575)
Q Consensus       366 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~-~~~~----  436 (575)
                      +.+...+-+..++...++.++    .+|.      ++.+.+.+|.++++++.+++++-+......    .. ..+.    
T Consensus        41 G~i~s~~di~~~~~~~~vsy~----g~~~------hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~  110 (539)
T PF03137_consen   41 GLISSSYDIGSLVVVLFVSYF----GGRG------HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSIS  110 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----hhhc------CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccc
Confidence            344555556666666555555    3331      234558889999999988887653221100    00 0000    


Q ss_pred             --------------------C--CCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHH
Q 008182          437 --------------------T--TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGF  494 (575)
Q Consensus       437 --------------------~--~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~  494 (575)
                                          +  .........++++..++.|+|....++...+|+.|.++++..+.+.|+......+|.
T Consensus       111 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGP  190 (539)
T PF03137_consen  111 SNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGP  190 (539)
T ss_dssp             -----------------------------------------SSS------------------------------------
T ss_pred             cccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccH
Confidence                                0  111112245677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcC
Q 008182          495 FVSSFLVAVVKKVTG  509 (575)
Q Consensus       495 ~lg~~l~~~v~~~~~  509 (575)
                      .+|-.+.+...+.+.
T Consensus       191 a~Gf~lg~~~L~~yv  205 (539)
T PF03137_consen  191 ALGFLLGSFCLRIYV  205 (539)
T ss_dssp             ---------------
T ss_pred             HHHHHHHHHHHhcee
Confidence            999888887776554

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.27  E-value=0.039  Score=61.64  Aligned_cols=106  Identities=15%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccch
Q 008182          447 LLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRL  526 (575)
Q Consensus       447 ~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~  526 (575)
                      .++...++.|+|+...+|...+|+.|.+-++....+.|+......+|.++|-+++++..+++.+.+..+ ...+.++..-
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~-~~it~~DPrW  317 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSP-IGITPTDPRW  317 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCC-CCCCCCCcch
Confidence            456789999999999999999999999999999999999999999999999999999888776541000 0001111111


Q ss_pred             hHH----HHHHHHHHHHHHHHHHhhhhhcCC
Q 008182          527 DLF----YGLLAILSIINLVIYLICAVWYKP  553 (575)
Q Consensus       527 ~~~----f~~~a~l~~v~~~~~~~~~~~~~~  553 (575)
                      ...    |.+.+.+.++..+.++++-++..+
T Consensus       318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  318 IGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            122    455566666666666666555443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.22  E-value=0.089  Score=57.80  Aligned_cols=121  Identities=10%  Similarity=0.046  Sum_probs=81.4

Q ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCc
Q 008182           55 TMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQA  134 (575)
Q Consensus        55 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (575)
                      .+|.+......+...   .........+.+.|++ |||.....+..+..++.+..++....                   
T Consensus       347 ~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~~~~~~~~~~~~-------------------  403 (521)
T KOG0255|consen  347 GLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGIGLLLFGWLPDD-------------------  403 (521)
T ss_pred             hcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHhhcc-------------------
Confidence            455444433333332   4445556668999998 99999999999999998888876321                   


Q ss_pred             cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          135 SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       135 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                        .+.....+...+...+.+..........+|++|+..      |..+.+.......+|.+++|.+......
T Consensus       404 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  404 --LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             --chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              111112222223333333334445788899999998      9999999999999999999988765544

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.37  E-value=0.36  Score=51.41  Aligned_cols=134  Identities=11%  Similarity=-0.032  Sum_probs=103.1

Q ss_pred             HHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 008182           45 AVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCK  124 (575)
Q Consensus        45 ~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  124 (575)
                      -..+..|+..+ |+++...|..-+.-.+....+.....++-+|+ |..|+=++++....+...++..+--.|.       
T Consensus       278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~-------  348 (432)
T PF06963_consen  278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG-------  348 (432)
T ss_pred             cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence            45678899977 99999999999999999999999999999999 9999999999888777666555422222       


Q ss_pred             CcCcccccCc-cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHH
Q 008182          125 ETATHTCEQA-SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVL  201 (575)
Q Consensus       125 ~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~  201 (575)
                              .+ .......++.+.++-=+|--++--+...++.|..|+++      |+...+......++.-.+-..++
T Consensus       349 --------~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~  412 (432)
T PF06963_consen  349 --------SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLT  412 (432)
T ss_pred             --------CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                    11 22344555555555556666677788888999999888      99999998888888777765443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.35  E-value=4.4  Score=42.50  Aligned_cols=58  Identities=17%  Similarity=0.140  Sum_probs=46.7

Q ss_pred             ceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 008182          443 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFL  500 (575)
Q Consensus       443 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l  500 (575)
                      .+.+|.+....++|+..+-.....+.++.+.+|++.+-.+..+..+.-..|-..|..+
T Consensus       341 ~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  341 ESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             cCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3456778888899998888888899999999999988888888777777777766554

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.93  E-value=0.28  Score=48.21  Aligned_cols=92  Identities=20%  Similarity=0.253  Sum_probs=64.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhH
Q 008182          401 TNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT  480 (575)
Q Consensus       401 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg  480 (575)
                      .+...+.+|.+...+++....+.-..+            .+..+.+.+.+..++.+.+....+++......+.+|+ .||
T Consensus        64 gp~~~l~iG~~~~~~GY~~~~l~~~~~------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG  130 (250)
T PF06813_consen   64 GPWVVLLIGAVLGFVGYGLLWLAVSGR------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRG  130 (250)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCc------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccC
Confidence            445557888888888887776543210            0113344455556666677777777776667788885 699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182          481 MSTGLFLTTLSLGFFVSSFLVAVVK  505 (575)
Q Consensus       481 ~~~g~~~~~~~lg~~lg~~l~~~v~  505 (575)
                      ++.|+.-....+++.+-+.+...+.
T Consensus       131 ~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  131 TVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ceehhhhHHHHhHHHHHHHHHHHHc
Confidence            9999999999999988888777654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=94.59  E-value=0.25  Score=52.69  Aligned_cols=168  Identities=13%  Similarity=0.052  Sum_probs=110.5

Q ss_pred             HHHHHHhhhcCCCC----chhhHHHHHHHHHHHHHHHHHHHHHhhcccchH-------HHHHHHHHHHHHHHHHHHHHhh
Q 008182           46 VNLVTYLVGTMHLP----SATSANIVTDFMGTSFLLCLLGGFLADTFLGRY-------KTIAIFAAVQTLGTGMLAMVTK  114 (575)
Q Consensus        46 ~~l~~yl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~-------~~~~~~~~~~~~~~~l~~~~~~  114 (575)
                      +.+..|..+.-+.+    +-..++..+.-.+...+..|+..++--+. +++       .-+-+++++...+.+++.....
T Consensus       305 ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~  383 (498)
T COG3104         305 SSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGI  383 (498)
T ss_pred             chHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            44556665543322    23344566666666777777777777774 443       2455666667777666555411


Q ss_pred             hcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhH
Q 008182          115 LRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGT  194 (575)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~  194 (575)
                      ...              +..+.....+++.+.+++++|+=+..|.-.++++...|++-      .+..++.+......|.
T Consensus       384 ~~~--------------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~  443 (498)
T COG3104         384 WFG--------------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQ  443 (498)
T ss_pred             hhc--------------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHH
Confidence            000              00223447788899999999999999999999999999877      7888888888888888


Q ss_pred             HHHHHHHhh------hcccccchhHHHHHHHHHHHHHHHHHhcCcc
Q 008182          195 LMAVTVLVY------IQDEISRSVGYGICSVAMFMAIIIFLAGTKR  234 (575)
Q Consensus       195 ~l~~~i~~~------l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  234 (575)
                      .++..+.+.      ..+.......|+..+...++..+.+....|+
T Consensus       444 ~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~  489 (498)
T COG3104         444 TLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK  489 (498)
T ss_pred             HhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            887766663      2233456777887777766665555555443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.42  E-value=0.26  Score=51.64  Aligned_cols=124  Identities=17%  Similarity=0.220  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcc---hhHH
Q 008182          405 RMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG---MKTM  481 (575)
Q Consensus       405 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~---~rg~  481 (575)
                      .+..|.++..+|.+++.+.....          ......+...+.+..++.++|.+..=|....+..++++++   .|..
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~----------~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~   72 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPP----------SLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDS   72 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSS----------SC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcc----------hhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhh
Confidence            47788889999988865542100          0001233456788889999999999999999999999866   4555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 008182          482 STGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKPK  554 (575)
Q Consensus       482 ~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~  554 (575)
                      ....+....++|..++..+.+++.+..      +          ....|.+.++.++++.+.++...++++..
T Consensus        73 ~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen   73 FFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred             hHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence            666778888999999988888775321      2          35667777777787777776665555544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=94.15  E-value=8.7  Score=41.75  Aligned_cols=167  Identities=13%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcC---CCCchhhHHHHHHH-HHHHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTM---HLPSATSANIVTDF-MGTSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l---~~~~~~~~~~~~~~-~~~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      ++.++.+.+..+|-.+.|..+     --++|.+   ..++.....+-... .=...+..++-.+++|++ +|.+++.+..
T Consensus        23 ~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~   96 (491)
T PF03219_consen   23 LKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII   96 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            455666766666665544322     2223322   12344444443322 224456677789999998 9999998887


Q ss_pred             HHHHHHHHHHHHHhhhcc---cCCC-CCCCcCcccccCccchhh-------HHHHHHHHHHHHccccccc-chhcccccc
Q 008182          100 AVQTLGTGMLAMVTKLRQ---LRPR-PCKETATHTCEQASGFQM-------GVLYIALYLIALGTGGLKS-SVSGFGTDQ  167 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~g~g~g~~~~-~~~~~~~~~  167 (575)
                      ..+.....+.++.- +|.   +++. .++..+.+   .+..-..       |.+.+..+..-+=.....+ .-.++..|.
T Consensus        97 ~~F~~fF~~f~~vl-yP~~~~lhp~~~~~~~~~~---~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i  172 (491)
T PF03219_consen   97 IPFLGFFALFAFVL-YPNRDILHPDAFADKLLAI---LPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI  172 (491)
T ss_pred             HHHHHHHHHHHHHH-hhchhhcCCCHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77766666555542 122   2221 11110000   1111110       0010111111111111122 346788888


Q ss_pred             CCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          168 FDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       168 ~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      ++.++      -.+.++++..+.|+|..++..+..++.+
T Consensus       173 tt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  173 TTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888      7899999999999999999888888876

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=94.02  E-value=10  Score=40.78  Aligned_cols=63  Identities=17%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          446 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVT  508 (575)
Q Consensus       446 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~  508 (575)
                      ..++..+++..+.....+.+..++.++++.+.+-||+|.+.|..+++|+..-..++-.+.+..
T Consensus       406 ~lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  406 LLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            345667888899999999999999999999999999999999999999887776665555433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.59  E-value=12  Score=40.09  Aligned_cols=59  Identities=12%  Similarity=0.158  Sum_probs=50.3

Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          444 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  502 (575)
Q Consensus       444 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  502 (575)
                      +-++.++..+++|+..+......+.+..+.++++.|..+..+..+.-.+|-..|+.+.-
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777999999999999999999999999999999999998888888888877643

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.54  E-value=0.63  Score=49.90  Aligned_cols=113  Identities=21%  Similarity=0.250  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccC---CcchhHHH
Q 008182          406 MAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKS---PKGMKTMS  482 (575)
Q Consensus       406 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~---P~~~rg~~  482 (575)
                      +.+|.++..++.+.++.....               ..+.....+..++..+|..+.....-+.+.|..   |.+ +|..
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~---------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~l  125 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS---------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDL  125 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc---------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHH
Confidence            677777776666666655221               123334455666677778877776666666555   555 8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          483 TGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       483 ~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                      ++.....+.+|+.++..+.|.+.+..+                .+..|.+.+.+..+..+..+++..+
T Consensus       126 qS~~~~~~~~G~lv~~~l~G~l~~~~~----------------~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  126 QSFVWGVRSVGSLVGSLLSGPLLDSFG----------------PQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcCC----------------CeEEehHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999988764322                1233555566666665555555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.34  E-value=0.28  Score=51.65  Aligned_cols=166  Identities=11%  Similarity=0.073  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCc
Q 008182          323 VARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTN  402 (575)
Q Consensus       323 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~  402 (575)
                      ++......+..-+.|..-.++.+.+.+. .....      ...+.+....++..++.+|+.+...|+-.-|+++||    
T Consensus        34 li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvph------k~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR----  102 (498)
T KOG0637|consen   34 LISVASIAAGVQFGWALELSYLTPYLQS-LGVPH------KWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR----  102 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCc------ccccccccccccccceeccccccccccccccccccc----
Confidence            3333344444455555544444444332 12211      123445667788888999999999888877766542    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHH-
Q 008182          403 LQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTM-  481 (575)
Q Consensus       403 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-  481 (575)
                       .-+.++....+++++++++..+....-.+.+.  .+.-+......++.+.++-++....+.+.-++..+..-.+.|-+ 
T Consensus       103 -PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~  179 (498)
T KOG0637|consen  103 -PFILAGSLLIAVSLFLIGYAADIGLLLGDNER--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTR  179 (498)
T ss_pred             -chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcc--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhc
Confidence             12677888888888888776443221111111  11223445556778888888888888889999998887777777 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008182          482 STGLFLTTLSLGFFVSSFLVA  502 (575)
Q Consensus       482 ~~g~~~~~~~lg~~lg~~l~~  502 (575)
                      +++++.+..++|+.+|-++.+
T Consensus       180 Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  180 ANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             cchhHHHHHHhcceeeeeccc
Confidence            999999999999999966554

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=92.48  E-value=1.5  Score=39.69  Aligned_cols=62  Identities=19%  Similarity=0.373  Sum_probs=53.4

Q ss_pred             eehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182          444 SVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  505 (575)
Q Consensus       444 ~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  505 (575)
                      +.+.+++.-++.|++.++..++.-.++.+...++.+++..++.......+..+|..+.-.+.
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999999999998888888888877765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=1.9  Score=46.12  Aligned_cols=133  Identities=15%  Similarity=0.090  Sum_probs=81.9

Q ss_pred             cCCCCchhhHHHH-HHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccc
Q 008182           55 TMHLPSATSANIV-TDFMGTSFLLCLLGGFLADTF--LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTC  131 (575)
Q Consensus        55 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~G~laDr~--~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  131 (575)
                      +++.+....-.+. .....+..++..+.+.+++|.  .||++++.++..+..++.++.-++.  |.      |..-+++.
T Consensus       272 ~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~------dap~~~t~  343 (461)
T KOG3098|consen  272 KLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PN------DAPLRPTD  343 (461)
T ss_pred             hccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cc------cCCCCCCc
Confidence            4444444333222 233455555666667776553  3899999999999999888776652  32      22112222


Q ss_pred             cCc--cchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHh
Q 008182          132 EQA--SGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV  202 (575)
Q Consensus       132 ~~~--~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~  202 (575)
                      +.+  .........+.-++.|++-++.......++++..| ++      |..+++++-.-..++..++.....
T Consensus       344 ~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~------~~~~fsi~kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  344 SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DD------RAQAFSLFKFYQSVASCVAFFFSP  409 (461)
T ss_pred             ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc------hHHHHHHHHHHHHHHHHHHhhhhh
Confidence            222  11223445555678899999999999999999994 45      677777766666666665544433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.50  E-value=1.5  Score=43.07  Aligned_cols=142  Identities=18%  Similarity=0.150  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhh
Q 008182           62 TSANIVTDFMGTSFLLCLLGGFLADTFLGRY--KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQM  139 (575)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (575)
                      .-|.+.+.|.+++.+++-+...+..|- ..|  ..+.+.+.+..... ++.+.++.                .+|+.+..
T Consensus       283 PhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l-~Lpilt~~----------------vsP~kes~  344 (454)
T KOG4332|consen  283 PHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAAL-LLPILTSS----------------VSPSKESP  344 (454)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHH-HHHHHHhc----------------cCCCcCCc
Confidence            457788888888888877777776654 221  23444444333332 22222221                23444555


Q ss_pred             HHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHH
Q 008182          140 GVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSV  219 (575)
Q Consensus       140 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~  219 (575)
                      ..-+++..++-.+.|.++|...-+=+...|++.      |...+.++..-.|+-..++-..----....+-|..|-++.+
T Consensus       345 ~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~  418 (454)
T KOG4332|consen  345 SESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA  418 (454)
T ss_pred             hHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence            566777778888899999999999899999988      99999999888887766553221111112345788888888


Q ss_pred             HHHHHHHH
Q 008182          220 AMFMAIII  227 (575)
Q Consensus       220 ~~~~~~~~  227 (575)
                      ...++.+.
T Consensus       419 ~~~~a~i~  426 (454)
T KOG4332|consen  419 FLFVASIL  426 (454)
T ss_pred             HHHHHHHH
Confidence            77777554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=88.70  E-value=38  Score=36.47  Aligned_cols=161  Identities=12%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC---CCchhhHHHHHHHHH-HHHHHHHHHHHHhhcccchHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMH---LPSATSANIVTDFMG-TSFLLCLLGGFLADTFLGRYKTIAIFA   99 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~---~~~~~~~~~~~~~~~-~~~~~~~~~G~laDr~~Gr~~~~~~~~   99 (575)
                      ++.+..+.+..+|..+.++.+.     -+++.+.   .++....++-....+ ...+..++-+++.+++ -|.+++.+.+
T Consensus        26 ~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~~   99 (509)
T COG3202          26 LKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYIIL   99 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHHH
Confidence            4556667777777766554332     2244333   345555566666655 6677888999999998 9999999988


Q ss_pred             HHHHHHHHHHHHHhhhcccCCCCCCCcCccc--------ccCccc----------hhhHHHHHHHHHHHHccccccc-ch
Q 008182          100 AVQTLGTGMLAMVTKLRQLRPRPCKETATHT--------CEQASG----------FQMGVLYIALYLIALGTGGLKS-SV  160 (575)
Q Consensus       100 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~~~~l~g~g~g~~~~-~~  160 (575)
                      ..+....+++++.-- |      +.+--|..        .+.|..          .....+++   ..-+=...+.. .-
T Consensus       100 ~~F~~fF~LFa~Vi~-P------~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi---~aELWgslV~S~lF  169 (509)
T COG3202         100 GFFLGFFALFAFVIY-P------YKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYI---MAELWGSLVLSLLF  169 (509)
T ss_pred             HHHHHHHHHHHHHHh-c------cccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHH---HHHHHHHHHHHHHH
Confidence            888888888877622 2      22211111        112211          01111111   11111111111 33


Q ss_pred             hccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcc
Q 008182          161 SGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQD  206 (575)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~  206 (575)
                      ..+..|..+.++      -.|.++.++...|++..++..+..++.+
T Consensus       170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            566778777777      7899999999999999999988888866

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=87.28  E-value=30  Score=37.43  Aligned_cols=59  Identities=8%  Similarity=-0.002  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhhh-hhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          449 IPQFFLVGAGEAFIYT-GQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKV  507 (575)
Q Consensus       449 i~~~~l~g~g~~~~~~-~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~  507 (575)
                      ...|+...+-..++.. ..|.++.|....++-.+..++.....++|..+++.+...+.+.
T Consensus       132 ~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       132 ALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455555555555554 8899999999999999999999999999999999998877643

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=85.42  E-value=49  Score=34.23  Aligned_cols=109  Identities=11%  Similarity=0.014  Sum_probs=61.0

Q ss_pred             cccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccee
Q 008182          366 GSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  445 (575)
Q Consensus       366 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (575)
                      +.+.........+++++.+.+.|+..||+.          -++-.++.++++++-.                    ..+.
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~----------cl~~cily~~scl~k~--------------------~~~~  121 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKKA----------CLLFCILYSLSCLTKH--------------------SSNY  121 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHH----------HHHHHHHHHHHHHHHh--------------------cccc
Confidence            344555667777888888888777776632          2333333344433211                    2345


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhheec-----ccCCcchhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 008182          446 FLLIPQFFLVGAGEAFIYTGQLDFFI-----TKSPKGMKTMSTGLFL-TTLSLGFFVSSFLVAVV  504 (575)
Q Consensus       446 ~~li~~~~l~g~g~~~~~~~~~~~~~-----~~~P~~~rg~~~g~~~-~~~~lg~~lg~~l~~~v  504 (575)
                      ..+++.=++.|++..+.+...=++..     +..|++..+.-.+... +.+++-.+.++.++..+
T Consensus       122 ~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  122 PVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            56778889999999988876555543     3345554444333333 22334444444444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.64  E-value=6.4  Score=41.46  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhh
Q 008182          139 MGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYI  204 (575)
Q Consensus       139 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l  204 (575)
                      .+..++..+..|+..|....+....+.+..++++      |.-.++...++-++|..++..++-++
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555556667788888888888888998888777      99999999999899999888776554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=84.53  E-value=13  Score=37.88  Aligned_cols=116  Identities=12%  Similarity=-0.004  Sum_probs=68.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      +...|.++++... +...+..|.=..++.+....++|  +...+.    .+..-...+++.+.+..++ |-|.++.++..
T Consensus        25 ~~~~knv~i~s~~-fl~~f~a~~gl~nlq~~vn~~lg--~~sl~~----~y~~l~~s~m~~~~~Ir~~-g~K~tm~lav~   96 (390)
T KOG3097|consen   25 LGILKNVLILSIA-FLLTFTAYLGLQNLQTSVNYDLG--TVSLGA----LYLSLIDSSMFMPLLIRFL-GTKWTMVLAVF   96 (390)
T ss_pred             cchhhhhhHHHHH-HHHHHHHHHHHHHHHHHHhcCcc--cchhhh----hhHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence            3444566655543 33444444444566666555443  222222    2333344455555666665 99999988876


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCC
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFD  169 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~  169 (575)
                      .+....     +.++   .                 +.+..++-+-.+.|+|.+..+.+-.+++++.-+
T Consensus        97 ~Y~lyi-----A~Nl---~-----------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   97 PYALYI-----AANL---E-----------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHH-----Hhhc---c-----------------hhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            665532     2221   1                 124456777788999999999988888887654

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.37  E-value=28  Score=35.30  Aligned_cols=47  Identities=13%  Similarity=0.235  Sum_probs=33.1

Q ss_pred             HHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 008182          456 GAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVA  502 (575)
Q Consensus       456 g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~  502 (575)
                      |+-.+..+...+--+.+..+++.|-.+|+...+.-++|-.+.+.++-
T Consensus       353 GLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  353 GLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             hhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            44344444445555666778889999999998888888877766654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=81.99  E-value=29  Score=34.23  Aligned_cols=57  Identities=11%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             hhhhhhhhhhhHHHhHHHHHHH--Hh-hhcc--cccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          179 MAYFFSRFFFFISLGTLMAVTV--LV-YIQD--EISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       179 r~~~~~~~~~~~~ig~~l~~~i--~~-~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      |+.......++.++|.+++...  .+ -..+  .-.|++++.+.+++.++-++++.+.-++.
T Consensus         4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~f   65 (267)
T PF07672_consen    4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKNF   65 (267)
T ss_pred             cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6677777777888888877332  22 1111  12499999888888877777777766654

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=80.50  E-value=26  Score=36.18  Aligned_cols=95  Identities=11%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             ceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCc
Q 008182          443 VSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNIN  522 (575)
Q Consensus       443 ~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~  522 (575)
                      -++++..+.++++..-..+.-+....-+++....+.-|...|++++..-+=..+-.++   +.+..+       +.-.+.
T Consensus       324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g-------~~L~ir  393 (433)
T KOG3810|consen  324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRG-------LGLDIR  393 (433)
T ss_pred             cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccc-------cCCCcc
Confidence            4677788899999888888887777777777778888888998886644333332222   222111       111111


Q ss_pred             cc--chhHHHHHHHHHHHHHHHHHHhh
Q 008182          523 RG--RLDLFYGLLAILSIINLVIYLIC  547 (575)
Q Consensus       523 ~~--~~~~~f~~~a~l~~v~~~~~~~~  547 (575)
                      .+  -+..+|.+++++.++.....+..
T Consensus       394 ~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  394 TQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             eeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            11  13344677777777766554333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	575
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		4e-19
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 116/482 (24%), Positives = 199/482 (41%), Gaps = 61/482 (12%)
Query: 14  SPADPSKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTM------HLPSATSANIV 67
           SP D  K    +P   ++  E CER S  G+   L  +L+  +       L  A + ++ 
Sbjct: 3   SPVDAPKWPRQIP--YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60
Query: 68  TDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETA 127
             F+   +   LLGG++AD F G+Y TI   + +  +G   LA+                
Sbjct: 61  HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------------- 106
Query: 128 THTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXX 187
            H+ +   GF     Y  L+LIALG+GG+K  VS F  DQFD+ + K   Q A+      
Sbjct: 107 -HSVQ---GF-----YTGLFLIALGSGGIKPLVSSFMGDQFDQSN-KSLAQKAF--DMFY 154
Query: 188 XXISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRY-KKSSGSPIV 246
             I+ G+  A   +  +      +V +GI  V MF+A + F  G KRY +       P  
Sbjct: 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDP-- 212
Query: 247 HIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAA------IVAEGDF 300
           H F  ++ +    K++   N+G++       S  +       L   A      ++  G  
Sbjct: 213 HGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFV 272
Query: 301 EAGST---PNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERS 357
            AG++       K     +V+ V+ V R+L ++A    FW+ + Q  +  + QA  M + 
Sbjct: 273 GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP 332
Query: 358 IGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGM 417
                        +F  A++  L   + L++ L   +     +  ++RM + L       
Sbjct: 333 ------------QWFEPAMMQAL---NPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMG 377
Query: 418 AAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKG 477
           A  A+     + V     +      +S+F  I  + L+  GE  +    L+F  +++PK 
Sbjct: 378 AGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437
Query: 478 MK 479
           MK
Sbjct: 438 MK 439

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 159/410 (38%), Gaps = 97/410 (23%)
Query: 34  ELCERLSTMGIAVNLVTYL-----VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF 88
           E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  +    +L   +GGF+AD  
Sbjct: 22  EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 89  LGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYL 148
           +G        A       G+L M+  +    P                F    L+ ++ L
Sbjct: 82  IG--------ARPAVFWGGVLIMLGHIVLALP----------------FGASALFGSIIL 117
Query: 149 IALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYXXXXXXXXISLGTLMAVTVLVYIQDEI 208
           I +GTG LK +VS      +DE D +     +         I+LG  +A  ++   Q+  
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFS----IFVFGINLGAFIAPLIVGAAQEAA 173
Query: 209 SRSVGYGICSVAMFMAIIIFLAGTKR-----YRYKKSSGSP-------------IVHIFQ 250
              V + + ++ MF+ ++++  G K+     Y       +P             +     
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIA 233
Query: 251 VIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWK 310
           +IV         LP  + +L   T  A  I     F+F                    W 
Sbjct: 234 IIVVMNLVGWNSLPAYINLL---TIVAIAI---PVFYF-------------------AWM 268
Query: 311 LCS--VTSVEEVKMVARLLPIWATTIIFWTTYAQ----MITFSVEQATTMERSIGRFQIP 364
           + S  VTS E +++V+  +P++   ++FW    Q    + TF+ E+  +    +  FQ  
Sbjct: 269 ISSVKVTSTEHLRVVSY-IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQ-- 325
Query: 365 AGSLTVFFVSAILITLAVYDRLIMPLWKKW-KGKPGFTNLQRMAIGLVLS 413
             SL   F+        +Y      LW  W K +P  ++  + A+GL+ +
Sbjct: 326 --SLNPLFI-------MLYTPFFAWLWTAWKKNQP--SSPTKFAVGLMFA 364

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	575
2xut_A	524	Proton/peptide symporter family protein; transport	1e-149
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	4e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  439 bits (1131), Expect = e-149
 Identities = 115/556 (20%), Positives = 218/556 (39%), Gaps = 65/556 (11%)

Query: 18  PSKTGGWVPAAL--VLGIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTD 69
           P     W P  +  ++  E CER S  G+   L  +L+  +       L  A + ++   
Sbjct: 4   PVDAPKW-PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHS 62

Query: 70  FMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATH 129
           F+   +   LLGG++AD F G+Y TI   + +  +G   LA+                  
Sbjct: 63  FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI------------------ 104

Query: 130 TCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFF 189
                    +   Y  L+LIALG+GG+K  VS F  DQFD+ ++    +    F  F+F 
Sbjct: 105 -----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQK---AFDMFYFT 156

Query: 190 ISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIF 249
           I+ G+  A   +  +      +V +GI  V MF+A + F  G KRY +            
Sbjct: 157 INFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216

Query: 250 QVIVAAIKKRKMDLPCNVGMLYEDTPEAS------RIHHTEQFHFLDKAAIVAEGDFEAG 303
            VI +A+  +      N+G++       S       I        L  A ++  G   AG
Sbjct: 217 PVIRSALLTKVE-GKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAG 275

Query: 304 ST---PNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGR 360
           ++       K     +V+ V+ V R+L ++A    FW+ + Q  +  + QA  M   +  
Sbjct: 276 ASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDM---VKP 332

Query: 361 FQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAA 420
                  +       +++ +   + ++ P  ++   K   T L++M  G+ ++ +     
Sbjct: 333 QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL--TALRKMGAGIAITGLSWIVV 390

Query: 421 ALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKT 480
             ++                  +S+F  I  + L+  GE  +    L+F  +++PK MK 
Sbjct: 391 GTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440

Query: 481 MSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIIN 540
                +  ++++G          VK  T        +   ++     +F+   A  +I+ 
Sbjct: 441 TIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMFF--FAGFAILA 495

Query: 541 LVIYLICAVWYKPKKP 556
            +++ + A  Y+ +  
Sbjct: 496 AIVFALYARSYQMQDH 511

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score =  119 bits (301), Expect = 4e-29
 Identities = 97/535 (18%), Positives = 193/535 (36%), Gaps = 84/535 (15%)

Query: 28  ALVLGIELCERLSTMGIAVNLVTYLV-----GTMHLPSATSANIVTDFMGTSFLLCLLGG 82
           + +   E+ ER S  G+   L+ Y+      G +H+  AT+A+I+  +    +L   +GG
Sbjct: 16  STLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGG 75

Query: 83  FLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVL 142
           F+AD  +G    +     +  LG  +LA+                              L
Sbjct: 76  FVADRIIGARPAVFWGGVLIMLGHIVLALPF------------------------GASAL 111

Query: 143 YIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLV 202
           + ++ LI +GTG LK +VS      +DE D +        FS F F I+LG  +A  ++ 
Sbjct: 112 FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAG----FSIFVFGINLGAFIAPLIVG 167

Query: 203 YIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMD 262
             Q+     V + + ++ MF+ ++++  G K+               + +   + K  + 
Sbjct: 168 AAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLA 227

Query: 263 LPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCS--VTSVEEV 320
           +   + ++       + +       +++   IVA            W + S  VTS E +
Sbjct: 228 VAGFIAIIV----VMNLVGWNSLPAYINLLTIVAIAIPVFYFA---WMISSVKVTSTEHL 280

Query: 321 KMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAG---SLTVFFVSAIL 377
           ++V+  +P++   ++FW    Q        A      +     P     SL   F+    
Sbjct: 281 RVVS-YIPLFIAAVLFWAIEEQGSVVLATFA---AERVDSSWFPVSWFQSLNPLFI---- 332

Query: 378 ITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLT 437
           +           LW  WK     ++  + A+GL+        + L+      +A    L 
Sbjct: 333 MLYTP---FFAWLWTAWKKN-QPSSPTKFAVGLMF----AGLSFLL------MAIPGALY 378

Query: 438 TATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVS 497
             +  VS   L+  + LV  GE  I    L      +PK   +    ++  + S+G  + 
Sbjct: 379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL- 437

Query: 498 SFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYK 552
                              L    N      ++    + S++  ++ +  +   +
Sbjct: 438 ----------------NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 9e-07
 Identities = 63/446 (14%), Positives = 124/446 (27%), Gaps = 117/446 (26%)

Query: 30  VLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFL 89
           +L  E  + +     AV+    L  T+    +    +V  F+    +L +   FL     
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTL---LSKQEEMVQKFVEE--VLRINYKFLMSPIK 99

Query: 90  GRYK-----TIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYI 144
              +     T         L      +  K    R +P  +      E           +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPA-----KNV 153

Query: 145 ALYLIALGTGGL-KSSVSGFGTDQFDE--KDEKEKTQMAYFFSRFF--FFISLGTLMAVT 199
            +     G  G  K+ V+        +     K + +M       F  F+++L    +  
Sbjct: 154 LID----GVLGSGKTWVAL-------DVCLSYKVQCKM------DFKIFWLNLKNCNSPE 196

Query: 200 VLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYR---------YKKSSGSPIV--HI 248
            ++ +  ++   +     S +   + I     + +           Y+      +V  ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLLNV 253

Query: 249 F--QVIVAAIKKRKMDLPCNVGMLYED-----------TPEASRIHHTEQFH------FL 289
              +           +L C + +               T   S  HH+           L
Sbjct: 254 QNAKAW------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 290 DKAAIVAEGDF--EAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTY-----AQ 342
            K       D   E  +T NP +L          ++A  +     T   W          
Sbjct: 308 LKYLDCRPQDLPREVLTT-NPRRLS---------IIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 343 MITFSVEQATTME-RSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFT 401
           +I  S+      E R    F      L+VF  SA  I   +   +       W      +
Sbjct: 358 IIESSLNVLEPAEYRK--MFD----RLSVFPPSA-HIPTILLSLI-------WFDVI-KS 402

Query: 402 NLQRMAIGLVLSIVGMAAAALVERKR 427
           ++  +   L          +LVE++ 
Sbjct: 403 DVMVVVNKLHKY-------SLVEKQP 421

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 59/462 (12%), Positives = 117/462 (25%), Gaps = 139/462 (30%)

Query: 163 FGTDQFD----EKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS 218
              ++ D     KD    T           F +L +     V  ++++ +  +  Y    
Sbjct: 46  LSKEEIDHIIMSKDAVSGT--------LRLFWTLLSKQEEMVQKFVEEVLRIN--YK--- 92

Query: 219 VAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEAS 278
                    FL    +   ++ S    ++I Q           D   N   ++      S
Sbjct: 93  ---------FLMSPIKTEQRQPSMMTRMYIEQR----------DRLYNDNQVFAKYN-VS 132

Query: 279 RIHHTEQFHFLDKAA--------IVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLP-- 328
           R+   + +  L +A         ++ +G   +G      K      V     V   +   
Sbjct: 133 RL---QPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKMDFK 183

Query: 329 -IWAT----------TIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVS--- 374
             W              +      Q+      ++        R       L     S   
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 375 --AILITLAVYDRLIMPLWKKWKGKPGFTNLQ-RMAIGLVLS-----------------I 414
              +L+ L V +      W        F NL  ++   L+ +                  
Sbjct: 244 ENCLLVLLNVQNAKA---WNA------F-NLSCKI---LLTTRFKQVTDFLSAATTTHIS 290

Query: 415 VGMAAAALVERKRLSV-ARAVGLTTATLPVSVFLLIPQFFLVGAGEAFI-YTGQLDFFIT 472
           +   +  L   +  S+  + +      LP  V    P   L    E+        D +  
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNW-- 347

Query: 473 KSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGL 532
           K     K  +             + S L                L     R      +  
Sbjct: 348 KHVNCDKLTTI------------IESSLNV--------------LEPAEYRKM----FDR 377

Query: 533 LAILSI-INLVIYLICAVWYKPKKPKAGIQMETYVKGSSAEE 573
           L++     ++   L+  +W+   K    + +    K S  E+
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	575
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.88
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.39
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.3
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.29
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.2
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.98
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.87
2xut_A	524	Proton/peptide symporter family protein; transport	98.18

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=3.3e-31  Score=285.97  Aligned_cols=446  Identities=20%  Similarity=0.256  Sum_probs=302.0

Q ss_pred             CCCCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhc-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc-ccchH
Q 008182           19 SKTGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGT-----MHLPSATSANIVTDFMGTSFLLCLLGGFLADT-FLGRY   92 (575)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Gr~   92 (575)
                      ..++++|.++.+++..+++.+++|++.+.++.|+.++     +|++..+.+++.+.+.++..++++++|+++|| + |||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r   85 (491)
T 4aps_A            7 TFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GAR   85 (491)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHH
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence            3456788899999999999999999999999999988     99999999999999999999999999999999 8 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCC
Q 008182           93 KTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKD  172 (575)
Q Consensus        93 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~  172 (575)
                      +++.++.++.+++.+++++++                        +...++++|++.|+|.+...+...++++|++|+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  141 (491)
T 4aps_A           86 PAVFWGGVLIMLGHIVLALPF------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD  141 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhh------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc
Confidence            999999999999999888763                        36678999999999999999999999999999887


Q ss_pred             hHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCcccccc---CCCC-CchhHH
Q 008182          173 EKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYK---KSSG-SPIVHI  248 (575)
Q Consensus       173 ~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~  248 (575)
                      ++    |+.++++++.+.++|..++|.+++++.+..+|+++|++.++..+++++..++..++...+   ++++ ....+.
T Consensus       142 ~~----r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (491)
T 4aps_A          142 RR----RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV  217 (491)
T ss_dssp             TH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred             cc----ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence            44    778888899999999999999999999989999999998877777666655443332211   1111 111111


Q ss_pred             HHHHHH--------------HHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccc
Q 008182          249 FQVIVA--------------AIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSV  314 (575)
Q Consensus       249 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (575)
                      .+....              .....+.                   +..+.................    ...|+. ..
T Consensus       218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~  273 (491)
T 4aps_A          218 KPLLVKVSLAVAGFIAIIVVMNLVGWN-------------------SLPAYINLLTIVAIAIPVFYF----AWMISS-VK  273 (491)
T ss_dssp             HHHHHHCCCCCHHHHHHHHHHHHHSSC-------------------CTTHHHHHHHHHHHHHHHHHH----HHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCc-------------------ccccchhhhhHHHHHHHHHHH----HHHhhc-cc
Confidence            110000              0000000                   000000000000000000000    000000 00


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhc-ccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhh
Q 008182          315 TSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQAT-TMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKK  393 (575)
Q Consensus       315 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r  393 (575)
                      ....++++.......++....++..+.+....+..+.. ..+.+    ....+.+.....+..++..++.+++.+++.||
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r  349 (491)
T 4aps_A          274 VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN  349 (491)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc
Confidence            01122333444455556666667766666554332221 12222    13456677788888888888888887766655


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheeccc
Q 008182          394 WKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK  473 (575)
Q Consensus       394 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~  473 (575)
                           .......+..+.++.+++++++.......          +.+...+.+++++.+++.+++++...|..+.++.+.
T Consensus       350 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  414 (491)
T 4aps_A          350 -----QPSSPTKFAVGLMFAGLSFLLMAIPGALY----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL  414 (491)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTTHHHHHHC----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             -----CCCchHHHHHHHHHHHHHHHHHHHHHHhc----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence                 24456667788888888888777653210          011134666778889999999999999999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 008182          474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWYKP  553 (575)
Q Consensus       474 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~  553 (575)
                      +|++.||+++|++++...+|..+++.+.+.+.+.                 +....|++.++++++..++.+++.++.++
T Consensus       415 ~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (491)
T 4aps_A          415 APKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG  477 (491)
T ss_dssp             TTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998876431                 12455777788887777777666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=4.7e-31  Score=287.25  Aligned_cols=483  Identities=21%  Similarity=0.354  Sum_probs=293.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCC------CCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMH------LPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKT   94 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~   94 (575)
                      +.++|.++.+++..++..+++|++...++.|+.+++|      ++..+.+++.+++.++..++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3456788889999999999999999999999999999      9999999999999999999999999999996699999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChH
Q 008182           95 IAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEK  174 (575)
Q Consensus        95 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~  174 (575)
                      +.++.++..++.++++++.                       .+...++++|++.|++.+...+...++++|++|+++  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--  142 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE-----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN--  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred             HHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence            9999999999998888763                       036778899999999999999999999999999988  


Q ss_pred             hhhhhhhh---hhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHH
Q 008182          175 EKTQMAYF---FSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQV  251 (575)
Q Consensus       175 ~~~~r~~~---~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (575)
                          |++.   +++.+.+.++|..++|.+++++.+..+|+++|++.++..+++.+..++..++.+++++++++..+..+.
T Consensus       143 ----r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (524)
T 2xut_A          143 ----KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPV  218 (524)
T ss_dssp             ----TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC------------
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHH
Confidence                7544   455888999999999999999998889999999988877776666655444433222222221111111


Q ss_pred             HHHHHHhccccCCCCccccccCCccc---ccccCCcchhhhhHHhhhhcCCcCCCCCCCCC-------ccccchhhhhHH
Q 008182          252 IVAAIKKRKMDLPCNVGMLYEDTPEA---SRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPW-------KLCSVTSVEEVK  321 (575)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  321 (575)
                      .....+++....+ ......+.....   ......+................+ .....+|       +.++..+.++++
T Consensus       219 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (524)
T 2xut_A          219 IRSALLTKVEGKG-NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMG-FVGAGASLQLERARKSHPDAAVDGVR  296 (524)
T ss_dssp             --------CTTHH-HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHH-HHHTGGGTHHHHSCCSCCSSSSTTTT
T ss_pred             HHHHHhhhhcccC-ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccchhhHHhhhhccccHhHHHHHH
Confidence            1111111100000 000000000000   000000000000000000000000 0000111       000111223334


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCC
Q 008182          322 MVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFT  401 (575)
Q Consensus       322 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~  401 (575)
                      +.+.....+.....++..+.+..+.+..+....+.+.  + .+.+.+...+.+..++..++.+++..+..+|+.+  +.+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  371 (524)
T 2xut_A          297 SVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV--KLT  371 (524)
T ss_dssp             THHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC--------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC--CCC
Confidence            4444455555556666666666655554433333221  1 2345566667777777888887775555455432  245


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHH
Q 008182          402 NLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTM  481 (575)
Q Consensus       402 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~  481 (575)
                      ..+.+.+|.++.+++++.++......          +.+...+.+++++.+++.++++++..|..++++.+.+|++.||+
T Consensus       372 ~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~  441 (524)
T 2xut_A          372 ALRKMGAGIAITGLSWIVVGTIQLMM----------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT  441 (524)
T ss_dssp             CHHHHHTHHHHHHHHHHTTTTTTTTT----------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence            56667788888888877665432100          00112456677888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccC-CCcccchhHHHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 008182          482 STGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLAD-NINRGRLDLFYGLLAILSIINLVIYLICAVWYKPKK  555 (575)
Q Consensus       482 ~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~~~~~  555 (575)
                      ++|++++...+|+.+++.+.+.+.+..+    .+|.++ ..+.  ....|++.+++.+++.++++++.+++++++
T Consensus       442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (524)
T 2xut_A          442 IMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQD  510 (524)
T ss_dssp             THHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999999998754211    123211 0111  123377788888888877777766655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=2.5e-27  Score=251.99  Aligned_cols=401  Identities=7%  Similarity=-0.045  Sum_probs=254.1

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      ++.++..++..++..+..+.+...++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence            3455566666666666666666666555 4567 9999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHH----HhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhh
Q 008182          104 LGTGMLAM----VTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQM  179 (575)
Q Consensus       104 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r  179 (575)
                      ++.+++++    +.                        +...++++|++.|++.+...+...++++|++|+++      |
T Consensus       104 ~~~~~~~~~~~~~~------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r  153 (451)
T 1pw4_A          104 AVMLFMGFVPWATS------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------R  153 (451)
T ss_dssp             HHHHHHHHCHHHHS------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------H
T ss_pred             HHHHHHHhhhhccc------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------h
Confidence            99999988    52                        36678999999999999999999999999999888      9


Q ss_pred             hhhhhhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHh
Q 008182          180 AYFFSRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKK  258 (575)
Q Consensus       180 ~~~~~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (575)
                      ++++++.+.+.++|..++|.+++++.+..+ |+++|++.++..++..++.++..++.+++...++..+            
T Consensus       154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  221 (451)
T 1pw4_A          154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE------------  221 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhh------------
Confidence            999999999999999999999999888888 9999999887776655554443332221111000000            


Q ss_pred             ccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhh-hhHHHHHHHHHHHHHHHHHH
Q 008182          259 RKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSV-EEVKMVARLLPIWATTIIFW  337 (575)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  337 (575)
                             ..     .+.+++ .+..+                   +...+++....... ++++.....+..+.....+.
T Consensus       222 -------~~-----~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
T 1pw4_A          222 -------YK-----NDYPDD-YNEKA-------------------EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY  269 (451)
T ss_dssp             -------TC-----CC---------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             -------hc-----cccccc-chhhh-------------------hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                   00     000000 00000                   00000000000000 11111111111112222211


Q ss_pred             HhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHH-HH
Q 008182          338 TTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSI-VG  416 (575)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~-~~  416 (575)
                      ..... ...+..+.  .+.+    ....+.+.....+..++..++.+++.+++.+        ++.+.+..+..+.. ++
T Consensus       270 ~~~~~-~~~~~~~~--~g~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~--------~~~~~~~~~~~~~~~~~  334 (451)
T 1pw4_A          270 GILDW-SPTYLKEV--KHFA----LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR--------GNRGATGVFFMTLVTIA  334 (451)
T ss_dssp             HHHHH-HHHHBTTB--SCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTST--------TCHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHh--cCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHH
Confidence            11111 11111110  1111    1112334455555566666666666544310        11222444444444 44


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHH-HHH
Q 008182          417 MAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSL-GFF  495 (575)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l-g~~  495 (575)
                      ++.+.+..                 ..+.+.++...++.|++.....+..+.++.+.+|++.||+++|+++....+ |..
T Consensus       335 ~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~  397 (451)
T 1pw4_A          335 TIVYWMNP-----------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  397 (451)
T ss_dssp             HHHTTSCC-----------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc-----------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence            44443210                 124445566777888888888888889999999999999999999999999 999


Q ss_pred             HHHHHHHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 008182          496 VSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAV  549 (575)
Q Consensus       496 lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~  549 (575)
                      +++.+.+.+.+..+                ....|++.+++.+++.+..+...+
T Consensus       398 ~~~~~~g~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          398 AASAIVGYTVDFFG----------------WDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHSSC----------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC----------------cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998865321                356677778877777776655544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=6.5e-25  Score=232.62  Aligned_cols=360  Identities=13%  Similarity=0.114  Sum_probs=234.4

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 008182           21 TGGWVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAA  100 (575)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~  100 (575)
                      +++++.+..+++..++..+..+...+.+ +++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            3345556666666666666665554444 457778999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +.+++.+++......+                     +.+.++++|++.|++.+...+...++++|++|+++      |+
T Consensus       100 ~~~~~~~~~~~~~~~~---------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~  152 (438)
T 3o7q_A          100 LYALGAALFWPAAEIM---------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GH  152 (438)
T ss_dssp             HHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HH
T ss_pred             HHHHHHHHHHhccccc---------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HH
Confidence            9999998883321112                     37789999999999999999999999999999999      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhc-cccc-------------------------chhHHHHHHHHHHHHHHHHHhcC-c
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQ-DEIS-------------------------RSVGYGICSVAMFMAIIIFLAGT-K  233 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~  233 (575)
                      +.+++.+.+.++|..++|.+++++. +..+                         |+++|++.++..++..+..++.+ |
T Consensus       153 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p  232 (438)
T 3o7q_A          153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP  232 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999987 5554                         89999877666555544443322 2


Q ss_pred             cccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCcccc
Q 008182          234 RYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCS  313 (575)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (575)
                      +.+++++++++.                                    .....++   ..+                   
T Consensus       233 ~~~~~~~~~~~~------------------------------------~~~~~~~---~~~-------------------  254 (438)
T 3o7q_A          233 ALQSDNHSDAKQ------------------------------------GSFSASL---SRL-------------------  254 (438)
T ss_dssp             CCTTTCCCCSST------------------------------------TSHHHHH---HHH-------------------
T ss_pred             cccccccccccc------------------------------------cchhhhH---HHH-------------------
Confidence            111100000000                                    0000000   000                   


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhh
Q 008182          314 VTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKK  393 (575)
Q Consensus       314 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r  393 (575)
                         .++++.....+..+.............+..+..+..+.+.      ...+.+..+..+...+..++.+++.+|+.+|
T Consensus       255 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  325 (438)
T 3o7q_A          255 ---ARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA------GFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_dssp             ---TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             ---HhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence               0011111111111122222222212211110211111111      1123344445555556666666665544333


Q ss_pred             ccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheeccc
Q 008182          394 WKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITK  473 (575)
Q Consensus       394 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~  473 (575)
                                +.+..+.++.+++++.+.+.                    +..+.+...++.+++.+...|..+++..+.
T Consensus       326 ----------~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  375 (438)
T 3o7q_A          326 ----------KVLAAYALIAMALCLISAFA--------------------GGHVGLIALTLCSAFMSIQYPTIFSLGIKN  375 (438)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHC--------------------CHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHc--------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                      33566666666666555432                    111334456788888888999999998999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          474 SPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVT  508 (575)
Q Consensus       474 ~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~  508 (575)
                      .|++ +++++++.. ...+|..+++.+.+.+.+..
T Consensus       376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~  408 (438)
T 3o7q_A          376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_dssp             CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred             cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9977 999999887 66799999999999887654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.92  E-value=3.7e-24  Score=230.56  Aligned_cols=413  Identities=12%  Similarity=0.006  Sum_probs=227.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhh
Q 008182           60 SATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQM  139 (575)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (575)
                      +.+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++++........      ....-...-..+.
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~------~~~~~~~~~a~~~  126 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSIN------PDNTVPVYLAGYV  126 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS------SSSSCCGGGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc------chhHHHHHHhhhH
Confidence            45678999999999999999999999999 9999999999999999999986421100000      0000000012357


Q ss_pred             HHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhhhhHHHhHHHHHHHHhhhccc--------ccch
Q 008182          140 GVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFFFFISLGTLMAVTVLVYIQDE--------ISRS  211 (575)
Q Consensus       140 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~l~~~i~~~l~~~--------~~~~  211 (575)
                      ..++++|+++|+|.|...+..+.+++|..|++.      |++..++.+.+..+|..+++.++..+...        ..|+
T Consensus       127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4gc0_A          127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR  200 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence            889999999999999999999999999999998      99999999999999999998877666432        2466


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCccccccCCcccccccCCcchhhhhH
Q 008182          212 VGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNVGMLYEDTPEASRIHHTEQFHFLDK  291 (575)
Q Consensus       212 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  291 (575)
                      ..+.+..+..++.++..... |+.++.-..+...++..+.......+...                 ..+..+.....+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~-peSp~~L~~~~~~~~a~~~l~~~~~~~~~-----------------~~~~~~~~~~~~~  262 (491)
T 4gc0_A          201 YMFASECIPALLFLMLLYTV-PESPRWLMSRGKQEQAEGILRKIMGNTLA-----------------TQAVQEIKHSLDH  262 (491)
T ss_dssp             HHHHTTHHHHHHHHHHGGGS-CCCHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhhhhhhhhhcC-CCChHHHHHcCchhHHHHhHHHhcCCchh-----------------HHHHHHHHHHHHh
Confidence            66655554444333333222 22111000011111111111110000000                 0000000000000


Q ss_pred             HhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcccchhh-hhhccccccccccccccccccc
Q 008182          292 AAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQMITFSV-EQATTMERSIGRFQIPAGSLTV  370 (575)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  370 (575)
                      ..  +..              ........++..........  ..+...... ..+. .........    .........
T Consensus       263 ~~--~~~--------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~  319 (491)
T 4gc0_A          263 GR--KTG--------------GRLLMFGVGVIVIGVMLSIF--QQFVGINVV-LYYAPEVFKTLGAS----TDIALLQTI  319 (491)
T ss_dssp             HH--HHT--------------THHHHSCCTHHHHHHHHHHH--HHHTCHHHH-HHHHHHHHHHSSCC----HHHHHHHHH
T ss_pred             hh--hhh--------------hHHHHhcccHHHHHHHHHHH--HHHhhhhHH-HhcchHHHHhcCCC----ccchhhHHH
Confidence            00  000              00000001111111111000  000000000 0111 000011100    111112233


Q ss_pred             chhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCccceehhhHH
Q 008182          371 FFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSVFLLIP  450 (575)
Q Consensus       371 ~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~  450 (575)
                      +..+..++...+...+.+|+.||          +.+..+....+++++.++.....               ..+....+.
T Consensus       320 ~~~~~~~~~~~~~~~l~dr~Grr----------~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~  374 (491)
T 4gc0_A          320 IVGVINLTFTVLAIMTVDKFGRK----------PLQIIGALGMAIGMFSLGTAFYT---------------QAPGIVALL  374 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHHHHHHHHHHHT---------------TCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCc----------chhccchHHHHHHHHHHHHHHhc---------------ccchHHHHH
Confidence            33444445555555555555544          23566777777777666544221               111122222


Q ss_pred             HHHHHHHHHH-HhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCcccchhHH
Q 008182          451 QFFLVGAGEA-FIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNINRGRLDLF  529 (575)
Q Consensus       451 ~~~l~g~g~~-~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~  529 (575)
                      ..++...+.. ...|..+.+..|.+|++.|++++|+.+..+.+++++++.+.+.+.+...       ..   ...+....
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~-------~~---~~~~~~~~  444 (491)
T 4gc0_A          375 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSW-------LV---AHFHNGFS  444 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHH-------HH---HHHTTCHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---hhhhhhHH
Confidence            2333333322 3346778899999999999999999999999999999988876543211       00   00112345


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCccccc
Q 008182          530 YGLLAILSIINLVIYLICAVWYKPKKPKAGIQ  561 (575)
Q Consensus       530 f~~~a~l~~v~~~~~~~~~~~~~~~~~~~~~~  561 (575)
                      |++.+++++++.++.+++.+|+|+++.|+.++
T Consensus       445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~  476 (491)
T 4gc0_A          445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEA  476 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHheecCCCCCCHHHHHH
Confidence            78889999999999999999999998776443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.91  E-value=7.9e-24  Score=219.95  Aligned_cols=347  Identities=12%  Similarity=0.035  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
Q 008182           28 ALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTG  107 (575)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~  107 (575)
                      +.+++..++..+......+.++.+ .+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            445566677777776666666664 568999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhhh
Q 008182          108 MLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRFF  187 (575)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  187 (575)
                      +++++++                        ...+++.|++.|++.+...+...+++.|.+|+++      |++.+++.+
T Consensus        81 ~~~~~~~------------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  130 (375)
T 2gfp_A           81 VAVTTSS------------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLN  130 (375)
T ss_dssp             HHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHH
T ss_pred             HHHHhcc------------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHH
Confidence            9888733                        6778999999999999999999999999999888      999999999


Q ss_pred             hhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccCCCCc
Q 008182          188 FFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDLPCNV  267 (575)
Q Consensus       188 ~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (575)
                      ...++|..++|.+++++.+..+|++.|++.++..++..+...+..|+.++++++++                        
T Consensus       131 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  186 (375)
T 2gfp_A          131 MGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT------------------------  186 (375)
T ss_dssp             HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc------------------------
Confidence            99999999999999999998899999998777655544432222221111000000                        


Q ss_pred             cccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHH-HHHHHHHHHHHHhhhcccch
Q 008182          268 GMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARL-LPIWATTIIFWTTYAQMITF  346 (575)
Q Consensus       268 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~  346 (575)
                                                          +...++     ++..+.+.+... +..+.............+ .
T Consensus       187 ------------------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  224 (375)
T 2gfp_A          187 ------------------------------------RLLTSY-----KTLFGNSGFNCYLLMLIGGLAGIAAFEACSG-V  224 (375)
T ss_dssp             ------------------------------------CTTTCS-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-C
T ss_pred             ------------------------------------cHHHHH-----HHHhcCcchHHHHHHHHHHHHHHHHHHHHHH-H
Confidence                                                000001     011112222222 112222222222211111 1


Q ss_pred             hhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHH-HHHHHHHHHHHHH
Q 008182          347 SVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVL-SIVGMAAAALVER  425 (575)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~  425 (575)
                      +..+..+.+.      ...+.+.....+..++..++.+++    .+|.+      +  ++..+..+ ...+.........
T Consensus       225 ~~~~~~g~~~------~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~------~--~~~~~~~~~~~~~~~~~~~~~~  286 (375)
T 2gfp_A          225 LMGAVLGLSS------MTVSILFILPIPAAFFGAWFAGRP----NKRFS------T--LMWQSVICCLLAGLLMWIPDWF  286 (375)
T ss_dssp             SSHHHHHHHH------HHHHHHHHTHHHHHHHHHHHHHTT----TTHHH------H--HHHHHHHHHHHTSSSSSHHHHH
T ss_pred             HHHHHhCCCH------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHH------H--HHHHHHHHHHHHHHHHHHHhhh
Confidence            1111111111      112233344444444444444433    44421      1  23444433 2222222111110


Q ss_pred             HHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008182          426 KRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLFLTTLSLGFFVSSFLVAVVK  505 (575)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~v~  505 (575)
                      .               ..+.+.++...++.+++.+...|....+..+..| +.||+++|+.+..+.+|..+++.+.+.+.
T Consensus       287 ~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          287 G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0               1133345567788899999999999999999998 89999999999999999999999988765


Q ss_pred             h
Q 008182          506 K  506 (575)
Q Consensus       506 ~  506 (575)
                      +
T Consensus       351 ~  351 (375)
T 2gfp_A          351 Q  351 (375)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.88  E-value=7.4e-23  Score=216.47  Aligned_cols=392  Identities=10%  Similarity=0.026  Sum_probs=222.2

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.+....++..+++..+.++++.|+++++|++..+.+++.+.+.++..++++++|+++||+ ||||+++++..+.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            4566666666777777777788999999999999999999999999999999999999999999 999999998877655


Q ss_pred             HHHHH---HHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          105 GTGML---AMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       105 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      +....   .++...                       ...+..++.+.+++.+...+...+...+..++..+    .++.
T Consensus        86 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~  138 (417)
T 2cfq_A           86 MFAPFFIFIFGPLL-----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNF  138 (417)
T ss_dssp             CHHHHHHHTHHHHH-----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTC
T ss_pred             HHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hccc
Confidence            32211   222100                       00123344455555554444444444444332221    1677


Q ss_pred             hhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccc
Q 008182          182 FFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKM  261 (575)
Q Consensus       182 ~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (575)
                      .++......++|..++|.+++++.+ .+|+..|++.++..++..+..++..++    +++..+.                
T Consensus       139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~~----------------  197 (417)
T 2cfq_A          139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSATV----------------  197 (417)
T ss_dssp             CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSCS----------------
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----ccccccc----------------
Confidence            7778778889999999999999877 589999987665533333322221111    1000000                


Q ss_pred             cCCCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 008182          262 DLPCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYA  341 (575)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (575)
                        ++..         +.   ..+..+.-+...                      ..++++ +.............+..+.
T Consensus       198 --~~~~---------~~---~~~~~~~~~~~~----------------------~~~~~~-~~~~~~~~~~~~~~~~~~~  240 (417)
T 2cfq_A          198 --ANAV---------GA---NHSAFSLKLALE----------------------LFRQPK-LWFLSLYVIGVSCTYDVFD  240 (417)
T ss_dssp             --SSSS---------SS---CCCCCCHHHHHH----------------------HTTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             --cccc---------cc---ccccccHHHHHH----------------------HhcCCc-hhhHHHHHHHHHHHHHHHH
Confidence              0000         00   000000000000                      001111 1111111111111222222


Q ss_pred             cccchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHH
Q 008182          342 QMITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAA  421 (575)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~  421 (575)
                      +....+..+  .......+ ....+....++.+...+...+.+++.+|+.+|          +.+..+.++.+++++.++
T Consensus       241 ~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~----------~~l~~~~~~~~~~~~~~~  307 (417)
T 2cfq_A          241 QQFANFFTS--FFATGEQG-TRVFGYVTTMGELLNASIMFFAPLIINRIGGK----------NALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHH--TSSSHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH--HHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH----------HHHHHHHHHHHHHHHHHH
Confidence            221111111  11100000 00112233444445555556666665555443          235556666666554443


Q ss_pred             HHHHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH-HHHHHHHHHHHHHHH
Q 008182          422 LVERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL-FLTTLSLGFFVSSFL  500 (575)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~~lg~~l  500 (575)
                      +.                   .+.+.+++..++.+++.....+..+.++.+..|++.||++.++ ++..+++|+.+++.+
T Consensus       308 ~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l  368 (417)
T 2cfq_A          308 FA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             TC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred             Hh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence            21                   1233444555566777667777788899999999999999998 588889999999999


Q ss_pred             HHhhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhh
Q 008182          501 VAVVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVW  550 (575)
Q Consensus       501 ~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~  550 (575)
                      .|.+.+..                +....|.+.+++.+++.++.+...++
T Consensus       369 ~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~  402 (417)
T 2cfq_A          369 AGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            99776421                13456777777777777666554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.39  E-value=1.4e-12  Score=137.92  Aligned_cols=179  Identities=17%  Similarity=0.088  Sum_probs=150.0

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTF-LGRYKTIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~-~Gr~~~~~~~~~~~~  103 (575)
                      |.++.+++..++..+.++++..+++.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++..+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            5677888888888899999999999999998999999999999999999999999999999994 288888887776665


Q ss_pred             -HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhh
Q 008182          104 -LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYF  182 (575)
Q Consensus       104 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  182 (575)
                       ++.+++.+.   +.                   .+...+.+..++.|++.+...+....++.|.+|++.      |+++
T Consensus       332 ~~~~~~~~~~---~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  383 (451)
T 1pw4_A          332 TIATIVYWMN---PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA  383 (451)
T ss_dssp             HHHHHHTTSC---CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred             HHHHHHHHHh---cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence             555544432   10                   135556677778888888888888899999999988      9999


Q ss_pred             hhhhhhhHHH-hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhc
Q 008182          183 FSRFFFFISL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAG  231 (575)
Q Consensus       183 ~~~~~~~~~i-g~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  231 (575)
                      +++.+...++ |..++|.+.|++.+..||+..|++.++..+++.++.++.
T Consensus       384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999 999999999999999999999998888777766665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.30  E-value=3e-11  Score=127.23  Aligned_cols=168  Identities=16%  Similarity=0.124  Sum_probs=135.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHH-hhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTY-LVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      |.++..++..++.....+++..+++.| +++.+|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            467777777788888888888999999 8888899999999999999999999999999999998 99999999998888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++..+.++                        .. ..+..++.+++.+...|...++..|.+|++       ++.+.
T Consensus       337 ~~~~~~~~~~~------------------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~  384 (438)
T 3o7q_A          337 ALCLISAFAGG------------------------HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGS  384 (438)
T ss_dssp             HHHHHHHHCCH------------------------HH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHH
T ss_pred             HHHHHHHHcCC------------------------cH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchh
Confidence            88777765521                        22 233447788888888899999988988844       44555


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccccc-chhHHHHHHHHHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEIS-RSVGYGICSVAMFMAII  226 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~-~~~~f~~~~~~~~~~~~  226 (575)
                      ++.. ...+|+.++|.+.|++.+..| ++..|++.++..++..+
T Consensus       385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            5544 456999999999999999888 99999887655444433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.29  E-value=8.6e-12  Score=131.34  Aligned_cols=178  Identities=10%  Similarity=0.024  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHL---PSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV  101 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~  101 (575)
                      |.++..++..++....++....+++.|+.+.++.   +..+.+...++..+...++.++.|+++||+ |||+++.++..+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            3444444444444455555556788888776653   244556777777778888999999999999 999999988887


Q ss_pred             HHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhh
Q 008182          102 QTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAY  181 (575)
Q Consensus       102 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  181 (575)
                      .+++.+++++..                        +...+++..++.+++.+...+....+++|.+|++.      |++
T Consensus       299 ~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~  348 (417)
T 2cfq_A          299 MSVRIIGSSFAT------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SAT  348 (417)
T ss_dssp             HHHHHHHHTTCC------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHH
T ss_pred             HHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHH
Confidence            777765554431                        24445555666676666666666789999999888      999


Q ss_pred             hhhh-hhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          182 FFSR-FFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       182 ~~~~-~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      +++. ++...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus       349 ~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          349 IYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9988 578889999999999999988888999998888777776666554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.20  E-value=7.4e-11  Score=126.41  Aligned_cols=187  Identities=11%  Similarity=-0.001  Sum_probs=140.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH-----HHHH
Q 008182           26 PAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIA-----IFAA  100 (575)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~-----~~~~  100 (575)
                      ..+.+++..++....++.....++.|+.+.++.+..+.+.+.....+...++.++.|+++||+ |||+...     ++..
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            445555566666677777788899999998898888888888999999999999999999998 9986554     6777


Q ss_pred             HHHHHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhh
Q 008182          101 VQTLGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMA  180 (575)
Q Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~  180 (575)
                      +.+++.+++.+......               .....+...+.+..++.+++.+...+....++.|.+|++.      |+
T Consensus       363 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g  421 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG---------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NS  421 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC---------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SS
T ss_pred             HHHHHHHHHHHHHHhcC---------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HH
Confidence            77777666655421100               0111235566677788899999988999999999999999      99


Q ss_pred             hhhhhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          181 YFFSRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       181 ~~~~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      ++.++.+...++|..+++.+.+++.+ .++...|++.++..+++.+..++..++.
T Consensus       422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998876 4677788877777666666655555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.98  E-value=1.4e-08  Score=108.50  Aligned_cols=183  Identities=10%  Similarity=0.042  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGT  106 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~  106 (575)
                      ........++..+..+.......+++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~  356 (491)
T 4gc0_A          278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM  356 (491)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence            33333444444444333444455566667888888888888888888999999999999999 99999999998888887


Q ss_pred             HHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh
Q 008182          107 GMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF  186 (575)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  186 (575)
                      +.++.......                  ........+..+..+.+. ...+....+.+|.+|.+.      |++++++.
T Consensus       357 ~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~  411 (491)
T 4gc0_A          357 FSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIA  411 (491)
T ss_dssp             HHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHH
T ss_pred             HHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHH
Confidence            76665432111                  011112222222223332 234667788999999999      99999999


Q ss_pred             hhhHHHhHHHHHHHHhhhccc------ccchhHHHHHHHHHHHHHHHHHhcCccc
Q 008182          187 FFFISLGTLMAVTVLVYIQDE------ISRSVGYGICSVAMFMAIIIFLAGTKRY  235 (575)
Q Consensus       187 ~~~~~ig~~l~~~i~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~~~  235 (575)
                      .....+|+.+++.+.+.+.+.      .++...|++.++..+++.+..++..|+.
T Consensus       412 ~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          412 VAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            999999999998887776542      3466678887777777776666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.87  E-value=3.3e-10  Score=116.89  Aligned_cols=164  Identities=11%  Similarity=-0.026  Sum_probs=127.3

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAV-QT  103 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~-~~  103 (575)
                      |.++...+..++.....+.+..+++.|+++.+|+++.+.+.+.+...++..++.++.|+++||+ || + +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~-~-~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST-L-MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH-H-HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHHHHHHHHH
Confidence            4567777778888888888889999999988999999999999999999999999999999998 87 2 3333333 23


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      .+..+...... +.                   .+.+.+++..++.+++.+...+...++..|.+| ++      |+++.
T Consensus       276 ~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~  328 (375)
T 2gfp_A          276 AGLLMWIPDWF-GV-------------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAG  328 (375)
T ss_dssp             TSSSSSHHHHH-HH-------------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHH
T ss_pred             HHHHHHHHhhh-cc-------------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHH
Confidence            33222121110 00                   135556677788899999999999999999887 55      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHH
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICS  218 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~  218 (575)
                      ++.+...++|..++|.+.+.+.+..+|+..+++.+
T Consensus       329 g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          329 ALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            99999999999999999999988777887776643

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.18  E-value=8.7e-06  Score=87.51  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=97.4

Q ss_pred             ccccchhHHHHHHHHHHhHHHhhh-hhhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcccee
Q 008182          367 SLTVFFVSAILITLAVYDRLIMPL-WKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALVERKRLSVARAVGLTTATLPVSV  445 (575)
Q Consensus       367 ~~~~~~~~~~~i~~~l~~~~~~~l-~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (575)
                      .+.....+...+..++.+++.+++ .+|          +.+.++.++.+++.+...+.                  +.+.
T Consensus        58 ~~~~~~~~~~~~~~~~~G~l~dr~~g~r----------~~~~~~~~~~~~~~~~~~~~------------------~~~~  109 (524)
T 2xut_A           58 DVFHSFVIGVYFFPLLGGWIADRFFGKY----------NTILWLSLIYCVGHAFLAIF------------------EHSV  109 (524)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTTSSCSH----------HHHHHHHHHHHHHHHHHHHT------------------SSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHHHHHHHHh------------------cccH
Confidence            345555666666667777775554 333          34677877877777776653                  1145


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccCCCc
Q 008182          446 FLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGL---FLTTLSLGFFVSSFLVAVVKKVTGSKGGGGWLADNIN  522 (575)
Q Consensus       446 ~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~lg~~lg~~l~~~v~~~~~~~~~~~w~~~~~~  522 (575)
                      +.+++..++.|++.+...|...+++.+.+|++.|+++++.   ++....+|..+++.+.+.+.+..      +|      
T Consensus       110 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~------  177 (524)
T 2xut_A          110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA------  177 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH------
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH------
Confidence            5677788899999999999999999999999999877776   88888999999999988775421      23      


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHh
Q 008182          523 RGRLDLFYGLLAILSIINLVIYLI  546 (575)
Q Consensus       523 ~~~~~~~f~~~a~l~~v~~~~~~~  546 (575)
                          ...|++.+++.++..+..+.
T Consensus       178 ----~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          178 ----AVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHS
T ss_pred             ----HHHHHHHHHHHHHHHHHHHH
Confidence                56667666666665554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	575
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.91
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.32
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.21

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.3e-26  Score=240.86  Aligned_cols=179  Identities=8%  Similarity=-0.033  Sum_probs=144.9

Q ss_pred             hHHHHHHHHHHHHHHHh---hHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           27 AALVLGIELCERLSTMG---IAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        27 ~~~~~~~~~~~~~~~~~---~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      -|.++...++..+..|.   ....+.+++. ++|++.+|.+++.+++.++..++++++|+++||+ |||+++.++.++.+
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~  100 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA  100 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHH
Confidence            34444444444444442   2345667776 5899999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++.++++++.....                    +...+++.|++.|++.+...+...++++|++|+++      |++++
T Consensus       101 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~  154 (447)
T d1pw4a_         101 AVMLFMGFVPWATS--------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIV  154 (447)
T ss_dssp             HHHHHHHHCHHHHS--------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHH
T ss_pred             HHHhhccccchhhh--------------------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccc
Confidence            99988887643221                    36778999999999999999999999999999988      99999


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhccc-ccchhHHHHHHHHHHHHHHHHHhcCc
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDE-ISRSVGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      ++.+.+.++|..++|.+++.+... .+|++.|++.+...++..++.+...+
T Consensus       155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         155 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence            999999999999999988876654 47999999887776665555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.1e-24  Score=216.91  Aligned_cols=397  Identities=8%  Similarity=-0.014  Sum_probs=233.0

Q ss_pred             cchhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 008182           24 WVPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQT  103 (575)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~  103 (575)
                      -|.+|.+.+..++..+++....+.++.|+++++|+|.++.|++.+++.++..+++++.|+++||+ ||||+++++.....
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence            35788888888888888888889999999999999999999999999999999999999999999 99999999999888


Q ss_pred             HHHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhh
Q 008182          104 LGTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFF  183 (575)
Q Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  183 (575)
                      ++..+..+..+.+.                    .....++.+.+.+.+.+...........+..+++..    .+....
T Consensus        85 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  140 (417)
T d1pv7a_          85 VMFAPFFIFIFGPL--------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEF  140 (417)
T ss_dssp             HTHHHHHHHTHHHH--------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCH
T ss_pred             HHHHHHHHhhhhhh--------------------HHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHH
Confidence            88887777643221                    111223334444444343333333333332222221    155666


Q ss_pred             hhhhhhHHHhHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCccccccCCCCCchhHHHHHHHHHHHhccccC
Q 008182          184 SRFFFFISLGTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLAGTKRYRYKKSSGSPIVHIFQVIVAAIKKRKMDL  263 (575)
Q Consensus       184 ~~~~~~~~ig~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (575)
                      +........+..++|.+++.+.+. +|+..+........+..+...+..++.+..++++++..                 
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  202 (417)
T d1pv7a_         141 GRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-----------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHH-----------------
T ss_pred             HHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhh-----------------
Confidence            677778889999999999988774 55555555554444444444443332221111110000                 


Q ss_pred             CCCccccccCCcccccccCCcchhhhhHHhhhhcCCcCCCCCCCCCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 008182          264 PCNVGMLYEDTPEASRIHHTEQFHFLDKAAIVAEGDFEAGSTPNPWKLCSVTSVEEVKMVARLLPIWATTIIFWTTYAQM  343 (575)
Q Consensus       264 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  343 (575)
                                    .   ..+...........                 .  .........   ............... 
T Consensus       203 --------------~---~~~~~~~~~~~~~~-----------------~--~~~~~~~~~---~~~~~~~~~~~~~~~-  242 (417)
T d1pv7a_         203 --------------A---NHSAFSLKLALELF-----------------R--QPKLWFLSL---YVIGVSCTYDVFDQQ-  242 (417)
T ss_dssp             --------------S---CCCCCCHHHHHHHT-----------------T--SSHHHHHHH---HHHHHHHHHHHHHHH-
T ss_pred             --------------h---hccccccccccccc-----------------c--cccccchhh---hhHHHHHHHHhhhcc-
Confidence                          0   00000000000000                 0  000111111   111111111111111 


Q ss_pred             cchhhhhhcccccccccccccccccccchhHHHHHHHHHHhHHHhhhhhhccCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 008182          344 ITFSVEQATTMERSIGRFQIPAGSLTVFFVSAILITLAVYDRLIMPLWKKWKGKPGFTNLQRMAIGLVLSIVGMAAAALV  423 (575)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  423 (575)
                      ...+...  ..... ...............+...+...+.+++    .+|.      ++.+.+..+.++.+++++.+.. 
T Consensus       243 ~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~------~~~~~~~~~~~~~~~~~~~~~~-  308 (417)
T d1pv7a_         243 FANFFTS--FFATG-EQGTRVFGYVTTMGELLNASIMFFAPLI----INRI------GGKNALLLAGTIMSVRIIGSSF-  308 (417)
T ss_dssp             HHHHHTT--SSSCH-HHHHHHHHHHHHHHHHHHHHHHTTHHHH----HHHH------CHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccccccc--ccccc-ccchhhhcccccccccccccchhhhhhh----hccc------ccccchhhhHHHHHHhhhcccc-
Confidence            0111000  00000 0000001112222333333333333433    4442      2334466777777777666654 


Q ss_pred             HHHHHHHHHhhCCCCCCccceehhhHHHHHHHHHHHHHhhhhhhheecccCCcchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 008182          424 ERKRLSVARAVGLTTATLPVSVFLLIPQFFLVGAGEAFIYTGQLDFFITKSPKGMKTMSTGLF-LTTLSLGFFVSSFLVA  502 (575)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~lg~~lg~~l~~  502 (575)
                                        ..+.+.+++..++.+++.+...+...+++.+.+|++.||++.|+. ++...+|..+++.+.|
T Consensus       309 ------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G  370 (417)
T d1pv7a_         309 ------------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG  370 (417)
T ss_dssp             ------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             ------------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              235556677888899999999999999999999999999999975 5677899999999999


Q ss_pred             hhhhhcCCCCCCCCccCCCcccchhHHHHHHHHHHHHHHHHHHhhhhhc
Q 008182          503 VVKKVTGSKGGGGWLADNINRGRLDLFYGLLAILSIINLVIYLICAVWY  551 (575)
Q Consensus       503 ~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~a~l~~v~~~~~~~~~~~~  551 (575)
                      .+.+..+                ....|++.+++.++..++.++..++.
T Consensus       371 ~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         371 NMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            8875432                35667888888887777776665543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=2.7e-12  Score=132.50  Aligned_cols=180  Identities=17%  Similarity=0.033  Sum_probs=139.7

Q ss_pred             chhHHHHHHHHHHHHHHHhhHHHHHHHhhhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 008182           25 VPAALVLGIELCERLSTMGIAVNLVTYLVGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTL  104 (575)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~  104 (575)
                      |.++.+....++.....++...+++.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence            5677777888888888899999999999999999999999999999999999999999999998 877655444443333


Q ss_pred             HHHHHHHHhhhcccCCCCCCCcCcccccCccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhh
Q 008182          105 GTGMLAMVTKLRQLRPRPCKETATHTCEQASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFS  184 (575)
Q Consensus       105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  184 (575)
                      ...........+.                   .+.....+..++.|++.+...+....+..|.+|++.      |+++.+
T Consensus       328 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  382 (447)
T d1pw4a_         328 VTIATIVYWMNPA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAG  382 (447)
T ss_dssp             HHHHHHHTTSCCT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHH
T ss_pred             HHHHHHHHHhccc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            3222222111111                   235566667777888888888888899999999888      999999


Q ss_pred             hhhhhHHH-hHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHh
Q 008182          185 RFFFFISL-GTLMAVTVLVYIQDEISRSVGYGICSVAMFMAIIIFLA  230 (575)
Q Consensus       185 ~~~~~~~i-g~~l~~~i~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  230 (575)
                      +.+...++ |..++|.+.|++.+.+||+..|++.++..+++.++...
T Consensus       383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            98888777 45678999999999999999998877666665554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1.1e-11  Score=125.30  Aligned_cols=150  Identities=11%  Similarity=0.040  Sum_probs=125.1

Q ss_pred             hhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCccccc
Q 008182           53 VGTMHLPSATSANIVTDFMGTSFLLCLLGGFLADTFLGRYKTIAIFAAVQTLGTGMLAMVTKLRQLRPRPCKETATHTCE  132 (575)
Q Consensus        53 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Gr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  132 (575)
                      .++.+.+....+.......++..++.++.|++.||+ |||+.+.++.++.+++.++..+.+                   
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------  310 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT-------------------  310 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-------------------
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-------------------
Confidence            334455666777888888889999999999999999 999999999999888888777652                   


Q ss_pred             CccchhhHHHHHHHHHHHHcccccccchhccccccCCCCChHhhhhhhhhhhhh-hhhHHHhHHHHHHHHhhhcccccch
Q 008182          133 QASGFQMGVLYIALYLIALGTGGLKSSVSGFGTDQFDEKDEKEKTQMAYFFSRF-FFFISLGTLMAVTVLVYIQDEISRS  211 (575)
Q Consensus       133 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~l~~~i~~~l~~~~~~~  211 (575)
                           +.+.+++..++.+++.+...+...+++.|.+|++.      |++.++.. .....+|..++|.+.|++.+..||+
T Consensus       311 -----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~  379 (417)
T d1pv7a_         311 -----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ  379 (417)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
Confidence                 36667788888999999999999999999999999      99999974 5667899999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCc
Q 008182          212 VGYGICSVAMFMAIIIFLAGTK  233 (575)
Q Consensus       212 ~~f~~~~~~~~~~~~~~~~~~~  233 (575)
                      ..|++.++..++..++..+..+
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         380 GAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            9999888777666555554433